BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005620
(687 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 66/106 (62%)
Query: 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLE 202
P LL VLD+LQ KD +F++PV E+PDY + I HPMDFAT+RK+L+A Y L
Sbjct: 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH 72
Query: 203 EFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQDSD 248
EFE+D LI N M+YNA DT+++R A + D R++ D
Sbjct: 73 EFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVD 118
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 60/93 (64%)
Query: 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSY 200
+ P ++LL L +LQ+KD +G F+ PV A P Y II HPMDF T++ K+ A Y
Sbjct: 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKS 70
Query: 201 LEEFEQDVFLICSNAMQYNAPDTIYFRQARSIL 233
+ EF+ D L+C NAM YN PDT+Y++ A+ IL
Sbjct: 71 VTEFKADFKLMCDNAMTYNRPDTVYYKLAKKIL 103
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 59/83 (71%)
Query: 147 LLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQ 206
LL L++LQ+KDT +FSEPV +E+PDY + I PMDF T+++ L+A Y ++FE+
Sbjct: 11 LLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEE 70
Query: 207 DVFLICSNAMQYNAPDTIYFRQA 229
D LI SN ++YNA DTI++R A
Sbjct: 71 DFNLIVSNCLKYNAKDTIFYRAA 93
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLE 202
P ++ L ++ +LQ+KD FS PV P Y II HPMDF+T+++K+ Y +E
Sbjct: 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 203 EFEQDVFLICSNAMQYNAPDTIYFRQARSIL 233
E + + L+C+NAM YN P+TIY++ A+ +L
Sbjct: 68 ELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 98
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 145 RKLLLFVLD---RLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYL 201
R+L LF+ D RL + +FS+PVD E+ DY E+I PMD +TV K+D Y
Sbjct: 11 RELRLFLRDVTKRLATDKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTA 70
Query: 202 EEFEQDVFLICSNAMQYNAPD 222
++F +D+ LICSNA++YN PD
Sbjct: 71 KDFLKDIDLICSNALEYN-PD 90
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 145 RKLLLF---VLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYL 201
R+L +F V RL + VF++PVDP E+PDY +I PMD ++V K+D Y +
Sbjct: 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTV 68
Query: 202 EEFEQDVFLICSNAMQYNAPD 222
+++ +D+ LICSNA++YN PD
Sbjct: 69 KDYLRDIDLICSNALEYN-PD 88
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 115 DQMEEKVLKATDTLHGLPVESAGPTTTLPDRKLLLFVLDRLQKKDTYGV-----FSEPVD 169
D +EK+ + D L L ++ P D+ F+LD + + V F PV+
Sbjct: 138 DLCDEKLKEKEDKLARLE-KAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVN 196
Query: 170 PAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
+PDY+++I +PMD T+RK + Y E F DV LI +N+++YN P++ Y + A
Sbjct: 197 KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 256
Query: 230 RSILDLA 236
+ I+++
Sbjct: 257 QEIVNVC 263
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F PV+ + DY++II PMD T+R+ + Y EEF + + LI N+ YN P
Sbjct: 68 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 127
Query: 224 IYFRQARSILDLAKKDFENLRQDSD 248
+ ++S+LDL E L++ D
Sbjct: 128 SLTQISQSMLDLCD---EKLKEKED 149
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 115 DQMEEKVLKATDTLHGLPVESAGPTTTLPDRKLLLFVLDRLQKKDTYGV-----FSEPVD 169
D +EK+ + D L L ++ P D+ F+LD + + V F PV+
Sbjct: 105 DLCDEKLKEKEDKLARLE-KAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVN 163
Query: 170 PAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
+PDY+++I +PMD T+RK + Y E F DV LI +N+++YN P++ Y + A
Sbjct: 164 KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 223
Query: 230 RSILDLA 236
+ I+++
Sbjct: 224 QEIVNVC 230
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F PV+ + DY++II PMD T+R+ + Y EEF + + LI N+ YN P
Sbjct: 35 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 94
Query: 224 IYFRQARSILDLAKKDFENLRQDSD 248
+ ++S+LDL E L++ D
Sbjct: 95 SLTQISQSMLDLCD---EKLKEKED 116
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 115 DQMEEKVLKATDTLHGLPVESAGPTTTLPDRKLLLFVLDRLQKKDTYGV-----FSEPVD 169
D +EK+ + D L L ++ P D+ F+LD + + V F PV+
Sbjct: 117 DLCDEKLKEKEDKLARLE-KAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVN 175
Query: 170 PAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
+PDY+++I +PMD T+RK + Y E F DV LI +N+++YN P++ Y + A
Sbjct: 176 KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 235
Query: 230 RSILDLA 236
+ I+++
Sbjct: 236 QEIVNVC 242
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F PV+ + DY++II PMD T+R+ + Y EEF + + LI N+ YN P
Sbjct: 47 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 106
Query: 224 IYFRQARSILDLAKKDFENLRQDSD 248
+ ++S+LDL E L++ D
