Query 005620
Match_columns 687
No_of_seqs 369 out of 1328
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 11:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0955 PHD finger protein BR1 99.9 1.8E-27 4E-32 279.4 15.5 340 139-498 561-919 (1051)
2 cd05497 Bromo_Brdt_I_like Brom 99.9 2.2E-25 4.8E-30 202.6 11.6 101 143-243 5-107 (107)
3 cd05496 Bromo_WDR9_II Bromodom 99.9 3.3E-25 7.2E-30 205.3 11.6 106 142-247 4-110 (119)
4 cd05495 Bromo_cbp_like Bromodo 99.9 7.1E-25 1.5E-29 199.6 12.3 102 142-243 2-106 (108)
5 cd05507 Bromo_brd8_like Bromod 99.9 6E-25 1.3E-29 198.6 11.3 101 143-243 3-103 (104)
6 cd05505 Bromo_WSTF_like Bromod 99.9 4.8E-25 1E-29 197.3 10.4 95 145-239 2-96 (97)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 7.3E-25 1.6E-29 197.0 10.7 96 143-239 3-98 (99)
8 cd05509 Bromo_gcn5_like Bromod 99.9 1.7E-24 3.6E-29 193.7 11.0 101 143-243 1-101 (101)
9 cd05504 Bromo_Acf1_like Bromod 99.9 2.6E-24 5.7E-29 197.9 11.5 102 143-244 12-113 (115)
10 cd05510 Bromo_SPT7_like Bromod 99.9 2.6E-24 5.7E-29 197.3 11.4 104 142-245 6-111 (112)
11 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.2E-24 4.7E-29 192.5 10.1 96 145-240 2-97 (97)
12 cd05513 Bromo_brd7_like Bromod 99.9 2.5E-24 5.5E-29 193.1 10.2 96 143-238 1-96 (98)
13 cd05512 Bromo_brd1_like Bromod 99.9 2.7E-24 5.8E-29 192.8 9.2 95 143-237 1-95 (98)
14 cd05502 Bromo_tif1_like Bromod 99.9 1.4E-23 3E-28 190.8 12.1 101 143-244 4-107 (109)
15 cd05511 Bromo_TFIID Bromodomai 99.9 1.3E-23 2.8E-28 192.5 10.5 103 145-247 2-104 (112)
16 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.7E-23 3.7E-28 190.1 10.5 100 144-243 2-107 (107)
17 cd05528 Bromo_AAA Bromodomain; 99.9 2.7E-23 5.8E-28 190.6 11.5 101 143-243 3-107 (112)
18 cd05506 Bromo_plant1 Bromodoma 99.9 2.3E-23 4.9E-28 185.7 10.5 96 145-240 2-99 (99)
19 KOG1474 Transcription initiati 99.9 1.7E-23 3.8E-28 239.7 11.9 113 139-251 218-332 (640)
20 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.6E-23 7.9E-28 185.8 10.5 96 145-240 2-102 (102)
21 cd05500 Bromo_BDF1_2_I Bromodo 99.9 4.7E-23 1E-27 185.7 11.0 97 143-239 4-102 (103)
22 cd05498 Bromo_Brdt_II_like Bro 99.9 4.5E-23 9.7E-28 184.9 10.4 96 145-240 2-102 (102)
23 cd05501 Bromo_SP100C_like Brom 99.9 2.3E-22 4.9E-27 181.9 11.9 96 145-243 4-99 (102)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 1.4E-22 3E-27 182.6 9.8 96 145-240 2-103 (103)
25 cd05524 Bromo_polybromo_I Brom 99.9 2.4E-22 5.2E-27 184.5 10.8 102 145-246 4-111 (113)
26 cd05515 Bromo_polybromo_V Brom 99.9 2.4E-22 5.2E-27 182.0 10.0 97 145-241 2-104 (105)
27 smart00297 BROMO bromo domain. 99.9 8.7E-22 1.9E-26 175.7 11.2 101 142-242 6-106 (107)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 1.3E-21 2.7E-26 183.3 12.3 104 139-242 20-127 (128)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 7.8E-22 1.7E-26 179.3 10.5 96 144-239 3-104 (106)
30 cd05517 Bromo_polybromo_II Bro 99.9 6.7E-22 1.4E-26 178.8 9.8 94 145-238 2-101 (103)
31 cd05520 Bromo_polybromo_III Br 99.9 8.1E-22 1.8E-26 178.3 9.6 81 159-239 22-102 (103)
32 cd05518 Bromo_polybromo_IV Bro 99.9 9.2E-22 2E-26 178.0 9.9 93 146-238 3-101 (103)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.8 5.7E-21 1.2E-25 172.8 9.8 96 144-239 2-103 (104)
34 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 2.1E-20 4.6E-25 170.0 10.4 95 144-240 2-102 (106)
35 cd04369 Bromodomain Bromodomai 99.8 1.8E-20 3.8E-25 161.6 9.4 95 145-239 2-98 (99)
36 PF00439 Bromodomain: Bromodom 99.8 1.8E-20 3.9E-25 160.4 8.4 84 148-231 1-84 (84)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 8E-20 1.7E-24 167.2 11.3 99 146-244 3-107 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.7 1.1E-17 2.4E-22 153.4 10.6 100 144-245 4-109 (110)
