Query 005619
Match_columns 688
No_of_seqs 750 out of 4908
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 02:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.8E-73 2.3E-77 646.2 40.9 609 1-616 107-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-64 7.2E-69 576.1 41.3 537 12-601 94-715 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-59 2E-63 536.8 37.7 568 2-632 12-608 (844)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-57 8.7E-62 513.6 46.9 540 1-592 32-634 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-55 1.4E-59 495.4 48.0 551 2-606 12-625 (680)
6 3t6q_A CD180 antigen; protein- 100.0 4E-56 1.4E-60 497.0 37.0 500 10-586 27-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-55 2.2E-59 487.3 35.4 534 3-627 20-600 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.1E-52 3.8E-57 469.2 39.2 505 20-604 14-561 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8E-52 2.7E-56 462.3 37.8 501 19-605 12-560 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.5E-51 2.6E-55 469.1 40.5 519 21-607 7-564 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 9.2E-50 3.1E-54 442.6 33.7 492 18-589 28-540 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-48 4.2E-53 431.3 32.9 487 19-590 6-520 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2.9E-46 9.8E-51 414.5 34.8 459 69-605 28-533 (570)
14 4eco_A Uncharacterized protein 100.0 4.5E-48 1.6E-52 431.2 19.2 433 69-581 81-601 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-45 4.6E-50 407.0 33.6 473 2-560 13-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-46 1.5E-50 407.8 27.4 436 70-585 22-486 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-45 1.2E-49 411.7 35.3 524 10-621 46-616 (635)
18 4eco_A Uncharacterized protein 100.0 1.1E-46 3.9E-51 419.9 19.5 443 92-605 81-602 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-45 4E-50 404.4 26.6 450 1-560 7-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 2.2E-45 7.5E-50 415.3 28.5 474 18-579 323-863 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 5.3E-45 1.8E-49 412.2 25.7 435 69-583 323-843 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-43 5.1E-48 390.8 24.1 491 41-614 28-546 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 1.5E-42 5E-47 373.3 29.7 379 142-592 13-420 (455)
24 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-41 1.2E-45 378.8 36.5 478 1-558 59-582 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-42 1.1E-46 380.0 26.2 457 16-560 29-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 2.8E-39 9.5E-44 347.8 31.4 383 94-561 12-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 6.3E-40 2.2E-44 349.4 24.3 306 69-417 11-330 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 9.1E-40 3.1E-44 348.1 22.2 425 11-585 5-434 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 2.7E-38 9.3E-43 341.9 25.9 346 191-607 14-360 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-37 7.7E-42 330.0 28.5 266 65-373 38-303 (457)
31 1o6v_A Internalin A; bacterial 100.0 4.5E-36 1.5E-40 322.9 37.4 343 118-581 47-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 5.3E-36 1.8E-40 322.3 35.8 342 163-601 45-386 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-36 7.6E-41 322.3 29.9 322 7-417 31-352 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 1.2E-35 4E-40 321.2 27.4 320 143-557 15-334 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 1.7E-35 5.7E-40 311.1 26.3 334 163-606 44-377 (390)
36 3oja_B Anopheles plasmodium-re 100.0 3E-35 1E-39 326.0 26.5 333 189-607 52-384 (597)
37 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-35 1.6E-39 296.9 19.1 257 286-612 51-312 (313)
38 4fmz_A Internalin; leucine ric 100.0 3.7E-33 1.3E-37 288.6 31.1 304 163-580 43-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 9.2E-34 3.2E-38 297.8 26.8 335 137-583 43-377 (390)
40 4fmz_A Internalin; leucine ric 100.0 2.3E-32 7.9E-37 282.6 32.5 305 67-417 42-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.5E-32 5.3E-37 304.3 28.4 312 163-559 50-361 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-35 5.4E-40 319.1 2.2 356 139-557 3-412 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 2E-33 7E-38 285.0 16.4 251 261-581 50-305 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-34 1E-38 309.2 1.7 388 18-426 3-449 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-31 1.3E-35 271.4 24.8 287 189-578 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.1E-31 2.1E-35 269.8 25.9 259 154-423 18-283 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.2E-30 4.1E-35 267.5 26.8 81 496-577 241-329 (330)
48 1xku_A Decorin; proteoglycan, 100.0 5.7E-30 2E-34 262.4 27.5 268 139-415 52-330 (330)
49 2z66_A Variable lymphocyte rec 100.0 5E-30 1.7E-34 260.0 17.8 250 265-585 11-266 (306)
50 3ogk_B Coronatine-insensitive 100.0 2.5E-31 8.6E-36 295.8 6.6 392 115-575 110-546 (592)
51 3ogk_B Coronatine-insensitive 100.0 4.9E-31 1.7E-35 293.5 8.1 396 89-553 109-548 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 8.5E-30 2.9E-34 263.6 15.2 287 212-589 30-323 (353)
53 3zyi_A Leucine-rich repeat-con 100.0 1.6E-28 5.4E-33 262.9 22.2 231 286-585 76-308 (452)
54 3zyj_A Leucine-rich repeat-con 100.0 5.1E-28 1.7E-32 258.0 23.4 231 286-585 65-297 (440)
55 2z80_A TOLL-like receptor 2, v 100.0 2.1E-28 7.2E-33 253.2 18.8 275 142-421 34-318 (353)
56 2z66_A Variable lymphocyte rec 100.0 7E-29 2.4E-33 251.5 14.2 258 261-585 28-292 (306)
57 1ozn_A Reticulon 4 receptor; N 100.0 2.8E-28 9.6E-33 244.2 16.6 229 288-586 14-244 (285)
58 4fcg_A Uncharacterized protein 100.0 1.8E-27 6.1E-32 242.6 19.7 235 260-580 80-314 (328)
59 4fcg_A Uncharacterized protein 100.0 3E-27 1E-31 240.9 20.3 236 235-556 79-314 (328)
60 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-27 2.1E-31 234.5 21.7 227 191-421 14-242 (285)
61 2p1m_B Transport inhibitor res 99.9 5.2E-30 1.8E-34 285.3 -0.8 83 495-577 456-541 (594)
62 3o53_A Protein LRIM1, AGAP0063 99.9 3.8E-29 1.3E-33 254.3 4.3 265 239-583 12-279 (317)
63 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.6E-31 246.7 23.7 228 261-557 75-304 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 2.1E-26 7E-31 245.6 23.3 228 261-557 64-293 (440)
65 1wwl_A Monocyte differentiatio 99.9 2.4E-28 8.2E-33 247.8 7.6 249 259-581 41-310 (312)
66 2p1m_B Transport inhibitor res 99.9 4.9E-29 1.7E-33 277.5 1.3 445 21-556 46-544 (594)
67 3oja_A Leucine-rich immune mol 99.9 6.3E-28 2.2E-32 259.4 8.7 235 261-575 34-270 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-25 1.1E-29 243.0 28.2 154 188-368 40-193 (622)
69 1wwl_A Monocyte differentiatio 99.9 5.2E-28 1.8E-32 245.3 5.1 249 234-558 40-311 (312)
70 3g06_A SSPH2 (leucine-rich rep 99.9 4.9E-25 1.7E-29 241.5 27.3 265 70-377 41-305 (622)
71 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4.3E-32 243.1 5.9 258 141-413 12-271 (317)
72 2z62_A TOLL-like receptor 4, v 99.9 9.4E-26 3.2E-30 224.7 19.0 215 310-592 29-249 (276)
73 3oja_A Leucine-rich immune mol 99.9 9.7E-26 3.3E-30 242.4 16.1 221 283-582 32-252 (487)
74 2o6q_A Variable lymphocyte rec 99.9 9.4E-25 3.2E-29 216.5 20.9 210 310-588 17-226 (270)
75 1p9a_G Platelet glycoprotein I 99.9 6.6E-24 2.2E-28 212.1 20.0 207 305-584 6-212 (290)
76 3m19_A Variable lymphocyte rec 99.9 6.2E-24 2.1E-28 208.1 17.7 213 333-616 15-233 (251)
77 2z62_A TOLL-like receptor 4, v 99.9 2.4E-23 8.2E-28 207.3 21.0 225 144-394 12-238 (276)
78 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.9E-29 225.6 9.6 258 242-582 3-299 (362)
79 3rfs_A Internalin B, repeat mo 99.9 6E-23 2.1E-27 203.6 18.6 221 286-585 20-240 (272)
80 3goz_A Leucine-rich repeat-con 99.9 4.8E-24 1.7E-28 220.9 10.3 177 217-393 2-209 (362)
81 2o6q_A Variable lymphocyte rec 99.9 7.4E-22 2.5E-26 195.6 23.1 204 189-420 17-221 (270)
82 3rfs_A Internalin B, repeat mo 99.9 9.6E-23 3.3E-27 202.1 16.3 185 162-355 61-245 (272)
83 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.3E-29 227.0 2.3 253 254-584 25-320 (386)
84 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.6E-28 214.6 9.8 249 262-585 48-311 (336)
85 1p9a_G Platelet glycoprotein I 99.9 5.4E-22 1.8E-26 198.2 19.8 203 65-274 6-208 (290)
86 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 205.6 13.8 232 262-581 65-308 (310)
87 2ca6_A RAN GTPase-activating p 99.9 4.8E-24 1.6E-28 223.3 3.3 252 229-559 24-319 (386)
88 2ast_B S-phase kinase-associat 99.9 3.3E-23 1.1E-27 212.8 8.0 176 214-415 48-233 (336)
89 2xwt_C Thyrotropin receptor; s 99.9 3.8E-22 1.3E-26 193.9 13.9 195 310-577 32-236 (239)
90 4glp_A Monocyte differentiatio 99.9 3.2E-22 1.1E-26 202.5 13.1 223 310-601 65-305 (310)
91 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.8E-26 197.2 17.0 192 308-581 40-231 (308)
92 3m19_A Variable lymphocyte rec 99.9 6E-21 2E-25 186.8 19.1 180 310-558 15-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 7.9E-25 188.3 19.6 191 68-298 40-230 (308)
94 2xwt_C Thyrotropin receptor; s 99.8 8.3E-21 2.8E-25 184.4 15.6 195 214-414 32-236 (239)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 6.6E-21 2.3E-25 182.0 11.1 158 359-586 14-172 (220)
96 2v9t_B SLIT homolog 2 protein 99.8 1.2E-20 4.2E-25 180.1 11.5 157 359-585 14-170 (220)
97 3e6j_A Variable lymphocyte rec 99.8 6E-20 2.1E-24 176.6 14.1 185 358-615 21-211 (229)
98 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6E-24 185.6 18.2 240 142-414 12-256 (350)
99 3cvr_A Invasion plasmid antige 99.8 1.2E-19 4.1E-24 196.3 16.0 114 286-417 60-173 (571)
100 4ay9_X Follicle-stimulating ho 99.8 4.5E-19 1.6E-23 182.5 18.8 224 191-422 12-241 (350)
101 2xot_A Amphoterin-induced prot 99.8 4.9E-20 1.7E-24 190.5 10.9 180 335-584 21-206 (361)
102 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 165.0 17.6 161 140-309 29-189 (208)
103 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 165.4 16.7 138 212-355 51-188 (208)
104 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5E-23 173.4 16.2 171 330-581 44-214 (291)
105 3cvr_A Invasion plasmid antige 99.8 2.2E-18 7.5E-23 186.4 18.8 188 189-428 60-254 (571)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.7E-23 165.3 14.4 156 335-560 14-170 (220)
107 1w8a_A SLIT protein; signaling 99.8 1.2E-18 4.3E-23 162.4 12.8 115 494-608 53-167 (192)
108 2v9t_B SLIT homolog 2 protein 99.8 2.7E-18 9.1E-23 163.9 14.1 154 335-558 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.8 7.1E-18 2.4E-22 168.4 15.5 147 163-322 67-213 (291)
110 1m9s_A Internalin B; cell inva 99.8 8.8E-18 3E-22 183.9 17.1 166 239-417 23-188 (605)
111 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.6E-22 160.1 16.2 157 333-560 20-176 (229)
112 4ezg_A Putative uncharacterize 99.7 6.2E-18 2.1E-22 158.5 11.9 154 353-581 41-195 (197)
113 1dce_A Protein (RAB geranylger 99.7 2E-20 7E-25 203.6 -6.3 61 496-558 487-548 (567)
114 1m9s_A Internalin B; cell inva 99.7 2.3E-17 8E-22 180.5 17.3 188 94-298 23-210 (605)
115 1xeu_A Internalin C; cellular 99.7 6.8E-18 2.3E-22 165.8 10.9 171 330-582 17-187 (263)
116 1dce_A Protein (RAB geranylger 99.7 4.2E-20 1.4E-24 201.1 -5.8 204 258-550 346-567 (567)
117 2xot_A Amphoterin-induced prot 99.7 2E-17 6.9E-22 170.8 13.6 176 142-322 21-202 (361)
118 4ezg_A Putative uncharacterize 99.7 3.3E-17 1.1E-21 153.6 13.0 153 330-557 42-195 (197)
119 3sb4_A Hypothetical leucine ri 99.7 4E-18 1.4E-22 173.8 6.1 288 91-410 24-327 (329)
120 2wfh_A SLIT homolog 2 protein 99.7 2.6E-17 8.8E-22 153.3 10.8 92 494-585 53-144 (193)
121 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.9E-22 154.6 9.6 156 359-585 11-167 (192)
122 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5E-22 186.9 7.4 133 291-427 207-339 (727)
123 3sb4_A Hypothetical leucine ri 99.7 4.5E-17 1.5E-21 166.1 10.2 56 494-550 272-328 (329)
124 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5E-22 187.0 5.9 191 315-583 207-407 (727)
125 1xeu_A Internalin C; cellular 99.7 9.2E-17 3.1E-21 157.7 10.6 169 237-419 19-187 (263)
126 4fdw_A Leucine rich hypothetic 99.7 3.1E-15 1.1E-19 155.5 21.2 198 137-344 178-382 (401)
127 4fdw_A Leucine rich hypothetic 99.7 3.3E-15 1.1E-19 155.3 20.9 263 17-297 112-382 (401)
128 2o6r_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 141.6 13.0 94 494-587 51-144 (177)
129 2ell_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 140.8 11.5 88 494-581 70-161 (168)
130 2ell_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 142.0 10.0 138 355-562 23-165 (168)
131 4fs7_A Uncharacterized protein 99.6 9.4E-15 3.2E-19 152.8 20.2 327 38-385 65-393 (394)
132 4fs7_A Uncharacterized protein 99.6 1.1E-14 3.9E-19 152.1 20.1 316 57-414 59-376 (394)
133 2je0_A Acidic leucine-rich nuc 99.6 3.6E-16 1.2E-20 139.3 7.4 82 494-575 63-148 (149)
134 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 135.8 9.6 128 356-552 17-149 (149)
135 3g39_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 138.7 9.5 97 494-590 29-125 (170)
136 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 135.9 13.2 129 359-558 13-141 (193)
137 2o6r_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 132.8 12.8 133 358-560 9-141 (177)
138 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.5E-21 149.6 -4.5 152 356-581 18-186 (198)
139 2r9u_A Variable lymphocyte rec 99.5 2.1E-14 7.2E-19 131.0 9.0 111 480-590 18-128 (174)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.7E-19 132.9 7.3 86 494-581 63-154 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.5 5.4E-14 1.8E-18 129.0 9.3 133 352-556 15-153 (176)
142 1ds9_A Outer arm dynein; leuci 99.5 1.4E-15 4.9E-20 142.5 -3.2 152 332-557 18-186 (198)
143 4gt6_A Cell surface protein; l 99.4 7E-12 2.4E-16 130.9 20.8 132 254-392 258-390 (394)
144 4gt6_A Cell surface protein; l 99.4 1.2E-11 4E-16 129.2 20.7 318 177-578 52-389 (394)
145 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 119.2 10.9 66 494-559 53-118 (170)
146 3un9_A NLR family member X1; l 99.3 6.4E-14 2.2E-18 144.2 -1.5 62 496-557 184-253 (372)
147 2ifg_A High affinity nerve gro 99.3 1.5E-12 5.1E-17 133.7 8.5 90 494-584 30-120 (347)
148 2r9u_A Variable lymphocyte rec 99.3 4.8E-12 1.6E-16 115.3 10.9 105 497-604 14-119 (174)
149 3un9_A NLR family member X1; l 99.3 2.6E-13 8.9E-18 139.6 0.7 63 495-557 211-284 (372)
150 4h09_A Hypothetical leucine ri 99.2 9.3E-10 3.2E-14 114.2 21.3 298 13-329 41-352 (379)
151 4h09_A Hypothetical leucine ri 99.2 1.5E-09 5.1E-14 112.7 21.9 314 39-380 41-356 (379)
152 2ifg_A High affinity nerve gro 99.2 4.3E-11 1.5E-15 122.8 9.7 105 499-605 12-118 (347)
153 2ra8_A Uncharacterized protein 98.9 3.1E-09 1.1E-13 108.2 8.1 83 494-578 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.4E-14 110.3 5.4 63 331-393 251-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 4E-08 1.4E-12 90.1 4.1 17 401-417 62-78 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2.9E-08 9.9E-13 91.1 2.8 87 494-580 64-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.4E-07 4.7E-12 90.8 5.4 67 516-584 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.4 7.1E-08 2.4E-12 92.8 2.9 80 492-573 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 75.2 2.9 83 333-415 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3.2E-06 1.1E-10 75.2 2.6 85 308-392 60-151 (176)
161 3rfe_A Platelet glycoprotein I 97.6 9.8E-05 3.4E-09 62.6 6.4 60 523-584 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00017 5.7E-09 65.4 2.0 85 332-416 70-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00044 1.5E-08 62.6 3.9 61 332-392 98-169 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0014 4.7E-08 55.4 5.7 57 498-556 11-68 (130)
165 2lz0_A Uncharacterized protein 58.5 9.1 0.00031 29.9 3.8 47 4-53 6-52 (100)
166 2lz0_A Uncharacterized protein 48.4 42 0.0014 26.0 6.1 45 507-552 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.8e-73 Score=646.18 Aligned_cols=609 Identities=32% Similarity=0.450 Sum_probs=485.6
Q ss_pred CCCCCCcccCch--hhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccc----------------
Q 005619 1 MSSNQLSGILPS--VIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKI---------------- 62 (688)
Q Consensus 1 Ls~n~~~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~---------------- 62 (688)
|++|.++|.+|. .++++++|++|+|++|.+.+ .+|...+.++++|++|++++|.+.+..+.
T Consensus 107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L 185 (768)
T 3rgz_A 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185 (768)
T ss_dssp CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEEC
T ss_pred CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEEC
Confidence 456667766666 66677777777777766654 33322224455555555555544322111
Q ss_pred --------cCCCCCcceeEEECCCCCCCC-cchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC
Q 005619 63 --------ENCLPTFQLKVLSLPNCNLGV-IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133 (688)
Q Consensus 63 --------~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 133 (688)
..+..+++|++|++++|.+.. +|. +.++++|++|++++|.+++.+|..+ .++++|++|++++|.+++..
T Consensus 186 s~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp CSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESC
T ss_pred CCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCcc
Confidence 113567788888888888844 454 8888889999999888887777654 58889999999999887654
Q ss_pred CCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCC
Q 005619 134 LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF 213 (688)
Q Consensus 134 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 213 (688)
....+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|...+..++
T Consensus 264 ~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 44478899999999999998999988765699999999999999999999999999999999999999899988788999
Q ss_pred CCCEEEcccCcCCCcCcccccCCC-CCCEEeccCCcCCCcccccccC--CCCCCEEEccCCcCCCCCchhhhCCcCCcEE
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNLT-RLLFLYLDNNHFSGKIKDGLLR--SSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 290 (688)
+|++|++++|.+++..|..+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+++.+|..+..+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 999999999999988899998887 9999999999999888887766 7899999999999999999999999999999
Q ss_pred EccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCC
Q 005619 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFF 369 (688)
Q Consensus 291 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 369 (688)
++++|.+++.+|..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999999999999999999999999999999998888777 8999999999999999999999999999999999999999
Q ss_pred CcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccc
Q 005619 370 GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGV 449 (688)
Q Consensus 370 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 449 (688)
+.+|.+++.+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+|.++.+....... ....+..........
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA-NFIAGKRYVYIKNDG 582 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC-STTCSCEEEEEECCS
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh-hcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999988765422110 000000000000000
Q ss_pred ccccccccc-ceecccCCCCCCCC--CcceEEEeeeccccc---cccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 450 ADIRNYYNS-TVQLSLDGIDGRSL--GTQVEVNFMTKNRYE---SYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 450 ~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
.. ..... ...+...+...... ...........+.+. ......++.|+.|||++|+++|.+|..|+.+++|+.
T Consensus 583 ~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 583 MK--KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CC--TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred cc--ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 00 00000 00000000000000 000000000000000 001133678999999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHL 603 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 603 (688)
|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+.++++|++||+++|+++|.+|.+++|.++...+|.||+.+
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcc
Q 005619 604 CGPPINKSCTNLL 616 (688)
Q Consensus 604 ~~~p~~~~C~~~~ 616 (688)
||.|+. .|....
T Consensus 741 cg~~l~-~C~~~~ 752 (768)
T 3rgz_A 741 CGYPLP-RCDPSN 752 (768)
T ss_dssp ESTTSC-CCCSCC
T ss_pred cCCCCc-CCCCCc
Confidence 999987 897543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-64 Score=576.12 Aligned_cols=537 Identities=31% Similarity=0.417 Sum_probs=306.5
Q ss_pred hhhcCCCCCCEEeCCCCcCcccccC-HHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chh--
Q 005619 12 SVIANLTSLEYLALYDNKFKGRLFS-FCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNF-- 87 (688)
Q Consensus 12 ~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~-- 87 (688)
..|+++++|++|||++|.+++ .+| ...++++++|++|++++|.+.+..+...+.++++|++|++++|.+... |..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 345555555555555555544 233 114555555555555555444443333334455555555555555222 222
Q ss_pred -hhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCC-CCCCCCCCcCEEEccCCCCCCCCChhhhhcCCC
Q 005619 88 -LLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGF-QLTSAQHGLISLDISSNNFTGKLPQNMGIVLPK 165 (688)
Q Consensus 88 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~ 165 (688)
+.++++|++|++++|.+++..+. ..+++|++|++++|.+++. +....+++|++|++++|.+++.+|..+. .+++
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~ 248 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTE 248 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTT-TCSS
T ss_pred hhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHh-cCCC
Confidence 44555555555555555544332 3455555555555555432 1122445555555555555544444443 4555
Q ss_pred CCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEecc
Q 005619 166 LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245 (688)
Q Consensus 166 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 245 (688)
|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 555555555555444432 455555555555555555554443334555555555555555555555555555555555
Q ss_pred CCcCCCccccc-ccCCCCCCEEEccCCcCCCCCchhhhCCc-CCcEEEccccccCCCCcccccC--CCCCcEEEccCCcC
Q 005619 246 NNHFSGKIKDG-LLRSSELMVLDISNNHLSGHIPSWMGNFS-NLYILSMSKNLLEGNIPVQFNN--LAILQILDISENNL 321 (688)
Q Consensus 246 ~n~l~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l 321 (688)
+|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.++..+.. +++|++|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 55555444433 55555555555555555555555555544 5555555555555444444443 44555555555555
Q ss_pred cccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhh
Q 005619 322 SGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQL 400 (688)
Q Consensus 322 ~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 400 (688)
++..+..+ .+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 54444444 55555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEe
Q 005619 401 CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNF 480 (688)
Q Consensus 401 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 480 (688)
..+++|++|++++|++++.+|.++.+++. ++...
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~----------------------------------------------L~~L~ 520 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLEN----------------------------------------------LAILK 520 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTT----------------------------------------------CCEEE
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCC----------------------------------------------CCEEE
Confidence 55555555555555555555555544321 11111
Q ss_pred eeccccc-ccc--ccccccccEEEccCCcccccCC---------------------------------------------
Q 005619 481 MTKNRYE-SYK--GVILDYMAGLDLSSNKLTGDIP--------------------------------------------- 512 (688)
Q Consensus 481 ~~~~~~~-~~~--~~~l~~L~~LdLs~N~l~~~~p--------------------------------------------- 512 (688)
+..+.+. ..+ ...+++|+.||+++|.++|.+|
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 1111111 000 0124555566666665555554
Q ss_pred -------------------------hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC
Q 005619 513 -------------------------SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 567 (688)
Q Consensus 513 -------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 567 (688)
..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..+++++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 4455578899999999999999999999999999999999999999999999999
Q ss_pred CCCEEecCCCcCccCCCCC-cccCCcCccccCCCC
Q 005619 568 SLSKFDVSYNDLSGPIPDK-EQFSTFDESSYRGNL 601 (688)
Q Consensus 568 ~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 601 (688)
+|++|||++|+++|.+|.. ..+..+......+|.
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999999999999999976 455666666666665
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-59 Score=536.77 Aligned_cols=568 Identities=21% Similarity=0.233 Sum_probs=367.6
Q ss_pred CCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC
Q 005619 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL 81 (688)
Q Consensus 2 s~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 81 (688)
++++++.+ |. -.++|++|||++|.+++ ..+ ..|.++++|++|++++|.....+++.+|.++++|++|++++|.+
T Consensus 12 s~~~L~~v-P~---lp~~l~~LdLs~N~i~~-i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 12 RFCNLTQV-PQ---VLNTTERLLLSFNYIRT-VTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp SCCCSSCC-CS---SCTTCCEEEEESCCCCE-ECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred cCCCCCCC-CC---CCCCcCEEECCCCcCCc-cCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 45667765 43 45799999999999986 333 57999999999999999888888788899999999999999999
Q ss_pred CCc-chhhhCCCCCCEEECCCCcCCCCCchH-HhhCCCCCcEEEccCCCCCCCCCC---CCCCCcCEEEccCCCCCCCCC
Q 005619 82 GVI-PNFLLHQFNLKYLDLSHNKLAGNFPTW-LLENNTKLEVLYLTNNSFSGFQLT---SAQHGLISLDISSNNFTGKLP 156 (688)
Q Consensus 82 ~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~ls~n~~~~~~~ 156 (688)
..+ |..+.++++|++|++++|.+++.+|.. .+.++++|++|++++|.+++...+ ..+++|++|++++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 766 888999999999999999998766543 356899999999999999886543 478999999999999987777
Q ss_pred hhhhhcC--CCCCEEEccCCCCCcccchhhhcCCC------CCEEEccCCcCccccCchhhcCC--CCCCEEEcccC---
Q 005619 157 QNMGIVL--PKLDCMNISKNSFEGNIPSSIGKMQG------LRLLDVSSNKFAGELSQSPVTNC--FSLEWLQLSNN--- 223 (688)
Q Consensus 157 ~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n--- 223 (688)
..+. .+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+.+.++....... ..++.+.++.+
T Consensus 166 ~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 166 HELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 7665 45 89999999999999888777766665 99999999988766665443221 24444444421
Q ss_pred ------cCCCcCcccccCC--CCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccc
Q 005619 224 ------NFDGQIFPNYVNL--TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295 (688)
Q Consensus 224 ------~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 295 (688)
.+.......|.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 1122222223222 44555555555555544555555555555555555555555555555555555555555
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCch
Q 005619 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPH 374 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 374 (688)
.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++ ++ .+++|+.|++++|+++. +|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~-l~~ 398 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVT-LPK 398 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCC-CCC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCccc-ccc
Confidence 5555555555555555555555555555444444 45555555555555542 11 14455555555555532 222
Q ss_pred hhhcCCCccEEeccCCcCCCCC-chhhcCCCCCCEEEccCCcCccccchhh-hhhhhcccCCcccccceeEEeccccccc
Q 005619 375 QINEHSNLRALLLRGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPACI-TNLLFWKVGSRYLSGFVMVVMDLGVADI 452 (688)
Q Consensus 375 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (688)
. ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+... ..+. .+..++++.+.+
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~------------~L~~L~Ls~N~l 463 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP------------SLEQLFLGENML 463 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT------------TCCBCEEESCCC
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC------------ccccccCCCCcc
Confidence 1 234555555555554321 1223345555555555555543222100 0000 000000000000
Q ss_pred ccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCc
Q 005619 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
...+. .... ...+ ..+++|+.|||++|++++..|..|..+++|+.|+|++|+++
T Consensus 464 ~~~~~----------~~~~--------------~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 464 QLAWE----------TELC--------------WDVF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp SSSCC----------SCCC--------------SSCS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccc----------cccc--------------hhhh--cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 00000 0000 0000 22678999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCCCCCCCC
Q 005619 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 612 (688)
Q Consensus 533 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p~~~~C 612 (688)
+..|..+. ++|+.|||++|++++.+|..+. +|++|++++|++.|.|+.. .|......++..+||.|....|
T Consensus 518 ~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C 588 (844)
T 3j0a_A 518 VLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYC 588 (844)
T ss_dssp SCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCC
T ss_pred ccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCcc
Confidence 87777776 8999999999999999988764 7889999999999999743 2222223456778888888899
Q ss_pred CCcccccccCCCCCCccccc
Q 005619 613 TNLLELLETSSKGAEDESAV 632 (688)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~ 632 (688)
..|....+....+.....|.
T Consensus 589 ~~p~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 589 VYPDSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp SSCSSSCSCCTTTCCCCCC-
T ss_pred CCchhhCCCccccCccccCC
Confidence 87765544443333333443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-57 Score=513.57 Aligned_cols=540 Identities=21% Similarity=0.221 Sum_probs=328.2
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
|++|+++++.+..|.++++|++|+|++|.+++ ..| ..+.++++|++|++++|.+. .++..+|.++++|++|++++|+
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEP-ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCT-THHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCH-HHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCc
Confidence 46677777766677777777777777777765 333 56777777777777777644 4444457777777777777777
Q ss_pred CCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC----CCCCCcCEEEccCCCCCCCC
Q 005619 81 LGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT----SAQHGLISLDISSNNFTGKL 155 (688)
Q Consensus 81 l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~L~~L~ls~n~~~~~~ 155 (688)
+..+| ..+.++++|++|++++|.+++..+.. +.++++|++|++++|.+++.... ..+++|++|++++|.+++..
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 76654 46677777777777777776544443 34677777777777777664321 13467777777777776444
Q ss_pred ChhhhhcC---------------------------CCCCEEEccCCCCCcccchhhhcCCC--CCEEEccCCcCccccCc
Q 005619 156 PQNMGIVL---------------------------PKLDCMNISKNSFEGNIPSSIGKMQG--LRLLDVSSNKFAGELSQ 206 (688)
Q Consensus 156 ~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~ 206 (688)
|..+. .+ ++|++|++++|.+++..|.++..++. |++|++++|.+. .++.
T Consensus 188 ~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~ 265 (680)
T 1ziw_A 188 PGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGN 265 (680)
T ss_dssp TTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECT
T ss_pred hhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCc
Confidence 43332 22 34555555555555555555555433 666666666555 2333
Q ss_pred hhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCC-----ccc----ccccCCCCCCEEEccCCcCCCCC
Q 005619 207 SPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG-----KIK----DGLLRSSELMVLDISNNHLSGHI 277 (688)
Q Consensus 207 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~Ls~n~l~~~~ 277 (688)
..+..+++|+.|++++|.+++..+..+.++++|+.|++++|...+ .+| ..+..+++|++|++++|.+.+..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 334555666666666666655555555566666666665543322 111 13455556666666666666555
Q ss_pred chhhhCCcCCcEEEccccccCC--CCcccccCC--CCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCc-hh
Q 005619 278 PSWMGNFSNLYILSMSKNLLEG--NIPVQFNNL--AILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIP-NT 351 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~-~~ 351 (688)
+..|..+++|++|++++|.+.. .....|..+ ++|+.|++++|++++..+..+ .+++|++|++++|.+.+.++ ..
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 5555666666666666554321 111222222 355666666666655555444 55666666666666654443 44
Q ss_pred ccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC--CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhh
Q 005619 352 IFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ--GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429 (688)
Q Consensus 352 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 429 (688)
+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..|..+..+..
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence 555566666666666665555555666666666666666554 345556666666666666666666544444433221
Q ss_pred cccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccc-----------cccccccc
Q 005619 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYK-----------GVILDYMA 498 (688)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~L~ 498 (688)
++...+..+.+..+. ...++.|+
T Consensus 506 ----------------------------------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 506 ----------------------------------------------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ----------------------------------------------CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred ----------------------------------------------cCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 111111111111110 12367788
Q ss_pred EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCC-CCCCCCEEecCCC
Q 005619 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT-ELHSLSKFDVSYN 577 (688)
Q Consensus 499 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N 577 (688)
.|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|++|++++|
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 888888888855556788888888888888888877777788888888888888888887777676 6788888888888
Q ss_pred cCccCCCCCcccCCc
Q 005619 578 DLSGPIPDKEQFSTF 592 (688)
Q Consensus 578 ~l~~~~p~~~~~~~~ 592 (688)
++.|.|+...+|..|
T Consensus 620 ~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 620 PFDCTCESIAWFVNW 634 (680)
T ss_dssp CCCBCCCCCSSEECC
T ss_pred CcccCCccHHHHHHH
Confidence 888888753444444
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-55 Score=495.39 Aligned_cols=551 Identities=20% Similarity=0.212 Sum_probs=389.2
Q ss_pred CCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC
Q 005619 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL 81 (688)
Q Consensus 2 s~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 81 (688)
++++++. +|..+. +++++|+|++|.+++ ++...|.++++|++|++++|.+.. +.+..+.++++|++|++++|.+
T Consensus 12 s~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 12 SHLKLTQ-VPDDLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp CSSCCSS-CCSCSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCC
T ss_pred CCCCccc-cccccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCcc
Confidence 4566665 455554 799999999999986 555679999999999999998654 4445688899999999999999
Q ss_pred CCcch-hhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC--CCCCCcCEEEccCCCCCCCCChh
Q 005619 82 GVIPN-FLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT--SAQHGLISLDISSNNFTGKLPQN 158 (688)
Q Consensus 82 ~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~ 158 (688)
..+|. .+..+++|++|++++|+++ .++...+.++++|++|++++|.+++.... ..+++|++|++++|.+++..+..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 98876 6899999999999999998 45544457999999999999999876433 37899999999999999554444
Q ss_pred hh-hcCCCCCEEEccCCCCCcccchhhhcCCC---------------------------CCEEEccCCcCccccCchhhc
Q 005619 159 MG-IVLPKLDCMNISKNSFEGNIPSSIGKMQG---------------------------LRLLDVSSNKFAGELSQSPVT 210 (688)
Q Consensus 159 ~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---------------------------L~~L~L~~n~l~~~~~~~~~~ 210 (688)
+. ..+++|++|++++|.+++..|..+..+++ |++|++++|.+.+..+. .+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-Hhh
Confidence 32 24689999999999999888887776654 55555555555533332 233
Q ss_pred CCC--CCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCC-----CCch----
Q 005619 211 NCF--SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSG-----HIPS---- 279 (688)
Q Consensus 211 ~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~---- 279 (688)
.++ +|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .+|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 333 36666666666666555666666666666666666666666666666666666666554332 1221
Q ss_pred hhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccc--cccc---ccCccceEeeecCccccCCchhccC
Q 005619 280 WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM--ISTL---NLSSVEHLYLQSNALGGSIPNTIFR 354 (688)
Q Consensus 280 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~ 354 (688)
.+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.... ...+ ..++|+.|++++|++++..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 4556666666666666666666666666666777776666543221 1111 2246666777777666666666666
Q ss_pred CCCccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc--cccchhhhhhhhcc
Q 005619 355 GSALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN--GSIPACITNLLFWK 431 (688)
Q Consensus 355 ~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~--~~~p~~l~~l~~~~ 431 (688)
+++|+.|++++|++.+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.++ +.+|..+.++.