Sbjct: 107 SLTQISQSMLDLCD---EKLKEKED 128
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 164 FSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD EL DYH+II HPMD +TV++K+D Y + F DV L+ SN +YN P
Sbjct: 36 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 95
Query: 222 DTIYFRQARSILDLAKKDFENL 243
D AR + D+ + F +
Sbjct: 96 DHEVVAMARKLQDVFEMRFAKM 117
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 144 DRKLLLFVLDRLQKKDTYGV-----FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAY 198
D+ F+LD + + V F PV+ +PDY+++I +PMD T+RK + Y
Sbjct: 26 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 85
Query: 199 SYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDL 235
E F DV LI +N+++YN P++ Y + A+ I+++
Sbjct: 86 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV 122
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 164 FSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD EL DYH+II HPMD +TV++K+D Y + F DV L+ SN +YN P
Sbjct: 31 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 90
Query: 222 DTIYFRQARSILDLAKKDFENL 243
D AR + D+ + F +
Sbjct: 91 DHEVVAMARKLQDVFEMRFAKM 112
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 150 FVLDRLQKKDTYGV-----FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEF 204
F+LD + + V F PV+ +PDY+++I +P+D T+RK + Y E F
Sbjct: 29 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESF 88
Query: 205 EQDVFLICSNAMQYNAPDTIYFRQARSILDL 235
DV LI +N+++YN P++ Y + A+ I+++
Sbjct: 89 LDDVNLILANSVKYNGPESQYTKTAQEIVNI 119
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD L DY +II HPMD +T++ KL+A Y +EF DV L+ SN +YN P
Sbjct: 25 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 84
Query: 222 DTIYFRQARSILDLAKKDFENLRQ 245
D AR + D+ + F + Q
Sbjct: 85 DHEVVAMARKLQDVFEMRFAKMLQ 108
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD + L DYH+II HPMD +TV++K++ Y +EF DV L+ SN +YN P
Sbjct: 25 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 84
Query: 222 DTIYFRQARSILDL 235
D AR + D+
Sbjct: 85 DHDVVAMARKLQDV 98
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY--NAP 221
F +PVD E PDY +II PMDF TVR+ LDAG Y EF +D+ LI SNA Y N
Sbjct: 31 FRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKR 90
Query: 222 DTIY 225
IY
Sbjct: 91 SKIY 94
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD + L DYH+II HPMD +TV++K++ Y +EF DV L+ SN +YN P
Sbjct: 31 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 90
Query: 222 DTIYFRQARSILDL 235
D AR + D+
Sbjct: 91 DHDVVAMARKLQDV 104
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD + L DYH+II HPMD +TV++K++ Y +EF DV L+ SN +YN P
Sbjct: 29 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 88
Query: 222 DTIYFRQARSILDL 235
D AR + D+
Sbjct: 89 DHDVVAMARKLQDV 102
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 145 RKLLLFVLDRLQKKDTYGV-FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYL 201
R+ L+ L+ L ++D + F +PVDP L PDY +I+ +PMD +T+++KLD G Y
Sbjct: 13 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP 72
Query: 202 EEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQ 245
++ DV+L+ +NA YN + ++ + ++ +++ + + Q
Sbjct: 73 WQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 145 RKLLLFVLD---RLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYL 201
R+L LF+ D RL + +FS+PV DY E+I PMD +TV K+D Y
Sbjct: 11 RELRLFLRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTA 65
Query: 202 EEFEQDVFLICSNAMQYNAPD 222
++F +D+ LICSNA++YN PD
Sbjct: 66 KDFLKDIDLICSNALEYN-PD 85
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFL 210
+L LQ F +PV+ E+PDY++ I PMD +T+ KL++ Y +E+F D L
Sbjct: 21 ILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARL 80
Query: 211 ICSNAMQYNAPDTIYFRQARSI 232
+ +N YN +T Y++ A +
Sbjct: 81 VFNNCRMYNGENTSYYKYANRL 102
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD L DY +II HPMD +T++ KL++ Y +EF DV L+ SN +YN P
Sbjct: 33 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92
Query: 222 DTIYFRQARSILDLAKKDFENLRQDSDD 249
D AR + D+ + F + + ++
Sbjct: 93 DHEVVAMARKLQDVFEMRFAKMPDEPEE 120
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 145 RKLLLFVLDRLQKKDTYGV-FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYL 201
R+ L+ L+ L ++D + F +PVDP L PDY +I+ +PMD +T+++KLD G Y
Sbjct: 15 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP 74
Query: 202 EEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQ 245
++ DV+L+ +NA YN + ++ + ++ +++ + + Q
Sbjct: 75 WQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 118
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSY 200
T D + L VL LQ F EPVDP + PDY+ +I PMD AT+ +++ Y