39 COG5076 Transcription factor i 99.7 5E-17 1.1E-21 175.8 9.9 106 143-248 142-253 (371)
40 KOG1245 Chromatin remodeling c 99.6 3.5E-16 7.5E-21 190.9 7.6 95 148-243 1306-1400(1404)
41 KOG1472 Histone acetyltransfer 99.5 7.3E-14 1.6E-18 160.2 7.3 102 142-243 605-706 (720)
42 KOG0386 Chromatin remodeling c 99.2 4.8E-11 1E-15 139.5 8.9 103 146-248 1027-1135(1157)
43 cd05494 Bromodomain_1 Bromodom 99.1 6.3E-11 1.4E-15 109.5 4.0 77 145-221 5-90 (114)
44 KOG0008 Transcription initiati 99.0 4.7E-10 1E-14 133.8 5.9 97 146-242 1385-1481(1563)
45 KOG1827 Chromatin remodeling c 98.9 1.8E-09 3.9E-14 123.0 8.5 103 139-241 48-156 (629)
46 cd05491 Bromo_TBP7_like Bromod 98.9 3.3E-09 7.3E-14 98.6 6.1 43 181-223 62-104 (119)
47 KOG0008 Transcription initiati 98.7 3E-08 6.5E-13 118.9 7.2 97 144-240 1262-1358(1563)
48 KOG1474 Transcription initiati 98.6 6.9E-08 1.5E-12 112.1 6.5 99 154-252 3-103 (640)
49 KOG1472 Histone acetyltransfer 98.5 5.8E-08 1.3E-12 112.4 4.8 70 157-226 300-369 (720)
50 KOG1828 IRF-2-binding protein 98.3 1.2E-07 2.6E-12 102.5 -0.8 98 144-241 20-117 (418)
51 KOG1828 IRF-2-binding protein 98.2 1.1E-06 2.4E-11 95.2 3.9 89 145-234 210-298 (418)
52 COG5076 Transcription factor i 96.6 0.00061 1.3E-08 74.6 0.9 90 154-243 274-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.2 0.037 8.1E-07 53.1 5.6 66 183-248 59-124 (131)
54 KOG0644 Uncharacterized conser 89.0 0.33 7.1E-06 58.2 3.5 62 177-238 1047-1108(1113)
55 KOG0732 AAA+-type ATPase conta 83.1 0.51 1.1E-05 58.3 1.2 63 160-222 532-601 (1080)
56 KOG1827 Chromatin remodeling c 69.0 1 2.2E-05 53.1 -1.5 75 161-235 213-287 (629)
57 KOG0644 Uncharacterized conser 44.0 11 0.00024 45.9 1.4 73 164-237 86-188 (1113)
58 PF02178 AT_hook: AT hook moti 27.2 26 0.00056 21.4 0.4 9 22-30 2-10 (13)
59 PF14372 DUF4413: Domain of un 27.1 1.8E+02 0.0039 26.4 6.1 49 195-243 3-51 (101)
60 TIGR02606 antidote_CC2985 puta 25.6 1.1E+02 0.0023 26.4 4.0 28 187-214 12-39 (69)
61 smart00412 Cu_FIST Copper-Fist 24.5 34 0.00073 26.8 0.7 18 9-28 22-39 (39)
62 smart00384 AT_hook DNA binding 21.9 43 0.00092 24.1 0.7 10 22-31 2-11 (26)
63 PRK10991 fucI L-fucose isomera 20.2 1.3E+02 0.0027 36.0 4.5 52 165-217 187-238 (588)
No 1
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=279.41 Aligned_cols=340 Identities=29% Similarity=0.315 Sum_probs=241.4
Q ss_pred CCChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 139 TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
....+++++|+.+++.|++.+..++|..|||+.++|||+++|++||||.+|+.++..+.|.++++|++|+.||+.||+.|
T Consensus 561 ~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 561 LGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred ccCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CC------cccccccCCCCCC-CcCcCCCCCCCCCCCCCCCCcccc
Q 005620 219 NAPDTIYFRQARSILDLAKKDFENLRQDSDDSE-PQ------PRVKVVRRGRPPK-SLKKSLDSSPSDRIASEFSSDATL 290 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~ekl~~e~~~eE-p~------~~pK~~r~gRp~k-~~Kksl~~pp~~~~~s~~Ssdatl 290 (687)
|..++.+|++|..+++...+.|.+.+.+.+... .. ......+..++.. ..................+..+.+
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~~~~~e~~~ 720 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRPNLWAPEEPQVDLETFINLSKEHDL 720 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCccccccccccccccccccccChhhhh
Confidence 999999999999999999999999888776443 11 1111222222221 111111111122222233333221
Q ss_pred --cCCCCCCCcccccccccCCCCCCCCCCCC---cccccCCCCCCCCCCCCCCcccccccccccchHHHhHHHHhhCCcc
Q 005620 291 --ANGGDNVSWASAHNLRKGPITSVRFRPAD---SVNRASHGSHVHGSHAGETYTSWLSEWENEFPASVVKAVLKYGKKQ 365 (687)
Q Consensus 291 --A~~~d~~~~~~~~~iRR~s~t~~~~RPkr---s~~R~~h~~~~~~~~~d~~ys~kk~~~el~F~~eVlkeL~K~G~k~ 365 (687)
..+.+........+++|.. +.+-.+ +..|-.+.. .+.. .....+...+.++..|+|.+.