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~--- 480 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR--- 480 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT---
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC---
Confidence 6677777777776655443 55666667777777777766666666666677777777776665 34454443322
Q ss_pred cCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccc---cccccccEEEccCCccc
Q 005619 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKG---VILDYMAGLDLSSNKLT 508 (688)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~LdLs~N~l~ 508 (688)
.++...+..+.+...+. ..++.|+.|++++|.++
T Consensus 481 -------------------------------------------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 481 -------------------------------------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp -------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred -------------------------------------------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 12222333333333322 23788999999999998
Q ss_pred ccCC--------hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCc
Q 005619 509 GDIP--------SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 509 ~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 580 (688)
+..+ ..|..+++|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|++|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 6532 24789999999999999999655567999999999999999999888888899999999999999999
Q ss_pred cCCCCCc--ccCCcCccccCCCCCCCCC
Q 005619 581 GPIPDKE--QFSTFDESSYRGNLHLCGP 606 (688)
Q Consensus 581 ~~~p~~~--~~~~~~~~~~~~n~~l~~~ 606 (688)
+..|... .+..+....+.+|+..|+.
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccChhHhcccccccCEEEccCCCcccCC
Confidence 8766431 4556666667777766653
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-56 Score=497.01 Aligned_cols=500 Identities=22% Similarity=0.220 Sum_probs=419.2
Q ss_pred CchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhh
Q 005619 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFL 88 (688)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~ 88 (688)
+|..+. +++++|+|++|.+++ ++...|.++++|++|++++|.+.. +.+.+|.++++|++|++++|.+..+ |..+
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred CcCCCC--CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhh
Confidence 455554 479999999999986 433689999999999999997654 5555789999999999999999665 7788
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC--CCCCcCEEEccCCCCCCCCChhhhhcCCCC
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS--AQHGLISLDISSNNFTGKLPQNMGIVLPKL 166 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L 166 (688)
.++++|++|++++|++++..+. .+.++++|++|++++|.+++...+. .+++|++|++++|.++ .++...+..+++|
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 179 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQA 179 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTC
T ss_pred cccccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhccc
Confidence 9999999999999999843233 3568999999999999998864333 6789999999999998 4444444479999
Q ss_pred C--EEEccCCCCCcccchhhhcCCCCCEEEccCCcCc-------------------------cccCchhhcCCC--CCCE
Q 005619 167 D--CMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFA-------------------------GELSQSPVTNCF--SLEW 217 (688)
Q Consensus 167 ~--~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~ 217 (688)
+ +|++++|.+++..|..+.. ..|++|++++|... ..++...+..+. +|+.
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred ceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 9 8999999999877766544 67888988877411 022222333332 6889
Q ss_pred EEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccccc
Q 005619 218 LQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297 (688)
Q Consensus 218 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 297 (688)
|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 999999999888888999999999999999998 6777888999999999999999988888899999999999999988
Q ss_pred CCCCc-ccccCCCCCcEEEccCCcCcccc--cccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc
Q 005619 298 EGNIP-VQFNNLAILQILDISENNLSGSM--ISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373 (688)
Q Consensus 298 ~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 373 (688)
.+.++ ..+..+++|++|++++|.+.+.. +..+ .+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 86554 45889999999999999998775 4444 88999999999999988888889999999999999999987655
Q ss_pred h-hhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc---hhhhhhhhcccCCcccccceeEEecccc
Q 005619 374 H-QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP---ACITNLLFWKVGSRYLSGFVMVVMDLGV 449 (688)
Q Consensus 374 ~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 449 (688)
. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+ ..+
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------------------------- 472 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL------------------------- 472 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG-------------------------
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh-------------------------
Confidence 4 48889999999999999998888899999999999999999875221 111
Q ss_pred cccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCC
Q 005619 450 ADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHN 529 (688)
Q Consensus 450 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N 529 (688)
..++.|+.|++++|++++..|..|+.+++|+.|+|++|
T Consensus 473 ------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 473 ------------------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ------------------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ------------------------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 12678999999999999999999999999999999999
Q ss_pred cCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC
Q 005619 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586 (688)
Q Consensus 530 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 586 (688)
++++.+|..+++++.| .|+|++|++++.+|..+..+++|++|++++|++.|.|+..
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 9999999999999999 9999999999999999999999999999999999998753
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.4e-55 Score=487.29 Aligned_cols=534 Identities=19% Similarity=0.169 Sum_probs=355.9
Q ss_pred CCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCC
Q 005619 3 SNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLG 82 (688)
Q Consensus 3 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 82 (688)
+++++.+ |..+. ++|++|+|++|.+++ ++...|.++++|++|++++|.+. .+++.+|.++++|++|++++|.+.
T Consensus 20 ~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 20 DQKLSKV-PDDIP--SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TSCCSSC-CTTSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCcccC-CCCCC--CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence 3444433 43333 677777777777764 33346777777777777777654 344445777777777777777775
Q ss_pred Cc-chhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC---CCCCcCEEEccCCCCCCCCChh
Q 005619 83 VI-PNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQN 158 (688)
Q Consensus 83 ~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~ 158 (688)
.+ |..+.++++|++|++++|.+++..+.. +.++++|++|++++|.+++...+. .+++|++|++++|++++..+..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 55 666777777777777777776333233 457777777777777776543332 5677777777777777444433
Q ss_pred hhhcCCC----CCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEc--------------
Q 005619 159 MGIVLPK----LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL-------------- 220 (688)
Q Consensus 159 ~~~~l~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L-------------- 220 (688)
+. .+++ +++|++++|.+++..+..+... +|++|++++|.+.+......+..++.|+.+++
T Consensus 173 ~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 173 LQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TH-HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hh-hhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 32 3333 3467777777775544444433 67777777776654444444555666655554
Q ss_pred -------------------ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhh
Q 005619 221 -------------------SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281 (688)
Q Consensus 221 -------------------~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 281 (688)
..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+|. +
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~ 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C
T ss_pred ChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C
Confidence 34445544444 6677777777777777753 44 666777777777777777 45663 3
Q ss_pred hCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccc--cccc-ccCccceEeeecCccccCCchhccCCCCc
Q 005619 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM--ISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSAL 358 (688)
Q Consensus 282 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 358 (688)
.+++|++|++++|...+.. .+..+++|++|++++|.+++.. +..+ .+++|++|++++|.++ .+|..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC
Confidence 7777777777777544322 4567777777777777776653 3333 6777777777777776 355667777777
Q ss_pred cEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccc-cchhhhhhhhcccCCcc
Q 005619 359 ETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPACITNLLFWKVGSRY 436 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~ 436 (688)
+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++. +|..+.
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 470 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA----------- 470 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----------
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc-----------
Confidence 777777777776665 5677777777777777777777777777777777777777777653 343332
Q ss_pred cccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhh
Q 005619 437 LSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEIC 516 (688)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 516 (688)
.+++|+.|++++|++++..|..|+
T Consensus 471 --------------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 471 --------------------------------------------------------NTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp --------------------------------------------------------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred --------------------------------------------------------cCCCCCEEECCCCcCCccChhhhc
Confidence 267899999999999999999999
Q ss_pred ccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC-CCCEEecCCCcCccCCCCCcccCCcCcc
Q 005619 517 DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYNDLSGPIPDKEQFSTFDES 595 (688)
Q Consensus 517 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~~~ 595 (688)
.+++|+.|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++|++++|++.|.|+... +..|.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~-~~~~l-- 570 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK-FLQWV-- 570 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH-HHTTT--
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH-HHHHH--
Confidence 9999999999999999989999999999999999999999 5667788887 59999999999999987632 22221
Q ss_pred ccCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 005619 596 SYRGNLHLCGPPINKSCTNLLELLETSSKGAE 627 (688)
Q Consensus 596 ~~~~n~~l~~~p~~~~C~~~~~~~~~~~~~~~ 627 (688)
..+......+....|..|....+....+.+
T Consensus 571 --~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~ 600 (606)
T 3vq2_A 571 --KEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600 (606)
T ss_dssp --TTSSSSBSSGGGCCCC--------------
T ss_pred --HcCcccccCCccceeCCChHhCCCEeeecc
Confidence 112222223345677766544444433333
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-52 Score=469.19 Aligned_cols=505 Identities=22% Similarity=0.234 Sum_probs=420.5
Q ss_pred CCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhhhCCCCCCEEE
Q 005619 20 LEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFLLHQFNLKYLD 98 (688)
Q Consensus 20 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ 98 (688)
-+.++.++..++. +| ..+. +.+++|++++|.+. .+++..|.++++|++|++++|.+..+ |..+.++++|++|+
T Consensus 14 ~~~~~c~~~~l~~--iP-~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 14 NKTYNCENLGLNE--IP-GTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TTEEECTTSCCSS--CC-TTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CceEECCCCCccc--Cc-CCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeee
Confidence 4578888888874 66 2343 47999999999875 45556799999999999999999766 78899999999999
Q ss_pred CCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC--CCCCCCCcCEEEccCCCCCCC-CChhhhhcCCCCCEEEccCCC
Q 005619 99 LSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ--LTSAQHGLISLDISSNNFTGK-LPQNMGIVLPKLDCMNISKNS 175 (688)
Q Consensus 99 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~l~~n~ 175 (688)
+++|++++..|.. +.++++|++|++++|.+++.. ....+++|++|++++|++++. .|... .+++|++|++++|.
T Consensus 88 Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 88 LTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNA 164 (606)
T ss_dssp CTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC--CCTTCCEEECCSSC
T ss_pred CCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc--CCcccCEEEcccCc
Confidence 9999999666655 469999999999999999863 344889999999999999852 24433 49999999999999
Q ss_pred CCcccchhhhcCCCCC--EEEccCCcCccccCchhhcCCCCCCEEEcccCcCC--------------------------C
Q 005619 176 FEGNIPSSIGKMQGLR--LLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD--------------------------G 227 (688)
Q Consensus 176 l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~--------------------------~ 227 (688)
+++..+..++.+++|+ +|++++|.+.+. +...+ ...+|+.|++++|... .
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEE-CTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCcc-ChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 9988899999999999 999999999854 44444 3467889998877410 0
Q ss_pred cCcccccCCC--CCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccc
Q 005619 228 QIFPNYVNLT--RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305 (688)
Q Consensus 228 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 305 (688)
..+..+..+. +|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 1112222222 7899999999999888888999999999999999998 677888999999999999999998888889
Q ss_pred cCCCCCcEEEccCCcCccccccc-c-ccCccceEeeecCccccCC--chhccCCCCccEEeCcCCcCCCcCchhhhcCCC
Q 005619 306 NNLAILQILDISENNLSGSMIST-L-NLSSVEHLYLQSNALGGSI--PNTIFRGSALETLDLRDNYFFGRIPHQINEHSN 381 (688)
Q Consensus 306 ~~l~~L~~L~Ls~n~l~~~~~~~-~-~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 381 (688)
..+++|++|++++|.+.+..+.. + .+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 99999999999999988655443 4 8899999999999998655 677888999999999999998888889999999
Q ss_pred ccEEeccCCcCCCCCch-hhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccce
Q 005619 382 LRALLLRGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTV 460 (688)
Q Consensus 382 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (688)
|+.|++++|++.+..+. .+..+++|+.|++++|.+++..|..+..
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 447 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------------------- 447 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------------
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------------
Confidence 99999999999877654 4889999999999999998776665533
Q ss_pred ecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc---CChhhhccCCCCeeeCCCCcCccCCCc
Q 005619 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD---IPSEICDLQNIHGLNLSHNFLSGSIPE 537 (688)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 537 (688)
+++|+.|++++|.+++. .+..+..+++|+.|+|++|++++.+|.
T Consensus 448 ---------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 448 ---------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp ---------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred ---------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 57899999999999873 346799999999999999999999999
Q ss_pred cccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC-cccCCcCccccCCCCCCC
Q 005619 538 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK-EQFSTFDESSYRGNLHLC 604 (688)
Q Consensus 538 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l~ 604 (688)
.|+++++|+.|+|++|++++.+|..+.+++.| +|++++|++++..|.. ..+..+......+|+..|
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999999999999999999999999 9999999999877754 344555566666666554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-52 Score=462.27 Aligned_cols=501 Identities=20% Similarity=0.194 Sum_probs=407.5
Q ss_pred CCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhhhCCCCCCEE
Q 005619 19 SLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFLLHQFNLKYL 97 (688)
Q Consensus 19 ~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L 97 (688)
.-++++.+++.++. +|. .+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+.++++|++|
T Consensus 12 ~~~~~~c~~~~l~~--ip~-~~--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 12 PNITYQCMDQKLSK--VPD-DI--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp TTTEEECTTSCCSS--CCT-TS--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCceEccCCCccc--CCC-CC--CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 35689999999984 663 33 388999999999875 45555799999999999999999777 6678999999999
Q ss_pred ECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC--CCCCCCcCEEEccCCCCCC-CCChhhhhcCCCCCEEEccCC
Q 005619 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL--TSAQHGLISLDISSNNFTG-KLPQNMGIVLPKLDCMNISKN 174 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~l~~n 174 (688)
++++|.+++..|.. +.++++|++|++++|.+++.+. ...+++|++|++++|.+++ .+|..+. .+++|++|++++|
T Consensus 86 ~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 86 ILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYN 163 (606)
T ss_dssp ECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSS
T ss_pred ECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCC
Confidence 99999999655665 4699999999999999987653 3488999999999999985 5788776 7999999999999
Q ss_pred CCCcccchhhhcCCCCC----EEEccCCcCccccCchhhcCCCCCCEEEcccCcCC-CcCcccccCCCCCCEEec-----
Q 005619 175 SFEGNIPSSIGKMQGLR----LLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD-GQIFPNYVNLTRLLFLYL----- 244 (688)
Q Consensus 175 ~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L----- 244 (688)
.+++..+..++.+++|+ +|++++|.+. .++...+... +|+.|++++|.+. +..+..+.+++.++.+++
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred cceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 99988888888776655 8999999998 6777666555 8999999999886 344556667777776665
Q ss_pred ----------------------------cCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc
Q 005619 245 ----------------------------DNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296 (688)
Q Consensus 245 ----------------------------~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (688)
..+.+.+..+. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCC
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEccccc
Confidence 44555555555 7777888888888888864 45 67788888888888888
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccC--CchhccCCCCccEEeCcCCcCCCcCch
Q 005619 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGS--IPNTIFRGSALETLDLRDNYFFGRIPH 374 (688)
Q Consensus 297 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~ 374 (688)
+ +.+| .+ .+++|++|++++|+..+.. ....+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|.
T Consensus 319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 319 L-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp C-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred C-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 8 4666 45 8888888888888655433 233788888899988888755 37778888888999998888755 457
Q ss_pred hhhcCCCccEEeccCCcCCCCCc-hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccc
Q 005619 375 QINEHSNLRALLLRGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIR 453 (688)
Q Consensus 375 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (688)
.+..+++|+.|++++|++.+..| ..+..+++|++|++++|.+++..|..+.+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------- 446 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------------------------- 446 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC---------------------------
Confidence 78888888999999888887776 67888888999999888888766665533
Q ss_pred cccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc-cCChhhhccCCCCeeeCCCCcCc
Q 005619 454 NYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG-DIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 454 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
+++|+.|++++|.+++ .+|..|+.+++|+.|+|++|+++
T Consensus 447 ----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 447 ----------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp ----------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred ----------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 5789999999999998 47999999999999999999999
Q ss_pred cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC-cccC-CcCccccCCCCCCCC
Q 005619 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK-EQFS-TFDESSYRGNLHLCG 605 (688)
Q Consensus 533 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~n~~l~~ 605 (688)
+.+|..|+++++|++|+|++|++++.+|..+.++++|++|++++|+++ .+|.. ..+. .+......+|+..|+
T Consensus 487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 999999999999999999999999999999999999999999999999 46654 2232 345555666665554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-51 Score=469.10 Aligned_cols=519 Identities=23% Similarity=0.227 Sum_probs=420.6
Q ss_pred CEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC-CCc-chhhhCCCCCCEEE
Q 005619 21 EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL-GVI-PNFLLHQFNLKYLD 98 (688)
Q Consensus 21 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l-p~~~~~l~~L~~L~ 98 (688)
+..|.+++.++. +|. -.++|+.|+|++|.+. .+....|.++++|++|++++|.. ..+ |..+.++++|++|+
T Consensus 7 ~~~dcs~~~L~~--vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQ--VPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSC--CCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCCC--CCC----CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 467888888885 672 5689999999999865 44556799999999999999965 677 77899999999999
Q ss_pred CCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC----CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCC
Q 005619 99 LSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL----TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174 (688)
Q Consensus 99 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (688)
|++|.+++..|..+ .++++|++|++++|.+++... ...+++|++|++++|.+++..+...+..+++|++|++++|
T Consensus 80 Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 80 LGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 99999996666654 699999999999999986322 3478999999999999986655444558999999999999
Q ss_pred CCCcccchhhhcC--CCCCEEEccCCcCccccCchhhcCCC------CCCEEEcccCcCCCcCcccccC---CCCCCEEe
Q 005619 175 SFEGNIPSSIGKM--QGLRLLDVSSNKFAGELSQSPVTNCF------SLEWLQLSNNNFDGQIFPNYVN---LTRLLFLY 243 (688)
Q Consensus 175 ~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~---l~~L~~L~ 243 (688)
.+++..+..+..+ ++|+.|++++|.+.+..+... ..++ .|+.|++++|.+++..+..+.. .++++.+.
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 9999899999887 899999999999987666542 3333 4999999999988777766653 36788888
Q ss_pred ccCC---------cCCCcccccccCC--CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCc
Q 005619 244 LDNN---------HFSGKIKDGLLRS--SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312 (688)
Q Consensus 244 L~~n---------~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 312 (688)
++.+ .+.+.....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 7733 3333333444443 7899999999999988899999999999999999999988899999999999
Q ss_pred EEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCc
Q 005619 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNY 391 (688)
Q Consensus 313 ~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 391 (688)
+|++++|.+++..+..+ .+++|++|++++|.+.+..+..+..+++|++|++++|.+++. ..+++|+.|++++|+
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK 392 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC
Confidence 99999999998877777 899999999999999977777889999999999999999643 237899999999999
Q ss_pred CCCCCchhhcCCCCCCEEEccCCcCccccch-hhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCC
Q 005619 392 LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA-CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470 (688)
Q Consensus 392 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (688)
++ .+|.. ..+++.|++++|++++.... .+.+++.
T Consensus 393 l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~----------------------------------------- 427 (844)
T 3j0a_A 393 LV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPH----------------------------------------- 427 (844)
T ss_dssp CC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTT-----------------------------------------
T ss_pred cc-ccccc---ccccceeecccCccccCchhhhhhcCCc-----------------------------------------
Confidence 98 45543 56899999999999864322 1222110
Q ss_pred CCCcceEEEeeecccccccc----ccccccccEEEccCCccc-----ccCChhhhccCCCCeeeCCCCcCccCCCccccC
Q 005619 471 SLGTQVEVNFMTKNRYESYK----GVILDYMAGLDLSSNKLT-----GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSN 541 (688)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~----~~~l~~L~~LdLs~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 541 (688)
++...+..+.+.... ...+++|+.|+|++|.++ +..|..|..+++|+.|+|++|++++.+|..|++
T Consensus 428 -----L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 428 -----LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp -----CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred -----cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 111112222222111 122678999999999997 455677899999999999999999999999999
Q ss_pred CCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCCC
Q 005619 542 LKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPP 607 (688)
Q Consensus 542 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p 607 (688)
+++|+.|+|++|++++..|..+. ++|++||+++|++++.+|.. +..+....+.+|+..|+.+
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 99999999999999988887776 89999999999999998854 5566777778888877654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-50 Score=442.61 Aligned_cols=492 Identities=19% Similarity=0.207 Sum_probs=382.9
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCE
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKY 96 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~ 96 (688)
+++++|++++|.+++ ++...|.++++|++|++++|.+. .++..+|.++++|++|++++|.+..+| ..+..+++|++
T Consensus 28 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 578888888888875 33357888888888888888654 455556888888888888888887664 67888888888
Q ss_pred EECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC---CCCCcCEEEccCCCCCCCCChhhhhcCCCC----CEE
Q 005619 97 LDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQNMGIVLPKL----DCM 169 (688)
Q Consensus 97 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L----~~L 169 (688)
|++++|+++ .++...+.++++|++|++++|.+++...+. .+++|++|++++|.+++..+..+ ..+++| +++
T Consensus 105 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L 182 (570)
T 2z63_A 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSL 182 (570)
T ss_dssp EECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEE
T ss_pred ccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhc
Confidence 888888887 444433567888888888888887654333 57788888888888874434434 356666 788
Q ss_pred EccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC------CcCcccccCCC--CCCE
Q 005619 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD------GQIFPNYVNLT--RLLF 241 (688)
Q Consensus 170 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~--~L~~ 241 (688)
++++|.+++..+..+... +|++|++++|..........+..++.++.+.+....+. ......+..++ .++.
T Consensus 183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 888888887767666655 68888888775443222333456666666555433221 11122233333 3566
Q ss_pred EeccCC-cCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCc
Q 005619 242 LYLDNN-HFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENN 320 (688)
Q Consensus 242 L~L~~n-~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 320 (688)
++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 777766 666677788888899999999999988 577778888 9999999999988 4444 477899999999998
Q ss_pred CccccccccccCccceEeeecCccccCC--chhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc-
Q 005619 321 LSGSMISTLNLSSVEHLYLQSNALGGSI--PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP- 397 (688)
Q Consensus 321 l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 397 (688)
+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+
T Consensus 337 ~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 337 GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp SCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 8766554 57889999999999988554 67788899999999999998765544 8899999999999999987665
Q ss_pred hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceE
Q 005619 398 HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVE 477 (688)
Q Consensus 398 ~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (688)
..+..+++|++|++++|.+++..|..+..
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------------- 443 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------------------- 443 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------------------------------
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhc---------------------------------------------------
Confidence 56888999999999999998776655432
Q ss_pred EEeeeccccccccccccccccEEEccCCccc-ccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 478 VNFMTKNRYESYKGVILDYMAGLDLSSNKLT-GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
+++|+.|++++|.++ +.+|..+..+++|+.|+|++|++++..|..|+++++|++|++++|+++
T Consensus 444 ----------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 444 ----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp ----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 578999999999998 678999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCEEecCCCcCccCCCCCccc
Q 005619 557 GQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 589 (688)
+.+|..+.++++|++|++++|+++|.||....+
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 998889999999999999999999999976544
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-48 Score=431.26 Aligned_cols=487 Identities=18% Similarity=0.183 Sum_probs=355.1
Q ss_pred CCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEE
Q 005619 19 SLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYL 97 (688)
Q Consensus 19 ~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L 97 (688)
...+.|.+++.++. +|. .+ .++|++|++++|.+. .+++..+.++++|++|++++|++..++ ..+..+++|++|
T Consensus 6 ~~~~c~~~~~~l~~--ip~-~~--~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 6 ASGVCDGRSRSFTS--IPS-GL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp TTSEEECTTSCCSS--CCS-CC--CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCceEECCCCcccc--ccc-cC--CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 33445666666653 442 22 256666677666643 333345666777777777777775553 566777777777
Q ss_pred ECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC---CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCC
Q 005619 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL---TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (688)
++++|++++ ++...+.++++|++|++++|.+++... ...+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus 80 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 80 DLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 777777763 333334577777777777777765432 2356777777777777544666544457788888888888
Q ss_pred CCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcC---cccccCCCCCCEEeccCCcCCC
Q 005619 175 SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI---FPNYVNLTRLLFLYLDNNHFSG 251 (688)
Q Consensus 175 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~ 251 (688)
.+++..|..++.+++|++|++++|.+. .++...+..+++|+.|++++|.+++.. ......+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 888777788888888888888888765 566665566788888888888877532 1223456778888888887765
Q ss_pred ccc----ccccCCCCCCEEEccCCcCCCCC------chhhhCCcCCcEEEccccccCCC-----CcccccCCCCCcEEEc
Q 005619 252 KIK----DGLLRSSELMVLDISNNHLSGHI------PSWMGNFSNLYILSMSKNLLEGN-----IPVQFNNLAILQILDI 316 (688)
Q Consensus 252 ~~~----~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L 316 (688)
..+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... .+..+...++|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 433 23355678888888888765421 12345677888888888766532 2223345678999999
Q ss_pred cCCcCcccccccc-ccCccceEeeecCccccCCch---hccCCCCccEEeCcCCcCCCcCc--hhhhcCCCccEEeccCC
Q 005619 317 SENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPN---TIFRGSALETLDLRDNYFFGRIP--HQINEHSNLRALLLRGN 390 (688)
Q Consensus 317 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n 390 (688)
++|.+...+...+ .+++|++|++++|.+++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 9999886655554 689999999999999876643 36778999999999999976543 56889999999999999
Q ss_pred cCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCC
Q 005619 391 YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470 (688)
Q Consensus 391 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (688)
+++ .+|..+..+++|++|++++|+++ .+|.++
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---------------------------------------------- 429 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---------------------------------------------- 429 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS----------------------------------------------
T ss_pred CCc-cCChhhcccccccEEECCCCCcc-cccchh----------------------------------------------
Confidence 998 67888889999999999999987 233211
Q ss_pred CCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeC
Q 005619 471 SLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 550 (688)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 550 (688)
.+.|+.||+++|++++.+ ..+++|+.|+|++|+++ .+|. .+.+++|+.|||
T Consensus 430 -----------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 430 -----------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKI 480 (549)
T ss_dssp -----------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEEC
T ss_pred -----------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEec
Confidence 356899999999999754 47899999999999999 6776 567999999999
Q ss_pred CCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccC
Q 005619 551 SHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590 (688)
Q Consensus 551 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 590 (688)
++|++++.+|..+..+++|++|++++|++.|.||...++.
T Consensus 481 s~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~ 520 (549)
T 2z81_A 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520 (549)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHH
T ss_pred CCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHH
Confidence 9999999999999999999999999999999998544443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=414.54 Aligned_cols=459 Identities=21% Similarity=0.213 Sum_probs=371.9
Q ss_pred cceeEEECCCCCCCCc-chhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC--CCCCCCcCEEE
Q 005619 69 FQLKVLSLPNCNLGVI-PNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL--TSAQHGLISLD 145 (688)
Q Consensus 69 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~ 145 (688)
+++++|++++|.++.+ +..+.++++|++|++++|++++ ++...+.++++|++|++++|.++.... ...+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4799999999999777 4578999999999999999984 544456799999999999999987643 34789999999
Q ss_pred ccCCCCCCCCChhhhhcCCCCCEEEccCCCCCc-ccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCC----CEEEc
Q 005619 146 ISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG-NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL----EWLQL 220 (688)
Q Consensus 146 ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L 220 (688)
+++|+++ .++...+..+++|++|++++|.+++ .+|..++++++|++|++++|.+. .++...+..+++| +.+++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence 9999998 5555334589999999999999987 36899999999999999999998 5555556677777 89999
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCC-cccccccCCC--------------------------------CCCEEE
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG-KIKDGLLRSS--------------------------------ELMVLD 267 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~--------------------------------~L~~L~ 267 (688)
++|.+++..+..+... +|+.|++++|.... ..+..+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999998877777665 89999999874321 1111122222 245556
Q ss_pred ccCC-cCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCcccc
Q 005619 268 ISNN-HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGG 346 (688)
Q Consensus 268 Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 346 (688)
++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+...+. ..+++|++|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccc
Confidence 6665 566677788888899999999999887 567777777 89999999998884443 367889999999998876
Q ss_pred CCchhccCCCCccEEeCcCCcCCCcC--chhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccch-h
Q 005619 347 SIPNTIFRGSALETLDLRDNYFFGRI--PHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA-C 423 (688)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~ 423 (688)
..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++..|. .
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 5554 67789999999999887654 67888899999999999998865444 88899999999999988765442 1
Q ss_pred hhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEcc
Q 005619 424 ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLS 503 (688)
Q Consensus 424 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 503 (688)
+ ..+++|+.|+++
T Consensus 417 ~-------------------------------------------------------------------~~l~~L~~L~l~ 429 (570)
T 2z63_A 417 F-------------------------------------------------------------------LSLRNLIYLDIS 429 (570)
T ss_dssp T-------------------------------------------------------------------TTCTTCCEEECT
T ss_pred h-------------------------------------------------------------------hcCCCCCEEeCc
Confidence 2 126789999999
Q ss_pred CCcccccCChhhhccCCCCeeeCCCCcCc-cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccC
Q 005619 504 SNKLTGDIPSEICDLQNIHGLNLSHNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 504 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 582 (688)
+|.+++..|..|..+++|+.|+|++|.++ +.+|..++.+++|+.|++++|++++..|..+..+++|++|++++|++++.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99999999999999999999999999998 67999999999999999999999999999999999999999999999987
Q ss_pred CCCC-cccCCcCccccCCCCCCCC
Q 005619 583 IPDK-EQFSTFDESSYRGNLHLCG 605 (688)
Q Consensus 583 ~p~~-~~~~~~~~~~~~~n~~l~~ 605 (688)
.|.. ..+..+....+.+|+..|.
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHHHhhcccCCcEEEecCCcccCC
Confidence 7654 4455555555666654443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-48 Score=431.16 Aligned_cols=433 Identities=19% Similarity=0.263 Sum_probs=277.1
Q ss_pred cceeEEECCCCCC-CCcchhhhCCCCCCEEECCCCcC------CC------CCchHHhhCCCCCcEEEccCCCCCCCCCC
Q 005619 69 FQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKL------AG------NFPTWLLENNTKLEVLYLTNNSFSGFQLT 135 (688)
Q Consensus 69 ~~L~~L~l~~n~l-~~lp~~~~~l~~L~~L~Ls~n~l------~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 135 (688)
.+++.|+|+++.+ +.+|..++++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.+.+....
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 4788889998888 67888888999999999988865 22 334332 23344 44444443332110
Q ss_pred C---------------------CCCCcCEEEcc--CCCCCCCCChhhhhcCCCCCEEEccCCCCCcc-------------
Q 005619 136 S---------------------AQHGLISLDIS--SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN------------- 179 (688)
Q Consensus 136 ~---------------------~~~~L~~L~ls--~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 179 (688)
. ....++.+.+. .|++++ +|..+. ++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccch
Confidence 0 01112222222 456665 666654 577777777777777764
Q ss_pred ----cchhhh--cCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc-CCC-cCcccccCC------CCCCEEecc
Q 005619 180 ----IPSSIG--KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN-FDG-QIFPNYVNL------TRLLFLYLD 245 (688)
Q Consensus 180 ----~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~ 245 (688)
+|+.++ ++++|++|++++|.+.+.+|.. +.++++|++|++++|. +++ .+|..+..+ ++|++|+++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 666666 7777777777777776666644 4567777777777776 665 566655554 677777777
Q ss_pred CCcCCCcccc--cccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCC-CcEEEccCCcCc
Q 005619 246 NNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI-LQILDISENNLS 322 (688)
Q Consensus 246 ~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~ 322 (688)
+|.++ .+|. .+..+++|++|++++|.+++.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++
T Consensus 314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 77776 5665 66777777777777777776666 6666777777777777766 55666667776 777777777776
Q ss_pred cccccccc--cCccceEeeecCccccCCchhcc-------CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC
Q 005619 323 GSMISTLN--LSSVEHLYLQSNALGGSIPNTIF-------RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 323 ~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 393 (688)
..+..... +++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 43322222 33677777777777766666665 5566777777777776443344455677777777777776
Q ss_pred CCCchhhcCC-------CCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCC
Q 005619 394 GPIPHQLCQL-------RKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466 (688)
Q Consensus 394 ~~~~~~~~~l-------~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (688)
...+..+... ++|+.|++++|+++ .+|..+..