Sbjct: 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK 129
Query: 201 LEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
L EF D+ I N YN D+ +++ A
Sbjct: 130 LTEFVADMTKIFDNCRYYNPSDSPFYQCA 158
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSY 200
T D + L VL LQ F EPVDP + PDY+ +I PMD AT+ +++ Y
Sbjct: 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK 129
Query: 201 LEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
L EF D+ I N YN D+ +++ A
Sbjct: 130 LTEFVADMTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 49/98 (50%)
Query: 132 PVESAGPTTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRK 191
P+ S T D + L VL LQ F EPVDP + PDY+ +I PMD AT+ +
Sbjct: 2 PLGSVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEE 61
Query: 192 KLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
++ Y L EF D+ I N YN D+ +++ A
Sbjct: 62 RVQRRYYEKLTEFVADMTAIFDNCRYYNPSDSPFYQCA 99
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 145 RKLLLFVLDRLQKKDTYGV-FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYL 201
R+ L+ L+ L ++D + F +PVDP L PDY +I+ PMD +T+++KLD G Y
Sbjct: 18 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEP 77
Query: 202 EEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQ 245
++ D++L+ +NA YN + ++ + ++ +++ + + Q
Sbjct: 78 WQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQ 121
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD L DY +II HPMD +T++ KL+A Y +EF DV L+ SN +YN P
Sbjct: 44 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 103
Query: 222 DTIYFRQARSILDLAKKDFENL 243
D AR + D+ + F +
Sbjct: 104 DHEVVAMARKLQDVFEMRFAKM 125
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD L DY +II HPMD +T++ KL+A Y +EF DV L+ SN +YN P
Sbjct: 46 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105
Query: 222 DTIYFRQARSILDLAKKDFENL 243
D AR + D+ + F +
Sbjct: 106 DHEVVAMARKLQDVFEMRFAKM 127
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 49/98 (50%)
Query: 132 PVESAGPTTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRK 191
P+ S T D + L VL LQ F EPVDP + PDY+ +I PMD AT+ +
Sbjct: 2 PLGSVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEE 61
Query: 192 KLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
++ Y L EF D+ I N YN D+ +++ A
Sbjct: 62 RVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCA 99
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 36/56 (64%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219
F +PVD E PDY +II PMDFATVR+ L+AG Y E +DV LI SN+ Y
Sbjct: 42 FRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSY 200
T D + L VL LQ F EPVDP + PDY+ +I PMD AT+ +++ Y
Sbjct: 18 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK 77
Query: 201 LEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
L EF D+ I N YN D+ +++ A
Sbjct: 78 LTEFVADMTKIFDNCRYYNPSDSPFYQCA 106
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKL--DAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PV P +PDY++II +PMD +T++K+L D YS E+F D LI N ++N P
Sbjct: 102 FQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 160
Query: 222 DT 223
D+
Sbjct: 161 DS 162
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F E VD ELP+Y+EI+ PM + V++ L+ G YS + +F D+ L+ NA +N P
Sbjct: 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 293
Query: 224 IYFRQARSILD----LAKKDF 240
+ ++ A ++ + L +K+F
Sbjct: 294 LIYKDATTLTNYFNYLIQKEF 314
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFL 210
VLD ++ F EPVD + P+Y++II PMD +++ KKL+ G Y EEF D+
Sbjct: 24 VLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKT 83
Query: 211 ICSNAMQYNAPDTIYFRQARSI 232
+ N +YN + Y + + ++
Sbjct: 84 MFRNCRKYNGESSEYTKMSDNL 105
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F E VD ELP+Y+EI+ PM + V++ L+ G YS + +F D+ L+ NA +N P
Sbjct: 219 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 278
Query: 224 IYFRQARSILD----LAKKDF 240
+ ++ A ++ + L +K+F
Sbjct: 279 LIYKDATTLTNYFNYLIQKEF 299
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 144 DRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEE 203
D L +L ++ + F PV+ +P Y ++I PMDF+T+R+KL +G Y LE
Sbjct: 11 DLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET 70
Query: 204 FEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQDS 247
F DV L+ N +N D+ R ++ +K FE D+
Sbjct: 71 FALDVRLVFDNCETFNEDDSDIGRAGHNM----RKYFEKKWTDT 110
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 43/89 (48%)
Query: 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSY 200
T D + L VL LQ F EPVDP + PDY+ +I P D AT +++ Y
Sbjct: 70 TEKDYEGLKRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEK 129