T Consensus 721 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~s~~r~~~~~-----------~~e~-~~~~~~p~~~~~~~~~~~~~~ 784 (1051)
T KOG0955|consen 721 KIPLDKNEKKKATKLSIPRNR----DSRIIRKEKSRLRKCGIV-----------DTET-SGSPSIPSGGEKTVKKDGLNS 784 (1051)
T ss_pred ccccccchhhhhhhccccccc----ccccchhhHHHHhhccCc-----------Cccc-cCCCCCCCccccchhcccccc
Confidence 1111111111122222221 000000 000111100 0001 011244444466667777665
Q ss_pred cccccCcccccCCCCcCCCCCCceeeecCceeeEEEecccCcchhHHHHHHHHhhhChhHHHHHHHhhhhcCCCCCCCCC
Q 005620 366 FTVDVNRRDTYHDSMASRHEPSVLTTFEGELKQLTVVGLNTEHGYARSLARFASDLGPVVWNIASKKIESVLPLGVKFSP 445 (687)
Q Consensus 366 ~~~de~rR~Ty~~~~~~~~~~~~~~~~~~e~K~lv~vg~~~~~~YarSlarFaa~lGp~~w~ia~~ki~~~lp~~~~fg~ 445 (687)
.+++.+|.+-.++..+++++++++++.|++.|+++..+.+|+||+++.+++++++||.+|+.+++..++.+..||.
T Consensus 785 ----~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~~~~~~~~~~~~~~~~g~ 860 (1051)
T KOG0955|consen 785 ----KNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNLASTSCSVTKATFTGNGV 860 (1051)
T ss_pred ----cccccccchhhcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccccccccccccCCccCCCC
Confidence 8999999998777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCcc---cc--ccCCccccccCCCCCCCC-CCCCCCCCCcccchhhcccccC
Q 005620 446 GWVGENKATER---QQ--YSYPEKQKLSNNYISGDH-SSRLVSPATSDSNFILENRYSL 498 (687)
Q Consensus 446 gWvge~~~~~~---~~--~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~~~~~~~~ 498 (687)
||+++....+. ++ ..++....++..++...| +++...++++.+++.++|..+.
T Consensus 861 g~~~~tP~~~~e~~~~~ss~~p~~~s~~~~p~~~~~~~s~~r~~ta~~~sa~~~~~~~g 919 (1051)
T KOG0955|consen 861 GGDVKTPKRPSEPSSIISSLSPSSKSTSICPKHGVCKPSGERMPTASVTSADISNINGG 919 (1051)
T ss_pred CccccCCCCcCCccccccccCCcCCccccCCccccCCcccccCCccccccccccccccc
Confidence 99888866663 33 234434444444455555 5888888999999888886655
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.2e-25 Score=202.63 Aligned_cols=101 Identities=33% Similarity=0.464 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
+++.++..||+.|.+++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46778889999999999999999999987 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 005620 221 PDTIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~~ekl 243 (687)
++|.|+.+|..|++.|++.+.+|
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998764
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.3e-25 Score=205.27 Aligned_cols=106 Identities=27% Similarity=0.396 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 005620 142 LPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~p 221 (687)
..|++.|..||+.|++++.+++|++|||+..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005620 222 -DTIYFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 222 -dS~V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
++.||.+|..|+..|++.+.+|....
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999986543
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.1e-25 Score=199.57 Aligned_cols=102 Identities=30% Similarity=0.584 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHcc-CCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 142 LPDRKLLLFVLDRLQKK-DTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~-d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
..+++.|..||++|.++ +.+++|.+||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 9999999999987 59999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 005620 219 NAPDTIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~ekl 243 (687)
|+++|.++++|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 5
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6e-25 Score=198.59 Aligned_cols=101 Identities=29% Similarity=0.502 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.|++.|..|++.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||.|||.||++||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 005620 223 TIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl 243 (687)
+.++.+|..|++.|.+.++.+
T Consensus 83 s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999888753
No 6
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.8e-25 Score=197.30 Aligned_cols=95 Identities=28% Similarity=0.388 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTI 224 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~ 224 (687)
.+.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+.+.|.++++|.+||.|||.||++||+++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005620 225 YFRQARSILDLAKKD 239 (687)
Q Consensus 225 V~k~A~~Le~~fek~ 239 (687)
|+.+|..|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.3e-25 Score=196.95 Aligned_cols=96 Identities=31% Similarity=0.531 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
++..+|+.+++.|+ ++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56789999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005620 223 TIYFRQARSILDLAKKD 239 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~ 239 (687)
|.++.+|+.|.+.|+..
T Consensus 82 s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 HKLTQAAKAIVKICEQE 98 (99)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998864
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=193.74 Aligned_cols=101 Identities=41% Similarity=0.616 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
|+++.|..||+.|.+++.+++|.+||++..+|+||++|++||||+||++||+.+.|.++++|..||.|||.||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 005620 223 TIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl 243 (687)
|.++.+|..|++.|++.++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998864
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.6e-24 Score=197.92 Aligned_cols=102 Identities=31% Similarity=0.491 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.....|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+.+.|.++++|..||.|||.||++||+++
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~ 91 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEH 91 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q 005620 223 TIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~ 244 (687)
|.++.+|..|+..|++.++++.