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------- 509 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------------- 509 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------------
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------------
Confidence 3222223222 26777777777776 45543320
Q ss_pred CCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeC------CCCcCccCCCcccc
Q 005619 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL------SHNFLSGSIPESFS 540 (688)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~ 540 (688)
..+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..++
T Consensus 510 -------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 510 -------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp -------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred -------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 014567777777777776 6777777777777777 45666777777777
Q ss_pred CCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 541 NLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 541 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
++++|+.|+|++|++ +.+|..+. ++|++||+++|++.+
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 777777777777777 46666654 677777777776664
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-45 Score=406.95 Aligned_cols=473 Identities=19% Similarity=0.230 Sum_probs=382.4
Q ss_pred CCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC
Q 005619 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL 81 (688)
Q Consensus 2 s~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 81 (688)
++|+++.+ |..+. ++|++|+|++|.+++ ..| ..+.++++|++|++++|.+. .+++.+|..+++|++|++++|.+
T Consensus 13 ~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~-~~~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 13 RSRSFTSI-PSGLT--AAMKSLDLSFNKITY-IGH-GDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp TTSCCSSC-CSCCC--TTCCEEECCSSCCCE-ECS-STTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCccccc-cccCC--CCccEEECcCCccCc-cCh-hhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCcc
Confidence 45667754 54443 799999999999986 333 57999999999999999865 45556799999999999999999
Q ss_pred CCcch-hhhCCCCCCEEECCCCcCCCC-CchHHhhCCCCCcEEEccCCC-CCCCC--CCCCCCCcCEEEccCCCCCCCCC
Q 005619 82 GVIPN-FLLHQFNLKYLDLSHNKLAGN-FPTWLLENNTKLEVLYLTNNS-FSGFQ--LTSAQHGLISLDISSNNFTGKLP 156 (688)
Q Consensus 82 ~~lp~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~~L~~L~ls~n~~~~~~~ 156 (688)
..+|. .+..+++|++|++++|.+++. .|. .+.++++|++|++++|. +...+ ....+++|++|++++|.+++.+|
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 77755 599999999999999999853 344 35689999999999998 44432 23478899999999999998788
Q ss_pred hhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCcccc--CchhhcCCCCCCEEEcccCcCCCcCc----
Q 005619 157 QNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGEL--SQSPVTNCFSLEWLQLSNNNFDGQIF---- 230 (688)
Q Consensus 157 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~---- 230 (688)
..+. .+++|++|++++|.+.......+..+++|++|++++|.+.+.. +......+++|+.|++++|.+++..+
T Consensus 166 ~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 8776 7999999999999987443333467999999999999998532 33334567899999999998875443
Q ss_pred ccccCCCCCCEEeccCCcCCCcc------cccccCCCCCCEEEccCCcCCCC-----CchhhhCCcCCcEEEccccccCC
Q 005619 231 PNYVNLTRLLFLYLDNNHFSGKI------KDGLLRSSELMVLDISNNHLSGH-----IPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 231 ~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
..+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+... .+..+...++|++|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 33467889999999999876532 12356678999999999877532 2333455679999999999998
Q ss_pred CCcccc-cCCCCCcEEEccCCcCcccccc---cc-ccCccceEeeecCccccCCc--hhccCCCCccEEeCcCCcCCCcC
Q 005619 300 NIPVQF-NNLAILQILDISENNLSGSMIS---TL-NLSSVEHLYLQSNALGGSIP--NTIFRGSALETLDLRDNYFFGRI 372 (688)
Q Consensus 300 ~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~~-~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~ 372 (688)
.+|..+ ..+++|++|++++|++.+..+. .+ .+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 555555 6899999999999999986532 23 78999999999999985432 45888999999999999996 57
Q ss_pred chhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccc
Q 005619 373 PHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI 452 (688)
Q Consensus 373 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (688)
|..+..+++|++|++++|++++ +|..+ .++|++|++++|++++.++
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~------------------------------- 448 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL------------------------------- 448 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC-------------------------------
T ss_pred ChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc-------------------------------
Confidence 8888899999999999999984 44433 2689999999999985321
Q ss_pred ccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCc
Q 005619 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
.++.|+.|||++|+++ .+|. ...+++|+.|+|++|+++
T Consensus 449 ----------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 449 ----------------------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ----------------------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 1578999999999999 6665 578999999999999999
Q ss_pred cCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 533 GSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 533 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+.+|..++.+++|+.|++++|++++..|
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999999999998766
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-46 Score=407.81 Aligned_cols=436 Identities=19% Similarity=0.209 Sum_probs=298.2
Q ss_pred ceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccC
Q 005619 70 QLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISS 148 (688)
Q Consensus 70 ~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~ 148 (688)
+|++|++++|.+..++ ..+.++++|++|++++|++++..|.. +.++++|++|++++|+++.++.. .+++|++|++++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 4444555555554332 34555555555555555555332332 23555555555555555544333 455566666666
Q ss_pred CCCCC-CCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCC--CEEEccCCcC--ccccCchhhcCCC-CCCEEEccc
Q 005619 149 NNFTG-KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLDVSSNKF--AGELSQSPVTNCF-SLEWLQLSN 222 (688)
Q Consensus 149 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~ 222 (688)
|.+++ .+|..+. .+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|.. +..+. ....+++++
T Consensus 100 N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 100 NAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPT 174 (520)
T ss_dssp SCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCS
T ss_pred Cccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEecc
Confidence 65553 3445444 56666666666666654 345555555 6666666666 4333332 12222 122455566
Q ss_pred CcCCCcCc-ccccCCCCCCEEeccCCc-------CCCcccccccCCCCCCEEEccCCcCCCCCchhhh---CCcCCcEEE
Q 005619 223 NNFDGQIF-PNYVNLTRLLFLYLDNNH-------FSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG---NFSNLYILS 291 (688)
Q Consensus 223 n~i~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~ 291 (688)
|.+.+..+ ..+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+++..+..+. ..++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 65554333 345566777777777765 444444 566777888888877776643222221 245788888
Q ss_pred ccccccCCCCcccc-----cCCCCCcEEEccCCcCcccccccc-c---cCccceEeeecCccccCCchhccCCCCccEEe
Q 005619 292 MSKNLLEGNIPVQF-----NNLAILQILDISENNLSGSMISTL-N---LSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362 (688)
Q Consensus 292 l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~-~---~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 362 (688)
+++|.+.+.+|..+ ..+++|+.+++++|.+ ..+...+ . ..+|+.|++++|.+.+.. ....+++|++|+
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 88888887778777 7888888888888888 3321222 2 257899999999886432 125778999999
Q ss_pred CcCCcCCCcCchhhhcCCCccEEeccCCcCCC--CCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccc
Q 005619 363 LRDNYFFGRIPHQINEHSNLRALLLRGNYLQG--PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGF 440 (688)
Q Consensus 363 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~ 440 (688)
+++|++++..|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|....
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--------------- 395 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------------- 395 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC---------------
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh---------------
Confidence 99999998888899999999999999999986 4567899999999999999999875664210
Q ss_pred eeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCC
Q 005619 441 VMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520 (688)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 520 (688)
..++.|+.|++++|++++..|..+. ++
T Consensus 396 ---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 396 ---------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp ---------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ---------------------------------------------------ccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 1157899999999999988887664 79
Q ss_pred CCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 521 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.|+.
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999 7888888999999999999999954444499999999999999999998874
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-45 Score=411.69 Aligned_cols=524 Identities=19% Similarity=0.172 Sum_probs=342.6
Q ss_pred CchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch-hh
Q 005619 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN-FL 88 (688)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~ 88 (688)
+|..+. +++++|||++|.|+. ++...|.++++|++|+|++|.+. .++..+|.++++|++|+|++|+++.+|. .+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred cCCCCC--cCCCEEEeeCCCCCC--CCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 344443 478999999999985 55567899999999999988754 5666678899999999999999988864 57
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC---CCCCcCEEEccCCCCCCCCChhhhhcCCC
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQNMGIVLPK 165 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~~l~~ 165 (688)
.++++|++|++++|+++ .++...++++++|++|++++|.++....+. .+++|++|++++|++++..+..+. .+.+
T Consensus 121 ~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~ 198 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQ 198 (635)
T ss_dssp TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHT
T ss_pred cCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhh
Confidence 88999999999999998 556555678999999999999988765443 678899999999998854444433 3333
Q ss_pred ----CCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcC------CCcCccccc-
Q 005619 166 ----LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF------DGQIFPNYV- 234 (688)
Q Consensus 166 ----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~- 234 (688)
...++++.|.+....+..+ ....++.+++.+|.....+....+..+..++...+..+.. .......+.
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 4468888888875544443 3345677788777655444455555666666555433221 111112222
Q ss_pred --------------------------CCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCc
Q 005619 235 --------------------------NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288 (688)
Q Consensus 235 --------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 288 (688)
...+++.+.+.++.+... ..+.....++.|++.+|.+.+..+. .+..|+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~ 352 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLK 352 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCC
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhh
Confidence 233444444444443321 1233344555555555555433221 234555
Q ss_pred EEEccccccCCCCcccccCCCCCcEEEccCCcCccccccc--c-ccCccceEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 289 ILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST--L-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 289 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
.+++..|..... .....+++|+.+++++|.+....... . .+.+|+.+++..+... ..+..+..+++|+.++++.
T Consensus 353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTT
T ss_pred hcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhh
Confidence 555555544322 22334556666666666554322211 1 4555666666665554 3334455556666666665
Q ss_pred CcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccc-cchhhhhhhhcccCCcccccceeE
Q 005619 366 NYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPACITNLLFWKVGSRYLSGFVMV 443 (688)
Q Consensus 366 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~~~~~~~~ 443 (688)
+......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|++++|++.+. .|..+
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~------------------- 490 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------------- 490 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh-------------------
Confidence 55433322 3445566666666666666665666666666666666666653321 22221
Q ss_pred EecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
..+++|+.|||++|++++..|..|+++++|++
T Consensus 491 ------------------------------------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 491 ------------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp ------------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ------------------------------------------------hhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 12678999999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCC-CCCCEEecCCCcCccCCCCCcccCCcCccccCCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLH 602 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 602 (688)
|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+ ++|++|++++|+++|.|.. .+|..|-.. +..
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~-~~~~~wl~~----~~~ 597 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKD----QRQ 597 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG-HHHHHHHHH----TTT
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc-HHHHHHHHh----CCC
Confidence 9999999999999999999999999999999999999999998 6899999999999999963 333333211 111
Q ss_pred CCCCCCCCCCCCccccccc
Q 005619 603 LCGPPINKSCTNLLELLET 621 (688)
Q Consensus 603 l~~~p~~~~C~~~~~~~~~ 621 (688)
....+....|..|....+.
T Consensus 598 ~~~~~~~~~C~~P~~~~g~ 616 (635)
T 4g8a_A 598 LLVEVERMECATPSDKQGM 616 (635)
T ss_dssp TBSCGGGCBBCSSTTTTTC
T ss_pred ccCCCCCceeCCchHHCCC
Confidence 1122234567766544443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-46 Score=419.90 Aligned_cols=443 Identities=19% Similarity=0.218 Sum_probs=367.0
Q ss_pred CCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC-----------CCC-CCCCcCEEEccCCCCCCCCChhh
Q 005619 92 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ-----------LTS-AQHGLISLDISSNNFTGKLPQNM 159 (688)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~-~~~~L~~L~ls~n~~~~~~~~~~ 159 (688)
.+++.|+|+++.++|.+|..+ +++++|++|++++|.+.... .+. .+..|+ ++++.|.+.+.+|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence 479999999999999999776 69999999999999762111 111 233566 7777777777666655
Q ss_pred hhcC------------------CCCCEEEcc--CCCCCcccchhhhcCCCCCEEEccCCcCccc----------------
Q 005619 160 GIVL------------------PKLDCMNIS--KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGE---------------- 203 (688)
Q Consensus 160 ~~~l------------------~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---------------- 203 (688)
...+ ..++.+.+. .|.+++ +|+.++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 4211 122222222 578888 899999999999999999999974
Q ss_pred -cCchhhc--CCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCc-CCC-cccccccCC------CCCCEEEccCCc
Q 005619 204 -LSQSPVT--NCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNH-FSG-KIKDGLLRS------SELMVLDISNNH 272 (688)
Q Consensus 204 -~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~------~~L~~L~Ls~n~ 272 (688)
+|..+ . ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.
T Consensus 238 ~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 77664 5 89999999999999999999999999999999999998 988 788877765 899999999999
Q ss_pred CCCCCch--hhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCc-cceEeeecCccccCCc
Q 005619 273 LSGHIPS--WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSS-VEHLYLQSNALGGSIP 349 (688)
Q Consensus 273 l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~~L~L~~n~l~~~~~ 349 (688)
++ .+|. .++.+++|++|++++|.+.|.+| .+..+++|++|++++|+++..+.....+++ |++|++++|.++ .+|
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 99 7888 89999999999999999998888 899999999999999999955444448888 999999999999 788
Q ss_pred hhccCCC--CccEEeCcCCcCCCcCchhhh-------cCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc
Q 005619 350 NTIFRGS--ALETLDLRDNYFFGRIPHQIN-------EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420 (688)
Q Consensus 350 ~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 420 (688)
..+...+ +|++|++++|++.+..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 8777654 899999999999999998888 7889999999999999655556778999999999999998 66
Q ss_pred chhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEE
Q 005619 421 PACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGL 500 (688)
Q Consensus 421 p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 500 (688)
|........ -....++.|+.|
T Consensus 473 ~~~~~~~~~-----------------------------------------------------------~~~~~l~~L~~L 493 (636)
T 4eco_A 473 PKNSLKDEN-----------------------------------------------------------ENFKNTYLLTSI 493 (636)
T ss_dssp CSSSSEETT-----------------------------------------------------------EECTTGGGCCEE
T ss_pred CHHHhcccc-----------------------------------------------------------ccccccCCccEE
Confidence 653321000 000124589999
Q ss_pred EccCCcccccCChhhh--ccCCCCeeeCCCCcCccCCCccccCCCCCCeEeC------CCCcccccCCcCCCCCCCCCEE
Q 005619 501 DLSSNKLTGDIPSEIC--DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL------SHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 501 dLs~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L 572 (688)
+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+.++++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 99999999 7888887 99999999999999997 8999999999999999 5688999999999999999999
Q ss_pred ecCCCcCccCCCCCcccCCcCccccCCCCCCCC
Q 005619 573 DVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCG 605 (688)
Q Consensus 573 ~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~ 605 (688)
++++|++ +.+|... +..+......+|+..|-
T Consensus 572 ~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 572 QIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp ECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred ECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 9999999 7888753 25666667777776553
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=404.39 Aligned_cols=450 Identities=20% Similarity=0.223 Sum_probs=316.2
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
+++|+++. +|..+. ++|++|+|++|.+++ ++...+.++++|++|++++|.+.. +.+..|.++++|++|++++|+
T Consensus 7 ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 7 RSKNGLIH-VPKDLS--QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CTTSCCSS-CCCSCC--TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSC
T ss_pred cCCCCccc-cccccc--ccccEEECCCCcccc--cChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCc
Confidence 45666664 344444 666666666666654 333456666666666666665433 222345666666666666666
Q ss_pred CCCcchhhhCCCCCCEEECCCCcCCC-CCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhh
Q 005619 81 LGVIPNFLLHQFNLKYLDLSHNKLAG-NFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNM 159 (688)
Q Consensus 81 l~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 159 (688)
++.+|.. .+++|++|++++|.+++ .+|..+ +++++|++|++++|.+++. .
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~-~------------------------- 131 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEKS-S------------------------- 131 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCGG-G-------------------------
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccchh-h-------------------------
Confidence 6656554 55666666666666653 234333 3555555555555554431 1
Q ss_pred hhcCCCC--CEEEccCCCC--CcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc-------CCC
Q 005619 160 GIVLPKL--DCMNISKNSF--EGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN-------FDG 227 (688)
Q Consensus 160 ~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------i~~ 227 (688)
+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++|. +.+
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 1234445 6666666655 445555554443 233456666666666666666677777777777765 444
Q ss_pred cCcccccCCCCCCEEeccCCcCCCcccccc---cCCCCCCEEEccCCcCCCCCchhh-----hCCcCCcEEEccccccCC
Q 005619 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGL---LRSSELMVLDISNNHLSGHIPSWM-----GNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 299 (688)
..+ .+..+++|+.|++++|.+.+..+..+ ...++|++|++++|.+++.+|..+ +.+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 333 56777788888887777664322211 123578888888888887778777 7888888899988888
Q ss_pred CCc-ccccCC---CCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCC--cCc
Q 005619 300 NIP-VQFNNL---AILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG--RIP 373 (688)
Q Consensus 300 ~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~ 373 (688)
.+| ..+..+ .+|+.|++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 344 444444 679999999998865432 1368899999999999998889999999999999999999986 566
Q ss_pred hhhhcCCCccEEeccCCcCCCCCch-hhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccc
Q 005619 374 HQINEHSNLRALLLRGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI 452 (688)
Q Consensus 374 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (688)
..+..+++|++|++++|++.+.+|. .+..+++|+.|++++|++++.+|..+
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------------------- 419 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---------------------------- 419 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----------------------------
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh----------------------------
Confidence 7899999999999999999985665 48889999999999999987665432
Q ss_pred ccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCc
Q 005619 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
.+.|+.||+++|+++ .+|..+..+++|+.|+|++|+++
T Consensus 420 -----------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 420 -----------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -----------------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 246899999999999 78888889999999999999999
Q ss_pred cCCCc-cccCCCCCCeEeCCCCcccccCC
Q 005619 533 GSIPE-SFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 533 ~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+ +|. .+..+++|+.|++++|++++..+
T Consensus 458 ~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 458 S-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 5 555 49999999999999999997543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-45 Score=415.33 Aligned_cols=474 Identities=18% Similarity=0.231 Sum_probs=274.1
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEc-cCCCCcccccccCCCC---Ccc--eeEEE---------C-CCCCC
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQL-SMEADLLQVKIENCLP---TFQ--LKVLS---------L-PNCNL 81 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L-s~~~~~~~~~~~~~~~---l~~--L~~L~---------l-~~n~l 81 (688)
.+++.|+|+++.+.| .+| ..+++|++|++|+| +.|.+.+..+...... +.. ++.+. . ....+
T Consensus 323 ~~V~~L~Ls~~~L~G-~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKG-RVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTCCEE-EEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCCCCC-cCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 578889999999888 777 57889999999999 6665544422211000 000 00000 0 00000
Q ss_pred C------------CcchhhhCCCCCCEEECCC--CcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEcc
Q 005619 82 G------------VIPNFLLHQFNLKYLDLSH--NKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147 (688)
Q Consensus 82 ~------------~lp~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls 147 (688)
. ..+........++.+.+.. |++++ +|..+ .++++|++|+|++|.+++..++.... ..+
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~-----~~s 473 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWE-----DAN 473 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCS-----CTT
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHH-hcCCCCCEEECcCCcCCCCccccccc-----ccc
Confidence 0 0000001222344444443 67775 77654 57888888888888887621111000 011
Q ss_pred CCCCCCCCChhh-hhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCc-Ccc-ccCchh------hcCCCCCCEE
Q 005619 148 SNNFTGKLPQNM-GIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK-FAG-ELSQSP------VTNCFSLEWL 218 (688)
Q Consensus 148 ~n~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~------~~~l~~L~~L 218 (688)
.|...+.+|..+ +..+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+ +..+++|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 122223344443 2245555555555555555555555555555555555555 554 444321 1233466666
Q ss_pred EcccCcCCCcCcc--cccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcC-CcEEEcccc
Q 005619 219 QLSNNNFDGQIFP--NYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSN-LYILSMSKN 295 (688)
Q Consensus 219 ~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~l~~n 295 (688)
++++|.++ .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 66666666 4455 5666666666666666666 455 5666666666666666666 56666666666 777777777
Q ss_pred ccCCCCcccccCCCC--CcEEEccCCcCcccccccc------ccCccceEeeecCccccCCchhcc-CCCCccEEeCcCC
Q 005619 296 LLEGNIPVQFNNLAI--LQILDISENNLSGSMISTL------NLSSVEHLYLQSNALGGSIPNTIF-RGSALETLDLRDN 366 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n 366 (688)
.+. .+|..+..++. |+.|++++|++.+..+... .+++|+.|++++|.++ .+|..+. .+++|+.|++++|
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 666 45555555433 7777777777766543222 3457888888888887 5555543 6788888888888
Q ss_pred cCCCcCchhhhc--------CCCccEEeccCCcCCCCCchhhc--CCCCCCEEEccCCcCccccchhhhhhhhcccCCcc
Q 005619 367 YFFGRIPHQINE--------HSNLRALLLRGNYLQGPIPHQLC--QLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRY 436 (688)
Q Consensus 367 ~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~ 436 (688)
++. .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+.+
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~---------- 774 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN---------- 774 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG----------
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc----------
Confidence 886 44443332 238888999998888 6777776 88888888888888886 5655433
Q ss_pred cccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccC------Cccccc
Q 005619 437 LSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSS------NKLTGD 510 (688)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~------N~l~~~ 510 (688)
+++|+.|+|++ |++.+.
T Consensus 775 ---------------------------------------------------------L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 775 ---------------------------------------------------------SSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp ---------------------------------------------------------CTTCCEEECCCCBCTTCCBCCCC
T ss_pred ---------------------------------------------------------CCCCCEEECCCCCCccccccccc
Confidence 46677888876 445555
Q ss_pred CChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcC
Q 005619 511 IPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579 (688)
Q Consensus 511 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 579 (688)
+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+++|++
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 555555555555555555555 34554443 3555555555555544444444333444444444443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-45 Score=412.23 Aligned_cols=435 Identities=18% Similarity=0.251 Sum_probs=327.6
Q ss_pred cceeEEECCCCCC-CCcchhhhCCCCCCEEEC-CCCcCCCCCchHHhhCCCCCc-----E-----------EE-------
Q 005619 69 FQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDL-SHNKLAGNFPTWLLENNTKLE-----V-----------LY------- 123 (688)
Q Consensus 69 ~~L~~L~l~~n~l-~~lp~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~-----~-----------L~------- 123 (688)
.+++.|+|+++.+ +.+|+.++++++|++|+| ++|.+.|..|.........+. . .+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 5789999999999 788999999999999999 888776653321100000000 0 00
Q ss_pred -----ccCC-CCCCCCCCCCCCCcCEEEccC--CCCCCCCChhhhhcCCCCCEEEccCCCCCc-----------------
Q 005619 124 -----LTNN-SFSGFQLTSAQHGLISLDISS--NNFTGKLPQNMGIVLPKLDCMNISKNSFEG----------------- 178 (688)
Q Consensus 124 -----L~~n-~l~~~~~~~~~~~L~~L~ls~--n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 178 (688)
+..+ ..... .......++.+.+.. |++++ +|..+. .+++|++|++++|.+++
T Consensus 403 l~~~~l~~~~~~~~i-~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNPEMKPI-KKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCTTSCCC-CCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCcccccc-ccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0000 00000 001222344444443 77775 888776 79999999999999987
Q ss_pred ccchhhh--cCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc-CCC-cCcccccCC-------CCCCEEeccCC
Q 005619 179 NIPSSIG--KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN-FDG-QIFPNYVNL-------TRLLFLYLDNN 247 (688)
Q Consensus 179 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l-------~~L~~L~L~~n 247 (688)
.+|+.++ ++++|++|++++|.+.+.+|.. +..+++|+.|++++|. +++ .+|..+..+ ++|+.|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3788877 8999999999999988888854 5788999999999997 887 667655544 49999999999
Q ss_pred cCCCcccc--cccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCC-CcEEEccCCcCccc
Q 005619 248 HFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI-LQILDISENNLSGS 324 (688)
Q Consensus 248 ~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~ 324 (688)
.+. .+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.++..
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC
Confidence 998 7777 8888999999999999988 777 7888999999999999988 77888888888 99999999998844
Q ss_pred ccccc-cc--CccceEeeecCccccCCchhc---c--CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC
Q 005619 325 MISTL-NL--SSVEHLYLQSNALGGSIPNTI---F--RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI 396 (688)
Q Consensus 325 ~~~~~-~~--~~L~~L~L~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 396 (688)
+..+ .. ++|+.|++++|.+.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+
T Consensus 635 -p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 -PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp -CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred -chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 4444 33 459999999999987665322 2 3458999999999997544444457889999999999998 55
Q ss_pred chhhcC--------CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCC
Q 005619 397 PHQLCQ--------LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGID 468 (688)
Q Consensus 397 ~~~~~~--------l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (688)
|..+.. |++|+.|+|++|+++ .+|..+..
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------ 749 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------ 749 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence 554333 238999999999988 66655420
Q ss_pred CCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCC------CcCccCCCccccCC
Q 005619 469 GRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSH------NFLSGSIPESFSNL 542 (688)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l 542 (688)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|+++
T Consensus 750 -----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 750 -----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp -----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred -----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 115788999999999997 788899999999999976 78888999999999
Q ss_pred CCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCC
Q 005619 543 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583 (688)
Q Consensus 543 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 583 (688)
++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 9999999999999 68888765 68999999999886543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=390.77 Aligned_cols=491 Identities=18% Similarity=0.154 Sum_probs=359.4
Q ss_pred ccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCC
Q 005619 41 ANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119 (688)
Q Consensus 41 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 119 (688)
..+...++++++++.+.. +|.. +. ++|++|++++|.+..++ ..+.++++|++|++++|++++..|.. +.++++|
T Consensus 28 ~~~~~~~~l~ls~~~L~~-ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 102 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTH-VPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDL 102 (562)
T ss_dssp -----CCEEECTTSCCCS-CCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTC
T ss_pred cccCCCcEEEcCCCCCcc-CCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCC
Confidence 345556889999887653 4443 22 68899999999997775 57888999999999999988554544 4688999
Q ss_pred cEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCC-CCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCC--CEEEcc
Q 005619 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG-KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLDVS 196 (688)
Q Consensus 120 ~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~ 196 (688)
++|++++|.++.++.. .+++|++|++++|++++ .+|..+. .+++|++|++++|.+++. .+..+++| ++|+++
T Consensus 103 ~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp CEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred CEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 9999999998876555 78889999999999884 2345554 788999999999888753 34555555 899999
Q ss_pred CCcC--ccccCchhhcCCC-CCCEEEcccCcCCCcCcc-cccCCCCCCEEeccCCcCC----CcccccccCCCCCCEEEc
Q 005619 197 SNKF--AGELSQSPVTNCF-SLEWLQLSNNNFDGQIFP-NYVNLTRLLFLYLDNNHFS----GKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 197 ~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~L 268 (688)
+|.+ .+..+.. +..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|... ......+..++.|+.+++
T Consensus 178 ~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 178 LVSYHIKGGETES-LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp ESSCCCCSSSCCE-EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred cccccccccCccc-ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 9888 6554443 23332 112557777777654433 4567788999999887521 012234677888888988
Q ss_pred cCCcCCCCCchh---hhCCcCCcEEEccccccCCCCcccc-----cCCCCCcEEEccCCcCcccccccc----ccCccce
Q 005619 269 SNNHLSGHIPSW---MGNFSNLYILSMSKNLLEGNIPVQF-----NNLAILQILDISENNLSGSMISTL----NLSSVEH 336 (688)
Q Consensus 269 s~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~L~~ 336 (688)
+++.+.+..... ....++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ ..+...+ ...+|++
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceE
Confidence 887766322111 1224589999999999998888877 6777777777777776 2221111 2367999
Q ss_pred EeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC--chhhcCCCCCCEEEccCC
Q 005619 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI--PHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 337 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n 414 (688)
|++++|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++.. |..+..+++|+.|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 999999986322 1257789999999999999988999999999999999999999643 567899999999999999
Q ss_pred cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccc
Q 005619 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494 (688)
Q Consensus 415 ~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (688)
++++.+|.... ..+
T Consensus 414 ~l~~~~~~~~~------------------------------------------------------------------~~l 427 (562)
T 3a79_B 414 SLNSHAYDRTC------------------------------------------------------------------AWA 427 (562)
T ss_dssp CCBSCCSSCCC------------------------------------------------------------------CCC
T ss_pred cCCCccChhhh------------------------------------------------------------------cCc
Confidence 99875664311 115
Q ss_pred ccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEec
Q 005619 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDV 574 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 574 (688)
+.|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++..+..+..+++|++|++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 7899999999999988776554 79999999999999 67877779999999999999999544444999999999999
Q ss_pred CCCcCccCCCCCcccCCcCccc--cCCCCCCCCCCCCCCCCC
Q 005619 575 SYNDLSGPIPDKEQFSTFDESS--YRGNLHLCGPPINKSCTN 614 (688)
Q Consensus 575 s~N~l~~~~p~~~~~~~~~~~~--~~~n~~l~~~p~~~~C~~ 614 (688)
++|++.|.||....+..|.... ...+..-|+.|....|..
T Consensus 505 ~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 505 HDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp CSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred cCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 9999999998543323221110 111222347777788875
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-42 Score=373.34 Aligned_cols=379 Identities=19% Similarity=0.233 Sum_probs=299.7
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34566666665 5665 2 36777777777777776677777788888888888877666766667777888888888
Q ss_pred cCcCCCcCcccccCCCCCCEEeccCCcCCCccccc--ccCCCCCCEEEccCCcCCCCCchh-hhCCcCCcEEEccccccC
Q 005619 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDG--LLRSSELMVLDISNNHLSGHIPSW-MGNFSNLYILSMSKNLLE 298 (688)
Q Consensus 222 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 298 (688)
+|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88877777777788888888888888877644443 777788888888888887776665 677888888888888887
Q ss_pred CCCcccccCC--CCCcEEEccCCcCccccccc---------cccCccceEeeecCccccCCchhccCC---CCccEEeCc
Q 005619 299 GNIPVQFNNL--AILQILDISENNLSGSMIST---------LNLSSVEHLYLQSNALGGSIPNTIFRG---SALETLDLR 364 (688)
Q Consensus 299 ~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~ 364 (688)
+..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|.+++..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777777665 67888888888877655432 245678888888888887777666543 778888888
Q ss_pred CCcCCCc----------Cchhhhc--CCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhccc
Q 005619 365 DNYFFGR----------IPHQINE--HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432 (688)
Q Consensus 365 ~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~ 432 (688)
+|...+. .+..+.. .++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 321 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------ 321 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence 8755432 1222222 368999999999999999999999999999999999998766665533
Q ss_pred CCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC
Q 005619 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512 (688)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 512 (688)
++.|+.|+|++|.+++..|
T Consensus 322 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 322 -------------------------------------------------------------LTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred -------------------------------------------------------------cccCCEEECCCCccCCcCh
Confidence 5689999999999999999
Q ss_pred hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCc
Q 005619 513 SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 592 (688)
..|+.+++|+.|+|++|++++..|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999976555444
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.6e-41 Score=378.83 Aligned_cols=478 Identities=20% Similarity=0.181 Sum_probs=380.9
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
||+|+|+++.+.+|.++++|++|||++|.+++ ++...|.++++|++|+|++|++. .++...|.++++|++|++++|+
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCc
Confidence 68999999999999999999999999999985 55568999999999999999864 5666679999999999999999
Q ss_pred CCCcch-hhhCCCCCCEEECCCCcCCCC-CchHHhhCCCCCcEEEccCCCCCCCCCCC------CCCCcCEEEccCCCCC
Q 005619 81 LGVIPN-FLLHQFNLKYLDLSHNKLAGN-FPTWLLENNTKLEVLYLTNNSFSGFQLTS------AQHGLISLDISSNNFT 152 (688)
Q Consensus 81 l~~lp~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~L~~L~ls~n~~~ 152 (688)
++.+|. .+.++++|++|++++|.+++. +|. .+..+++|++|++++|++++..... .......++++.|.+.
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 988865 589999999999999999753 344 4568999999999999998754322 1233557888888887
Q ss_pred CCCChhhhhcCCCCCEEEccCCCCCc-ccchhhhcCCCCCEEEccCCcCcc-----------------------------
Q 005619 153 GKLPQNMGIVLPKLDCMNISKNSFEG-NIPSSIGKMQGLRLLDVSSNKFAG----------------------------- 202 (688)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~----------------------------- 202 (688)
.++...+ ....++.+++.+|.... ..+..+..+..++...+..+....
T Consensus 215 -~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 215 -FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp -EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred -ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 5555554 34556777777765442 223345555555554443211100
Q ss_pred ---ccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCch
Q 005619 203 ---ELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279 (688)
Q Consensus 203 ---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 279 (688)
......+..+.+++.+.+.++.+... ..+.....++.|++.+|.+....+. .+..|+.++++.|......
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~-- 365 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF-- 365 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--
T ss_pred ccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--
Confidence 00011234456788888888877643 3456678999999999988755443 4578999999999877443
Q ss_pred hhhCCcCCcEEEccccccCC--CCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCc-hhccCCC
Q 005619 280 WMGNFSNLYILSMSKNLLEG--NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIP-NTIFRGS 356 (688)
Q Consensus 280 ~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~ 356 (688)
....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+...........+++|+.+++..+......+ ..+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 34578999999999998853 45666778899999999999988776666689999999999887765544 4567789
Q ss_pred CccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC-CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCc
Q 005619 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ-GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSR 435 (688)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~ 435 (688)
+++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+.+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~--------- 516 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------- 516 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---------
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC---------
Confidence 9999999999999888999999999999999999854 457888999999999999999999877776643
Q ss_pred ccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhh
Q 005619 436 YLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEI 515 (688)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~ 515 (688)
+++|+.|+|++|++++..|..|
T Consensus 517 ----------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 517 ----------------------------------------------------------LSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp ----------------------------------------------------------CTTCCEEECTTSCCCBCCCGGG
T ss_pred ----------------------------------------------------------CCCCCEEECCCCcCCCCChhHH
Confidence 5789999999999999999999
Q ss_pred hccCCCCeeeCCCCcCccCCCccccCC-CCCCeEeCCCCccccc
Q 005619 516 CDLQNIHGLNLSHNFLSGSIPESFSNL-KMIESLDLSHNKLNGQ 558 (688)
Q Consensus 516 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ 558 (688)
..+++|++|+|++|+|++.+|..+..+ ++|+.|+|++|.+++.