Query: 201 LEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
L EF D I N YN D+ +++ A
Sbjct: 130 LTEFVADXTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 144 DRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEE 203
D L +L ++ + F PV+ +P Y ++I PMDF+T+R+KL +G Y LE
Sbjct: 14 DLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET 73
Query: 204 FEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQDS 247
F DV L+ N +N D+ R ++ +K FE D+
Sbjct: 74 FALDVRLVFDNCETFNEDDSDIGRAGHNM----RKYFEKKWTDT 113
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKL--DAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PV P +PDY++II +PMD +T++K+L D YS E+F D LI N ++N P
Sbjct: 41 FQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99
Query: 222 DT 223
D+
Sbjct: 100 DS 101
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD L DY +II HP D +T++ KL++ Y +EF DV L SN +YN P
Sbjct: 31 FYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPP 90
Query: 222 DTIYFRQARSILDLAKKDF 240
D AR + D+ + F
Sbjct: 91 DHEVVAXARKLQDVFEXRF 109
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F EPV +E PDY+E+I P+D T+ ++L + Y + F D+ + +N +YN PD+
Sbjct: 24 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 83
Query: 224 IYFRQARSI 232
Y R A ++
Sbjct: 84 EYCRCASAL 92
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F EPV +E PDY+E+I P+D T+ ++L + Y + F D+ + +N +YN PD+
Sbjct: 28 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 87
Query: 224 IYFRQARSI 232
Y R A ++
Sbjct: 88 EYCRCASAL 96
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 163 VFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222
VF + ELP+Y+E+I P+DF +++++ Y L + E+DV L+C NA +N
Sbjct: 38 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 97
Query: 223 TIYFRQARSILDLAKKDFENLRQ---DSDDSE 251
++ + + + + F ++RQ DDSE
Sbjct: 98 SLIYEDSIVLQSV----FTSVRQKIEKEDDSE 125
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 132 PVESAGPTTTLPDRK------LLLFVLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHP 183
P E++ P P R+ LL VL L K F +PVD +L PDY++II P
Sbjct: 26 PPETSNPNK--PKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTP 83
Query: 184 MDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP--DTIYFRQARSILDLAK 237
MD T++K+L+ Y +E QD + +N YN P D + +A L L K
Sbjct: 84 MDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 139
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 132 PVESAGPTTTLPDRK------LLLFVLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHP 183
P E++ P P R+ LL VL L K F +PVD +L PDY++II P
Sbjct: 10 PPETSNPNK--PKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTP 67
Query: 184 MDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP--DTIYFRQARSILDLAK 237
MD T++K+L+ Y +E QD + +N YN P D + +A L L K
Sbjct: 68 MDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 123
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 163 VFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222
VF + ELP+Y+E+I P+DF +++++ Y L + E+DV L+C NA +N
Sbjct: 39 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 98
Query: 223 TIYF 226
++ +
Sbjct: 99 SLIY 102
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 132 PVESAGPTTTLPDRK------LLLFVLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHP 183
P E++ P P R+ LL VL L K F +PVD +L PDY++II P
Sbjct: 6 PPETSNPNK--PKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTP 63
Query: 184 MDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP--DTIYFRQARSILDLAK 237
MD T++K+L+ Y +E QD + +N YN P D + +A L L K
Sbjct: 64 MDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 119
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 163 VFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222
VF + ELP+Y+E+I P+DF +++++ Y L + E+DV L+C NA +N
Sbjct: 34 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 93
Query: 223 TIYF 226
++ +
Sbjct: 94 SLIY 97
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 132 PVESAGPTTTLPDRK------LLLFVLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHP 183
P E++ P P R+ LL VL L K F +PVD +L PDY++II P
Sbjct: 6 PPETSNPNK--PKRETNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTP 63
Query: 184 MDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP--DTIYFRQARSILDLAK 237
MD T++K+L+ Y +E QD + +N YN P D + +A L L K
Sbjct: 64 MDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 119
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F E VD ELP+Y+EI+ P + V++ L+ G YS + +F D L+ NA +N P
Sbjct: 178 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 237
Query: 224 IYFRQARSI 232
+ ++ A ++