T Consensus 92 s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 92 TSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999874
No 10
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.6e-24 Score=197.29 Aligned_cols=104 Identities=30% Similarity=0.343 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 142 LPDRKLLLFVLDRLQKK-DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~-d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
.++.+.|..||+.|+++ +.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||.|||.||+.||+
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhhhc
Q 005620 221 PDT-IYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 221 pdS-~V~k~A~~Le~~fek~~ekl~~ 245 (687)
+++ .++++|..|++.|++.+..++.
T Consensus 86 ~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 86 DPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 865 6889999999999999998853
No 11
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.2e-24 Score=192.48 Aligned_cols=96 Identities=34% Similarity=0.577 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTI 224 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~ 224 (687)
...|+.||+.|.+++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||.|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005620 225 YFRQARSILDLAKKDF 240 (687)
Q Consensus 225 V~k~A~~Le~~fek~~ 240 (687)
++++|..|++.|++.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999865
No 12
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.5e-24 Score=193.15 Aligned_cols=96 Identities=44% Similarity=0.780 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
|++++|..||+.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|++||+|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 005620 223 TIYFRQARSILDLAKK 238 (687)
Q Consensus 223 S~V~k~A~~Le~~fek 238 (687)
|.+|++|..|.+...+
T Consensus 81 s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 81 TIYYKAAKKLLHSGMK 96 (98)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 9999999999876554
No 13
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=192.77 Aligned_cols=95 Identities=51% Similarity=0.776 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
|+..+|+.||+.|+.++.+++|.+||++.++||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005620 223 TIYFRQARSILDLAK 237 (687)
Q Consensus 223 S~V~k~A~~Le~~fe 237 (687)
+.+|++|..|++...
T Consensus 81 s~~~~~A~~l~~~~~ 95 (98)
T cd05512 81 TIFYRAAVRLRDQGG 95 (98)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987654
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=190.85 Aligned_cols=101 Identities=30% Similarity=0.446 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhcccC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDA---GAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~---g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
..++.|..||..|.+++.+++|.+||++ .+|+||++|++||||+||++||+. +.|.++++|.+||+|||.||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999 899999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 220 APDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+++|.++.+|..|++.|++.+.++-
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999874
No 15
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.3e-23 Score=192.48 Aligned_cols=103 Identities=33% Similarity=0.576 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTI 224 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~ 224 (687)
...|+.|+.+|++++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++|.
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 005620 225 YFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 225 V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
++.+|..|...|++.+++++.+.
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999987644
No 16
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.7e-23 Score=190.11 Aligned_cols=100 Identities=26% Similarity=0.492 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHccCC------CCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 144 DRKLLLFVLDRLQKKDT------YGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 144 ~kk~L~~IL~~L~k~d~------s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
+.+.|..||+.|.++.. +++|.+||+...+||||++|++||||++|++||+.+.|.++++|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788999999998765 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl 243 (687)
||+++|.||.+|..|++.|+..++++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998764
No 17
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=2.7e-23 Score=190.61 Aligned_cols=101 Identities=36% Similarity=0.541 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
+++.+|+.|++.|++++.+++|.+||++.++||||++|++||||+||++||++++|.++++|.+||+|||.||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhh
Q 005620 223 ----TIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 223 ----S~V~k~A~~Le~~fek~~ekl 243 (687)
+.|+.+|..|++.|.+.++++
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999875
No 18
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.3e-23 Score=185.67 Aligned_cols=96 Identities=42% Similarity=0.605 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.+.|..||+.|++++.+++|..||++. .+|+||++|++||||+||++||+++.|.++++|..||.|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999977 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005620 223 TIYFRQARSILDLAKKDF 240 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ 240 (687)
|.++++|..|+..|++.|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999865
No 19
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.89 E-value=1.7e-23 Score=239.73 Aligned_cols=113 Identities=37% Similarity=0.600 Sum_probs=105.6
Q ss_pred CCChHHHHHHHHHHHHHHccCCCCCCCCCCCCCC--CCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 139 TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAE--LPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~e--lPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
.....+-+.|..||..|++|+++|+|.+|||+.. +||||+|||+||||+||++||.++.|.+..+|.+||+|||.||+
T Consensus 218 ~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 218 KLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQDSDDSE 251 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~~eE 251 (687)
+||.++++||.+|..|+++|+.+|..++.......
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~ 332 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESE 332 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999999887765433
No 20
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.6e-23 Score=185.77 Aligned_cols=96 Identities=34% Similarity=0.548 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcc---CCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 145 RKLLLFVLDRLQKK---DTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 145 kk~L~~IL~~L~k~---d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
.+.|..||+.|.++ +.+++|++|||+. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 47899999999984 5789999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005620 220 APDTIYFRQARSILDLAKKDF 240 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ 240 (687)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999864
No 21
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.7e-23 Score=185.66 Aligned_cols=97 Identities=30% Similarity=0.555 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
...+.|..||+.|++++.+++|..||++. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999999999999999999986 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005620 221 PDTIYFRQARSILDLAKKD 239 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~ 239 (687)
++|.++.+|..|++.|++.