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999998 6899999999999853
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.4e-42 Score=379.98 Aligned_cols=457 Identities=19% Similarity=0.236 Sum_probs=359.4
Q ss_pred CCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhhhCCCCC
Q 005619 16 NLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFLLHQFNL 94 (688)
Q Consensus 16 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L 94 (688)
.+...+++|+++|.++. +|. .+ .++|++|++++|.+. .++...+.++++|++|++++|+++.+ |..+.++++|
T Consensus 29 ~~~~~~~l~ls~~~L~~--ip~-~~--~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH--VPK-DL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCCS--CCT-TS--CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred ccCCCcEEEcCCCCCcc--CCC-CC--CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 34556899999999885 662 23 278999999998865 44445688999999999999999777 6778899999
Q ss_pred CEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC---CCCCCcCEEEccCCCCCCCCChhhhhcCCCC--CEE
Q 005619 95 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT---SAQHGLISLDISSNNFTGKLPQNMGIVLPKL--DCM 169 (688)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L--~~L 169 (688)
++|++++|+++ .+|.. .+++|++|++++|.+++.+.+ ..+++|++|++++|.+++.. + ..+++| ++|
T Consensus 103 ~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~-~~l~~L~L~~L 174 (562)
T 3a79_B 103 EYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---L-LPVAHLHLSCI 174 (562)
T ss_dssp CEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---T-GGGTTSCEEEE
T ss_pred CEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---h-hhhhhceeeEE
Confidence 99999999998 67764 789999999999999876543 37789999999999987422 2 245566 999
Q ss_pred EccCCCC--CcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC----CcCcccccCCCCCCEE
Q 005619 170 NISKNSF--EGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD----GQIFPNYVNLTRLLFL 242 (688)
Q Consensus 170 ~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L 242 (688)
++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|... ......+..+++|+.+
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 9999998 777888777654 12256888898888788777788899999999998521 1123456788999999
Q ss_pred eccCCcCCCccccc---ccCCCCCCEEEccCCcCCCCCchhh-----hCCcCCcEEEccccccCCCCc-ccccC---CCC
Q 005619 243 YLDNNHFSGKIKDG---LLRSSELMVLDISNNHLSGHIPSWM-----GNFSNLYILSMSKNLLEGNIP-VQFNN---LAI 310 (688)
Q Consensus 243 ~L~~n~l~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~l~~---l~~ 310 (688)
++.++.+.+..... ....++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence 99888776432111 1234589999999999998888877 6677777777777766 233 22222 267
Q ss_pred CcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCc--CchhhhcCCCccEEecc
Q 005619 311 LQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR--IPHQINEHSNLRALLLR 388 (688)
Q Consensus 311 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~ 388 (688)
|++|++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++++|++++. .|..+..+++|+.|+++
T Consensus 333 L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 333 IKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred ceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 9999999999865432 13788999999999999988999999999999999999999763 35678999999999999
Q ss_pred CCcCCCCCc-hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 389 GNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 389 ~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
+|++++.+| ..+..+++|+.|++++|++++.+|..+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------------------------------------- 448 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------------------------------------- 448 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC-------------------------------------------
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh-------------------------------------------
Confidence 999998455 458889999999999999986555422
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCcc-ccCCCCCC
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES-FSNLKMIE 546 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~ 546 (688)
.+.|+.|||++|+++ .+|..+..+++|+.|+|++|++++ +|.. ++.+++|+
T Consensus 449 --------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 500 (562)
T 3a79_B 449 --------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500 (562)
T ss_dssp --------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCC
T ss_pred --------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCC
Confidence 146899999999999 677777799999999999999995 5554 99999999
Q ss_pred eEeCCCCcccccCC
Q 005619 547 SLDLSHNKLNGQIP 560 (688)
Q Consensus 547 ~L~Ls~N~l~~~~p 560 (688)
.|++++|++.+..|
T Consensus 501 ~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 501 YIWLHDNPWDCTCP 514 (562)
T ss_dssp CEECCSCCBCCCHH
T ss_pred EEEecCCCcCCCcc
Confidence 99999999997654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-39 Score=347.78 Aligned_cols=383 Identities=21% Similarity=0.207 Sum_probs=270.5
Q ss_pred CCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC--CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEc
Q 005619 94 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL--TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171 (688)
Q Consensus 94 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l 171 (688)
-+.++.+++.++ .+|. + .++|++|++++|.+++... ...+++|++|++++|.+.+.++...+..+++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346777777776 6665 2 3677777777777776422 2366777777777777765665555556777777777
Q ss_pred cCCCCCcccchhhhcCCCCCEEEccCCcCccccC-chhhcCCCCCCEEEcccCcCCCcCccc-ccCCCCCCEEeccCCcC
Q 005619 172 SKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELS-QSPVTNCFSLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHF 249 (688)
Q Consensus 172 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l 249 (688)
++|.+++..|..|+++++|++|++++|.+.+.++ ...+..+++|++|++++|.+++..+.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 7777776667777777777777777777664332 223456667777777777776655544 56667777777777766
Q ss_pred CCcccccccCC--CCCCEEEccCCcCCCCCchhh--------hCCcCCcEEEccccccCCCCcccccCC---CCCcEEEc
Q 005619 250 SGKIKDGLLRS--SELMVLDISNNHLSGHIPSWM--------GNFSNLYILSMSKNLLEGNIPVQFNNL---AILQILDI 316 (688)
Q Consensus 250 ~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L 316 (688)
.+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 66655555443 456666666666664433322 234556666666666655544444332 55566666
Q ss_pred cCCcCccccccccccCccceEeeecCccccCCchhcc--CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC
Q 005619 317 SENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF--RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394 (688)
Q Consensus 317 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (688)
++|...+...... .+.+..+..+. ..++|++|++++|++.+..|..++.+++|++|++++|++++
T Consensus 247 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 247 SNSYNMGSSFGHT-------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TTCTTTSCCTTCC-------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccccchh-------------hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 6555443221111 11111111222 23689999999999999999999999999999999999998
Q ss_pred CCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCc
Q 005619 395 PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGT 474 (688)
Q Consensus 395 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (688)
..|..+..+++|++|++++|.+++..|..+.+
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 345 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------------------------------------------------ 345 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTT------------------------------------------------
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcC------------------------------------------------
Confidence 88999999999999999999998666665533
Q ss_pred ceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCc
Q 005619 475 QVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 554 (688)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 554 (688)
++.|+.|||++|++++..|..|..+++|+.|+|++|++++..+..++.+++|+.|++++|+
T Consensus 346 -------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 346 -------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 5789999999999999999999999999999999999998777888999999999999999
Q ss_pred ccccCCc
Q 005619 555 LNGQIPP 561 (688)
Q Consensus 555 l~~~~p~ 561 (688)
+++..|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 9988763
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.3e-40 Score=349.37 Aligned_cols=306 Identities=23% Similarity=0.238 Sum_probs=140.4
Q ss_pred cceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCC-------------CcEEEccCCCCCCCCCC
Q 005619 69 FQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK-------------LEVLYLTNNSFSGFQLT 135 (688)
Q Consensus 69 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~~ 135 (688)
++|++|++++|.++++|..++++++|++|++++|.++|.+|..+ ..+++ +++|++++|.+++++.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~- 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence 45555555555555566556666666666666665555555443 23333 3555555555554322
Q ss_pred CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCC
Q 005619 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL 215 (688)
Q Consensus 136 ~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 215 (688)
..++|++|++++|.+++ +|. ..++|++|++++|.+++. +.. .++|++|++++|.++ .+|. +..+++|
T Consensus 89 -~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L 155 (454)
T 1jl5_A 89 -LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFL 155 (454)
T ss_dssp -CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCCC--CTTCTTC
T ss_pred -CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCcc--cCCCCCC
Confidence 23455555555555552 442 134555555555555531 111 145555555555555 2442 4455555
Q ss_pred CEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccc
Q 005619 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295 (688)
Q Consensus 216 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 295 (688)
++|++++|.+++ +|.. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 555555555553 2221 1355555555555553 23 35555555555555555553 2221 135555555555
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchh
Q 005619 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ 375 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 375 (688)
.+. .+| .+..+++|++|++++|++++.+. .+++|++|++++|.+++ +|.. .++|++|++++|++++. |.
T Consensus 226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~- 294 (454)
T 1jl5_A 226 ILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE- 294 (454)
T ss_dssp CCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-
T ss_pred cCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-
Confidence 555 333 25555556666665555554322 12455555665555553 3322 24566666666655441 11
Q ss_pred hhcCCCccEEeccCCcCCCCCchhhcCC-CCCCEEEccCCcCc
Q 005619 376 INEHSNLRALLLRGNYLQGPIPHQLCQL-RKLSIMDLSHNRLN 417 (688)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~ 417 (688)
..++|+.|++++|++++. + .+ ++|+.|++++|+++
T Consensus 295 --~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp --CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCS
T ss_pred --cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCccc
Confidence 014566666666665531 1 22 35666666666655
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.1e-40 Score=348.14 Aligned_cols=425 Identities=23% Similarity=0.293 Sum_probs=223.3
Q ss_pred chhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhC
Q 005619 11 PSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLH 90 (688)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~ 90 (688)
|+.+ +.++|++|++++|.+ + .+| ..++++++|++|++++|.+.+.++. .++.+.+|+.+++.+|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~-~iP-~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~---------- 69 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-T-EMP-VEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCL---------- 69 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHH----------
T ss_pred cccc-ccccchhhhcccCch-h-hCC-hhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhh----------
Confidence 4434 458999999999998 4 677 5789999999999998887666554 47777776443333321
Q ss_pred CCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEE
Q 005619 91 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMN 170 (688)
Q Consensus 91 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~ 170 (688)
..++++|++++|.++ .+|. ..++|++|++++|.++++ +...++|++|++++|+++ .++. ..++|++|+
T Consensus 70 ~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~l--p~~~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~ 137 (454)
T 1jl5_A 70 DRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 137 (454)
T ss_dssp HHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC--CCCCTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred ccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCcc--ccccCCCcEEECCCCccC-cccC----CCCCCCEEE
Confidence 023455555555554 2332 124555555555555542 223355555555555555 2332 124666667
Q ss_pred ccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCC
Q 005619 171 ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS 250 (688)
Q Consensus 171 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 250 (688)
+++|.+++ +| .++++++|++|++++|.++ .+|.. ..+|++|++++|.+++ .+ .+..+++|++|++++|.++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 76666664 44 4666777777777777666 34432 2467777777777765 23 5677777777777777776
Q ss_pred CcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccc
Q 005619 251 GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN 330 (688)
Q Consensus 251 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 330 (688)
+ +|.. .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|. ..++|++|++++|++++.+. .
T Consensus 209 ~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~---~ 275 (454)
T 1jl5_A 209 K-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE---L 275 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC---C
T ss_pred c-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc---c
Confidence 4 3332 247778888887777 4553 7777788888888887774 333 23678888888888776433 2
Q ss_pred cCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcC-CCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 331 LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
+++|++|++++|.+++ ++.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|+.|
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 4678888888888775 2211 25788889988888652 2 23 478999999999886 5543 5789999
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|+++ .+|. .
T Consensus 343 ~L~~N~l~-~lp~-~----------------------------------------------------------------- 355 (454)
T 1jl5_A 343 IASFNHLA-EVPE-L----------------------------------------------------------------- 355 (454)
T ss_dssp ECCSSCCS-CCCC-C-----------------------------------------------------------------
T ss_pred ECCCCccc-cccc-h-----------------------------------------------------------------
Confidence 99999887 3443 0
Q ss_pred cccccccccEEEccCCcccc--cCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc--cCCcCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTG--DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIPPQLTE 565 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~ 565 (688)
+++|+.|++++|++++ .+|..++.+ +.|.+.+.+|.. +++|+.||+++|++++ .+|.
T Consensus 356 ----l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~---- 416 (454)
T 1jl5_A 356 ----PQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE---- 416 (454)
T ss_dssp ----CTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------------------------------
T ss_pred ----hhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh----
Confidence 4578889999999988 677665443 457777777764 5789999999999997 5554
Q ss_pred CCCCCEEecCCCcCccCCCC
Q 005619 566 LHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 566 l~~L~~L~ls~N~l~~~~p~ 585 (688)
+++.|.+.+|.+.+.+|.
T Consensus 417 --sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 417 --SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp --------------------
T ss_pred --hHhheeCcCcccCCcccc
Confidence 466778899999887764
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=341.89 Aligned_cols=346 Identities=18% Similarity=0.166 Sum_probs=246.1
Q ss_pred CEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccC
Q 005619 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISN 270 (688)
Q Consensus 191 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 270 (688)
+.++.+++.++ .+|... .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 444432 23566666666666655555666666666666666666665566666666666777766
Q ss_pred CcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCc
Q 005619 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIP 349 (688)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~ 349 (688)
|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66665555556666777777777777666666666777777777777777766655555 66777777777777775555
Q ss_pred hhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhh
Q 005619 350 NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429 (688)
Q Consensus 350 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 429 (688)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+.+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence 56777788888888888877776777778888888888888777666666666668888888888887332233322
Q ss_pred cccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc
Q 005619 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG 509 (688)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 509 (688)
+++|+.|+|++|.+++
T Consensus 247 ----------------------------------------------------------------l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 247 ----------------------------------------------------------------LVYLRFLNLSYNPIST 262 (477)
T ss_dssp ----------------------------------------------------------------CTTCCEEECCSSCCCE
T ss_pred ----------------------------------------------------------------ccccCeeECCCCcCCc
Confidence 5678888888888888
Q ss_pred cCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCccc
Q 005619 510 DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589 (688)
Q Consensus 510 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 589 (688)
..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+....+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 88888888999999999999999888889999999999999999999877778888999999999999999887643322
Q ss_pred CCcCccccCCCCCCCCCC
Q 005619 590 STFDESSYRGNLHLCGPP 607 (688)
Q Consensus 590 ~~~~~~~~~~n~~l~~~p 607 (688)
.......+.++...|..|
T Consensus 343 ~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 343 RRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTTTSSCCTTCCCBEEES
T ss_pred hhhhccccCccCceeCCc
Confidence 222334455566666544
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-37 Score=329.95 Aligned_cols=266 Identities=21% Similarity=0.168 Sum_probs=145.7
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
++++++|++|++++|.++.+| .+..+++|++|++++|++++ +| +..+++|++|++++|.+++.+ ...+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence 344455555556666555554 35556666666666666653 33 345566666666666655543 3345555555
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 224 (688)
++++|++++ ++ + ..+++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+++|+.|++++|.
T Consensus 112 ~L~~N~l~~-l~--~-~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKLTK-LD--V-SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCCSC-CC--C-TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred ECCCCcCCe-ec--C-CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 555555552 33 2 2466666666666666643 2 5566666666666664433442 3455666666666666
Q ss_pred CCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCccc
Q 005619 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ 304 (688)
Q Consensus 225 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 304 (688)
+++. + +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|.+++..
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---
Confidence 6542 2 55556666666666666543 25555666666666666664 33 555566666666666665432
Q ss_pred ccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc
Q 005619 305 FNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373 (688)
Q Consensus 305 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 373 (688)
+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|
T Consensus 250 ~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 234455555555543 23445555555444444 2344555555555555444444
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-36 Score=322.87 Aligned_cols=343 Identities=24% Similarity=0.325 Sum_probs=169.8
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccC
Q 005619 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSS 197 (688)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 197 (688)
+++.|++.++.+..++....+++|++|++++|.++ .++. + ..+++|++|++++|.+++..+ ++++++|++|++++
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 34444444443333322223334444444444443 2222 2 245555555555555554322 55555555565555
Q ss_pred CcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCC
Q 005619 198 NKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277 (688)
Q Consensus 198 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 277 (688)
|.+.+ ++. +..+++|++|++++|.+.+. +.+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+.+.
T Consensus 122 n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 122 NQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp SCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC-
Confidence 55542 222 44555555555555555432 234555555555554 2222221 244555555555555555432
Q ss_pred chhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCC
Q 005619 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 357 (688)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~ 244 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-------------------------GTLASLTN 244 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-------------------------hhhhcCCC
Confidence 224455555555555555543332 34445555555555544432 12334445
Q ss_pred ccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +.
T Consensus 245 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------------ 306 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------------ 306 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG------------
T ss_pred CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc------------
Confidence 5555555555543322 4455555555555555553322 4555555555555555543221 11
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
.+++|+.|++++|++++..| +..
T Consensus 307 -------------------------------------------------------~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 307 -------------------------------------------------------NLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp -------------------------------------------------------GCTTCSEEECCSSCCSCCGG--GGG
T ss_pred -------------------------------------------------------CCCCCCEEECcCCcCCCchh--hcc
Confidence 13455556666665554443 455
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
+++|+.|++++|++++. ..++++++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666666666666543 345566666666666666665554 5566666666666666655
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.3e-36 Score=322.31 Aligned_cols=342 Identities=24% Similarity=0.318 Sum_probs=251.1
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++++.|+++++.+.. +| .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3455555665555553 23 2555666666666666655 2222 4556666666666666654333 6666666666
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 666666664322 66667777777777776642 2 36677777777775 3444322 3777788888888888777
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+.. ....+++|++|++++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 643 23377888888888888875544 66789999999999999664 468899999999999999997655 889
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|+.|++++|.+++..| +.
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~--------------------------------------------------------- 284 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LA--------------------------------------------------------- 284 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GT---------------------------------------------------------
T ss_pred CCCCCEEECCCCccCcccc--cc---------------------------------------------------------
Confidence 9999999999999985433 21
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
.++.|+.|++++|++++..| +..+++|+.|+|++|++++..| ++.+++|+.|++++|++++. ..
T Consensus 285 ----------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 285 ----------GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ----------TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ----------CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 15789999999999997654 8899999999999999998766 78999999999999999976 57
Q ss_pred CCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCC
Q 005619 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNL 601 (688)
Q Consensus 563 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 601 (688)
+..+++|++|++++|++++..| ...+..+......+|+
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 8999999999999999999887 4455556666666664
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-36 Score=322.30 Aligned_cols=322 Identities=20% Similarity=0.203 Sum_probs=195.0
Q ss_pred cccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch
Q 005619 7 SGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN 86 (688)
Q Consensus 7 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~ 86 (688)
.+..+..++++++|++|++++|.+++ +| .+.++++|++|++++|.+.+. .+..+++|++|++++|.++.+|
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~--~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT--GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT--TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC-
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch--hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceee-
Confidence 34445567777888888888887775 34 477777777777777765442 1566667777777777776554
Q ss_pred hhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCC
Q 005619 87 FLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKL 166 (688)
Q Consensus 87 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L 166 (688)
+..+++|++|++++|++++ ++ +..+++|++|++++|++++.+ ...+++|++|++++|+..+.+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~----------- 164 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL----------- 164 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-----------
T ss_pred -cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-----------
Confidence 5666677777777776663 43 346666666666666666542 234444555555544333233
Q ss_pred CEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccC
Q 005619 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDN 246 (688)
Q Consensus 167 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 246 (688)
.++.+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++
T Consensus 165 ----------------~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 165 ----------------DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS 221 (457)
T ss_dssp ----------------CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS
T ss_pred ----------------ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC
Confidence 24445555555555555542 33 34455555666665555543 255566666666666
Q ss_pred CcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccc
Q 005619 247 NHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI 326 (688)
Q Consensus 247 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 326 (688)
|++++ +| +..+++|+.|++++|.+++.. ++.+++|+.|+++.| +|+.|++++|.+.+..+
T Consensus 222 N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 222 NKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp SCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE
T ss_pred Ccccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc
Confidence 66665 33 556666677777777666543 344566666666554 34556666666655444
Q ss_pred cccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCC
Q 005619 327 STLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406 (688)
Q Consensus 327 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 406 (688)
...+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++. + ++.+++|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L 341 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL 341 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC
Confidence 22567788888888776666653 3345665555544 5677777777777763 2 6667777
Q ss_pred CEEEccCCcCc
Q 005619 407 SIMDLSHNRLN 417 (688)
Q Consensus 407 ~~L~ls~n~l~ 417 (688)
+.|++++|+++
T Consensus 342 ~~L~l~~N~l~ 352 (457)
T 3bz5_A 342 KSLSCVNAHIQ 352 (457)
T ss_dssp SEEECCSSCCC
T ss_pred cEEECCCCCCC
Confidence 77777777665
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=321.23 Aligned_cols=320 Identities=18% Similarity=0.175 Sum_probs=154.3
Q ss_pred EEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEccc
Q 005619 143 SLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222 (688)
Q Consensus 143 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 222 (688)
.++.++++++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4444444444 444433 234555555555555544455555555555555555554 23223344455555555555
Q ss_pred CcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCc
Q 005619 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP 302 (688)
Q Consensus 223 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 302 (688)
|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 55544333344445555555555555544444444445555555555555444444444445555555555554444444
Q ss_pred ccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCc
Q 005619 303 VQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL 382 (688)
Q Consensus 303 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 382 (688)
..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|...+.++.......+|
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~-----------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY-----------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT-----------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh-----------------------hcccCcccceeeCCCCccccccCcccccCccc
Confidence 4444444444444444444433332 23333333333333333333333333333344
Q ss_pred cEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceec
Q 005619 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462 (688)
Q Consensus 383 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 462 (688)
+.|++++|++++..+..+..+++|+.|++++|++++..+..+.+
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------ 270 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------------------------------ 270 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT------------------------------------
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc------------------------------------
Confidence 44444444444333334444555555555555544322221111
Q ss_pred ccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCC
Q 005619 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNL 542 (688)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 542 (688)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+
T Consensus 271 -------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 271 -------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp -------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred -------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 3345555555555555555556666666666666666665555555666
Q ss_pred CCCCeEeCCCCcccc
Q 005619 543 KMIESLDLSHNKLNG 557 (688)
Q Consensus 543 ~~L~~L~Ls~N~l~~ 557 (688)
++|+.|+|++|.+.+
T Consensus 320 ~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 320 GNLETLILDSNPLAC 334 (477)
T ss_dssp GGCCEEECCSSCEEC
T ss_pred cccCEEEccCCCccC
Confidence 666666666666554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-35 Score=311.12 Aligned_cols=334 Identities=22% Similarity=0.214 Sum_probs=193.7
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++++.+++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 455555555555555433333455555555555555554 3333334445555555555555554444444455555555
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.++. ..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 123 ~L~~n~l~~------------------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSS------------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCc------------------------CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 555555443 33333344444444444444444444444444455555555555444
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+... ..+++|++|++++|.+++ +...++|+.|++++|.+... |. ...++|+.|++++|.+++. ..+..
T Consensus 179 ~~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 179 HVDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp BCCG--GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred cccc--ccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcC
Confidence 3321 134455555555555442 12234566666666666433 22 1235667777777766643 45666
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|++|++++|.+++..|..+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------------------- 270 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------- 270 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred CCCccEEECCCCcCCCcChhHccc--------------------------------------------------------
Confidence 677777777777776555544432
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
++.|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+++.. |
T Consensus 271 -----------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-- 334 (390)
T 3o6n_A 271 -----------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-- 334 (390)
T ss_dssp -----------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--
T ss_pred -----------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--
Confidence 4566777777777764 3445567888999999999888 5677788889999999999998855 3
Q ss_pred CCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCC
Q 005619 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGP 606 (688)
Q Consensus 563 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~ 606 (688)
+..+++|++|++++|++.|.+.. ..+..+....+.++...|..
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 67788999999999999986532 34455555556666555553
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-35 Score=326.00 Aligned_cols=333 Identities=22% Similarity=0.211 Sum_probs=201.1
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
+++.+++++|.+. .+|...+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3444444444443 344433444444444444444444433344444444444444444444444444444455555555
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCC
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSI 348 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 348 (688)
++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.+++.... .+++|+.|++++|.+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSE--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccc--
Confidence 55555433333344555555555555555544444455555555555555555443211 34555555555555542
Q ss_pred chhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhh
Q 005619 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428 (688)
Q Consensus 349 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 428 (688)
+...++|+.|++++|.+....+ .+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 276 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-- 276 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT--
T ss_pred ---ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC--
Confidence 2223456666666666643322 11 2467777777777764 355677777777777777777666655432
Q ss_pred hcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccc
Q 005619 429 FWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT 508 (688)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 508 (688)
+++|+.|+|++|.++
T Consensus 277 -----------------------------------------------------------------l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 277 -----------------------------------------------------------------MQRLERLYISNNRLV 291 (597)
T ss_dssp -----------------------------------------------------------------CSSCCEEECTTSCCC
T ss_pred -----------------------------------------------------------------ccCCCEEECCCCCCC
Confidence 456777777777777
Q ss_pred ccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcc
Q 005619 509 GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQ 588 (688)
Q Consensus 509 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 588 (688)
+ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++.. +..+++|++|++++|+++|.++. .+
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~ 365 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-AL 365 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HH
Confidence 5 3556677889999999999998 67778888999999999999998653 66788999999999999987643 45
Q ss_pred cCCcCccccCCCCCCCCCC
Q 005619 589 FSTFDESSYRGNLHLCGPP 607 (688)
Q Consensus 589 ~~~~~~~~~~~n~~l~~~p 607 (688)
+..+....+.++...|+.+
T Consensus 366 ~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 366 FRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTTCCTTTBCCCCCCCCTT
T ss_pred HHHHhhhccccccccCCcc
Confidence 6667777788888888864
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-35 Score=296.95 Aligned_cols=257 Identities=33% Similarity=0.546 Sum_probs=208.2
Q ss_pred CCcEEEccccccCC--CCcccccCCCCCcEEEccC-CcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEE
Q 005619 286 NLYILSMSKNLLEG--NIPVQFNNLAILQILDISE-NNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETL 361 (688)
Q Consensus 286 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 361 (688)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+..+..+ .+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444555555555555552 44444444433 55566666666666666777778888888888
Q ss_pred eCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCC-CCCEEEccCCcCccccchhhhhhhhcccCCcccccc
Q 005619 362 DLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLR-KLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGF 440 (688)
Q Consensus 362 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~ 440 (688)
++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------- 196 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------- 196 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence 8888888888888889999999999999999888898899887 9999999999999888876643
Q ss_pred eeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCC
Q 005619 441 VMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520 (688)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 520 (688)
+. |+.|++++|.+++..|..|..+++
T Consensus 197 -----------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 197 -----------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp -----------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred -----------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 23 888999999999999999999999
Q ss_pred CCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCC
Q 005619 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGN 600 (688)
Q Consensus 521 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n 600 (688)
|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence 99999999999977766 88999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCCCCCCCCC
Q 005619 601 LHLCGPPINKSC 612 (688)
Q Consensus 601 ~~l~~~p~~~~C 612 (688)
+.+||.|.. .|
T Consensus 302 ~~lc~~p~~-~C 312 (313)
T 1ogq_A 302 KCLCGSPLP-AC 312 (313)
T ss_dssp SEEESTTSS-CC
T ss_pred CCccCCCCC-CC
Confidence 999998875 46
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.7e-33 Score=288.59 Aligned_cols=304 Identities=20% Similarity=0.316 Sum_probs=182.6
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.++.. +.
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~---------- 105 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SA---------- 105 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GG----------
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hH----------
Confidence 4555555555555542 22 2445555555555555544 2222 34444555555555544431 23
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
+..+++|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.
T Consensus 106 --------------~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 106 --------------LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp --------------GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred --------------HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC
Confidence 4444555555555555443222 4455555555555553332222 2555555555555555555
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+..+ ...+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cchh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 4433 2255566666666666653 222 5566777777777777755433 6677777777777777775433 677
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|++|++++|.+++. + .+
T Consensus 242 l~~L~~L~l~~n~l~~~-~-~~---------------------------------------------------------- 261 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-N-AV---------------------------------------------------------- 261 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G-GG----------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCC-h-hH----------------------------------------------------------
Confidence 77888888888777631 1 11
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..++++++|+.|++++|++++..|
T Consensus 262 ---------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 262 ---------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp ---------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred ---------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 1156677888888887754 457788888888888888888888888888888888888888887665
Q ss_pred CCCCCCCCEEecCCCcCc
Q 005619 563 LTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 563 l~~l~~L~~L~ls~N~l~ 580 (688)
+..+++|++|++++|+++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 778888888888888765
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.2e-34 Score=297.83 Aligned_cols=335 Identities=20% Similarity=0.214 Sum_probs=255.1
Q ss_pred CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCC
Q 005619 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLE 216 (688)
Q Consensus 137 ~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 216 (688)
.+.+++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 5688999999999998 889888778999999999999999888889999999999999999998 56666678999999
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (688)
+|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999976666678899999999999998877777788888888888888887743 24456667777776665
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhh
Q 005619 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI 376 (688)
Q Consensus 297 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 376 (688)
+.+ +...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~------------------------~~~--~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV------------------------RGP--VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE------------------------ECC--CCSSCCEEECCSSCCCCC--GGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec------------------------ccc--ccccccEEECCCCCCccc--HHH
Confidence 542 12223455555555544332 221 135678888888887653 467
Q ss_pred hcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccccccc
Q 005619 377 NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYY 456 (688)
Q Consensus 377 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (688)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------- 291 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------------------------------- 291 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS--------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc--------------------------------
Confidence 888888888888888887778888888899999999888863 22211
Q ss_pred ccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCC
Q 005619 457 NSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP 536 (688)
Q Consensus 457 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 536 (688)
..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++. |
T Consensus 292 -----------------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~ 334 (390)
T 3o6n_A 292 -----------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K 334 (390)
T ss_dssp -----------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred -----------------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C
Confidence 11577889999999988 5677788999999999999999854 3
Q ss_pred ccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCC
Q 005619 537 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583 (688)
Q Consensus 537 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 583 (688)
++.+++|+.|++++|++++.....+ +..+....+..+...|..
T Consensus 335 --~~~~~~L~~L~l~~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKI 377 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHHHHH--TTTCCTTTBCCCCSCCCT
T ss_pred --chhhccCCEEEcCCCCccchhHHHH--HHHHHhhcccccCceecc
Confidence 6788999999999999986432221 223333334555555544
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-32 Score=282.58 Aligned_cols=305 Identities=23% Similarity=0.317 Sum_probs=164.3
Q ss_pred CCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEc
Q 005619 67 PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDI 146 (688)
Q Consensus 67 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l 146 (688)
.+++|++|+++++.+..+|. +..+++|++|++++|+++ .++. +..+++|++|++++|.+++.+....+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 34555666666666655553 555666666666666665 3333 3456666666666665555433334444555555
Q ss_pred cCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 147 SSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 147 s~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
++|.++ .++. +..+++|++|++++|...... ..+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.
T Consensus 118 ~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 118 NEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp TTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECTTSCCC
T ss_pred cCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCC-chh--hccCCCCCEEEccCCccc
Confidence 554444 2322 224555555555555333222 224455555555555554442 111 334444444444444443
Q ss_pred CcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCccccc
Q 005619 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFN 306 (688)
Q Consensus 227 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 306 (688)
+ ..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +.
T Consensus 191 ~------------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 D------------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp C------------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred c------------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 2 211 3344444555555544443322 4445555555555555543222 45
Q ss_pred CCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEe
Q 005619 307 NLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 307 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 386 (688)
.+++|++|++++|.+++. +....+++|++|++++|.+++. +.+..+++|+.|++++|++.+..+..+..+++|+.|+
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred cCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 555555555555555543 2222555666666666666532 3466677788888888877777777777788888888
Q ss_pred ccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
+++|++++..| +..+++|+.|++++|+++
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888776555 677788888888888764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-32 Score=304.29 Aligned_cols=312 Identities=20% Similarity=0.212 Sum_probs=208.7
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++++.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 344455555555444433334444555555555555554 3333334455555555555555555444455555555556
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66555555444444555666666666666666555555666666666666666665432 344566677777776665
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+.. ..++|+.|++++|.+.. ++..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc----CCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 432 24567777777777763 33222 2578999999998876 367888999999999999999888999999
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|+.|++++|.+++ +|..+
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~---------------------------------------------------------- 297 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYG---------------------------------------------------------- 297 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSS----------------------------------------------------------
T ss_pred ccCCCEEECCCCCCCC-CCccc----------------------------------------------------------
Confidence 9999999999999874 23211
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | ++.+++|+.|++++|.+++..
T Consensus 298 ---------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 298 ---------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ---------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ---------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 11578999999999998 6788889999999999999999865 3 677889999999999998653
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.6e-35 Score=319.10 Aligned_cols=356 Identities=19% Similarity=0.201 Sum_probs=214.2
Q ss_pred CCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcc----cchhhhcCCCCCEEEccCCcCccccCchhhcCCC-
Q 005619 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF- 213 (688)
Q Consensus 139 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 213 (688)
++|++|++++|+++......++..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+...+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888877444444455788899999998888743 4566777888999999988887544444444555
Q ss_pred ---CCCEEEcccCcCCC----cCcccccCCCCCCEEeccCCcCCCcccccc-----cCCCCCCEEEccCCcCCCCC----
Q 005619 214 ---SLEWLQLSNNNFDG----QIFPNYVNLTRLLFLYLDNNHFSGKIKDGL-----LRSSELMVLDISNNHLSGHI---- 277 (688)
Q Consensus 214 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~---- 277 (688)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 346667778888888888887764433322 22456788888877776533
Q ss_pred chhhhCCcCCcEEEccccccCCCCccccc-----CCCCCcEEEccCCcCcccc----cccc-ccCccceEeeecCccccC
Q 005619 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFN-----NLAILQILDISENNLSGSM----ISTL-NLSSVEHLYLQSNALGGS 347 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~----~~~~-~~~~L~~L~L~~n~l~~~ 347 (688)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+ .+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44455567777777777776543333332 2446777777777666532 2222 456666666666665532
Q ss_pred C-----chhccCCCCccEEeCcCCcCCCc----CchhhhcCCCccEEeccCCcCCCCCchhhcC-----CCCCCEEEccC
Q 005619 348 I-----PNTIFRGSALETLDLRDNYFFGR----IPHQINEHSNLRALLLRGNYLQGPIPHQLCQ-----LRKLSIMDLSH 413 (688)
Q Consensus 348 ~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~ls~ 413 (688)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 11122356666666666666443 3445555666666666666665433333322 24666666666
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|.+++.....+...- ..
T Consensus 323 n~l~~~~~~~l~~~l---------------------------------------------------------------~~ 339 (461)
T 1z7x_W 323 CSFTAACCSHFSSVL---------------------------------------------------------------AQ 339 (461)
T ss_dssp SCCBGGGHHHHHHHH---------------------------------------------------------------HH
T ss_pred CCCchHHHHHHHHHH---------------------------------------------------------------hh
Confidence 666543222221100 01
Q ss_pred cccccEEEccCCcccccCChhhhc-----cCCCCeeeCCCCcCcc----CCCccccCCCCCCeEeCCCCcccc
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICD-----LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
++.|+.||+++|.+++..+..+.. .++|+.|+|++|.+++ .+|..+..+++|++|||++|++++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 345666666666666554444432 4566666666666664 455556666666666666666654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-33 Score=284.97 Aligned_cols=251 Identities=29% Similarity=0.428 Sum_probs=202.6
Q ss_pred CCCCEEEccCCcCCC--CCchhhhCCcCCcEEEccc-cccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccce
Q 005619 261 SELMVLDISNNHLSG--HIPSWMGNFSNLYILSMSK-NLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEH 336 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~ 336 (688)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..+..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777776 6677777777777777774 77777777777777777777777777776666555 7777888
Q ss_pred EeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCC-CccEEeccCCcCCCCCchhhcCCCCCCEEEccCCc
Q 005619 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHS-NLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNR 415 (688)
Q Consensus 337 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 415 (688)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888777888888888888888888888778888888887 888888888888888888888886 8888888888
Q ss_pred CccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccc
Q 005619 416 LNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILD 495 (688)
Q Consensus 416 l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 495 (688)
+++..|..+.. ++
T Consensus 209 l~~~~~~~~~~-------------------------------------------------------------------l~ 221 (313)
T 1ogq_A 209 LEGDASVLFGS-------------------------------------------------------------------DK 221 (313)
T ss_dssp EEECCGGGCCT-------------------------------------------------------------------TS
T ss_pred ccCcCCHHHhc-------------------------------------------------------------------CC
Confidence 88766654432 56
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecC
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 575 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 575 (688)
+|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..++.+++|+.|+|++|+++|.+|.. ..+++|+.++++
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 788888888888876665 788899999999999999899999999999999999999999988886 888999999999
Q ss_pred CCcCcc
Q 005619 576 YNDLSG 581 (688)
Q Consensus 576 ~N~l~~ 581 (688)
+|+.-|
T Consensus 300 ~N~~lc 305 (313)
T 1ogq_A 300 NNKCLC 305 (313)
T ss_dssp SSSEEE
T ss_pred CCCCcc
Confidence 998433
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=2.9e-34 Score=309.21 Aligned_cols=388 Identities=19% Similarity=0.089 Sum_probs=233.3
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEE
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYL 97 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 97 (688)
++|++|||++|.++... ....+..+++|++|++++|.+..... ..++..+..+++|++|
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L 61 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAEL 61 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEE
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEE
Confidence 56788888888876522 11236677777777777776432110 0123334444444444
Q ss_pred ECCCCcCCCCCchHHhhCCC----CCcEEEccCCCCCCCC------CCCCCCCcCEEEccCCCCCCCCChhhhh----cC
Q 005619 98 DLSHNKLAGNFPTWLLENNT----KLEVLYLTNNSFSGFQ------LTSAQHGLISLDISSNNFTGKLPQNMGI----VL 163 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~----~L~~L~L~~n~l~~~~------~~~~~~~L~~L~ls~n~~~~~~~~~~~~----~l 163 (688)
++++|.+++..+..++..++ +|++|++++|.+++.. ....+++|++|++++|.+++..+..+.. ..