Sbjct: 238 LIYKDATTL 246
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223
F E VD ELP+Y+EI+ P + V++ L+ G YS + +F D L+ NA +N P
Sbjct: 184 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 243
Query: 224 IYFRQARSI 232
+ ++ A ++
Sbjct: 244 LIYKDATTL 252
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 164 FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD +L PDYH+II +PMD T++K+L+ Y E QD + +N YN P
Sbjct: 40 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 99
Query: 222 --DTIYFRQARSILDLAK 237
D + QA + L K
Sbjct: 100 TDDIVLMAQALEKIFLQK 117
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 164 FSEPVDPAELP--DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F PVD L +Y++++ +PMD T++ K+D Y EF DV L+ N +YN P
Sbjct: 38 FYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPP 97
Query: 222 DTIYFRQARSILDLAKKDFENLRQDSDDS 250
D AR++ D+ + F + + +S
Sbjct: 98 DHEVVAMARTLQDVFELHFAKIPDEPIES 126
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 164 FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD +L PDYH+II +PMD T++K+L+ Y E QD + +N YN P
Sbjct: 38 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 97
Query: 222 --DTIYFRQARSILDLAK 237
D + QA + L K
Sbjct: 98 TDDIVLMAQALEKIFLQK 115
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 164 FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD +L PDYH+II +PMD T++K+L+ Y E QD + +N YN P
Sbjct: 42 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 101
Query: 222 --DTIYFRQARSILDLAK 237
D + QA + L K
Sbjct: 102 TDDIVLMAQALEKIFLQK 119
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 163 VFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219
VF + ELP+Y+E+I P+DF +++++ Y L + E+DV L+C NA +N
Sbjct: 39 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 95
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 163 VFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222
+F + + PDY+ II P+D T+ +++ G+Y + +D+ L+ NA YN P
Sbjct: 32 LFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPG 91
Query: 223 TIYFRQARSI 232
+ F+ A SI
Sbjct: 92 SQVFKDANSI 101
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 163 VFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222
+F + + PDY+ II P+D T+ +++ G+Y + +D+ L+ NA YN P
Sbjct: 34 LFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPG 93
Query: 223 TIYFRQARSI 232
+ F+ A SI
Sbjct: 94 SQVFKDANSI 103
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 155 LQKKDTYGVFSEPVDPAE--LPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLIC 212
L K + +F + VD + PDY+++I +P F+ ++ KL G Y+Y EF +DV LI
Sbjct: 33 LSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92
Query: 213 SNAMQYNAPDTI 224
N YN +++
Sbjct: 93 DNCSLYNTSNSV 104
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDV 208
V+ L K F +PVD +L PDYH+II PMD T++++L+ Y E QD
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 209 FLICSNAMQYNAP 221
+ +N YN P
Sbjct: 100 NTMFTNCYIYNKP 112
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLD---AGAYSYLEEFEQDVFLICSNAMQYN 219
F EPV PA +P+Y++II PMD +TV+KKL + Y ++F DV LI N ++N
Sbjct: 102 FQEPV-PASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDV 208
V+ L K F +PVD +L PDYH+II PMD T++++L+ Y E QD
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 209 FLICSNAMQYNAP 221
+ +N YN P
Sbjct: 100 NTMFTNCYIYNKP 112
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 151 VLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDV 208
VL L K F PVD +LPDY+ II +PMD T++K+L+ Y+ E +D
Sbjct: 21 VLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDF 80
Query: 209 FLICSNAMQYNAP--DTIYFRQARSILDLAK 237
+ SN YN P D + QA L + K
Sbjct: 81 NTMFSNCYLYNKPGDDIVLMAQALEKLFMQK 111
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 171 AELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQAR 230
+ PDY+ II P+D T+ +++ G+Y + +D+ L+ NA YN P + F+ A
Sbjct: 43 VQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDAN 102
Query: 231 SI 232
SI
Sbjct: 103 SI 104
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFL 210
+L +++ + F EPV E P Y+E+I PMD T+ ++L Y + F D+
Sbjct: 23 ILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQR 82
Query: 211 ICSNAMQYNAPDTIYFRQA 229
+ +N +YN P++ Y++ A
Sbjct: 83 VFTNCKEYNPPESEYYKCA 101
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFL 210
+L +++ + F EPV E P Y+E+I PMD T+ ++L Y + F D+
Sbjct: 21 ILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQR 80
Query: 211 ICSNAMQYNAPDTIYFRQA 229
+ +N +YN P++ Y++ A
Sbjct: 81 VFTNCKEYNPPESEYYKCA 99
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 171 AELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA- 229