T Consensus 84 ~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 22
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.5e-23 Score=184.88 Aligned_cols=96 Identities=41% Similarity=0.613 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcc---CCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 145 RKLLLFVLDRLQKK---DTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 145 kk~L~~IL~~L~k~---d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
++.|..||+.|.++ +.+++|.+||++. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 7899999999987 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005620 220 APDTIYFRQARSILDLAKKDF 240 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ 240 (687)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999865
No 23
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.3e-22 Score=181.90 Aligned_cols=96 Identities=23% Similarity=0.318 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTI 224 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~ 224 (687)
.+.|+.||..|.++..+++|..+ +..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||+++ .
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~ 80 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-D 80 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-H
Confidence 35699999999999999999653 46899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005620 225 YFRQARSILDLAKKDFENL 243 (687)
Q Consensus 225 V~k~A~~Le~~fek~~ekl 243 (687)
++.+|..|++.|++.|+++
T Consensus 81 ~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 81 FGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.4e-22 Score=182.62 Aligned_cols=96 Identities=27% Similarity=0.470 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcc------CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 145 RKLLLFVLDRLQKK------DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 145 kk~L~~IL~~L~k~------d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
++.|..|++.|..+ ..+++|.+||+...+||||++|++||||++|++||+.+.|.++++|..||+|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999954 457799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 005620 219 NAPDTIYFRQARSILDLAKKDF 240 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~ 240 (687)
|+++|.+|.+|..|++.|++.+
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.4e-22 Score=184.48 Aligned_cols=102 Identities=19% Similarity=0.335 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 145 RKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 145 kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
.+.|..|++.|+++. .+.+|..+|+...+||||++|++||||+||++||+.+.|.++++|..||.|||.||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999743 44589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 219 NAPDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
|+++|.+|++|..|++.|++.++++...
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999988654
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.4e-22 Score=182.00 Aligned_cols=97 Identities=23% Similarity=0.462 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcc------CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 145 RKLLLFVLDRLQKK------DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 145 kk~L~~IL~~L~k~------d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
++.|..|++.|... ..+++|.+||+..++||||++|++||||+||++||+++.|.++++|+.||.|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46777888887764 456799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 005620 219 NAPDTIYFRQARSILDLAKKDFE 241 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~e 241 (687)
|+++|.+|.+|..|++.|.+..+
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999987654
No 27
>smart00297 BROMO bromo domain.
Probab=99.86 E-value=8.7e-22 Score=175.66 Aligned_cols=101 Identities=41% Similarity=0.637 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 005620 142 LPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~p 221 (687)
..+...|..|++.+.+++.+++|.+||++..+|+||++|++||||.+|++||+++.|.++++|..||.|||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 005620 222 DTIYFRQARSILDLAKKDFEN 242 (687)
Q Consensus 222 dS~V~k~A~~Le~~fek~~ek 242 (687)
++.++.+|..|.+.|++.|.+
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.3e-21 Score=183.32 Aligned_cols=104 Identities=31% Similarity=0.455 Sum_probs=97.4
Q ss_pred CCChHHHHHHHHHHHHHH---ccCCCCCCCCCCCCC-CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005620 139 TTTLPDRKLLLFVLDRLQ---KKDTYGVFSEPVDPA-ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSN 214 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~---k~d~s~pF~ePVD~~-elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsN 214 (687)
......+..|..++++|. .++.+++|..||+.. .+|+||++|++||||+||++||+++.|.++++|..||+|||.|
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 99 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSN 99 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 344566788889999999 899999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHh
Q 005620 215 AMQYNAPDTIYFRQARSILDLAKKDFEN 242 (687)
Q Consensus 215 A~~YN~pdS~V~k~A~~Le~~fek~~ek 242 (687)
|+.||+++|.++.+|..|+..|.+.+..
T Consensus 100 a~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 100 AETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988754
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=7.8e-22 Score=179.34 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 144 DRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 144 ~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
+.+.|+.|++.|...+ .+++|.++|++..+||||++|++||||++|++||+++.|.++++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888888888643 4579999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005620 218 YNAPDTIYFRQARSILDLAKKD 239 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~ 239 (687)
||+++|.+|++|..|++.|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999864
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=6.7e-22 Score=178.80 Aligned_cols=94 Identities=23% Similarity=0.494 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 145 RKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 145 kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
++.|+.|++.|..+. .+++|.++|++..+||||++|++||||++|++||+.+.|.++++|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 577888888888754 44699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 005620 219 NAPDTIYFRQARSILDLAKK 238 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek 238 (687)
|+++|.+|.+|..|++.|+.
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 31
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=8.1e-22 Score=178.25 Aligned_cols=81 Identities=30% Similarity=0.514 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 005620 159 DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKK 238 (687)
Q Consensus 159 d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~fek 238 (687)
..+++|.++|+...+||||++|++||||+||++||+.+.|.++++|+.||.|||.||+.||+++|.+|.+|..|+++|++
T Consensus 22 ~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 22 LLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred CccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred H
Q 005620 239 D 239 (687)
Q Consensus 239 ~ 239 (687)
.