T Consensus 62 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred eCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 44444443222222222333 3444444444444211 1123445555555555544322222221 24
Q ss_pred CCCCEEEccCCCCCccc----chhhhcCCCCCEEEccCCcCccccCchhh----cCCCCCCEEEcccCcCCCc----Ccc
Q 005619 164 PKLDCMNISKNSFEGNI----PSSIGKMQGLRLLDVSSNKFAGELSQSPV----TNCFSLEWLQLSNNNFDGQ----IFP 231 (688)
Q Consensus 164 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~i~~~----~~~ 231 (688)
++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+.... ...++|++|++++|.++.. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 45777777777666532 44555667777777777776532222211 1345777777777777653 345
Q ss_pred cccCCCCCCEEeccCCcCCCcc-----cccccCCCCCCEEEccCCcCCCC----CchhhhCCcCCcEEEccccccCCCCc
Q 005619 232 NYVNLTRLLFLYLDNNHFSGKI-----KDGLLRSSELMVLDISNNHLSGH----IPSWMGNFSNLYILSMSKNLLEGNIP 302 (688)
Q Consensus 232 ~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~ 302 (688)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 5566777888888877766432 22223567888888888877753 45566667888888888887764433
Q ss_pred ccccC-----CCCCcEEEccCCcCccccc----ccc-ccCccceEeeecCccccCCchhccC-----CCCccEEeCcCCc
Q 005619 303 VQFNN-----LAILQILDISENNLSGSMI----STL-NLSSVEHLYLQSNALGGSIPNTIFR-----GSALETLDLRDNY 367 (688)
Q Consensus 303 ~~l~~-----l~~L~~L~Ls~n~l~~~~~----~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~ 367 (688)
..+.. .++|++|++++|.+++... ..+ .+++|++|++++|.+++..+..+.. .++|++|++++|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 33332 2588888888888876532 222 5688888888888887655544432 5789999999999
Q ss_pred CCC----cCchhhhcCCCccEEeccCCcCCCCCchhhc-----CCCCCCEEEccCCcCccccchhhhh
Q 005619 368 FFG----RIPHQINEHSNLRALLLRGNYLQGPIPHQLC-----QLRKLSIMDLSHNRLNGSIPACITN 426 (688)
Q Consensus 368 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~p~~l~~ 426 (688)
+++ .+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.+....+..+..
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence 875 6778888899999999999998754322222 2457899999888887655554443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.8e-31 Score=271.36 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=170.7
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
+++.++++++.+. .+|... .++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777888877776 666543 356777777777777666667777777777777777777666777777777777777
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcc--cccccc-ccCccceEeeecCccc
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG--SMISTL-NLSSVEHLYLQSNALG 345 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~-~~~~L~~L~L~~n~l~ 345 (688)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+ .+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777776 3343333 677777777777776656667777777777777776643 233333 22 5555555555554
Q ss_pred cCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhh
Q 005619 346 GSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACIT 425 (688)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~ 425 (688)
+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus 186 ~-l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-IPKDLP--------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-CCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred c-cCcccc--------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 2 333222 3444555555555444444455555555555555555433332222
Q ss_pred hhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCC
Q 005619 426 NLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSN 505 (688)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 505 (688)
. +++|+.|++++|
T Consensus 239 ~-------------------------------------------------------------------l~~L~~L~L~~N 251 (332)
T 2ft3_A 239 F-------------------------------------------------------------------LPTLRELHLDNN 251 (332)
T ss_dssp G-------------------------------------------------------------------CTTCCEEECCSS
T ss_pred C-------------------------------------------------------------------CCCCCEEECCCC
Confidence 1 334555555555
Q ss_pred cccccCChhhhccCCCCeeeCCCCcCccCCCccccCC------CCCCeEeCCCCccc--ccCCcCCCCCCCCCEEecCCC
Q 005619 506 KLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNL------KMIESLDLSHNKLN--GQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 506 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N 577 (688)
+++ .+|..+..+++|+.|++++|++++..+..|... ..|+.|++++|.+. +..|..|..+++|+.+++++|
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 555 445556666666666666666665555555432 45666777777666 455566666777777777666
Q ss_pred c
Q 005619 578 D 578 (688)
Q Consensus 578 ~ 578 (688)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 3
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.1e-31 Score=269.81 Aligned_cols=259 Identities=26% Similarity=0.305 Sum_probs=217.9
Q ss_pred CCChhhhhcCC-----CCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCc
Q 005619 154 KLPQNMGIVLP-----KLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ 228 (688)
Q Consensus 154 ~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 228 (688)
.+|..+...+| +++.++++++.++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCcc
Confidence 45555443333 7999999999988 566655 368999999999998 66666678999999999999999988
Q ss_pred CcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCC--CCccccc
Q 005619 229 IFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG--NIPVQFN 306 (688)
Q Consensus 229 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~ 306 (688)
.+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+.
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 8899999999999999999998 4555443 799999999999998877889999999999999999963 6777888
Q ss_pred CCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEe
Q 005619 307 NLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 307 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 386 (688)
.+ +|++|++++|.+++.+... .++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|+.|+
T Consensus 171 ~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred CC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 88 9999999999999865543 37999999999999977778899999999999999999888888899999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchh
Q 005619 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPAC 423 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 423 (688)
+++|+++ .+|..+..+++|+.|++++|++++..+..
T Consensus 248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 9999998 67888899999999999999998544443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-30 Score=267.47 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=37.8
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccC------CCCCCeEeCCCCcccc--cCCcCCCCCC
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSN------LKMIESLDLSHNKLNG--QIPPQLTELH 567 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~ 567 (688)
+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..++
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 3444444444444 34444445555555555555555444444432 2445555555555542 3344555555
Q ss_pred CCCEEecCCC
Q 005619 568 SLSKFDVSYN 577 (688)
Q Consensus 568 ~L~~L~ls~N 577 (688)
.++.+++++|
T Consensus 320 ~l~~l~L~~N 329 (330)
T 1xku_A 320 VRAAVQLGNY 329 (330)
T ss_dssp CGGGEEC---
T ss_pred ceeEEEeccc
Confidence 5555555555
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.7e-30 Score=262.41 Aligned_cols=268 Identities=18% Similarity=0.202 Sum_probs=194.9
Q ss_pred CCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEE
Q 005619 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWL 218 (688)
Q Consensus 139 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 218 (688)
+.+++|++++|+++ .++...+..+++|++|++++|.+++..|..|+.+++|++|++++|.++ .+|...+ ++|++|
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence 34555555555555 344333346777777777777777766777777778888888877776 5665443 577888
Q ss_pred EcccCcCCCcCcccccCCCCCCEEeccCCcCCC--cccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc
Q 005619 219 QLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG--KIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296 (688)
Q Consensus 219 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (688)
++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence 888887777666667778888888888887753 556667777888888888887774 444332 678888888888
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchh
Q 005619 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ 375 (688)
Q Consensus 297 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 375 (688)
+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 887777788888888888888888887766555 7788888888888887 77777888888888888888887766665
Q ss_pred hhc------CCCccEEeccCCcCCC--CCchhhcCCCCCCEEEccCCc
Q 005619 376 INE------HSNLRALLLRGNYLQG--PIPHQLCQLRKLSIMDLSHNR 415 (688)
Q Consensus 376 ~~~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~ 415 (688)
|.. .+.++.+++++|++.. ..|..|..+.+++.+++++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 543 3678889999998863 556778888899999998874
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5e-30 Score=259.96 Aligned_cols=250 Identities=22% Similarity=0.235 Sum_probs=192.2
Q ss_pred EEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccc---ccccccCccceEeeec
Q 005619 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM---ISTLNLSSVEHLYLQS 341 (688)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~L~~L~L~~ 341 (688)
.++.+++.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.++... .....+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455555444 2333221 45566666666665444444566666666666666665432 2222566777777777
Q ss_pred CccccCCchhccCCCCccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcc-c
Q 005619 342 NALGGSIPNTIFRGSALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG-S 419 (688)
Q Consensus 342 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~ 419 (688)
|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7776 466667778888888888888876554 578888999999999999988888889999999999999999875 3
Q ss_pred cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccE
Q 005619 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499 (688)
Q Consensus 420 ~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 499 (688)
.|..+.. +++|+.
T Consensus 167 ~~~~~~~-------------------------------------------------------------------l~~L~~ 179 (306)
T 2z66_A 167 LPDIFTE-------------------------------------------------------------------LRNLTF 179 (306)
T ss_dssp ECSCCTT-------------------------------------------------------------------CTTCCE
T ss_pred chhHHhh-------------------------------------------------------------------CcCCCE
Confidence 4443321 578999
Q ss_pred EEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC-CCCEEecCCCc
Q 005619 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYND 578 (688)
Q Consensus 500 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 578 (688)
|++++|++++..|..|..+++|+.|+|++|++++..+..++.+++|+.|||++|++++..|..+..++ +|++|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999998899999999999999999999988888899999999999999999999999999995 99999999999
Q ss_pred CccCCCC
Q 005619 579 LSGPIPD 585 (688)
Q Consensus 579 l~~~~p~ 585 (688)
++|.|+.
T Consensus 260 ~~~~c~~ 266 (306)
T 2z66_A 260 FACTCEH 266 (306)
T ss_dssp EECSGGG
T ss_pred eecccCh
Confidence 9998764
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.5e-31 Score=295.81 Aligned_cols=392 Identities=14% Similarity=0.077 Sum_probs=186.7
Q ss_pred CCCCCcEEEccCCCCCCCCCCC---CCCC-cCEEEccCCC-CCCCCChhhhhcCCCCCEEEccCCCCCcc----cchhhh
Q 005619 115 NNTKLEVLYLTNNSFSGFQLTS---AQHG-LISLDISSNN-FTGKLPQNMGIVLPKLDCMNISKNSFEGN----IPSSIG 185 (688)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~---~~~~-L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~ 185 (688)
.+++|++|++++|.+++..... .+++ |++|++++|. ++......+...+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555444321110 1222 5555555544 11011111222455666666666555443 222334
Q ss_pred cCCCCCEEEccCCcCcccc---CchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCC---CcccccccC
Q 005619 186 KMQGLRLLDVSSNKFAGEL---SQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS---GKIKDGLLR 259 (688)
Q Consensus 186 ~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~ 259 (688)
.+++|++|++++|.+.+.- -...+..+++|+.|++++|.+.+ .+..+..+++|++|+++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5556666666655554110 01122345556666666555543 3344555556666665532211 122233445
Q ss_pred CCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCc-ccccCCCCCcEEEccCCcCcccccccc--ccCccce
Q 005619 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP-VQFNNLAILQILDISENNLSGSMISTL--NLSSVEH 336 (688)
Q Consensus 260 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~ 336 (688)
+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.+.....+ .+++|++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 55666666655422 2445555556666666666665443222 224556666666666 33322221111 4556666
Q ss_pred Eeeec-----------CccccCC-chhccCCCCccEEeCcCCcCCCcCchhhhc-CCCccEEecc----CCcCCCC----
Q 005619 337 LYLQS-----------NALGGSI-PNTIFRGSALETLDLRDNYFFGRIPHQINE-HSNLRALLLR----GNYLQGP---- 395 (688)
Q Consensus 337 L~L~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~---- 395 (688)
|++++ +.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66662 3333221 112233566666666666665554444443 6666666664 4455432
Q ss_pred -CchhhcCCCCCCEEEccCCc--CccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCC
Q 005619 396 -IPHQLCQLRKLSIMDLSHNR--LNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSL 472 (688)
Q Consensus 396 -~~~~~~~l~~L~~L~ls~n~--l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 472 (688)
++..+.++++|+.|++++|. +++..+..+..
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---------------------------------------------- 460 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---------------------------------------------- 460 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----------------------------------------------
Confidence 22334456666666665433 33322222211
Q ss_pred CcceEEEeeeccccccccccccccccEEEccCCccccc-CChhhhccCCCCeeeCCCCcCccC-CCccccCCCCCCeEeC
Q 005619 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD-IPSEICDLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDL 550 (688)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L 550 (688)
.+++|+.|++++|++++. ++..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|
T Consensus 461 --------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 461 --------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp --------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred --------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 134566666666666542 233445566666666666666543 2333345666666666
Q ss_pred CCCcccccCCcCC-CCCCCCCEEecC
Q 005619 551 SHNKLNGQIPPQL-TELHSLSKFDVS 575 (688)
Q Consensus 551 s~N~l~~~~p~~l-~~l~~L~~L~ls 575 (688)
++|++++.-...+ ..++.+....+.
T Consensus 521 s~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 521 QGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp ESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred cCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 6666654322222 234444444333
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.9e-31 Score=293.47 Aligned_cols=396 Identities=14% Similarity=0.046 Sum_probs=264.5
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCC-CcEEEccCCC-CCCCCC---CCCCCCcCEEEccCCCCCCCCCh---hhh
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTK-LEVLYLTNNS-FSGFQL---TSAQHGLISLDISSNNFTGKLPQ---NMG 160 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~L~~n~-l~~~~~---~~~~~~L~~L~ls~n~~~~~~~~---~~~ 160 (688)
..+++|++|++++|.+++..+..+...+++ |++|++++|. ++.... ...+++|++|++++|.+++.... .+.
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 356677777777776654444443322334 7777777665 111111 11566777777777766544222 233
Q ss_pred hcCCCCCEEEccCCCCC----cccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC---CcCcccc
Q 005619 161 IVLPKLDCMNISKNSFE----GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD---GQIFPNY 233 (688)
Q Consensus 161 ~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~ 233 (688)
..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++ ..+..+++|++|+++..... ...+..+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 46788888888888776 2344455677888888888887763 44 34567788888888753322 2334556
Q ss_pred cCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCc-hhhhCCcCCcEEEccccccCCCCcccccCCCCCc
Q 005619 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP-SWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312 (688)
Q Consensus 234 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 312 (688)
..+++|+.|+++++... .++..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 77788888888876433 566677778889999999888664333 3357789999999984322223344456788899
Q ss_pred EEEccC-----------CcCcccccccc--ccCccceEeeecCccccCCchhccC-CCCccEEeCc----CCcCCCc---
Q 005619 313 ILDISE-----------NNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFR-GSALETLDLR----DNYFFGR--- 371 (688)
Q Consensus 313 ~L~Ls~-----------n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~--- 371 (688)
+|++++ +.+++.....+ .+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 999993 56655433332 6889999999888888777666665 8899999996 6677653
Q ss_pred --CchhhhcCCCccEEeccCCc--CCCCCchhhc-CCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEec
Q 005619 372 --IPHQINEHSNLRALLLRGNY--LQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMD 446 (688)
Q Consensus 372 --~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~ 446 (688)
++..+..+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++.....+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--------------------- 484 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS--------------------- 484 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH---------------------
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH---------------------
Confidence 44456779999999997544 5554444443 489999999999998753222111
Q ss_pred ccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc-CChhhhccCCCCeee
Q 005619 447 LGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD-IPSEICDLQNIHGLN 525 (688)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~~~~~l~~L~~L~ 525 (688)
..+++|+.|++++|.+++. ++..+..+++|+.|+
T Consensus 485 ---------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 485 ---------------------------------------------RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp ---------------------------------------------TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred ---------------------------------------------hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 1157899999999998765 344557899999999
Q ss_pred CCCCcCccCCCccc-cCCCCCCeEeCCCC
Q 005619 526 LSHNFLSGSIPESF-SNLKMIESLDLSHN 553 (688)
Q Consensus 526 Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N 553 (688)
|++|++++.....+ ..++.++...+..+
T Consensus 520 ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 520 VQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999986643333 45676766655554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-30 Score=263.65 Aligned_cols=287 Identities=16% Similarity=0.131 Sum_probs=174.6
Q ss_pred CCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEE
Q 005619 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 212 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 291 (688)
|+.....+.+++.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4445556666666664 333332 4677777777777655555666777777777777777666666666777777777
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCccccc-ccc-ccCccceEeeecC-ccccCCchhccCCCCccEEeCcCCcC
Q 005619 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI-STL-NLSSVEHLYLQSN-ALGGSIPNTIFRGSALETLDLRDNYF 368 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l 368 (688)
+++|.+++..+..+..+++|++|++++|++.+... ..+ .+++|++|++++| .+.+..+..+..+++|++|++++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777765555556666777777777776665444 233 5666666666665 34433344555555566666666655
Q ss_pred CCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccc
Q 005619 369 FGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG 448 (688)
Q Consensus 369 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~ 448 (688)
.+..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----------------------- 243 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----------------------- 243 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----------------------
Confidence 555555555555555555555555432222233455555555555555432221111
Q ss_pred ccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCC
Q 005619 449 VADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSH 528 (688)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~ 528 (688)
.......++.++|++
T Consensus 244 -----------------------------------------------------------------~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 244 -----------------------------------------------------------------TGETNSLIKKFTFRN 258 (353)
T ss_dssp --------------------------------------------------------------------CCCCCCEEEEES
T ss_pred -----------------------------------------------------------------cccccchhhcccccc
Confidence 011234455555555
Q ss_pred CcCcc----CCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCccc
Q 005619 529 NFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589 (688)
Q Consensus 529 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 589 (688)
+.+++ .+|..++.+++|+.|||++|+++...+..|..+++|++|++++|++.|.+|...++
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l 323 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 323 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence 55554 36777888899999999999998444444689999999999999999988754333
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-28 Score=262.92 Aligned_cols=231 Identities=21% Similarity=0.187 Sum_probs=168.5
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCc
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLR 364 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 364 (688)
++++|++++|.+++..+..|.++++|++|++++|.+++..+..+ ++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 44444444444444444444455555555555555544444433 45555555555555554444456666777777777
Q ss_pred CCcCCCcCchhhhcCCCccEEeccCC-cCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeE
Q 005619 365 DNYFFGRIPHQINEHSNLRALLLRGN-YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMV 443 (688)
Q Consensus 365 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~ 443 (688)
+|++.+..+..+..+++|+.|++++| .+....+..+.++++|+.|++++|++++ +|. +
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~------------------- 214 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-L------------------- 214 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-C-------------------
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-c-------------------
Confidence 77776655666777778888888774 4443344567888888888888888863 221 1
Q ss_pred EecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
..+++|+.|+|++|.+++..|..|..+++|+.
T Consensus 215 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 215 ------------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp ------------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred ------------------------------------------------cccccccEEECcCCcCcccCcccccCccCCCE
Confidence 11567899999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|++|++++|++.|.|..
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999999999999999988888899999999999999999999864
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.1e-28 Score=258.02 Aligned_cols=231 Identities=24% Similarity=0.247 Sum_probs=169.5
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCc
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLR 364 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 364 (688)
+++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+ ++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44444444444444444444555555555555555544444433 45555555555555554444456666777777777
Q ss_pred CCcCCCcCchhhhcCCCccEEeccCC-cCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeE
Q 005619 365 DNYFFGRIPHQINEHSNLRALLLRGN-YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMV 443 (688)
Q Consensus 365 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~ 443 (688)
+|++.+..+..+..+++|+.|++++| .+....+..|.++++|+.|++++|+++ .+|. +
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~------------------- 203 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-L------------------- 203 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-C-------------------
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-c-------------------
Confidence 77776666667777788888888874 344334456788888888888888886 3331 1
Q ss_pred EecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
..+++|+.|||++|.+++..|..|..+++|+.
T Consensus 204 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 204 ------------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp ------------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ------------------------------------------------CCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 11567899999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|+|++|++++..+..|.++++|+.|||++|++++..+..|..+++|++|++++|++.|.|..
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999999999999999999999988888999999999999999999998864
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=253.19 Aligned_cols=275 Identities=19% Similarity=0.165 Sum_probs=174.2
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
...+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|+++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECC
Confidence 34455555555 4554432 35556666666555444445555666666666666555 3333334555666666666
Q ss_pred cCcCCCcCcccccCCCCCCEEeccCCcCCCccc-ccccCCCCCCEEEccCC-cCCCCCchhhhCCcCCcEEEccccccCC
Q 005619 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK-DGLLRSSELMVLDISNN-HLSGHIPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 222 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
+|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 666654444445556666666666666653333 34556666666666666 3444445566666667777777776666
Q ss_pred CCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhc---cCCCCccEEeCcCCcCCC----c
Q 005619 300 NIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTI---FRGSALETLDLRDNYFFG----R 371 (688)
Q Consensus 300 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~----~ 371 (688)
..|..+..+++|++|++++|.+.......+ .+++|++|++++|.+++..+..+ .....++.++++++.+.+ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 666666667777777777776655444333 46677777777777665433322 234667888888887765 3
Q ss_pred CchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc
Q 005619 372 IPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421 (688)
Q Consensus 372 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 421 (688)
+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++++..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67788999999999999999995444446899999999999999998766
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7e-29 Score=251.49 Aligned_cols=258 Identities=22% Similarity=0.222 Sum_probs=180.2
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCC--CcccccCCCCCcEEEccCCcCccccccccccCccceEe
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN--IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY 338 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 338 (688)
++|++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+.........+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4555666666655544334455566666666666655422 23445556666666666666665444333666777777
Q ss_pred eecCccccCCc-hhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC-CCchhhcCCCCCCEEEccCCcC
Q 005619 339 LQSNALGGSIP-NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSHNRL 416 (688)
Q Consensus 339 L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l 416 (688)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77777664433 466777888888888888877777778888888888888888876 5677888888899999999888
Q ss_pred ccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccccc
Q 005619 417 NGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDY 496 (688)
Q Consensus 417 ~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 496 (688)
++..|..+.+ +++
T Consensus 188 ~~~~~~~~~~-------------------------------------------------------------------l~~ 200 (306)
T 2z66_A 188 EQLSPTAFNS-------------------------------------------------------------------LSS 200 (306)
T ss_dssp CEECTTTTTT-------------------------------------------------------------------CTT
T ss_pred CCcCHHHhcC-------------------------------------------------------------------CCC
Confidence 8655554432 567
Q ss_pred ccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCC-CCCeEeCCCCcccccCCc--CCCCCCCCCEEe
Q 005619 497 MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLK-MIESLDLSHNKLNGQIPP--QLTELHSLSKFD 573 (688)
Q Consensus 497 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~ 573 (688)
|+.|++++|.+++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..+. ...-+...+.+.
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~ 280 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence 88899999999888787888999999999999999998999998884 899999999999865321 112223344445
Q ss_pred cCCCcCccCCCC
Q 005619 574 VSYNDLSGPIPD 585 (688)
Q Consensus 574 ls~N~l~~~~p~ 585 (688)
+..+.+.|..|.
T Consensus 281 ~~~~~~~C~~p~ 292 (306)
T 2z66_A 281 VEVERMECATPS 292 (306)
T ss_dssp SCGGGCBEEESG
T ss_pred ccccccccCCch
Confidence 556666665553
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.8e-28 Score=244.24 Aligned_cols=229 Identities=22% Similarity=0.217 Sum_probs=173.4
Q ss_pred cEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCC
Q 005619 288 YILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDN 366 (688)
Q Consensus 288 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 366 (688)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34455555444 223222 2456666666666665554444 5666666666666666555667777778888888888
Q ss_pred c-CCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEe
Q 005619 367 Y-FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVM 445 (688)
Q Consensus 367 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~ 445 (688)
. +....+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 6 66555777888888888888888888777778888888888888888887544333322
Q ss_pred cccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeee
Q 005619 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525 (688)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 525 (688)
+++|+.|++++|++++..+..|..+++|+.|+
T Consensus 152 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 152 ------------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 56788889999988877777899999999999
Q ss_pred CCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC
Q 005619 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586 (688)
Q Consensus 526 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 586 (688)
|++|.+++..|..|+++++|+.|++++|++++..+..+..+++|++|++++|++.|.++..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999999888999999999999999999999877777999999999999999999988754
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.8e-27 Score=242.62 Aligned_cols=235 Identities=18% Similarity=0.228 Sum_probs=170.5
Q ss_pred CCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEee
Q 005619 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYL 339 (688)
Q Consensus 260 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L 339 (688)
.+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++..+.....+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356777777777776 55666666777777777777776 5666666677777777776666633222225566666666
Q ss_pred ecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccc
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 419 (688)
++|.+.+.+|..+.. .. .+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 665555555543322 00 1122445788888888888887 677778888888888888888874
Q ss_pred cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccE
Q 005619 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499 (688)
Q Consensus 420 ~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 499 (688)
+|..+.. +++|+.
T Consensus 221 l~~~l~~-------------------------------------------------------------------l~~L~~ 233 (328)
T 4fcg_A 221 LGPAIHH-------------------------------------------------------------------LPKLEE 233 (328)
T ss_dssp CCGGGGG-------------------------------------------------------------------CTTCCE
T ss_pred Cchhhcc-------------------------------------------------------------------CCCCCE
Confidence 4443332 567888
Q ss_pred EEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcC
Q 005619 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579 (688)
Q Consensus 500 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 579 (688)
|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++|++.+.+|..+.++++|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 88888888888888888899999999999888888888888999999999999999889999999999999998887755
Q ss_pred c
Q 005619 580 S 580 (688)
Q Consensus 580 ~ 580 (688)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3e-27 Score=240.95 Aligned_cols=236 Identities=19% Similarity=0.206 Sum_probs=188.8
Q ss_pred CCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEE
Q 005619 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQIL 314 (688)
Q Consensus 235 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 314 (688)
..++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 67888888999999999999999 88999999999999999999999 778899999999999
Q ss_pred EccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC
Q 005619 315 DISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394 (688)
Q Consensus 315 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (688)
++++|++.+..+..+. .. ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 156 ~L~~n~~~~~~p~~~~-----~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 156 SIRACPELTELPEPLA-----ST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEEETTCCCCCSCSE-----EE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred ECCCCCCccccChhHh-----hc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 9999988877665431 11 11223555677777777777775 566677777777788887777774
Q ss_pred CCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCc
Q 005619 395 PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGT 474 (688)
Q Consensus 395 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (688)
+|..+..+++|++|++++|++.+.+|..+.+
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------------------------------------------------ 251 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGG------------------------------------------------ 251 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------------------------------------------------
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcC------------------------------------------------
Confidence 5556777788888888887777766654432
Q ss_pred ceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCc
Q 005619 475 QVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 554 (688)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 554 (688)
+++|+.|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.+++..|.
T Consensus 252 -------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 252 -------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred -------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 4567788888888888888888888888888888888888888888888888888888776
Q ss_pred cc
Q 005619 555 LN 556 (688)
Q Consensus 555 l~ 556 (688)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 65
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.1e-27 Score=234.52 Aligned_cols=227 Identities=21% Similarity=0.220 Sum_probs=160.3
Q ss_pred CEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccC
Q 005619 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISN 270 (688)
Q Consensus 191 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 270 (688)
++++.+++.+. .+|... .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555554 444322 34566666666666655555566666666666666666655566666666777777777
Q ss_pred Cc-CCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCC
Q 005619 271 NH-LSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSI 348 (688)
Q Consensus 271 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~ 348 (688)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 555556666677777777777777766666667777777777777777776665545 6777777777777777555
Q ss_pred chhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc
Q 005619 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421 (688)
Q Consensus 349 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 421 (688)
+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 5567778888888888888888778888888889999999998887777778888999999999998875443
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=5.2e-30 Score=285.35 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=43.4
Q ss_pred ccccEEEccCCcccccCChhh-hccCCCCeeeCCCCcCccCCCc-cccCCCCCCeEeCCCCcccccCCcCC-CCCCCCCE
Q 005619 495 DYMAGLDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSK 571 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~ 571 (688)
++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 456666666666654444444 4566666666666666443332 23345666666666666643322223 34455554
Q ss_pred EecCCC
Q 005619 572 FDVSYN 577 (688)
Q Consensus 572 L~ls~N 577 (688)
..+..+
T Consensus 536 ~~~~~~ 541 (594)
T 2p1m_B 536 EVIDER 541 (594)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 444444
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.8e-29 Score=254.31 Aligned_cols=265 Identities=20% Similarity=0.212 Sum_probs=181.8
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344455555443333444455677777777777776666677777777777777777765443 67777777777777
Q ss_pred CcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCch
Q 005619 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398 (688)
Q Consensus 319 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 398 (688)
|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred Ccccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 7776544 236777777777777644333 246688888888888776666777788888888888888766666
Q ss_pred hh-cCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceE
Q 005619 399 QL-CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVE 477 (688)
Q Consensus 399 ~~-~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (688)
.+ ..+++|++|++++|.+++. |..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------ 187 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------ 187 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECC------------------------------------------------------
T ss_pred HHhhccCcCCEEECCCCcCccc-ccc------------------------------------------------------
Confidence 55 3678888888888887632 110
Q ss_pred EEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc-
Q 005619 478 VNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN- 556 (688)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 556 (688)
..+++|+.|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus 188 --------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 188 --------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp --------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred --------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 0145677788888888754 444777888888888888887 46667777888888888888887
Q ss_pred ccCCcCCCCCCCCCEEecCC-CcCccCC
Q 005619 557 GQIPPQLTELHSLSKFDVSY-NDLSGPI 583 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~-N~l~~~~ 583 (688)
+.+|..+..+++|+.+++++ +.+.|..
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cCHHHHHhccccceEEECCCchhccCCc
Confidence 66677777777787777773 3455543
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-26 Score=246.72 Aligned_cols=228 Identities=23% Similarity=0.240 Sum_probs=158.3
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYL 339 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L 339 (688)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+ .+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 455666666666655555556666666666666666655555556666666666666666665555544 5666666666
Q ss_pred ecCccccCCchhccCCCCccEEeCcCC-cCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcc
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDN-YFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 418 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 418 (688)
++|.++...+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 666666444456666777777777774 33333334577778888888888888743 3 46778888888888888876
Q ss_pred ccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccccccc
Q 005619 419 SIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498 (688)
Q Consensus 419 ~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 498 (688)
..|..+.+ +++|+
T Consensus 233 ~~~~~~~~-------------------------------------------------------------------l~~L~ 245 (452)
T 3zyi_A 233 IRPGSFHG-------------------------------------------------------------------LSSLK 245 (452)
T ss_dssp ECGGGGTT-------------------------------------------------------------------CTTCC
T ss_pred cCcccccC-------------------------------------------------------------------ccCCC
Confidence 66655433 45788
Q ss_pred EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 499 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88888888888888888888889999999998887777788888889999999888764
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=245.61 Aligned_cols=228 Identities=26% Similarity=0.287 Sum_probs=151.5
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYL 339 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L 339 (688)
++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+ .+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 445555555555555555555555555555555555555555555556666666666666555554444 5566666666
Q ss_pred ecCccccCCchhccCCCCccEEeCcCCc-CCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcc
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDNY-FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 418 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 418 (688)
++|.++...+..+..+++|++|++++|. +....+..|..+++|+.|++++|+++. +| .+..+++|+.|++++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 6666654444556666777777777643 333333456777777777777777763 34 36677788888888888776
Q ss_pred ccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccccccc
Q 005619 419 SIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498 (688)
Q Consensus 419 ~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 498 (688)
..|..+.+ +++|+
T Consensus 222 ~~~~~~~~-------------------------------------------------------------------l~~L~ 234 (440)
T 3zyj_A 222 IRPGSFQG-------------------------------------------------------------------LMHLQ 234 (440)
T ss_dssp ECTTTTTT-------------------------------------------------------------------CTTCC
T ss_pred cChhhhcc-------------------------------------------------------------------CccCC
Confidence 55554432 45677
Q ss_pred EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 499 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888888888888888888888888888888887777778888888888888887753
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.4e-28 Score=247.79 Aligned_cols=249 Identities=19% Similarity=0.203 Sum_probs=173.3
Q ss_pred CCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC-CCCccccc-------CCCCCcEEEccCCcCccccccc--
Q 005619 259 RSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE-GNIPVQFN-------NLAILQILDISENNLSGSMIST-- 328 (688)
Q Consensus 259 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~-- 328 (688)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|++++..+..