+ELPDY+ I PMD +R + A Y ++ +D ++ +NA YN P+++ ++ A
Sbjct: 49 SELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDAL 108
Query: 230 --RSILDLAKKDFE 241
+L ++D E
Sbjct: 109 VLHKVLLETRRDLE 122
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 171 AELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQA 229
+ELPDY+ I PMD +R + A Y ++ +D ++ +NA YN P+++ ++ A
Sbjct: 49 SELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 164 FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD +L PDYH+II P D T++++L+ Y E QD +N YN P
Sbjct: 27 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKP 86
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 164 FSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221
F +PVD +L PDYH+II P D T++++L+ Y E QD +N YN P
Sbjct: 33 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKP 92
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 151 VLDRLQKKDTYGVFSEPVDPAEL--PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDV 208
VL L K F +PVD +L PDY+ II PMD T++K+L+ Y E +D
Sbjct: 22 VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDF 81
Query: 209 FLICSNAMQYN--APDTIYFRQARSILDLAK 237
+ SN YN D + QA L + K
Sbjct: 82 NTMFSNCYLYNKTGDDIVVMAQALEKLFMQK 112
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 174 PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSIL 233
PDY+E+++ P+D +++KL Y + D L+ +NA Y PD+ ++ A +
Sbjct: 42 PDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLW 101
Query: 234 DL 235
DL
Sbjct: 102 DL 103
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 174 PDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSIL 233
PDY++ I P+ +R KL Y L+ E D+ L+ NA +YN P++ +++ +
Sbjct: 54 PDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQ 113
Query: 234 DLAKKDFENLRQDSD 248
+ + + L + D
Sbjct: 114 QVMQAKKKELARRDD 128
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 175 DYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218
DY+E I+ P+D T+ K++ G Y +E F+ D+ + NA +Y
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 172 ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARS 231
+ PDY++II PMD + + Y+ E +D+ L+ NA YN + + A
Sbjct: 60 DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHI 119
Query: 232 ILDLAKKDFENLRQDSDDSE 251
+ L K+ + L DD +
Sbjct: 120 LEKLLKEKRKELGPLPDDDD 139
>pdb|2GJU|A Chain A, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|B Chain B, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|C Chain C, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|D Chain D, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
Length = 252
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 145 RKLLLFVLDRLQKKDTYGVFSEPVDPAE---LPD----YHEIIAHPMD------FATVRK 191
R L ++++D++ K + +GV+ PV+P + LPD Y+E I P+ A+ R
Sbjct: 119 RDLPIYLVDKIGKNEIFGVYGSPVNPFDGEILPDQPTSYYEAIMRPVKEYEMLLVASPRY 178
Query: 192 KLDA 195
LDA
Sbjct: 179 PLDA 182
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 127 TLHGLPVESAGP------TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEII 180
LHG P + G T PDRK L +++ F + VD LP + +
Sbjct: 324 VLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAVE 383
Query: 181 AH 182
AH
Sbjct: 384 AH 385
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 127 TLHGLPVESAGP------TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEII 180
LHG P + G T PDRK L +++ F + VD LP + +
Sbjct: 326 VLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAVE 385
Query: 181 AH 182
AH
Sbjct: 386 AH 387
>pdb|3LQH|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo In The Free Form
pdb|3LQI|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|C Chain C, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQJ|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
pdb|3LQJ|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
Length = 183
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 182 HPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216
P+D V++K+D G Y+ + EF D+ I A+
Sbjct: 103 QPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAI 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,394,322
Number of Sequences: 62578
Number of extensions: 626201
Number of successful extensions: 1019
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 86
length of query: 687
length of database: 14,973,337
effective HSP length: 105
effective length of query: 582
effective length of database: 8,402,647
effective search space: 4890340554
effective search space used: 4890340554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)