T Consensus 102 ~ 102 (103)
T cd05520 102 K 102 (103)
T ss_pred h
Confidence 3
No 32
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=9.2e-22 Score=177.97 Aligned_cols=93 Identities=25% Similarity=0.416 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHc------cCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 146 KLLLFVLDRLQK------KDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 146 k~L~~IL~~L~k------~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
+.|..|++.|.. +..+.+|..+|++..+||||++|++||||+||++||+++.|.++++|+.||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345555555554 35667999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 005620 220 APDTIYFRQARSILDLAKK 238 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek 238 (687)
+++|.||.+|..|+++|+.
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.7e-21 Score=172.85 Aligned_cols=96 Identities=24% Similarity=0.339 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHc------cCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 144 DRKLLLFVLDRLQK------KDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 144 ~kk~L~~IL~~L~k------~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
....+..|++.|.+ +..+++|..+|+...+||||++|++||||++|++||+++.|.++++|..||.|||.||+.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777777776 346779999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005620 218 YNAPDTIYFRQARSILDLAKKD 239 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~ 239 (687)
||++++.+|.+|..|++.|+++
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 34
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=2.1e-20 Score=170.03 Aligned_cols=95 Identities=25% Similarity=0.337 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHccCCC------CCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 144 DRKLLLFVLDRLQKKDTY------GVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 144 ~kk~L~~IL~~L~k~d~s------~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
+.+.|..|++.|...+.. .+|..+++...+||||++|++||||++|++||+. |.++++|+.||.|||.||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 457788888888875433 4999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 005620 218 YNAPDTIYFRQARSILDLAKKDF 240 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ 240 (687)
||+++|.+|.+|..|++.|.+.+
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998765
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=1.8e-20 Score=161.60 Aligned_cols=95 Identities=48% Similarity=0.729 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcc--CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 145 RKLLLFVLDRLQKK--DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 145 kk~L~~IL~~L~k~--d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
...|..|++.|..+ +.+.+|..||++..+|+||++|++||||.+|++||+++.|.++.+|.+||.|||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005620 223 TIYFRQARSILDLAKKD 239 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~ 239 (687)
+.++.+|..|+..|++.
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.82 E-value=1.8e-20 Score=160.36 Aligned_cols=84 Identities=49% Similarity=0.788 Sum_probs=80.1
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 005620 148 LLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFR 227 (687)
Q Consensus 148 L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k 227 (687)
|+.||+.|.+++.+++|..||+...+|+|+++|++||||++|++||+++.|.++++|..||++||.||+.||+++|.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 005620 228 QARS 231 (687)
Q Consensus 228 ~A~~ 231 (687)
+|++
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=8e-20 Score=167.19 Aligned_cols=99 Identities=25% Similarity=0.413 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHc-cCCCCCCCCCCCCC-----CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 146 KLLLFVLDRLQK-KDTYGVFSEPVDPA-----ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 146 k~L~~IL~~L~k-~d~s~pF~ePVD~~-----elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
.+|.+++..++. .+...+|..||... .+|+||++|++||||+||++||++++|++++||..||.|||+||+.||
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yN 82 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFH 82 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 367888888888 57779999999532 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 220 APDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+++|.++.+|+.|.+.+...+.+|.
T Consensus 83 g~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 83 GADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998874
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=1.1e-17 Score=153.35 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 144 DRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 144 ~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
.++.+..|++.|+.+. .+.+|.+.++ ..++||.+|++||||++|++||++|.|.++++|.+||.|||+||++
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~ 81 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH
Confidence 5788899999999875 3448988887 5578899999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
||.++|.||++|.+|+.+|.+...++..
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd~~~~ 109 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRDELCK 109 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998888754
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=5e-17 Score=175.78 Aligned_cols=106 Identities=28% Similarity=0.369 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHc------cCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 143 PDRKLLLFVLDRLQK------KDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 143 p~kk~L~~IL~~L~k------~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
...+.+..|+..+.. +....+|..+|++.++|+||.||+.||||.+|++||+.+.|.++++|..|++|||.||.
T Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~ 221 (371)
T COG5076 142 LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCK 221 (371)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 334444444444443 34667999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
+||++++.+|.+|..|+..|.+.++.++....
T Consensus 222 ~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~ 253 (371)
T COG5076 222 LYNGPDSSVYVDAKELEKYFLKLIEEIPEEML 253 (371)
T ss_pred hccCCCcchhhhhHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999998876554
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.62 E-value=3.5e-16 Score=190.89 Aligned_cols=95 Identities=34% Similarity=0.517 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 005620 148 LLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFR 227 (687)
Q Consensus 148 L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k 227 (687)
|..||..|..|+.+|||++||++..+||||+||++||||+||+.||..+.|.+.++|..||.|||.||.+||.+ +.|++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhh
Q 005620 228 QARSILDLAKKDFENL 243 (687)
Q Consensus 228 ~A~~Le~~fek~~ekl 243 (687)
+...|.++|++.|...
T Consensus 1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9999999999977653
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=7.3e-14 Score=160.20 Aligned_cols=102 Identities=30% Similarity=0.494 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 005620 142 LPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~p 221 (687)
-.....+..+|..|..|..+|+|.+||+..++||||++|++||||.||..+|+.+.|..+..|+.|+.+||.||+.||+.