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344556666666666 445444433 666666666653 23343333 4666666666666666544443
Q ss_pred -cccCccceEeeecCccccCCchhccCC-----CCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCC--Cchhh
Q 005619 329 -LNLSSVEHLYLQSNALGGSIPNTIFRG-----SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP--IPHQL 400 (688)
Q Consensus 329 -~~~~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 400 (688)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..++.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 2566677777777777654 5555544 7788888888888777777788888888888888887654 23344
Q ss_pred --cCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEE
Q 005619 401 --CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEV 478 (688)
Q Consensus 401 --~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (688)
..+++|++|++++|++++ +|.....+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~-------------------------------------------------- 224 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMET-PSGVCSALA-------------------------------------------------- 224 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCC-HHHHHHHHH--------------------------------------------------
T ss_pred HhccCCCCCEEECCCCcCcc-hHHHHHHHH--------------------------------------------------
Confidence 778888899998888873 221111100
Q ss_pred EeeeccccccccccccccccEEEccCCcccccCC-hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 479 NFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP-SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
..++.|+.||+++|++++..| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|||++|++++
T Consensus 225 -------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 225 -------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp -------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred -------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence 115678889999999988775 55677899999999999999 7787776 899999999999997
Q ss_pred cCCcCCCCCCCCCEEecCCCcCcc
Q 005619 558 QIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 558 ~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
. |. +..+++|++|++++|++++
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 55 8999999999999999886
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.9e-29 Score=277.49 Aligned_cols=445 Identities=12% Similarity=0.092 Sum_probs=228.6
Q ss_pred CEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCccccccc--------------CCCCCcceeEEECCCCCCCC-cc
Q 005619 21 EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIE--------------NCLPTFQLKVLSLPNCNLGV-IP 85 (688)
Q Consensus 21 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~--------------~~~~l~~L~~L~l~~n~l~~-lp 85 (688)
+.++++.+... .|...+..+++|+.|+++++......... ....+++|++|++++|.++. .+
T Consensus 46 ~~l~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~ 122 (594)
T 2p1m_B 46 RKVFIGNCYAV---SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122 (594)
T ss_dssp CEEEESSTTSS---CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH
T ss_pred eEEeecccccc---CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH
Confidence 34555544322 23345667777777777776543222110 01235566667776666532 23
Q ss_pred hhhh-CCCCCCEEECCCC-cCCCCCchHHhhCCCCCcEEEccCCCCCCCC------CCCCCCCcCEEEccCCC--CCCCC
Q 005619 86 NFLL-HQFNLKYLDLSHN-KLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ------LTSAQHGLISLDISSNN--FTGKL 155 (688)
Q Consensus 86 ~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~L~~L~ls~n~--~~~~~ 155 (688)
..+. .+++|++|++++| .+++.....+..++++|++|++++|.+++.. ....+++|++|++++|. ++...
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 3333 5667777777766 3432212233345677777777766655422 11245566666666665 22111
Q ss_pred ChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccC
Q 005619 156 PQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN 235 (688)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 235 (688)
...+...+++|++|++++|...+.++..+..+++|++|+++.+... +..+.+.+ .+..+.+
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~-l~~~l~~ 263 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE------------------VRPDVYSG-LSVALSG 263 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC------------------CCHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc------------------cchhhHHH-HHHHHhc
Confidence 1222224566666666666222225555666666666665443210 00111111 1123334
Q ss_pred CCCCCEE-eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCc-hhhhCCcCCcEEEccccccCCC-CcccccCCCCCc
Q 005619 236 LTRLLFL-YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP-SWMGNFSNLYILSMSKNLLEGN-IPVQFNNLAILQ 312 (688)
Q Consensus 236 l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~ 312 (688)
+++|+.| .+..... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +... .+.....+++|+
T Consensus 264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 4444444 2221111 1222222334555555555555432211 11334555555555555 2211 111122355566
Q ss_pred EEEcc---------CCcCcccccccc--ccCccceEeeecCccccCCchhcc-CCCCccEEeCc--C----CcCCCc---
Q 005619 313 ILDIS---------ENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIF-RGSALETLDLR--D----NYFFGR--- 371 (688)
Q Consensus 313 ~L~Ls---------~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~--- 371 (688)
+|++. .+.+++.....+ .+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 66552 233433222222 366777776666666654444443 46777777777 3 444321
Q ss_pred --CchhhhcCCCccEEeccCCcCCCCCchhhcC-CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccc
Q 005619 372 --IPHQINEHSNLRALLLRGNYLQGPIPHQLCQ-LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG 448 (688)
Q Consensus 372 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~ 448 (688)
++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+..
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~---------------------- 478 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS---------------------- 478 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH----------------------
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh----------------------
Confidence 122356678888888876 555444445544 788888888888876544333311
Q ss_pred ccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCCh-hhhccCCCCeeeCC
Q 005619 449 VADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPS-EICDLQNIHGLNLS 527 (688)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~L~Ls 527 (688)
.+++|+.|+|++|.+++..+. ....+++|+.|+++
T Consensus 479 --------------------------------------------~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 479 --------------------------------------------GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp --------------------------------------------HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred --------------------------------------------cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 156788888888888654443 33457888888888
Q ss_pred CCcCccCCCccc-cCCCCCCeEeCCCCccc
Q 005619 528 HNFLSGSIPESF-SNLKMIESLDLSHNKLN 556 (688)
Q Consensus 528 ~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~ 556 (688)
+|.++......+ ..+++|+...+..+.-.
T Consensus 515 ~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 515 SCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 888864433334 45677766666655443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.3e-28 Score=259.42 Aligned_cols=235 Identities=23% Similarity=0.242 Sum_probs=136.2
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQ 340 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~ 340 (688)
++|+.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 356666666666666555666666666666666666654433 5666666666666666654332 2556666666
Q ss_pred cCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhc-CCCCCCEEEccCCcCccc
Q 005619 341 SNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGS 419 (688)
Q Consensus 341 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~ 419 (688)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666543332 235566666666666666565666666666666666666665555554 566666666666666532
Q ss_pred cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccE
Q 005619 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499 (688)
Q Consensus 420 ~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 499 (688)
.+. ..++.|+.
T Consensus 185 ~~~---------------------------------------------------------------------~~l~~L~~ 195 (487)
T 3oja_A 185 KGQ---------------------------------------------------------------------VVFAKLKT 195 (487)
T ss_dssp ECC---------------------------------------------------------------------CCCTTCCE
T ss_pred ccc---------------------------------------------------------------------ccCCCCCE
Confidence 110 01345566
Q ss_pred EEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc-ccCCcCCCCCCCCCEEecC
Q 005619 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTELHSLSKFDVS 575 (688)
Q Consensus 500 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 575 (688)
|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 196 L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 196 LDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6666666664333 35566666666666666663 4555566666666666666665 4445555555555555554
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.1e-25 Score=243.02 Aligned_cols=154 Identities=26% Similarity=0.295 Sum_probs=86.8
Q ss_pred CCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEE
Q 005619 188 QGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLD 267 (688)
Q Consensus 188 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 267 (688)
.+++.|++++|.++ .+|.... ++|+.|++++|.++. +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35778888888877 6666442 577777777777764 233 45677777777777663 333 456667777
Q ss_pred ccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccC
Q 005619 268 ISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGS 347 (688)
Q Consensus 268 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 347 (688)
+++|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++.+. .+++|+.|++++|.++ .
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-C
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-C
Confidence 777666643 22 34566666666666653 2322 2556666666665554321 2334455555555544 2
Q ss_pred CchhccCCCCccEEeCcCCcC
Q 005619 348 IPNTIFRGSALETLDLRDNYF 368 (688)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~n~l 368 (688)
+| ..+++|+.|++++|++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp CC---CCCTTCCEEECCSSCC
T ss_pred Cc---ccCCCCcEEECCCCCC
Confidence 33 2234444444444444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.2e-28 Score=245.33 Aligned_cols=249 Identities=22% Similarity=0.207 Sum_probs=185.3
Q ss_pred cCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC-CCCchhhh-------CCcCCcEEEccccccCCCCcccc
Q 005619 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS-GHIPSWMG-------NFSNLYILSMSKNLLEGNIPVQF 305 (688)
Q Consensus 234 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~l 305 (688)
...++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666666666666 444444332 666777777663 34454444 57788888888888877777765
Q ss_pred --cCCCCCcEEEccCCcCcccccccc-cc-----CccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCc--Cchh
Q 005619 306 --NNLAILQILDISENNLSGSMISTL-NL-----SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR--IPHQ 375 (688)
Q Consensus 306 --~~l~~L~~L~Ls~n~l~~~~~~~~-~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~ 375 (688)
..+++|++|++++|++++. +..+ .+ ++|++|++++|++++..+..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7788888888888888776 3333 44 7889999999988877778888889999999999987664 2334
Q ss_pred h--hcCCCccEEeccCCcCCCC---CchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccc
Q 005619 376 I--NEHSNLRALLLRGNYLQGP---IPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVA 450 (688)
Q Consensus 376 ~--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 450 (688)
+ ..+++|++|++++|++++. ....+..+++|++|++++|++++..|....
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------- 249 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------------------------- 249 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-------------------------
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh-------------------------
Confidence 4 7889999999999999832 223456789999999999999865532110
Q ss_pred ccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCc
Q 005619 451 DIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF 530 (688)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 530 (688)
..++.|+.|+|++|+++ .+|..+. ++|+.|+|++|+
T Consensus 250 -----------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 250 -----------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp -----------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred -----------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 11567999999999998 7777666 899999999999
Q ss_pred CccCCCccccCCCCCCeEeCCCCccccc
Q 005619 531 LSGSIPESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 531 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
+++. |. +..+++|++|+|++|++++.
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9966 66 89999999999999999863
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.9e-25 Score=241.46 Aligned_cols=265 Identities=26% Similarity=0.293 Sum_probs=153.7
Q ss_pred ceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCC
Q 005619 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSN 149 (688)
Q Consensus 70 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n 149 (688)
+++.|++++|.++.+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++.++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 45666666666666665443 56777777777766 4554 35667777777776665432 5566666666666
Q ss_pred CCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcC
Q 005619 150 NFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI 229 (688)
Q Consensus 150 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 229 (688)
.++ .+|. .+++|+.|++++|.++. +|.. +++|++|++++|.++ .+|. .+.+|+.|++++|.++..
T Consensus 112 ~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l- 176 (622)
T 3g06_A 112 PLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSL- 176 (622)
T ss_dssp CCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-
T ss_pred cCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCCC-
Confidence 666 4444 35666667776666664 3332 366667777776665 3432 235666666666666642
Q ss_pred cccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCC
Q 005619 230 FPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLA 309 (688)
Q Consensus 230 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 309 (688)
+ ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 2 334566666666666653 2221 3566666666666653 232 23556666666666654 23 3345
Q ss_pred CCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhh
Q 005619 310 ILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQIN 377 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 377 (688)
+|+.|++++|.++..+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+.
T Consensus 242 ~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 56666666666654333 3455666666666655 4555555566666666666666555554443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=243.10 Aligned_cols=258 Identities=17% Similarity=0.160 Sum_probs=183.0
Q ss_pred cCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEc
Q 005619 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220 (688)
Q Consensus 141 L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 220 (688)
++..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 344555555554 4555555567788888888888887777788888888888888888874433 567888888888
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCC
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 300 (688)
++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 888876432 3378888888888887654433 46788888888888877676777788888888888888766
Q ss_pred Ccccc-cCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcC
Q 005619 301 IPVQF-NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH 379 (688)
Q Consensus 301 ~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 379 (688)
.+..+ ..+++|++|++++|.+++.... ..+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 66655 3677888888888877765322 246777777777777763 4444666677777777777775 345566667
Q ss_pred CCccEEeccCCcCC-CCCchhhcCCCCCCEEEccC
Q 005619 380 SNLRALLLRGNYLQ-GPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 380 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~ 413 (688)
++|+.|++++|++. +..+..+..+++|+.+++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777777777776 55666666777777776663
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=9.4e-26 Score=224.71 Aligned_cols=215 Identities=23% Similarity=0.228 Sum_probs=157.7
Q ss_pred CCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEecc
Q 005619 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 388 (688)
+|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555544333 55566666666666654445566667777777777777766666677777778888888
Q ss_pred CCcCCCCCchhhcCCCCCCEEEccCCcCccc-cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
+|.+.+..+..+..+++|++|++++|.+++. +|..+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 8877766666677788888888888887652 3554432
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCC----eeeCCCCcCccCCCccccCCC
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIH----GLNLSHNFLSGSIPESFSNLK 543 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~ 543 (688)
+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+.. .
T Consensus 148 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~ 200 (276)
T 2z62_A 148 --------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I 200 (276)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C
T ss_pred --------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C
Confidence 45678888888888877777777777777 8999999999766666554 4
Q ss_pred CCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCc
Q 005619 544 MIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592 (688)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 592 (688)
+|+.|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 8999999999999887778899999999999999999999876544433
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.7e-26 Score=242.40 Aligned_cols=221 Identities=21% Similarity=0.174 Sum_probs=192.9
Q ss_pred CCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEe
Q 005619 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362 (688)
Q Consensus 283 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 362 (688)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ ...+++|++|++++|.+++. + ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 34589999999999999888999999999999999999998766 44899999999999999843 3 238999999
Q ss_pred CcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccccccee
Q 005619 363 LRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVM 442 (688)
Q Consensus 363 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~ 442 (688)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------- 166 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------- 166 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence 999999877654 4688999999999999988989999999999999999999877765531
Q ss_pred EEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCC
Q 005619 443 VVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIH 522 (688)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~ 522 (688)
.++.|+.|+|++|.+++..+ +..+++|+
T Consensus 167 --------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 194 (487)
T 3oja_A 167 --------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLK 194 (487)
T ss_dssp --------------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCC
T ss_pred --------------------------------------------------hCCcccEEecCCCccccccc--cccCCCCC
Confidence 15789999999999997743 34699999
Q ss_pred eeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccC
Q 005619 523 GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 523 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 582 (688)
.|+|++|.+++.+| .++.+++|+.|+|++|++++ +|..+..+++|+.|++++|++.|.
T Consensus 195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 99999999997555 59999999999999999996 677899999999999999999853
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=9.4e-25 Score=216.46 Aligned_cols=210 Identities=23% Similarity=0.206 Sum_probs=171.4
Q ss_pred CCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccC
Q 005619 310 ILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRG 389 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 389 (688)
..+.++++++.++..+... .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4566777777666544322 25677788888877755556777888888888888888766666678888999999999
Q ss_pred CcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCC
Q 005619 390 NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469 (688)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 469 (688)
|++++..+..+..+++|++|++++|++++..|..+.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 9988777777888899999999999887654443322
Q ss_pred CCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEe
Q 005619 470 RSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549 (688)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 549 (688)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+
T Consensus 132 ------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 132 ------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 56789999999999987777899999999999999999988888899999999999
Q ss_pred CCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcc
Q 005619 550 LSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQ 588 (688)
Q Consensus 550 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 588 (688)
|++|++++..+..+..+++|++|++++|++.|.|+....
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 226 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHH
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHH
Confidence 999999988888899999999999999999999875433
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.6e-24 Score=212.07 Aligned_cols=207 Identities=22% Similarity=0.162 Sum_probs=164.3
Q ss_pred ccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccE
Q 005619 305 FNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRA 384 (688)
Q Consensus 305 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 384 (688)
++.++++++++++++.++..+... .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 455566666666666666544333 2567777777777776666677778888888888888765433 267888888
Q ss_pred EeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceeccc
Q 005619 385 LLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSL 464 (688)
Q Consensus 385 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 464 (688)
|++++|+++ .+|..+..+++|++|++++|++++..|..+.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 888888887 56777888889999999999888554444432
Q ss_pred CCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCC
Q 005619 465 DGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKM 544 (688)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 544 (688)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++
T Consensus 123 -----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 123 -----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp -----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred -----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 567888999999999888888899999999999999999777778899999
Q ss_pred CCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCC
Q 005619 545 IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 584 (688)
|+.|+|++|+++ .+|..+..+++|+++++++|++.|.|.
T Consensus 174 L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999999999999 678888888999999999999999873
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=6.2e-24 Score=208.08 Aligned_cols=213 Identities=21% Similarity=0.215 Sum_probs=169.4
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEcc
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 412 (688)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777776 5665544 578999999999988888888899999999999999998888888999999999999
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|++++..+..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 99998544443322
Q ss_pred ccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEE
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 572 (688)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|
T Consensus 106 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 -LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 5678999999999998888888999999999999999998888889999999999999999998888899999999999
Q ss_pred ecCCCcCccCCCCCcccCCcCc------cccCCCCCCCCCCCCCCCCCcc
Q 005619 573 DVSYNDLSGPIPDKEQFSTFDE------SSYRGNLHLCGPPINKSCTNLL 616 (688)
Q Consensus 573 ~ls~N~l~~~~p~~~~~~~~~~------~~~~~n~~l~~~p~~~~C~~~~ 616 (688)
++++|+++|.++...++..|.. ....|+ .+|+.|....|..+.
T Consensus 185 ~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~ 233 (251)
T 3m19_A 185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDGK 233 (251)
T ss_dssp ECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTSC
T ss_pred EeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCCc
Confidence 9999999998554433322211 112233 367778888887654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.4e-23 Score=207.25 Aligned_cols=225 Identities=19% Similarity=0.213 Sum_probs=130.1
Q ss_pred EEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccC
Q 005619 144 LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNN 223 (688)
Q Consensus 144 L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 223 (688)
.+.++..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444444 4555432 45677777777766655556666777777777777665 444444556666666666666
Q ss_pred cCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCC-CchhhhCCcCCcEEEccccccCCCCc
Q 005619 224 NFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGH-IPSWMGNFSNLYILSMSKNLLEGNIP 302 (688)
Q Consensus 224 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 302 (688)
.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 66655555566666666666666666554444555566666666666665542 35555555555555555555554444
Q ss_pred ccccCCCCCcEEEccCCcCccccccccccCccc-eEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCC
Q 005619 303 VQFNNLAILQILDISENNLSGSMISTLNLSSVE-HLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSN 381 (688)
Q Consensus 303 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 381 (688)
..+..+++|+ .+. +|++++|.+++ ++.......+|+.|++++|++++..+..+..+++
T Consensus 167 ~~~~~l~~L~--------------------~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 167 TDLRVLHQMP--------------------LLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGGHHHHTCT--------------------TCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred HHhhhhhhcc--------------------ccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 4444444333 111 45555555542 2222333346777777777776655555667777
Q ss_pred ccEEeccCCcCCC
Q 005619 382 LRALLLRGNYLQG 394 (688)
Q Consensus 382 L~~L~L~~n~l~~ 394 (688)
|+.|++++|++.+
T Consensus 226 L~~L~l~~N~~~c 238 (276)
T 2z62_A 226 LQKIWLHTNPWDC 238 (276)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEEccCCcccc
Confidence 7777777777764
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.1e-24 Score=225.63 Aligned_cols=258 Identities=20% Similarity=0.194 Sum_probs=136.8
Q ss_pred EeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCc----hhhhCCc-CCcEEEccccccCCCCcccccCCCCCcEEEc
Q 005619 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP----SWMGNFS-NLYILSMSKNLLEGNIPVQFNNLAILQILDI 316 (688)
Q Consensus 242 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 316 (688)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 3455555555555444444445555555555554443 3444444 45555555555544444443332
Q ss_pred cCCcCcccccccc-c-cCccceEeeecCccccCCchh----ccCC-CCccEEeCcCCcCCCcCchhhh----c-CCCccE
Q 005619 317 SENNLSGSMISTL-N-LSSVEHLYLQSNALGGSIPNT----IFRG-SALETLDLRDNYFFGRIPHQIN----E-HSNLRA 384 (688)
Q Consensus 317 s~n~l~~~~~~~~-~-~~~L~~L~L~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~ 384 (688)
+ . .++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+. . .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 0 0 144555555555554433332 2222 5566666666666554443332 2 246666
Q ss_pred EeccCCcCCCCCc----hhhcCCC-CCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccc
Q 005619 385 LLLRGNYLQGPIP----HQLCQLR-KLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNST 459 (688)
Q Consensus 385 L~L~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (688)
|++++|.+++..+ ..+..++ +|++|++++|++++..+..+...-
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------- 191 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------- 191 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-------------------------------
Confidence 6666666654332 2334443 666777777666655554443321
Q ss_pred eecccCCCCCCCCCcceEEEeeecccccccccccc-ccccEEEccCCccccc----CChhhhc-cCCCCeeeCCCCcCcc
Q 005619 460 VQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL-DYMAGLDLSSNKLTGD----IPSEICD-LQNIHGLNLSHNFLSG 533 (688)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~ 533 (688)
... +.|+.|||++|.+++. ++..+.. .++|+.|+|++|.+++
T Consensus 192 --------------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 192 --------------------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp --------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred --------------------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 002 3566677777766652 3344444 3467777777777765
Q ss_pred CCC----ccccCCCCCCeEeCCCCccccc-------CCcCCCCCCCCCEEecCCCcCccC
Q 005619 534 SIP----ESFSNLKMIESLDLSHNKLNGQ-------IPPQLTELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 534 ~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~~~ 582 (688)
..+ ..+..+++|+.|+|++|++.+. ++..+..+++|++||+++|++...
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 443 3345667777777777774432 233566677777777777777654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6e-23 Score=203.58 Aligned_cols=221 Identities=21% Similarity=0.225 Sum_probs=125.0
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
.+..+++..+.+... .....+++|+.|++++|.+.... ....+++|++|++++|.+++ + ..+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 344445555544422 23445666777777777665432 22256666666666666653 2 2455566666666666
Q ss_pred CcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEe
Q 005619 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVM 445 (688)
Q Consensus 366 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~ 445 (688)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------- 155 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------------- 155 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-------------------
Confidence 6665555555566666666666666666555555566666666666666665333322211
Q ss_pred cccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeee
Q 005619 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525 (688)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 525 (688)
+++|+.|++++|++++..+..|+.+++|+.|+
T Consensus 156 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 156 ------------------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 34555666666666655555555666666666
Q ss_pred CCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 526 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|++|++++..|..++.+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 666666655555556666666666666655543 23455556666666665553
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.8e-24 Score=220.93 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=119.1
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCccc----ccccCCC-CCCEEEccCCcCCCCCchhhhCC-----cC
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK----DGLLRSS-ELMVLDISNNHLSGHIPSWMGNF-----SN 286 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 286 (688)
.++++.|.+++..+..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888777777779999999999997766 6778888 89999999999998878777765 89
Q ss_pred CcEEEccccccCCCCccccc----CC-CCCcEEEccCCcCcccccccc-----c-cCccceEeeecCccccCCch----h
Q 005619 287 LYILSMSKNLLEGNIPVQFN----NL-AILQILDISENNLSGSMISTL-----N-LSSVEHLYLQSNALGGSIPN----T 351 (688)
Q Consensus 287 L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~~~~-----~-~~~L~~L~L~~n~l~~~~~~----~ 351 (688)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++.....+ . .++|++|++++|.+++..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998876665443 33 778888888888776554332 1 24556666665555533222 2
Q ss_pred ccCCC-CccEEeCcCCcCCCcCchhhh----cC-CCccEEeccCCcCC
Q 005619 352 IFRGS-ALETLDLRDNYFFGRIPHQIN----EH-SNLRALLLRGNYLQ 393 (688)
Q Consensus 352 ~~~~~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~ 393 (688)
+...+ +|++|++++|++++..+..+. .+ ++|+.|++++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 22222 455555555555444333222 22 24555555555444
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.4e-22 Score=195.56 Aligned_cols=204 Identities=22% Similarity=0.233 Sum_probs=124.7
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
..+.++++++.++ .+|... .+++++|++++|.++...+..|..+++|++|++++|.++...
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~--------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP--------------- 77 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC---------------
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC---------------
Confidence 3556666666665 444432 134555555555555444444555555555555555554333
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccC
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGS 347 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~ 347 (688)
+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+++.
T Consensus 78 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 78 ---------AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp ---------TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 3334444455555555554444444444555555555555555555444444 555666666666666544
Q ss_pred CchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc
Q 005619 348 IPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420 (688)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 420 (688)
.+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 4445667778888888888887776667888888888888888888766677888888999999999887554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.6e-23 Score=202.12 Aligned_cols=185 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred cCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCE
Q 005619 162 VLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241 (688)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 241 (688)
.+++|++|++++|.+++. +.+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 355555555555555532 24555556666666666555 344444455556666666666655554455556666666
Q ss_pred EeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcC
Q 005619 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321 (688)
Q Consensus 242 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 321 (688)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 66666666655555556666666666666666655555566666666666666666665555566666666666666655
Q ss_pred ccccccccccCccceEeeecCccccCCchhccCC
Q 005619 322 SGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG 355 (688)
Q Consensus 322 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 355 (688)
.+ .+++|+.+++..|.++|.+|..++.+
T Consensus 218 ~~------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 218 DC------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CC------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cc------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 43 24455666666666666666555443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=227.05 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=152.0
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchh----hhCCcCCcEEEcccccc---CCCCcccccCCCCCcEEEccCCcCccccc
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSW----MGNFSNLYILSMSKNLL---EGNIPVQFNNLAILQILDISENNLSGSMI 326 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 326 (688)
+..+..+++|++|++++|.++...+.. +..+++|++|++++|.+ .+.+|..+..+ ..
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l----------------~~ 88 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL----------------LQ 88 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH----------------HH
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH----------------HH
Confidence 334445556666666666655432222 34455555555555422 22223222100 00
Q ss_pred cccccCccceEeeecCcccc----CCchhccCCCCccEEeCcCCcCCCcCchhh----hcC---------CCccEEeccC
Q 005619 327 STLNLSSVEHLYLQSNALGG----SIPNTIFRGSALETLDLRDNYFFGRIPHQI----NEH---------SNLRALLLRG 389 (688)
Q Consensus 327 ~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L~~ 389 (688)
....+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 00134555555555555554 245556666777777777777644333333 233 7788888888
Q ss_pred CcCC-CCCc---hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccC
Q 005619 390 NYLQ-GPIP---HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLD 465 (688)
Q Consensus 390 n~l~-~~~~---~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 465 (688)
|+++ +.++ ..+..+++|+.|++++|+++......+..-.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~------------------------------------- 211 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG------------------------------------- 211 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-------------------------------------
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-------------------------------------
Confidence 8776 3333 3566777888888888877621100010000
Q ss_pred CCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccc----ccCChhhhccCCCCeeeCCCCcCccC----CCc
Q 005619 466 GIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT----GDIPSEICDLQNIHGLNLSHNFLSGS----IPE 537 (688)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 537 (688)
...+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|.
T Consensus 212 -------------------------l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 212 -------------------------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp -------------------------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred -------------------------hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 011567788888888885 56777788888888888888888865 456
Q ss_pred cc--cCCCCCCeEeCCCCcccc----cCCcCC-CCCCCCCEEecCCCcCccCCC
Q 005619 538 SF--SNLKMIESLDLSHNKLNG----QIPPQL-TELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 538 ~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~~p 584 (688)
.+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 66 338888888888888887 466666 567888888888888887654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.9e-23 Score=214.58 Aligned_cols=249 Identities=18% Similarity=0.251 Sum_probs=179.5
Q ss_pred CCCEEEccCCcCCCCCchhhhCC--cCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccc-ccccc-ccCccceE
Q 005619 262 ELMVLDISNNHLSGHIPSWMGNF--SNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS-MISTL-NLSSVEHL 337 (688)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~-~~~~L~~L 337 (688)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+ .+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666654 3445555 6777777777777655544 44577777788877776654 33333 67788888
Q ss_pred eeecCccccCCchhccCCCCccEEeCcCC-cCCCc-CchhhhcCCCccEEeccCC-cCCCC-CchhhcCCC-CCCEEEcc
Q 005619 338 YLQSNALGGSIPNTIFRGSALETLDLRDN-YFFGR-IPHQINEHSNLRALLLRGN-YLQGP-IPHQLCQLR-KLSIMDLS 412 (688)
Q Consensus 338 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~ls 412 (688)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888877777777888888999999988 56552 5666788899999999999 88754 566778888 99999999
Q ss_pred CC--cCc-cccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 413 HN--RLN-GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 413 ~n--~l~-~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
+| .++ +.+|..+.+
T Consensus 204 ~~~~~~~~~~l~~~~~~--------------------------------------------------------------- 220 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRR--------------------------------------------------------------- 220 (336)
T ss_dssp SCGGGSCHHHHHHHHHH---------------------------------------------------------------
T ss_pred CCcccCCHHHHHHHHhh---------------------------------------------------------------
Confidence 98 454 233332222
Q ss_pred cccccccccEEEccCCc-ccccCChhhhccCCCCeeeCCCCc-CccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNK-LTGDIPSEICDLQNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 567 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 567 (688)
+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++. ..+..+.
T Consensus 221 ----~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~ 292 (336)
T 2ast_B 221 ----CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLK 292 (336)
T ss_dssp ----CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHH
T ss_pred ----CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHH
Confidence 5678999999998 777788889999999999999995 33222236788999999999998 332 2344442
Q ss_pred -CCCEEecCCCcCccCCCC
Q 005619 568 -SLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 568 -~L~~L~ls~N~l~~~~p~ 585 (688)
.+..|++++|++++..|.
T Consensus 293 ~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 293 EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp HHSTTSEESCCCSCCTTCS
T ss_pred hhCcceEEecccCccccCC
Confidence 477778899999988775
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.4e-22 Score=198.16 Aligned_cols=203 Identities=24% Similarity=0.197 Sum_probs=144.2
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
+.+++++++++++++.++.+|..+. +++++|++++|.+++..+ ..+..+++|++|++++|.++..+....+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 4556677788888888877776553 578888888888874333 3456788888888888888776555567777788
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 224 (688)
++++|+++ .+|..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 88877777 6666553 6777888888888777666677777777888888777776 5666666667777777777777
Q ss_pred CCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC
Q 005619 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS 274 (688)
Q Consensus 225 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 274 (688)
++...+..|..+++|+.|++++|.++ .+|..+....+|+.+++++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77655555666777777777777766 45555555666666666666654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=205.57 Aligned_cols=232 Identities=18% Similarity=0.176 Sum_probs=142.1
Q ss_pred CCCEEEccCCcCCCCCch---hhhCCcCCcEEEccccccCCCCcccc--cCCCCCcEEEccCCcCccccccccccCccce
Q 005619 262 ELMVLDISNNHLSGHIPS---WMGNFSNLYILSMSKNLLEGNIPVQF--NNLAILQILDISENNLSGSMISTLNLSSVEH 336 (688)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 336 (688)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------- 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------- 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-------
Confidence 456666666554321100 01123446666666666555555544 455555555555555443211000
Q ss_pred EeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCC--C--chhhcCCCCCCEEEcc
Q 005619 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP--I--PHQLCQLRKLSIMDLS 412 (688)
Q Consensus 337 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~ls 412 (688)
...+..+++|++|++++|++.+..+..++.+++|++|++++|++.+. + +..+..+++|++|+++
T Consensus 138 ------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 138 ------------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp ------------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ------------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 02233456666666666666666666666667777777777765432 1 1223567778888888
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|+++ .+|.....+. .
T Consensus 206 ~N~l~-~l~~~~~~l~---------------------------------------------------------------~ 221 (310)
T 4glp_A 206 NTGME-TPTGVCAALA---------------------------------------------------------------A 221 (310)
T ss_dssp SSCCC-CHHHHHHHHH---------------------------------------------------------------H
T ss_pred CCCCC-chHHHHHHHH---------------------------------------------------------------h
Confidence 88775 2222111000 1
Q ss_pred ccccccEEEccCCcccccCChhhhcc---CCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDL---QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
.++.|++|||++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 14677888888888887777777766 58999999999998 6677664 7899999999999865 33 6778899
Q ss_pred CEEecCCCcCcc
Q 005619 570 SKFDVSYNDLSG 581 (688)
Q Consensus 570 ~~L~ls~N~l~~ 581 (688)
++|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999998864
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.8e-24 Score=223.32 Aligned_cols=252 Identities=14% Similarity=0.207 Sum_probs=154.0
Q ss_pred CcccccCCCCCCEEeccCCcCCCccc----ccccCCCCCCEEEccCCcCC---CCCchhh-------hCCcCCcEEEccc
Q 005619 229 IFPNYVNLTRLLFLYLDNNHFSGKIK----DGLLRSSELMVLDISNNHLS---GHIPSWM-------GNFSNLYILSMSK 294 (688)
Q Consensus 229 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~---~~~~~~~-------~~l~~L~~L~l~~ 294 (688)
++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45567788999999999999987644 34678999999999997543 4555554 5778888888888
Q ss_pred cccCC----CCcccccCCCCCcEEEccCCcCcccccccc-c-cCccceEeeecCccccCCchhccCCCCccEEeCcCCcC
Q 005619 295 NLLEG----NIPVQFNNLAILQILDISENNLSGSMISTL-N-LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYF 368 (688)
Q Consensus 295 n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 368 (688)
|.+.+ .++..+..+++|++|++++|.++...+..+ . +..+ ..+.+.+ ..++|++|++++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l-----~~~~~~~-------~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL-----AVNKKAK-------NAPPLRSIICGRNRL 171 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH-----HHHHHHH-------TCCCCCEEECCSSCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH-----hhhhhcc-------cCCCCcEEECCCCCC
Confidence 88876 356677778888888888888765433322 1 1000 0000000 004555555555555
Q ss_pred C-CcCc---hhhhcCCCccEEeccCCcCCC-----CCchhhcCCCCCCEEEccCCcCc----cccchhhhhhhhcccCCc
Q 005619 369 F-GRIP---HQINEHSNLRALLLRGNYLQG-----PIPHQLCQLRKLSIMDLSHNRLN----GSIPACITNLLFWKVGSR 435 (688)
Q Consensus 369 ~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~----~~~p~~l~~l~~~~~~~~ 435 (688)
+ +..+ ..+..+++|++|++++|+++. ..+..+..+++|+.|++++|.++ +.+|..+..
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~--------- 242 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--------- 242 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG---------
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc---------
Confidence 4 2222 244455566666666665541 12224555666666666666654 222222211
Q ss_pred ccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc----C
Q 005619 436 YLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD----I 511 (688)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~ 511 (688)
++.|+.|+|++|.+++. +
T Consensus 243 ----------------------------------------------------------~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 243 ----------------------------------------------------------WPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp ----------------------------------------------------------CTTCCEEECTTCCCCHHHHHHH
T ss_pred ----------------------------------------------------------CCCcCEEECCCCCCchhhHHHH
Confidence 34566666666666554 3
Q ss_pred Chhhhc--cCCCCeeeCCCCcCcc----CCCccc-cCCCCCCeEeCCCCcccccC
Q 005619 512 PSEICD--LQNIHGLNLSHNFLSG----SIPESF-SNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 512 p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~ 559 (688)
|..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 444533 6777777777777776 366555 55677777777777777655
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.3e-23 Score=212.85 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=96.2
Q ss_pred CCCEEEcccCcCCCcCcccccCC--CCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCC-CchhhhCCcCCcEE
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNL--TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGH-IPSWMGNFSNLYIL 290 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 290 (688)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 3334444 5677777777766655443 34566666666666666543 45555666666666
Q ss_pred EccccccCCCCcccccCCCCCcEEEccCC-cCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCC-cC
Q 005619 291 SMSKNLLEGNIPVQFNNLAILQILDISEN-NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDN-YF 368 (688)
Q Consensus 291 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l 368 (688)
++++|.+++..+..+..+++|++|++++| .+++. .++..+..+++|++|++++| .+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCc
Confidence 66666665555555666666666666666 34432 12333344445555555555 44
Q ss_pred CCc-CchhhhcCC-CccEEeccCC--cCC-CCCchhhcCCCCCCEEEccCCc
Q 005619 369 FGR-IPHQINEHS-NLRALLLRGN--YLQ-GPIPHQLCQLRKLSIMDLSHNR 415 (688)
Q Consensus 369 ~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~ls~n~ 415 (688)
++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 332 334444555 5555555555 232 2234444455555555555555
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.8e-22 Score=193.86 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=99.2
Q ss_pred CCcEEEccCCcCcccccccc-ccCccceEeeecCc-cccCCchhccCCCCccEEeCcC-CcCCCcCchhhhcCCCccEEe
Q 005619 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNA-LGGSIPNTIFRGSALETLDLRD-NYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 386 (688)
+|++|++++|++++..+..+ .+++|++|++++|. +++..+..+..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444333 44555555555554 4433333455555555555555 555444444555555555555
Q ss_pred ccCCcCCCCCchhhcCCCCCC---EEEccCC-cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceec
Q 005619 387 LRGNYLQGPIPHQLCQLRKLS---IMDLSHN-RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 462 (688)
+++|++++ +|. +..+++|+ .|++++| .+++..+..+.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------------------------------------ 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------------------------------------ 153 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------------------------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------------------------------------
Confidence 55555553 333 45555555 5555555 554322222211
Q ss_pred ccCCCCCCCCCcceEEEeeecccccccccccccccc-EEEccCCcccccCChhhhccCCCCeeeCCCCc-CccCCCcccc
Q 005619 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA-GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF-LSGSIPESFS 540 (688)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 540 (688)
++.|+ .|++++|+++...+..|.. ++|+.|+|++|+ +++..+..|+
T Consensus 154 -------------------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 154 -------------------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp -------------------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred -------------------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhh
Confidence 34455 5555555555333333333 556666666663 6555555566
Q ss_pred CC-CCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCC
Q 005619 541 NL-KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 541 ~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 577 (688)
++ ++|+.||+++|++++..+. .+++|+.|+++++
T Consensus 202 ~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 66 6666666666666633222 4455666666554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=202.52 Aligned_cols=223 Identities=23% Similarity=0.272 Sum_probs=173.0
Q ss_pred CCcEEEccCCcCcccccc----ccccCccceEeeecCccccCCchhc--cCCCCccEEeCcCCcCCCcCc----hhhhcC
Q 005619 310 ILQILDISENNLSGSMIS----TLNLSSVEHLYLQSNALGGSIPNTI--FRGSALETLDLRDNYFFGRIP----HQINEH 379 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l 379 (688)
.++.+.+.++.++..... ....++|++|++++|.+.+..|..+ ..+++|++|++++|++.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777777766542221 1245679999999999988888877 788999999999999987554 344579
Q ss_pred CCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc--chhhhhhhhcccCCcccccceeEEecccccccccccc
Q 005619 380 SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI--PACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYN 457 (688)
Q Consensus 380 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (688)
++|++|++++|++.+..+..+..+++|++|++++|++.+.. +....
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------------------- 192 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC-------------------------------- 192 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC--------------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh--------------------------------
Confidence 99999999999999888899999999999999999986421 11000
Q ss_pred cceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC--Ch-hhhccCCCCeeeCCCCcCccC
Q 005619 458 STVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI--PS-EICDLQNIHGLNLSHNFLSGS 534 (688)
Q Consensus 458 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~--p~-~~~~l~~L~~L~Ls~N~l~~~ 534 (688)
...+++|++|+|++|+++... +. .++.+++|++|+|++|++++.
T Consensus 193 ---------------------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 193 ---------------------------------PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp ---------------------------------TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred ---------------------------------hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 012678999999999997322 12 357889999999999999998
Q ss_pred CCccccCC---CCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCC
Q 005619 535 IPESFSNL---KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNL 601 (688)
Q Consensus 535 ~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 601 (688)
+|..++.+ ++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....+..+......+|+
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 88888777 69999999999999 6777764 7999999999999973 333455556666666664
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.4e-21 Score=197.25 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=112.0
Q ss_pred CCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEec
Q 005619 308 LAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLL 387 (688)
Q Consensus 308 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 387 (688)
+++|++|++++|.+.... ....+++|++|++++|.+++ ++. +..+++|++|++++|++.+. + .+..+++|+.|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 344444444444444321 11244455555555555542 222 55556666666666665442 2 4566666666666
Q ss_pred cCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 388 RGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 388 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
++|++++. + .+..+++|+.|++++|.+++..+ +.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------------ 148 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA------------------------------------------ 148 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG------------------------------------------
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc------------------------------------------
Confidence 66666643 2 26666666666666666653222 11
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCe
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 547 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 547 (688)
.++.|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.
T Consensus 149 -------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 149 -------------------------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE 199 (308)
T ss_dssp -------------------------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred -------------------------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence 14556667777777664333 6677777777777777775433 667777777
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 548 LDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 548 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
|+|++|++++..| +..+++|++|++++|++++
T Consensus 200 L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777777775543 6777777777777777765
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6e-21 Score=186.81 Aligned_cols=180 Identities=22% Similarity=0.189 Sum_probs=147.4
Q ss_pred CCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccC
Q 005619 310 ILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRG 389 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 389 (688)
..++++++++.++..+... .++++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4566777777666544432 25677888888888777777788888899999999998888787888899999999999
Q ss_pred CcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCC
Q 005619 390 NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469 (688)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 469 (688)
|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------- 129 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------- 129 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence 9998777788888999999999999988544433322
Q ss_pred CCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEe
Q 005619 470 RSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549 (688)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 549 (688)
++.|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 130 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 130 ------------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 56789999999999988887899999999999999999988888999999999999
Q ss_pred CCCCccccc
Q 005619 550 LSHNKLNGQ 558 (688)
Q Consensus 550 Ls~N~l~~~ 558 (688)
|++|++++.
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 999999876
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.3e-20 Score=188.29 Aligned_cols=191 Identities=23% Similarity=0.353 Sum_probs=90.4
Q ss_pred CcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEcc
Q 005619 68 TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147 (688)
Q Consensus 68 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls 147 (688)
+++|++|++++|.+..+| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++.+....+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 445556666666665555 3555666666666666665 3333 34556666666666555544322334444444444
Q ss_pred CCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCC
Q 005619 148 SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227 (688)
Q Consensus 148 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 227 (688)
+|+++ .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++.
T Consensus 116 ~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--------------------- 168 (308)
T 1h6u_A 116 STQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--------------------- 168 (308)
T ss_dssp TSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG---------------------
T ss_pred CCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh---------------------
Confidence 44444 2222 1 234444555554444443221 4444444444444444431 221
Q ss_pred cCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC
Q 005619 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 298 (688)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred -----hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 3344444444444444442221 3444455555555555543321 445555555555555554
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=8.3e-21 Score=184.42 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCCEEEcccCcCCCcCcccccCCCCCCEEeccCCc-CCCcccccccCCCCCCEEEccC-CcCCCCCchhhhCCcCCcEEE
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNH-FSGKIKDGLLRSSELMVLDISN-NHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 291 (688)
+++.|++++|.+++..+..|.++++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444444333344444444444444443 4433333444455555555554 455444444455555555555
Q ss_pred ccccccCCCCcccccCCCCCc---EEEccCC-cCcccccccc-ccCccc-eEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 292 MSKNLLEGNIPVQFNNLAILQ---ILDISEN-NLSGSMISTL-NLSSVE-HLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~~~~~-~~~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+ .+++|+ +|++++|.++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 55555543 332 44455554 5666655 5555544444 555666 6666666665 4444333336677777777
Q ss_pred Cc-CCCcCchhhhcC-CCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 366 NY-FFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 366 n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 665555667777 7777777777777743332 4667777777665
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=6.6e-21 Score=182.00 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=130.4
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc-hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
+.+++++|.++. +|..+. ..++.|++++|++++..+ ..|..+++|+.|++++|++++..|..+.+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 477777777744 454442 356788888888876644 45778888888888888887554444432
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
+++|+.|+|++|.+++..|..|..
T Consensus 80 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 80 --------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTT
T ss_pred --------------------------------------------------------CCCCCEEECCCCccCccCHhHhcC
Confidence 567888999999998888888999
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 586 (688)
+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|+++|.|+..
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999999999999999999999999999999999999999999999999999999999999999998743
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.2e-20 Score=180.14 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=130.1
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~ 438 (688)
+.++++++.++. +|..+. ++++.|++++|++++..+..|..+++|+.|++++|++++..|..+.+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 567777777743 444433 57888888888888766777888888888888888887655655432
Q ss_pred cceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhcc
Q 005619 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDL 518 (688)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 518 (688)
+++|+.|+|++|++++..+..|..+
T Consensus 79 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 79 -------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp -------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCC
Confidence 5678888888888887777778999
Q ss_pred CCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 519 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 519 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+.
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 9999999999999999999999999999999999999998888899999999999999999998753
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=6e-20 Score=176.59 Aligned_cols=185 Identities=22% Similarity=0.253 Sum_probs=139.8
Q ss_pred ccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
.+.++.+++.+ +.+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..
T Consensus 21 ~~~v~c~~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 45677777776 34454332 67888888888888777778888888888888888886333322221
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
+++|+.|+|++|++++..+..|..
T Consensus 87 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 87 --------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCCcCEEECCCCcCCccChhHhCc
Confidence 567888888888888777888899
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCc---
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDE--- 594 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~--- 594 (688)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.|+....+..|..
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~ 189 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT 189 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc
Confidence 999999999999999 7888999999999999999999988888899999999999999999999875433332221
Q ss_pred ---cccCCCCCCCCCCCCCCCCCc
Q 005619 595 ---SSYRGNLHLCGPPINKSCTNL 615 (688)
Q Consensus 595 ---~~~~~n~~l~~~p~~~~C~~~ 615 (688)
..+.|++ +..+....|..+
T Consensus 190 ~~~~~~~g~~--v~~~~~~~C~~~ 211 (229)
T 3e6j_A 190 SIAMRWDGKA--VNDPDSAKCAGT 211 (229)
T ss_dssp GGEEEESSSE--EECTTCSBBTTT
T ss_pred cccccccCcc--cCCCCcCccCCC
Confidence 1223332 345556677654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.8e-19 Score=185.55 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=148.9
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCE-EEc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEW-LQL 220 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L 220 (688)
++++.++++++ .+|..+ .+++++|++++|+++.+.+.+|.++++|++|+|++|.+.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666777776 667654 2467777777777775544567777777777777777655666666666665554 334
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccc-cccCC
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK-NLLEG 299 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ 299 (688)
.+|+++...+..|..+++|++|++++|.+....+ ..+....++..+++.+ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------------------------CTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCc------------------------hhhcccchhhhhhhcccccccc
Confidence 4455555445555555555555555555543333 3333334444555533 33443
Q ss_pred CCcccccCCC-CCcEEEccCCcCccccccccccCccceEeeec-CccccCCc-hhccCCCCccEEeCcCCcCCCcCchhh
Q 005619 300 NIPVQFNNLA-ILQILDISENNLSGSMISTLNLSSVEHLYLQS-NALGGSIP-NTIFRGSALETLDLRDNYFFGRIPHQI 376 (688)
Q Consensus 300 ~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~ 376 (688)
..+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++ .+| ..|..+++|++|++++|+++...+..+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 3344454443 56777788887777766666667788888875 5555 554 456778889999999998866544444
Q ss_pred hcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 377 NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 377 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 223 ---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 456666655554444566 3778899999998754
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.2e-19 Score=196.27 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
+++.|++++|.+++ +|..+ +++|++|++++|.++..+ ..+++|++|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 56666666666654 33333 245666666666555333 124455555555555553 443 322 455555555
Q ss_pred CcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 366 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|+++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 55544 332 34455555555555543 332 3445555555555544
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.5e-19 Score=182.49 Aligned_cols=224 Identities=18% Similarity=0.126 Sum_probs=167.6
Q ss_pred CEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCccc-ccccCCCCCCE-EEc
Q 005619 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK-DGLLRSSELMV-LDI 268 (688)
Q Consensus 191 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~-L~L 268 (688)
++++.+++.++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666543 2467777777777776555667778888888888887755444 45677777765 566
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC-CcCcccccccc-cc-CccceEeeecCccc
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE-NNLSGSMISTL-NL-SSVEHLYLQSNALG 345 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~-~~-~~L~~L~L~~n~l~ 345 (688)
+.|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......+ .+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888877788899999999999999999877777777788899999976 56776666555 43 46899999999998
Q ss_pred cCCchhccCCCCccEEeCcC-CcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccch
Q 005619 346 GSIPNTIFRGSALETLDLRD-NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422 (688)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 422 (688)
.++...+...+|+++++++ |.++...+..|..+++|+.|++++|+++...+.. +.+|+.|.+.++.--..+|.
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 6666666778899999986 6665554567899999999999999999654444 45677777666544446663
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=4.9e-20 Score=190.49 Aligned_cols=180 Identities=24% Similarity=0.209 Sum_probs=142.8
Q ss_pred ceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhh-cCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccC
Q 005619 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQIN-EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 335 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 413 (688)
+.++++++.++ .+|..+. +.++.|++++|++++..+..+. .+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46667777766 4565443 4578888888888777777776 888899999999988877777888889999999999
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|++++..+..+.+
T Consensus 98 N~l~~~~~~~~~~------------------------------------------------------------------- 110 (361)
T 2xot_A 98 NHLHTLDEFLFSD------------------------------------------------------------------- 110 (361)
T ss_dssp SCCCEECTTTTTT-------------------------------------------------------------------
T ss_pred CcCCcCCHHHhCC-------------------------------------------------------------------
Confidence 9887544433322
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccc---cCCCCCCeEeCCCCcccccCCcCCCCCCC--
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF---SNLKMIESLDLSHNKLNGQIPPQLTELHS-- 568 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-- 568 (688)
+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|++++..+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 5678889999999998888999999999999999999996555555 67899999999999999776677888877
Q ss_pred CCEEecCCCcCccCCC
Q 005619 569 LSKFDVSYNDLSGPIP 584 (688)
Q Consensus 569 L~~L~ls~N~l~~~~p 584 (688)
++.|++++|++.|.|.
T Consensus 191 l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 191 KNGLYLHNNPLECDCK 206 (361)
T ss_dssp HTTEECCSSCEECCHH
T ss_pred cceEEecCCCccCCcC
Confidence 4889999999998875
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.3e-18 Score=165.00 Aligned_cols=161 Identities=20% Similarity=0.195 Sum_probs=95.2
Q ss_pred CcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEE
Q 005619 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ 219 (688)
Q Consensus 140 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 219 (688)
+|++|++++|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 4555555555554 344433345666666666666666554455566666666666666665 44444455666666666
Q ss_pred cccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCC
Q 005619 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 220 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 66666665555555666666666666666665555555666666666666665542 34456666666666666
Q ss_pred CCcccccCCC
Q 005619 300 NIPVQFNNLA 309 (688)
Q Consensus 300 ~~~~~l~~l~ 309 (688)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6666555544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=165.39 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=68.7
Q ss_pred CCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEE
Q 005619 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 212 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 291 (688)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 33333333333333333233334444444444444444433333344455555555555555544444455555555555
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCC
Q 005619 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG 355 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 355 (688)
+++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.++|.+|..++.+
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 55555554444445555666666666654443 23455566666666666665554443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=173.42 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=111.5
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 3445555555555554 222 35556666777777766655433 6666777777777777664 22 36677777777
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|++++. + .+.
T Consensus 118 ~L~~n~i~~~-~-~l~---------------------------------------------------------------- 131 (291)
T 1h6t_A 118 SLEHNGISDI-N-GLV---------------------------------------------------------------- 131 (291)
T ss_dssp ECTTSCCCCC-G-GGG----------------------------------------------------------------
T ss_pred ECCCCcCCCC-h-hhc----------------------------------------------------------------
Confidence 7777776531 1 111
Q ss_pred cccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
.+++|+.|++++|++++. ..+..+++|+.|+|++|++++..| ++.+++|+.|++++|++++. | .+..+++|
T Consensus 132 ---~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L 202 (291)
T 1h6t_A 132 ---HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNL 202 (291)
T ss_dssp ---GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTC
T ss_pred ---CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCC
Confidence 145677777777777754 567777788888888888876544 77778888888888887754 3 37777888
Q ss_pred CEEecCCCcCcc
Q 005619 570 SKFDVSYNDLSG 581 (688)
Q Consensus 570 ~~L~ls~N~l~~ 581 (688)
+.|++++|+++.
T Consensus 203 ~~L~l~~n~i~~ 214 (291)
T 1h6t_A 203 DVLELFSQECLN 214 (291)
T ss_dssp SEEEEEEEEEEC
T ss_pred CEEECcCCcccC
Confidence 888888887765
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.2e-18 Score=186.37 Aligned_cols=188 Identities=22% Similarity=0.274 Sum_probs=107.4
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
+++.|++++|.+++ +|... .++|+.|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 66666666666653 55433 2456666666665552 22 234455555555555553 333 322 4555555
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCC
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSI 348 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 348 (688)
++|.+++ +|. .+++|+.|++++|.+++.+. .+++|++|++++|.+++ +
T Consensus 128 s~N~l~~-lp~---------------------------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 128 DNNQLTM-LPE---------------------------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp CSSCCSC-CCC---------------------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCCcCCC-CCC---------------------------cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-c
Confidence 5554443 222 34455555555555554322 34555666666666553 4
Q ss_pred chhccCCCCccEEeCcCCcCCCcCchhhhcCCCc-------cEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc
Q 005619 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL-------RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421 (688)
Q Consensus 349 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 421 (688)
|. +. ++|+.|++++|+++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 33 56677777777665 3444 333 55 88888888887 467767778888888888888888888
Q ss_pred hhhhhhh
Q 005619 422 ACITNLL 428 (688)
Q Consensus 422 ~~l~~l~ 428 (688)
..+.++.
T Consensus 248 ~~l~~l~ 254 (571)
T 3cvr_A 248 ESLSQQT 254 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877654
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=165.28 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=129.4
Q ss_pred ceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccC
Q 005619 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 335 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 413 (688)
+++++++|.++ .+|..+. ..+++|++++|++++..+ ..|..+++|+.|++++|++++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 4565443 356888888888877644 4578889999999999999887777899999999999999
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|++++..|..+..
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------------------------- 103 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------------------------- 103 (220)
T ss_dssp SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred CccCccCHhHhcC-------------------------------------------------------------------
Confidence 9998665554432
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 5678999999999998889999999999999999999999889999999999999999999987543
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.2e-18 Score=162.37 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=95.4
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 56788899999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCccCCCCCcccCCcCccccCCCCCCCCCCC
Q 005619 574 VSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPI 608 (688)
Q Consensus 574 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p~ 608 (688)
+++|+++|.++.......+....+.++...|+.|.
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99999999987532222222233444545565543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.7e-18 Score=163.87 Aligned_cols=154 Identities=22% Similarity=0.248 Sum_probs=128.3
Q ss_pred ceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 335 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
+.++++++.++ .+|..+. ++++.|++++|++.+..+..|..+++|+.|+|++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666677766 5565443 57889999999988777778888999999999999998888889999999999999999
Q ss_pred cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccc
Q 005619 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494 (688)
Q Consensus 415 ~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (688)
++++..+..+.. +
T Consensus 91 ~l~~l~~~~f~~-------------------------------------------------------------------l 103 (220)
T 2v9t_B 91 KITELPKSLFEG-------------------------------------------------------------------L 103 (220)
T ss_dssp CCCCCCTTTTTT-------------------------------------------------------------------C
T ss_pred cCCccCHhHccC-------------------------------------------------------------------C
Confidence 988433322221 5
Q ss_pred ccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccccc
Q 005619 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6789999999999999899999999999999999999988888899999999999999999853
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.1e-18 Score=168.44 Aligned_cols=147 Identities=25% Similarity=0.379 Sum_probs=66.2
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|++++|.+++. +.+..+++|+.|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 4444444444444443222 444444444444444444 2221 33444444444444444431 234444445555
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 5554444432 234444555555555555543322 44455555555555554432 1 2444455555555555444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=8.8e-18 Score=183.86 Aligned_cols=166 Identities=22% Similarity=0.261 Sum_probs=81.7
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334444444443222 33455666666666666532 2 35556666666666666654333 55566666666666
Q ss_pred CcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCch
Q 005619 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398 (688)
Q Consensus 319 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 398 (688)
|.+.+.. ....+++|++|+|++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 6555422 22244555555555555542 2 2344444555555555544332 334444455555555554443333
Q ss_pred hhcCCCCCCEEEccCCcCc
Q 005619 399 QLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 399 ~~~~l~~L~~L~ls~n~l~ 417 (688)
+..+++|+.|+|++|+++
T Consensus 171 -l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp -GTTCTTCCEEECCSSCCC
T ss_pred -hccCCCCCEEECcCCCCC
Confidence 444444455555444444
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=160.14 Aligned_cols=157 Identities=25% Similarity=0.261 Sum_probs=129.5
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEcc
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 412 (688)
+-+.++.+++.++ .+|..+. ++|++|++++|++++..|..+..+++|+.|+|++|++.+..+..|..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3456777777776 5665443 789999999999988888888899999999999999987666778889999999999
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|++++..+..+..
T Consensus 97 ~N~l~~l~~~~~~~------------------------------------------------------------------ 110 (229)
T 3e6j_A 97 TNQLTVLPSAVFDR------------------------------------------------------------------ 110 (229)
T ss_dssp SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcCCccChhHhCc------------------------------------------------------------------
Confidence 99988544433322
Q ss_pred ccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus 111 -l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 111 -LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 567899999999998 778889999999999999999998777889999999999999999987543
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.2e-18 Score=158.54 Aligned_cols=154 Identities=15% Similarity=0.226 Sum_probs=109.2
Q ss_pred cCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhccc
Q 005619 353 FRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432 (688)
Q Consensus 353 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~ 432 (688)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 34456777777777765 334 5667777777777777654 2335677778888888888776544443322
Q ss_pred CCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC
Q 005619 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512 (688)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 512 (688)
+++|+.|++++|++++..|
T Consensus 111 -------------------------------------------------------------l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 111 -------------------------------------------------------------LTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSBCBGGGH
T ss_pred -------------------------------------------------------------CCCCCEEEecCCccCcHhH
Confidence 4667788888888887777
Q ss_pred hhhhccCCCCeeeCCCCc-CccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 513 SEICDLQNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
..++.+++|+.|+|++|. ++ .+| .++.+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 888888888888888887 55 455 588888888888888888863 3 67888889999998888754
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2e-20 Score=203.55 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=29.0
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCC-CccccCCCCCCeEeCCCCccccc
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
+|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|++++.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 34444444444443 23 4444455555555555554443 44455555555555555555443
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.3e-17 Score=180.49 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=89.9
Q ss_pred CCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 94 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 94 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
+..++++.+.+.+..+. ..+++|+.|++++|.+..++....+++|+.|+|++|.+++ ++. + ..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l-~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP-L-TNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG-G-GGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh-h-ccCCCCCEEECcC
Confidence 44455666666643332 3566777777777776665433455555555555555552 222 2 2455555555555
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcc
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKI 253 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 253 (688)
|.+.+. +.+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 555431 234555555555555555442 21 133444455555554444432 33444444444444444444332
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 298 (688)
+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 2 34444444444444444422 12334444444444444433
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.8e-18 Score=165.76 Aligned_cols=171 Identities=20% Similarity=0.269 Sum_probs=131.1
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+.+++.++++++.+++ ++ .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 35566677777777763 33 45667788888888888754 34 67788888888888888886544 7888888888
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|++++ +|..
T Consensus 91 ~L~~N~l~~-l~~~------------------------------------------------------------------ 103 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI------------------------------------------------------------------ 103 (263)
T ss_dssp ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred ECCCCccCC-cCcc------------------------------------------------------------------
Confidence 888888864 2210
Q ss_pred cccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
. .+.|+.|++++|++++. +.+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..+++|
T Consensus 104 --~-~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 104 --P-SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp --C-CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred --c-cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 0 14678889999988864 3588899999999999999864 3 688889999999999999876 678889999
Q ss_pred CEEecCCCcCccC
Q 005619 570 SKFDVSYNDLSGP 582 (688)
Q Consensus 570 ~~L~ls~N~l~~~ 582 (688)
++|++++|++++.
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 9999999998875
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4.2e-20 Score=201.09 Aligned_cols=204 Identities=19% Similarity=0.195 Sum_probs=155.4
Q ss_pred cCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc-------------cCCCCcccccCCCCCcEEE-ccCCcCcc
Q 005619 258 LRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL-------------LEGNIPVQFNNLAILQILD-ISENNLSG 323 (688)
Q Consensus 258 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~ 323 (688)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 44667777777777776 567777777777777776553 3445566666777777776 555432
Q ss_pred ccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCC
Q 005619 324 SMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQL 403 (688)
Q Consensus 324 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 403 (688)
..|+.+.+++|.++. ++. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+
T Consensus 423 --------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 345566666666653 222 258999999999976 565 999999999999999999 788899999
Q ss_pred CCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeec
Q 005619 404 RKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTK 483 (688)
Q Consensus 404 ~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 483 (688)
++|+.|++++|++++ +| .+.+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~--------------------------------------------------------- 506 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVAN--------------------------------------------------------- 506 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTT---------------------------------------------------------
T ss_pred CCCCEEECCCCCCCC-Cc-ccCC---------------------------------------------------------
Confidence 999999999999985 55 3332
Q ss_pred cccccccccccccccEEEccCCcccccC-ChhhhccCCCCeeeCCCCcCccCCCcc---ccCCCCCCeEeC
Q 005619 484 NRYESYKGVILDYMAGLDLSSNKLTGDI-PSEICDLQNIHGLNLSHNFLSGSIPES---FSNLKMIESLDL 550 (688)
Q Consensus 484 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L 550 (688)
+++|+.|+|++|++++.. |..|+.+++|+.|+|++|.+++.+|.. +..+++|+.||+
T Consensus 507 ----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 ----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 678999999999999887 999999999999999999999776532 344788888875
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2e-17 Score=170.85 Aligned_cols=176 Identities=21% Similarity=0.232 Sum_probs=91.1
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhh-cCCCCCEEEccCCcCccccCchhhcCCCCCCEEEc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG-KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 220 (688)
+.+++++++++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+. .++...+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 34555555555 4554332 3455566666655554444444 5555666666655555 444444455555555555
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhh---hCCcCCcEEEcccccc
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM---GNFSNLYILSMSKNLL 297 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l 297 (688)
++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 5555554444455555555555555555555445555555555555555555554333333 3355555555555555
Q ss_pred CCCCcccccCCCC--CcEEEccCCcCc
Q 005619 298 EGNIPVQFNNLAI--LQILDISENNLS 322 (688)
Q Consensus 298 ~~~~~~~l~~l~~--L~~L~Ls~n~l~ 322 (688)
++..+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5444444444443 244555555443
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.3e-17 Score=153.61 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=102.2
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455666666666665 444 45666667777777775532 2356677777777777777776666677777777777
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|++++..|..+..
T Consensus 118 ~Ls~n~i~~~~~~~l~~--------------------------------------------------------------- 134 (197)
T 4ezg_A 118 DISHSAHDDSILTKINT--------------------------------------------------------------- 134 (197)
T ss_dssp ECCSSBCBGGGHHHHTT---------------------------------------------------------------
T ss_pred EecCCccCcHhHHHHhh---------------------------------------------------------------
Confidence 77777777655554432
Q ss_pred cccccccccEEEccCCc-ccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 490 KGVILDYMAGLDLSSNK-LTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
++.|+.|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 135 ----l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 135 ----LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ----CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ----CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 4567777777777 44 444 57788888888888888885 33 67788888888888888764
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=4e-18 Score=173.85 Aligned_cols=288 Identities=14% Similarity=0.078 Sum_probs=141.2
Q ss_pred CCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC-CCCCcCEEEccCCCCCCCCChhhhhc-------
Q 005619 91 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS-AQHGLISLDISSNNFTGKLPQNMGIV------- 162 (688)
Q Consensus 91 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~------- 162 (688)
+.++++|.++++ +...-...+...+++|+.|||++|++....... ..+.++.+.+..| .+|...|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 446777777764 221111122222677888888888777322211 2222344444444 455555555
Q ss_pred -CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc----CCCcCcccccCCC
Q 005619 163 -LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN----FDGQIFPNYVNLT 237 (688)
Q Consensus 163 -l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~ 237 (688)
+++|+++++.+ .++.+.+.+|.++++|+.+++++|.+. .++..+|..+.++..+....+. ........|.++.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 67777777766 666555566666777777777666665 5666666665555555444321 1111222333444
Q ss_pred CCC-EEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEc
Q 005619 238 RLL-FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDI 316 (688)
Q Consensus 238 ~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 316 (688)
.|+ .+.+.... .++..+. .......+++.+.+.++-...........+++|+.+++
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~--------------------~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIM--------------------KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHH--------------------HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred ccceeEEecCCC---cHHHHHh--------------------hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence 444 22222111 0111000 00001223333333322110000000112445555555
Q ss_pred cCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCcc-EEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC
Q 005619 317 SENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALE-TLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394 (688)
Q Consensus 317 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (688)
++|.++......| ++++|+.+++.+| ++...+..|..|++|+ .+++.+ .++...+.+|.+|++|+.+++++|+++.
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 5555554444444 4555555555554 4434444555666666 666665 4544555666666666666666666665
Q ss_pred CCchhhcCCCCCCEEE
Q 005619 395 PIPHQLCQLRKLSIMD 410 (688)
Q Consensus 395 ~~~~~~~~l~~L~~L~ 410 (688)
+.+.+|.+|++|+.++
T Consensus 312 I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTCTTCCCCEEE
T ss_pred cchhhhcCCcchhhhc
Confidence 5566666666666664
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=153.33 Aligned_cols=92 Identities=23% Similarity=0.262 Sum_probs=84.1
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..+..|..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 46788888888888888888899999999999999999998888999999999999999999988777899999999999
Q ss_pred cCCCcCccCCCC
Q 005619 574 VSYNDLSGPIPD 585 (688)
Q Consensus 574 ls~N~l~~~~p~ 585 (688)
+++|++.|.|+.
T Consensus 133 L~~N~~~C~c~l 144 (193)
T 2wfh_A 133 IGANPLYCDCNM 144 (193)
T ss_dssp CCSSCEECSGGG
T ss_pred eCCCCeecCCcC
Confidence 999999998853
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.7e-17 Score=154.63 Aligned_cols=156 Identities=25% Similarity=0.291 Sum_probs=104.6
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCch-hhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
+.+++++|.+ +.+|..+. .++++|++++|++++..+. .+..+++|++|++++|++++..|..+.+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 5666776666 34444333 2677777777777655543 3677777777777777777655554432
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
+++|+.|+|++|++++..|..|..
T Consensus 77 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 77 --------------------------------------------------------ASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp --------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTT
T ss_pred --------------------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence 456777788888887777777888
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
+++|+.|+|++|++++.+|..|+.+++|++|+|++|.+++..+... -...++...+..+...|..|.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh
Confidence 8888888888888888888888888888888888888887654210 001122223445556665554
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.5e-17 Score=186.93 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=105.4
Q ss_pred EccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCC
Q 005619 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370 (688)
Q Consensus 291 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 370 (688)
++..|.+. ..+..+..++.|+.|+|++|.+.......+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 33445444 5577788889999999999998876666668899999999999998 88888999999999999999997
Q ss_pred cCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhh
Q 005619 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427 (688)
Q Consensus 371 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l 427 (688)
.+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+...
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 67889999999999999999997 678889999999999999999999888877653
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.5e-17 Score=166.06 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=40.4
Q ss_pred ccccc-EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeC
Q 005619 494 LDYMA-GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 550 (688)
Q Consensus 494 l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 550 (688)
+..|+ .+++.+ +++.+.+.+|.++++|+.|++++|+++.+.+.+|.++++|+.+..
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 34555 666665 555566677888888888888888888777778888888887753
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.5e-17 Score=186.97 Aligned_cols=191 Identities=22% Similarity=0.200 Sum_probs=122.9
Q ss_pred EccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC
Q 005619 315 DISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 315 ~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 393 (688)
+++.|.+. ..+..+ .++.|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..++.+++|+.|+|++|+++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33444444 233334 7889999999999998 78888889999999999999997 78888999999999999999999
Q ss_pred CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCC
Q 005619 394 GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473 (688)
Q Consensus 394 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (688)
.+|..+..+++|++|+|++|.++ .+|..+.+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~----------------------------------------------- 314 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN----------------------------------------------- 314 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS-----------------------------------------------
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhc-----------------------------------------------
Confidence 77989999999999999999996 66765533
Q ss_pred cceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCC-CCeeeCCCCcCccCCCccccCCCCCCeEeCCC
Q 005619 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN-IHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552 (688)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 552 (688)
+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++
T Consensus 315 --------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~ 368 (727)
T 4b8c_D 315 --------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINT 368 (727)
T ss_dssp --------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred --------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeec
Confidence 567899999999999999988876532 235889999999888864 55677777
Q ss_pred C--------cccccCCcCCCCCCCCCEEecCCCcCccCC
Q 005619 553 N--------KLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583 (688)
Q Consensus 553 N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 583 (688)
| .+.+..+..+..+..+....+++|-+.+..
T Consensus 369 n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 369 DGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp ---------------------------------CCCGGG
T ss_pred ccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 7 455555556677777888889999886433
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=9.2e-17 Score=157.69 Aligned_cols=169 Identities=21% Similarity=0.282 Sum_probs=113.8
Q ss_pred CCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEc
Q 005619 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDI 316 (688)
Q Consensus 237 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 316 (688)
.++..++++.+.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444555555554322 34455666666666666653 23 45666666666666666664433 666677777777
Q ss_pred cCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC
Q 005619 317 SENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI 396 (688)
Q Consensus 317 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 396 (688)
++|++++..... . ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 777666543322 2 677777777777774 33 477788888888888888664 3 678888889999999888865
Q ss_pred chhhcCCCCCCEEEccCCcCccc
Q 005619 397 PHQLCQLRKLSIMDLSHNRLNGS 419 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l~~~ 419 (688)
..+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 6678888899999999888754
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=3.1e-15 Score=155.50 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=119.4
Q ss_pred CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCC
Q 005619 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLE 216 (688)
Q Consensus 137 ~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 216 (688)
.|.+|+.++++.|.++ .++...+. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +. .++..+|.+ .+|+
T Consensus 178 ~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 178 YCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGIT 251 (401)
T ss_dssp TCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCS
T ss_pred CcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCcc
Confidence 4455555555555555 55555553 456666666533 44455556666666666666553 33 455555555 5666
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCC-----CcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEE
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS-----GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 291 (688)
.+.+. +.++.....+|.++++|+.+++.++.+. .....+|..+++|+.+++.. .++.....+|.+|++|+.+.