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 005620 222 DTIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 222 dS~V~k~A~~Le~~fek~~ekl 243 (687)
++.+|+.|..|...|...+...
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred cchheecccchhhhhcchhhhh
Confidence 9999999999999998877765
No 42
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.17 E-value=4.8e-11 Score=139.52 Aligned_cols=103 Identities=25% Similarity=0.423 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcc------CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 146 KLLLFVLDRLQKK------DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 146 k~L~~IL~~L~k~------d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
+.+..|+....++ ..+..|...++.+++||||+||++||++..|+++|.++.|.++.+...||.++|.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 5566666666643 4556999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 220 APDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
.++|.||.+|..|+.+|.....++..+.+
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~~~~ 1135 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISKEDE 1135 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhcccc
Confidence 99999999999999999999999876444
No 43
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.09 E-value=6.3e-11 Score=109.51 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCC--CCCCchhhccCCccCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHHh
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDP--AELPDYHEIIAHPMDFATVRKKLDAGA-------YSYLEEFEQDVFLICSNA 215 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~--~elPDYyeIIK~PMDLsTIkkKLk~g~-------Y~S~~EF~~DV~LIfsNA 215 (687)
...|..+|..+.+++.+++|.+||++ ..+||||++||+||||+||+++|.++. |..-..+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 34556666666667799999999999 789999999999999999999999974 444445556666667776
Q ss_pred cccCCC
Q 005620 216 MQYNAP 221 (687)
Q Consensus 216 ~~YN~p 221 (687)
..||..
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 666653
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.97 E-value=4.7e-10 Score=133.84 Aligned_cols=97 Identities=29% Similarity=0.487 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHH
Q 005620 146 KLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIY 225 (687)
Q Consensus 146 k~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V 225 (687)
-++-.|+.+++.-..+|+|.+||+++.+|+||.+|++||||.+|.+++..++|.+.++|.+||++|+.||..||+.++.+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccc
Confidence 44556666777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005620 226 FRQARSILDLAKKDFEN 242 (687)
Q Consensus 226 ~k~A~~Le~~fek~~ek 242 (687)
..-|+++-++....+.+
T Consensus 1465 ~~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1465 TKKARKIGEVGLANLLE 1481 (1563)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999988877665544
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.93 E-value=1.8e-09 Score=122.99 Aligned_cols=103 Identities=21% Similarity=0.396 Sum_probs=91.5
Q ss_pred CCChHHHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005620 139 TTTLPDRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLIC 212 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIf 212 (687)
....+....+..||..+..+. ....|.+.++....|+||.+|..||+|..|++|+..+.|.+++.|..|+.||+
T Consensus 48 ~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ 127 (629)
T KOG1827|consen 48 VIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMT 127 (629)
T ss_pred ccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 445666777777777777653 33489999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 005620 213 SNAMQYNAPDTIYFRQARSILDLAKKDFE 241 (687)
Q Consensus 213 sNA~~YN~pdS~V~k~A~~Le~~fek~~e 241 (687)
+||+.||.+++.+|+++..|+..|.....
T Consensus 128 ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 128 ENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999999999887654
No 46
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.86 E-value=3.3e-09 Score=98.63 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=40.3
Q ss_pred CCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCC
Q 005620 181 AHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223 (687)
Q Consensus 181 K~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS 223 (687)
-.||||+||++||.+|.|.++++|++||+|||.||++||.++.
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3689999999999999999999999999999999999998743
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.66 E-value=3e-08 Score=118.89 Aligned_cols=97 Identities=29% Similarity=0.448 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCC
Q 005620 144 DRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223 (687)
Q Consensus 144 ~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS 223 (687)
+.-++..|++.+.......+|..||+..+++|||.||+.||||.++++.+....|.+-++|+.|+.||++|..+||++.+
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005620 224 IYFRQARSILDLAKKDF 240 (687)
Q Consensus 224 ~V~k~A~~Le~~fek~~ 240 (687)
.++..+..+...+-..|
T Consensus 1342 ~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999988766554443
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.56 E-value=6.9e-08 Score=112.08 Aligned_cols=99 Identities=29% Similarity=0.407 Sum_probs=90.3
Q ss_pred HHHccCCCCCCCCCCCCCC--CCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 005620 154 RLQKKDTYGVFSEPVDPAE--LPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARS 231 (687)
Q Consensus 154 ~L~k~d~s~pF~ePVD~~e--lPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~ 231 (687)
.+.++..+|+|..||+... +|+||.+|++|||+.+|+.++.+..|.+..+..+|+..+|.||..||.....|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 3567888999999999764 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCC
Q 005620 232 ILDLAKKDFENLRQDSDDSEP 252 (687)
Q Consensus 232 Le~~fek~~ekl~~e~~~eEp 252 (687)
++..|.+.+..+..+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~d~~~ 103 (640)
T KOG1474|consen 83 LEKLFPKKLRSMPSDEEDKSS 103 (640)
T ss_pred chhhcccccccccccccCCcc
Confidence 999999999988877765543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.54 E-value=5.8e-08 Score=112.42 Aligned_cols=70 Identities=36% Similarity=0.580 Sum_probs=65.5
Q ss_pred ccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q 005620 157 KKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYF 226 (687)
Q Consensus 157 k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~ 226 (687)
.+.++++|.++|++...|+||.||+.||||.++.+|+..+.|.+.++|..|+.+||.||..||.+.+...