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEE
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEE
Confidence 66663 3344444556666666666666665543 34455667777777777763 35555566677777777777
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-cc-CccceEeeecCcc
Q 005619 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NL-SSVEHLYLQSNAL 344 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~-~~L~~L~L~~n~l 344 (688)
+..+ ++.+...+|.++ +|+.+++++|.+.......+ ++ .+++.|++..+.+
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7544 555556677777 77777777777666555555 44 3667777766544
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=3.3e-15 Score=155.33 Aligned_cols=263 Identities=11% Similarity=0.132 Sum_probs=171.7
Q ss_pred CCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCC
Q 005619 17 LTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLK 95 (688)
Q Consensus 17 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~ 95 (688)
+..++.+.+..+ ++ .++...|.++ +|+.+++..+ +..++..+|.++ +|+.+.+.. .+..++ .+|.+|++|+
T Consensus 112 ~~~l~~i~ip~~-i~--~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK--SIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT-CC--EECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCc-cC--EehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 455666666543 22 2444455554 5666666544 445555556653 466666664 455553 4566666666
Q ss_pred EEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC--CCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 96 YLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ--LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
.+++++|+++ .++...|. +.+|+.+.+..+ ++.+. ....+++|+.+++..+ ++ .++...|.. .+|+.+.+.
T Consensus 184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-
T ss_pred eeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-
Confidence 6666666666 55555553 466666666533 33322 2225566677776653 44 566666654 678888884
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCcCc----cccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcC
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFA----GELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHF 249 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 249 (688)
+.++.+...+|.++++|+.+++.++.+. ..++...|.+|++|+.+++.+ .++.....+|.++++|+.+.+..+ +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 4566566777888888888888776553 147777788888888888884 466666778888888888888654 6
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCCchhhhCCc-CCcEEEcccccc
Q 005619 250 SGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFS-NLYILSMSKNLL 297 (688)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 297 (688)
+.....+|..+ +|+.+++++|......+..|..++ +++.|.+..+.+
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 65667778888 899999988887766666777774 678888877654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.6e-16 Score=141.61 Aligned_cols=94 Identities=23% Similarity=0.235 Sum_probs=81.7
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
++.|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45677788888888767777788999999999999999988888889999999999999999987777789999999999
Q ss_pred cCCCcCccCCCCCc
Q 005619 574 VSYNDLSGPIPDKE 587 (688)
Q Consensus 574 ls~N~l~~~~p~~~ 587 (688)
+++|++.|.+|...
T Consensus 131 l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 131 LHTNPWDCSCPRID 144 (177)
T ss_dssp CCSSCBCCCHHHHH
T ss_pred ecCCCeeccCccHH
Confidence 99999999887543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.4e-16 Score=140.80 Aligned_cols=88 Identities=26% Similarity=0.272 Sum_probs=59.2
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCC-CccccCCCCCCeEeCCCCcccccCC---cCCCCCCCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL 569 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 569 (688)
+++|+.|++++|++++.+|..+..+++|+.|+|++|.+++.. +..++.+++|+.|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 455666666666666556666666777777777777777532 2567777777777777777775544 366777777
Q ss_pred CEEecCCCcCcc
Q 005619 570 SKFDVSYNDLSG 581 (688)
Q Consensus 570 ~~L~ls~N~l~~ 581 (688)
++|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 777777776653
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.2e-16 Score=142.01 Aligned_cols=138 Identities=25% Similarity=0.242 Sum_probs=119.7
Q ss_pred CCCccEEeCcCCcCC-CcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccC
Q 005619 355 GSALETLDLRDNYFF-GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVG 433 (688)
Q Consensus 355 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~ 433 (688)
.++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 378999999999997 67888889999999999999999865 77899999999999999999777765543
Q ss_pred CcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC-C
Q 005619 434 SRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI-P 512 (688)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~-p 512 (688)
+++|+.|++++|.+++.. +
T Consensus 94 ------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 113 (168)
T 2ell_A 94 ------------------------------------------------------------LPNLTHLNLSGNKLKDISTL 113 (168)
T ss_dssp ------------------------------------------------------------CTTCCEEECBSSSCCSSGGG
T ss_pred ------------------------------------------------------------CCCCCEEeccCCccCcchhH
Confidence 568999999999999653 3
Q ss_pred hhhhccCCCCeeeCCCCcCccCCC---ccccCCCCCCeEeCCCCcccccCCcC
Q 005619 513 SEICDLQNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+. .+|.+
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 789999999999999999997665 58999999999999999988 44543
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=9.4e-15 Score=152.82 Aligned_cols=327 Identities=10% Similarity=0.073 Sum_probs=167.8
Q ss_pred HhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCC
Q 005619 38 CSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116 (688)
Q Consensus 38 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 116 (688)
.+|.+|++|+.+.++.+ +..++..+|.+|.+|+.+++.++ +..++ ..+..+.+|+.+.+..+ ++ .+....|.++
T Consensus 65 ~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence 34445555555554422 33344444555555555555432 33332 23444445555444432 22 2223333333
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEcc
Q 005619 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVS 196 (688)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 196 (688)
..++..........+......+.+|+.+.+..+. . .++...+..+++|+.+.+..+ ++.+...+|.++..|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3222222222211111122345555555554332 2 455555556666666666554 343445556666666666665
Q ss_pred CCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCC
Q 005619 197 SNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGH 276 (688)
Q Consensus 197 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 276 (688)
.+... +.... ....+|+.+.+... ++......+.++..++.+.+..+... .....+..+..++.+......+.
T Consensus 217 ~~~~~--i~~~~-~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 217 NSLYY--LGDFA-LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp TTCCE--ECTTT-TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCceE--eehhh-cccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 54322 22222 23456666666533 22233445666666776666655332 44455666666666666554332
Q ss_pred CchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCC
Q 005619 277 IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG 355 (688)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 355 (688)
...|..+.+|+.+.+..+ ++.+...+|.+|.+|+.+++..+ ++......| ++.+|+.+.+..+ ++.....+|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 234566677777776544 44455566777777777777543 555555555 6677777777655 443445567777
Q ss_pred CCccEEeCcCCcCCCcCchhhhcCCCccEE
Q 005619 356 SALETLDLRDNYFFGRIPHQINEHSNLRAL 385 (688)
Q Consensus 356 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 385 (688)
.+|+.+++..+ + ..+...|.++++|+.+
T Consensus 366 ~~L~~i~lp~~-~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-L-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-G-GGGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-C-EEhhheecCCCCCcEE
Confidence 77777777654 2 2234566677776654
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=1.1e-14 Score=152.15 Aligned_cols=316 Identities=11% Similarity=0.048 Sum_probs=172.5
Q ss_pred cccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC
Q 005619 57 LLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT 135 (688)
Q Consensus 57 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 135 (688)
++.++..+|.++.+|+.+.+.. .++.|+ .+|.+|.+|+.+++..+ ++ .++...+.++.+|+.+.+..+ +.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~----- 129 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LK----- 129 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CC-----
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-ee-----
Confidence 3556777899999999999975 477774 46788899999999765 55 666777778888887665433 11
Q ss_pred CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCC
Q 005619 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL 215 (688)
Q Consensus 136 ~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 215 (688)
.+....+..+..+ ...... ........+|.++++|+.+.+..+. . .++...|..+.+|
T Consensus 130 ------------------~i~~~aF~~~~~~-~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L 187 (394)
T 4fs7_A 130 ------------------SIGVEAFKGCDFK-EITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKL 187 (394)
T ss_dssp ------------------EECTTTTTTCCCS-EEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTC
T ss_pred ------------------eecceeeeccccc-ccccCc-cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCc
Confidence 1111122122111 111111 1111223345555555555554332 1 3444555555555
Q ss_pred CEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccc
Q 005619 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295 (688)
Q Consensus 216 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 295 (688)
+.+++..+ ++......|.++..|+.+.+..+... +.+.......|+.+.+... ++......+..+..++.+.+..+
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 55555443 33333444555555555555443221 1222233445666655432 22233444556666666666554
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCch
Q 005619 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPH 374 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 374 (688)
... .....|..+..++.+......+. ...+ .+.+|+.+.+..+ ++.....+|..|.+|+.+++.++ ++.....
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 337 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR 337 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH
Confidence 332 44455666666666665544322 1222 5666666666543 33334455666677777777543 4444456
Q ss_pred hhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 375 QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 375 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6777777777777655 54455566777777777776543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.6e-16 Score=139.27 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=54.3
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccC-CCccccCCCCCCeEeCCCCcccccCC---cCCCCCCCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL 569 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 569 (688)
++.|+.|++++|.+++.+|..+..+++|+.|++++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 44566666666666655666666677777777777777653 33667777777777777777776555 456677777
Q ss_pred CEEecC
Q 005619 570 SKFDVS 575 (688)
Q Consensus 570 ~~L~ls 575 (688)
++||++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 777765
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.2e-15 Score=135.81 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=86.9
Q ss_pred CCccEEeCcCCcCC-CcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCC
Q 005619 356 SALETLDLRDNYFF-GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGS 434 (688)
Q Consensus 356 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~ 434 (688)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 45667777777665 45666666677777777777777654 55666777777777777776555544332
Q ss_pred cccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc-CCh
Q 005619 435 RYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD-IPS 513 (688)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~ 513 (688)
+++|+.|++++|.+++. .+.
T Consensus 87 -----------------------------------------------------------l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 87 -----------------------------------------------------------CPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp -----------------------------------------------------------CTTCCEEECTTSCCCSHHHHG
T ss_pred -----------------------------------------------------------CCCCCEEECCCCcCCChHHHH
Confidence 45677777777777653 346
Q ss_pred hhhccCCCCeeeCCCCcCccCCC---ccccCCCCCCeEeCCC
Q 005619 514 EICDLQNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSH 552 (688)
Q Consensus 514 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~ 552 (688)
.++.+++|+.|++++|.+++..+ ..++.+++|+.||+++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 67777888888888888876655 4677788888887763
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=1.3e-15 Score=138.66 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=88.8
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
.+.++.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35688999999999999999999999999999999999988888899999999999999999988888899999999999
Q ss_pred cCCCcCccCCCCCcccC
Q 005619 574 VSYNDLSGPIPDKEQFS 590 (688)
Q Consensus 574 ls~N~l~~~~p~~~~~~ 590 (688)
+++|++.|.++...++.
T Consensus 109 L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 109 LLNNPWDCACSDILYLS 125 (170)
T ss_dssp CCSSCBCTTBGGGHHHH
T ss_pred eCCCCCCCCchhHHHHH
Confidence 99999999987554443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=9.6e-15 Score=135.86 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=101.0
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~ 438 (688)
+.+++++|.++ .+|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 56777777774 3444332 57888888888887 56677888888888888888887554444432
Q ss_pred cceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhcc
Q 005619 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDL 518 (688)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 518 (688)
++.|+.|+|++|++++..|..|..+
T Consensus 77 -------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 77 -------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred -------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCC
Confidence 5678888888888888888889999
Q ss_pred CCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccccc
Q 005619 519 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 519 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9999999999999977777899999999999999998853
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.5e-14 Score=132.84 Aligned_cols=133 Identities=22% Similarity=0.216 Sum_probs=99.6
Q ss_pred ccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
.+.+++++|++.. +|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 4567777777643 34332 357788888888887666666777888888888888877433332221
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
++.|+.|++++|++++..+..|..
T Consensus 75 --------------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 75 --------------------------------------------------------LTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCccCEEECCCCCccccCHHHhhC
Confidence 567888888888888777777888
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999997777778889999999999999987654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.3e-16 Score=149.60 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=109.5
Q ss_pred CCccEEeCcCCcCCCcCch------hhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhh
Q 005619 356 SALETLDLRDNYFFGRIPH------QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429 (688)
Q Consensus 356 ~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 429 (688)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~--- 91 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--- 91 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH---
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc---
Confidence 3445555555555444443 77888888888888888875 55 7777888888888888887 45543322
Q ss_pred cccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc
Q 005619 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG 509 (688)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 509 (688)
++.|+.|++++|++++
T Consensus 92 ----------------------------------------------------------------~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 92 ----------------------------------------------------------------ADTLEELWISYNQIAS 107 (198)
T ss_dssp ----------------------------------------------------------------HHHCSEEEEEEEECCC
T ss_pred ----------------------------------------------------------------CCcCCEEECcCCcCCc
Confidence 3567888888888886
Q ss_pred cCChhhhccCCCCeeeCCCCcCccCCC-ccccCCCCCCeEeCCCCcccccCCcC----------CCCCCCCCEEecCCCc
Q 005619 510 DIPSEICDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ----------LTELHSLSKFDVSYND 578 (688)
Q Consensus 510 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~ 578 (688)
+| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|++|| +|+
T Consensus 108 -l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 108 -LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp -HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred -CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 34 58888888888888888885433 46788888888888888888776653 77788888886 665
Q ss_pred Ccc
Q 005619 579 LSG 581 (688)
Q Consensus 579 l~~ 581 (688)
++.
T Consensus 184 i~~ 186 (198)
T 1ds9_A 184 VDV 186 (198)
T ss_dssp GTT
T ss_pred cCH
Confidence 543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=2.1e-14 Score=131.00 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=96.8
Q ss_pred eeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC
Q 005619 480 FMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 480 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
....+.+..++....+.|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|+++++|+.|+|++|++++..
T Consensus 18 ~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 34555566666666789999999999999999999999999999999999999877777899999999999999999877
Q ss_pred CcCCCCCCCCCEEecCCCcCccCCCCCcccC
Q 005619 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590 (688)
Q Consensus 560 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 590 (688)
+..|..+++|++|++++|++.|.++...++.
T Consensus 98 ~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp TTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred HHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 7779999999999999999999887544433
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.4e-14 Score=132.94 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=65.4
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCc--cccCCCCCCeEeCCCCcccccCCcC----CCCCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPE--SFSNLKMIESLDLSHNKLNGQIPPQ----LTELH 567 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~ 567 (688)
++.|+.|++++|.+++..+..|..+++|+.|+|++|+++ .+|. .++.+++|+.|++++|+++. +|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 456777777777777665566688888888888888886 4554 77888888888888888874 4553 78888
Q ss_pred CCCEEecCCCcCcc
Q 005619 568 SLSKFDVSYNDLSG 581 (688)
Q Consensus 568 ~L~~L~ls~N~l~~ 581 (688)
+|++||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887653
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=5.4e-14 Score=128.95 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=87.2
Q ss_pred ccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcc
Q 005619 352 IFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK 431 (688)
Q Consensus 352 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~ 431 (688)
+..+++|+.|++++|++.. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 4455667777777777653 343222333777777777777653 45677777777777777776433222222
Q ss_pred cCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC
Q 005619 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI 511 (688)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 511 (688)
+++|+.|++++|.++ .+
T Consensus 87 --------------------------------------------------------------l~~L~~L~L~~N~i~-~~ 103 (176)
T 1a9n_A 87 --------------------------------------------------------------LPDLTELILTNNSLV-EL 103 (176)
T ss_dssp --------------------------------------------------------------CTTCCEEECCSCCCC-CG
T ss_pred --------------------------------------------------------------CCCCCEEECCCCcCC-cc
Confidence 456777777777775 34
Q ss_pred Ch--hhhccCCCCeeeCCCCcCccCCCc----cccCCCCCCeEeCCCCccc
Q 005619 512 PS--EICDLQNIHGLNLSHNFLSGSIPE----SFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 512 p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~ 556 (688)
|. .+..+++|+.|++++|.++ .+|. .++.+++|+.||+++|...
T Consensus 104 ~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 104 GDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 44 6777888888888888887 3454 3777888888888888765
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.4e-15 Score=142.48 Aligned_cols=152 Identities=25% Similarity=0.238 Sum_probs=118.8
Q ss_pred CccceEeeecCccccCCch------hccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCC
Q 005619 332 SSVEHLYLQSNALGGSIPN------TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRK 405 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 405 (688)
..++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444445555555444443 78888999999999999976 56 8888999999999999998 57777777899
Q ss_pred CCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccc
Q 005619 406 LSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNR 485 (688)
Q Consensus 406 L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 485 (688)
|+.|++++|++++ +| .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~----------------------------------------------------------- 113 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEK----------------------------------------------------------- 113 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHH-----------------------------------------------------------
T ss_pred CCEEECcCCcCCc-CC-cccc-----------------------------------------------------------
Confidence 9999999999985 34 3332
Q ss_pred cccccccccccccEEEccCCcccccCC-hhhhccCCCCeeeCCCCcCccCCCcc----------ccCCCCCCeEeCCCCc
Q 005619 486 YESYKGVILDYMAGLDLSSNKLTGDIP-SEICDLQNIHGLNLSHNFLSGSIPES----------FSNLKMIESLDLSHNK 554 (688)
Q Consensus 486 ~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~ 554 (688)
++.|+.|++++|.+++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|+.|| +|.
T Consensus 114 --------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 114 --------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp --------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred --------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 4678899999999986433 57889999999999999998776653 78899999997 677
Q ss_pred ccc
Q 005619 555 LNG 557 (688)
Q Consensus 555 l~~ 557 (688)
++.
T Consensus 184 i~~ 186 (198)
T 1ds9_A 184 VDV 186 (198)
T ss_dssp GTT
T ss_pred cCH
Confidence 663
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=7e-12 Score=130.92 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=65.6
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccC
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLS 332 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~ 332 (688)
..+|..+..|+.+.+..+.. ......|.+++.|+.+.+. +.++.+...+|.+|.+|+.+++..+ ++......| ++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 33455555555555544322 2334455556666666664 2344344555666666666666543 444444444 566
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcC
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYL 392 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 392 (688)
+|+.+.+..+ ++.....+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 6666666543 44344456666777777777665431 13455566677666655544
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=1.2e-11 Score=129.23 Aligned_cols=318 Identities=10% Similarity=0.146 Sum_probs=175.8
Q ss_pred CcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc---CCCcCcccccCCCCCCEEeccCCcCCCc
Q 005619 177 EGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN---FDGQIFPNYVNLTRLLFLYLDNNHFSGK 252 (688)
Q Consensus 177 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 252 (688)
+.+...+|.++. .|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 334556777774 5888888754 44 6788888888999999887763 55555667888888888777654 4445
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-cc
Q 005619 253 IKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NL 331 (688)
Q Consensus 253 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~ 331 (688)
...+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+... .....+ .+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhc
Confidence 5566777888888888654 33355566777888888887654 33344555654 46777777654322 222333 56
Q ss_pred CccceEeeecCccccCCchhcc--------------CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc
Q 005619 332 SSVEHLYLQSNALGGSIPNTIF--------------RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP 397 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~~~~~~--------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 397 (688)
.+++.......... .....+. ....+..+.+.. .+......+|..+..|+.+.+..+... +..
T Consensus 205 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~ 281 (394)
T 4gt6_A 205 FALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGT 281 (394)
T ss_dssp TTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECT
T ss_pred cccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecC
Confidence 66666655544332 1111111 112223333322 122223345555666666666544332 344
Q ss_pred hhhcCCCCCCEEEccCCcCccccch-hhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcce
Q 005619 398 HQLCQLRKLSIMDLSHNRLNGSIPA-CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQV 476 (688)
Q Consensus 398 ~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 476 (688)
.+|.++++|+.+.+.. .++ .++. ++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~-~I~~~aF---------------------------------------------------- 307 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RIT-ELPESVF---------------------------------------------------- 307 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCC-EECTTTT----------------------------------------------------
T ss_pred cccccccccccccCCC-ccc-ccCceee----------------------------------------------------
Confidence 4555666666665532 222 1111 11
Q ss_pred EEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 477 EVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
..+.+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++...
T Consensus 308 ---------------~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 308 ---------------AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp ---------------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred ---------------cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 11445666666543 44455566677777777777543 55445566777777777777666543
Q ss_pred ccCCcCCCCCCCCCEEecCCCc
Q 005619 557 GQIPPQLTELHSLSKFDVSYND 578 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~N~ 578 (688)
. ..+.....|+.+.+..|.
T Consensus 371 ~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 371 W---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp H---HTCBCCCCC---------
T ss_pred h---hhhhccCCCCEEEeCCCC
Confidence 2 344555566666655443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.1e-12 Score=119.15 Aligned_cols=66 Identities=27% Similarity=0.287 Sum_probs=54.7
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++++..
T Consensus 53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 456777777777777677777888999999999999999777778999999999999999988654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=6.4e-14 Score=144.20 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred cccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeCCCCcccc
Q 005619 496 YMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
.|++|||++|.+++. ++..+...++|+.|+|++|.|++. ++..+...++|++|||++|.++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 445555555555432 133344445555555555555432 22233334555555555555553
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=1.5e-12 Score=133.72 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=83.7
Q ss_pred cccccEEEccC-CcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEE
Q 005619 494 LDYMAGLDLSS-NKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 494 l~~L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 572 (688)
+++|+.|+|++ |.+++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..+..+..++ |++|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 46799999996 999999889999999999999999999999999999999999999999999988777777776 9999
Q ss_pred ecCCCcCccCCC
Q 005619 573 DVSYNDLSGPIP 584 (688)
Q Consensus 573 ~ls~N~l~~~~p 584 (688)
++++|++.|.|+
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999999876
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=4.8e-12 Score=115.26 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=87.3
Q ss_pred ccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCC
Q 005619 497 MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 576 (688)
Q Consensus 497 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 576 (688)
-+.+++++|+++ .+|..+. ++|+.|+|++|+|++.+|..|+++++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367999999997 6676664 8999999999999999999999999999999999999988777889999999999999
Q ss_pred CcCccCCCC-CcccCCcCccccCCCCCCC
Q 005619 577 NDLSGPIPD-KEQFSTFDESSYRGNLHLC 604 (688)
Q Consensus 577 N~l~~~~p~-~~~~~~~~~~~~~~n~~l~ 604 (688)
|++++..|. -..+..+....+.+|+.-|
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999976554 2345555555566665444
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2.6e-13 Score=139.62 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=33.1
Q ss_pred ccccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccCCCccccCC---C--CCCeEe--CCCCcccc
Q 005619 495 DYMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGSIPESFSNL---K--MIESLD--LSHNKLNG 557 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~--~L~~L~--Ls~N~l~~ 557 (688)
+.|+.|||++|.+++. ++..+...++|++|+|++|.|++.....+..+ . .|+.+. +..|.++.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 4566677777766543 23344456777777777777765444333322 1 166666 66666553
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=9.3e-10 Score=114.24 Aligned_cols=298 Identities=9% Similarity=0.076 Sum_probs=198.6
Q ss_pred hhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCC
Q 005619 13 VIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF 92 (688)
Q Consensus 13 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 92 (688)
++....+|+.+.+... ++ .|+..+|.+|++|+.+++..+ ...++..+|.++ +|+.+.+.. .+..++.......
T Consensus 41 ~~~~~~~i~~v~ip~~-vt--~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT--SIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE--EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC
T ss_pred ccccccCCEEEEeCCC-cc--ChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccC
Confidence 4666678888888754 33 355678889999999998754 556777788887 677777764 3666655444445
Q ss_pred CCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCC--CCCCCCCCcCEEEccCCCCCC------------CCChh
Q 005619 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGF--QLTSAQHGLISLDISSNNFTG------------KLPQN 158 (688)
Q Consensus 93 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~L~~L~ls~n~~~~------------~~~~~ 158 (688)
+|+.+++..+ ++ .+....+.++ +++.+.+..+ ++.+ .....+..++.+.+..+.... .....
T Consensus 114 ~L~~i~lp~~-~~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 DLDDFEFPGA-TT-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred CcccccCCCc-cc-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 8999988765 33 3444455443 5666655443 2211 122356667776665443220 01111
Q ss_pred hhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCC
Q 005619 159 MGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238 (688)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 238 (688)
+.....+..+.+.... .......+..+..|+.+.+..+ +. .+....+..+..|+.+.+..+ ++......|.++.+
T Consensus 190 -~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 190 -YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp -CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred -ccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 1134455555554432 2244566777888888888655 33 566777788889999988765 55555677888889
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
|+.+.+..+ +......+|..+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 999988654 55455667888899999999888887777788999999999999754 6656677899999999998875
Q ss_pred CcCcccccccc
Q 005619 319 NNLSGSMISTL 329 (688)
Q Consensus 319 n~l~~~~~~~~ 329 (688)
+ ++......|
T Consensus 343 ~-v~~I~~~aF 352 (379)
T 4h09_A 343 S-ITLIESGAF 352 (379)
T ss_dssp T-CCEECTTTT
T ss_pred c-cCEEchhHh
Confidence 4 555555555
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=1.5e-09 Score=112.70 Aligned_cols=314 Identities=9% Similarity=0.056 Sum_probs=169.3
Q ss_pred hhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch-hhhCCCCCCEEECCCCcCCCCCchHHhhCCC
Q 005619 39 SLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN-FLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117 (688)
Q Consensus 39 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 117 (688)
.+....+|+.+.+... +..++..+|.+|.+|+.+.+..+ +..|+. ++.++ +|+.+.+..+ ++ .+....|.. .
T Consensus 41 ~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T 113 (379)
T ss_dssp TGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred ccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence 4566778888888643 56777778888888998888754 666644 45554 6777777654 44 555555644 3
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccC
Q 005619 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSS 197 (688)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 197 (688)
+|+.+.+..+-..-........+++.+.+..+ ++ .+....+..+..++...+..+.........+ ....
T Consensus 114 ~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-------- 182 (379)
T 4h09_A 114 DLDDFEFPGATTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LYNK-------- 182 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTE-EEET--------
T ss_pred CcccccCCCccccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeecccce-eccc--------
Confidence 67777776542110000111223444444332 22 3333333345555555554332211100000 0000
Q ss_pred CcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCC
Q 005619 198 NKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277 (688)
Q Consensus 198 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 277 (688)
. ......+..+..+..+.+.... .......+..+.+|+.+.+..+ +......++..+..|+.+.+..+ ++...
T Consensus 183 ~----~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 183 N----KTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp T----SSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred c----cceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence 0 0000112233344444443321 1223344555666666666543 33344455666667777776654 44444
Q ss_pred chhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCC
Q 005619 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGS 356 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~ 356 (688)
...|.++.+|+.+.+..+ +......+|.+|.+|+.+.+.++.+.......| ++.+|+.+.+..+ ++.....+|.+|.
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 556666777777776543 443455567777777777777766666655555 6777777777543 4434455677777
Q ss_pred CccEEeCcCCcCCCcCchhhhcCC
Q 005619 357 ALETLDLRDNYFFGRIPHQINEHS 380 (688)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~l~ 380 (688)
+|+.+.+..+ ++.....+|.++.
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEECCc-cCEEchhHhhCCC
Confidence 8887777654 4444455666654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=4.3e-11 Score=122.78 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=89.4
Q ss_pred EEEccCC-cccccCChhhhccCCCCeeeCCC-CcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCC
Q 005619 499 GLDLSSN-KLTGDIPSEICDLQNIHGLNLSH-NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 576 (688)
Q Consensus 499 ~LdLs~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 576 (688)
.++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|.++++|++|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4799998 898 4787 99999999999996 999988889999999999999999999999999999999999999999
Q ss_pred CcCccCCCCCcccCCcCccccCCCCCCCC
Q 005619 577 NDLSGPIPDKEQFSTFDESSYRGNLHLCG 605 (688)
Q Consensus 577 N~l~~~~p~~~~~~~~~~~~~~~n~~l~~ 605 (688)
|+|++..|.......+......+|+.-|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99997665443323355666677776664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=3.1e-09 Score=108.17 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=41.3
Q ss_pred cccccEEEccCCcccccCChhhh---ccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeCCCCcccccCCcCCCC-
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEIC---DLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIPPQLTE- 565 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 565 (688)
++.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34555555555555433322222 345666666666666543 2233344566666666666665432222222
Q ss_pred CCCCCEEecCCCc
Q 005619 566 LHSLSKFDVSYND 578 (688)
Q Consensus 566 l~~L~~L~ls~N~ 578 (688)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2446666665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.6e-09 Score=110.31 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=28.3
Q ss_pred cCccceEeeecCccccCCchhcc---CCCCccEEeCcCCcCCCcC----chhhhcCCCccEEeccCCcCC
Q 005619 331 LSSVEHLYLQSNALGGSIPNTIF---RGSALETLDLRDNYFFGRI----PHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 393 (688)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44555555555554432222221 2345555555555554322 122233455555555555544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=4e-08 Score=90.07 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=8.2
Q ss_pred cCCCCCCEEEccCCcCc
Q 005619 401 CQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 401 ~~l~~L~~L~ls~n~l~ 417 (688)
...++|++|+|++|.+.
T Consensus 62 ~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCCSCCEEECTTSCCC
T ss_pred HhCCCcCEEECcCCCCC
Confidence 33444555555555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.9e-08 Score=91.06 Aligned_cols=87 Identities=18% Similarity=0.323 Sum_probs=69.9
Q ss_pred cccccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeC--CCCccccc----C
Q 005619 494 LDYMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDL--SHNKLNGQ----I 559 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~ 559 (688)
.+.|++|||++|.+... +...+...+.|++|+|++|.|++. +...+...+.|++|+| ++|.++.. +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 35789999999999754 345566678999999999999854 4566788899999999 88999854 3
Q ss_pred CcCCCCCCCCCEEecCCCcCc
Q 005619 560 PPQLTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 560 p~~l~~l~~L~~L~ls~N~l~ 580 (688)
...+...++|++|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 345566689999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.4e-07 Score=90.84 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=35.6
Q ss_pred hccCCCCeeeCCCCcCcc--CCCccccCCCCCCeEeCCCCcccccCCcCCCCCC--CCCEEecCCCcCccCCC
Q 005619 516 CDLQNIHGLNLSHNFLSG--SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH--SLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 516 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p 584 (688)
.++++|+.|+||+|+|++ .+|..++.+++|+.|+|++|++++. ..+..+. +|++|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345555566666665554 2334445555666666666665543 2233333 56666666666655554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=7.1e-08 Score=92.84 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=66.5
Q ss_pred cccccccEEEccCCcccc--cCChhhhccCCCCeeeCCCCcCccCCCccccCCC--CCCeEeCCCCcccccCCc------
Q 005619 492 VILDYMAGLDLSSNKLTG--DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLK--MIESLDLSHNKLNGQIPP------ 561 (688)
Q Consensus 492 ~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------ 561 (688)
..++.|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347899999999999998 5578888999999999999999965 3344444 999999999999987663
Q ss_pred -CCCCCCCCCEEe
Q 005619 562 -QLTELHSLSKFD 573 (688)
Q Consensus 562 -~l~~l~~L~~L~ 573 (688)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367789998886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=3.1e-06 Score=75.22 Aligned_cols=83 Identities=8% Similarity=-0.013 Sum_probs=44.4
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCc-CCCcCchhhhcC----CCccEEeccCCc-CCCCCchhhcCCCCC
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNY-FFGRIPHQINEH----SNLRALLLRGNY-LQGPIPHQLCQLRKL 406 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 406 (688)
.|++|++++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555555444444444555566666666653 443333334332 356666666663 554444445566677
Q ss_pred CEEEccCCc
Q 005619 407 SIMDLSHNR 415 (688)
Q Consensus 407 ~~L~ls~n~ 415 (688)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.2e-06 Score=75.20 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=70.2
Q ss_pred CCCCcEEEccCCcCcccccccc-ccCccceEeeecCc-cccCCchhccCC----CCccEEeCcCCc-CCCcCchhhhcCC
Q 005619 308 LAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNA-LGGSIPNTIFRG----SALETLDLRDNY-FFGRIPHQINEHS 380 (688)
Q Consensus 308 l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~l~ 380 (688)
-..|++||+++|.+++.....+ .+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999988766666 89999999999995 776555566653 479999999985 8776667788899
Q ss_pred CccEEeccCCcC
Q 005619 381 NLRALLLRGNYL 392 (688)
Q Consensus 381 ~L~~L~L~~n~l 392 (688)
+|+.|++++|.-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 999999999963
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.59 E-value=9.8e-05 Score=62.59 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=48.2
Q ss_pred eeeCCCCcCc-cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCC
Q 005619 523 GLNLSHNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 523 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 584 (688)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.|.|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 6777777776 34554432 468899999999998888889999999999999999999875
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00017 Score=65.40 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=48.8
Q ss_pred CccceEeeecCccccC----CchhccCCCCccEEeCcCCcCCCcC----chhhhcCCCccEEeccCCc---CCCC----C
Q 005619 332 SSVEHLYLQSNALGGS----IPNTIFRGSALETLDLRDNYFFGRI----PHQINEHSNLRALLLRGNY---LQGP----I 396 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~---l~~~----~ 396 (688)
+.|+.|+|++|.+.+. +...+..-+.|++|+|++|.|.+.. .+.+..-+.|+.|+|++|. +... +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 4455555555555432 2233334467777777777775432 2344455668888887653 3321 2
Q ss_pred chhhcCCCCCCEEEccCCcC
Q 005619 397 PHQLCQLRKLSIMDLSHNRL 416 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l 416 (688)
.+.+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 34455567888888887754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00044 Score=62.61 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=30.5
Q ss_pred CccceEeeecCccccCC----chhccCCCCccEEeCcCC---cCCC----cCchhhhcCCCccEEeccCCcC
Q 005619 332 SSVEHLYLQSNALGGSI----PNTIFRGSALETLDLRDN---YFFG----RIPHQINEHSNLRALLLRGNYL 392 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l 392 (688)
+.|++|+|+.|.|.+.. ...+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34555555555544322 223333455677777644 2322 1234455556777777766544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0014 Score=55.42 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=47.1
Q ss_pred cEEEccCCccc-ccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 498 AGLDLSSNKLT-GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 498 ~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
..+|.++++++ ..+|..+ -++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36889999987 3566543 246999999999999877888999999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.49 E-value=9.1 Score=29.87 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=28.8
Q ss_pred CCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccC
Q 005619 4 NQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSM 53 (688)
Q Consensus 4 n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~ 53 (688)
..++.+-..+|.+|++|+.+.+..+- + .+....|.+|.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~--~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-G--LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-S--CCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-h--eEcHHHHhccCCccEEEEcC
Confidence 34556666677777777777776542 2 23334666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.37 E-value=42 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=23.8
Q ss_pred ccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCC
Q 005619 507 LTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552 (688)
Q Consensus 507 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 552 (688)
++.+-..+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666543 3334445555556665555543
Done!