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~ 369 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGL 369 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhh
Confidence 3788999999999999999999999999999999999999999999999999999999999999865433
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.28 E-value=1.2e-07 Score=102.51 Aligned_cols=98 Identities=31% Similarity=0.331 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCC
Q 005620 144 DRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDT 223 (687)
Q Consensus 144 ~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS 223 (687)
.......++.++-+++.-..|..||.....|+|.+||+.|||+.||+.|++.++|.++.+|..|..||+.||..||..++
T Consensus 20 ~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 20 DSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred chhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 34566778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005620 224 IYFRQARSILDLAKKDFE 241 (687)
Q Consensus 224 ~V~k~A~~Le~~fek~~e 241 (687)
.++..|..|..+....+.
T Consensus 100 v~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred cccccccccchhhcchhh
Confidence 999999988766544443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.18 E-value=1.1e-06 Score=95.20 Aligned_cols=89 Identities=22% Similarity=0.239 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q 005620 145 RKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTI 224 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~ 224 (687)
..++-...+++...+....|..+|.-..+|.|..+|++|+|+.|++.|.....|.| -+|.+|+.|||.||++||.++..
T Consensus 210 ~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 210 QQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchH
Confidence 45667778888888999999999998899999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005620 225 YFRQARSILD 234 (687)
Q Consensus 225 V~k~A~~Le~ 234 (687)
+|+.|..+..
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999998865
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.64 E-value=0.00061 Score=74.58 Aligned_cols=90 Identities=31% Similarity=0.401 Sum_probs=81.7
Q ss_pred HHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Q 005620 154 RLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSIL 233 (687)
Q Consensus 154 ~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le 233 (687)
.+..+-..|+|..++.....|+|+++|..+|+++++..+|..+.|....+|..|..++++||..||+....+++.+..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 33445577899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhh
Q 005620 234 DLAKKDFENL 243 (687)
Q Consensus 234 ~~fek~~ekl 243 (687)
..+...+...
T Consensus 354 ~~~~~~~~~~ 363 (371)
T COG5076 354 DFVIKKTRLI 363 (371)
T ss_pred hhHhhhhhhh
Confidence 8887766654
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.17 E-value=0.037 Score=53.05 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 183 PMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 183 PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.=-+...++-+.-..+..+|.+.++.+-.-..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999988766555455444444556678888877654443
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.99 E-value=0.33 Score=58.17 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=50.2
Q ss_pred hhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 005620 177 HEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKK 238 (687)
Q Consensus 177 yeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~fek 238 (687)
..-..-|..|..|..+|++.+|++.+.|..|+..|.+||.+|-+-+.-+-..+..|...|..
T Consensus 1047 ~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1047 DNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 33356789999999999999999999999999999999999998776555555555544443
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=83.13 E-value=0.51 Score=58.32 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCC-----CCchhhccCCccCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHhcccCCCC
Q 005620 160 TYGVFSEPVDPAE-----LPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQ--DVFLICSNAMQYNAPD 222 (687)
Q Consensus 160 ~s~pF~ePVD~~e-----lPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~--DV~LIfsNA~~YN~pd 222 (687)
....|-.|++... +++|.++|+.+||+.....++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3557888887653 4699999999999999999999999999999999 9999999999999874
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=69.01 E-value=1 Score=53.05 Aligned_cols=75 Identities=8% Similarity=-0.037 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 005620 161 YGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDL 235 (687)
Q Consensus 161 s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~ 235 (687)
.+.|.+.++.+.+|+||.+++-+|.+....+++..+.|.....|..|+.++|.|+..|+.....++.++..|.+.
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 457888888899999999999999999999999999999999999999999999999999888888887776443
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=44.01 E-value=11 Score=45.87 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHHH
Q 005620 164 FSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAY--------------S----------YLEE------FEQDVFLICS 213 (687)
Q Consensus 164 F~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y--------------~----------S~~E------F~~DV~LIfs 213 (687)
|.-++|....|.|..+...|.+|+|++..|.+..| . ++.+ ...-+.+|-.
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 44567777889999999999999999999998776 2 3333 5667788889
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHH
Q 005620 214 NAMQYNAPDTIYFRQARSILDLAK 237 (687)
Q Consensus 214 NA~~YN~pdS~V~k~A~~Le~~fe 237 (687)
||+.++.|++ +++-++.+.++.-
T Consensus 166 at~~~akPgt-mvqkmk~ikrLlg 188 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRLLG 188 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHHHh
Confidence 9999999999 7777776665543
No 58
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=27.21 E-value=26 Score=21.35 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=3.3
Q ss_pred ccCCCCChh
Q 005620 22 KKKGRPSLL 30 (687)
Q Consensus 22 kkkgrps~~ 30 (687)
|+.|||.+.
T Consensus 2 r~RGRP~k~ 10 (13)
T PF02178_consen 2 RKRGRPRKN 10 (13)
T ss_dssp --SS--TT-
T ss_pred CcCCCCccc
Confidence 678999874
No 59
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=27.07 E-value=1.8e+02 Score=26.39 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 005620 195 AGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 195 ~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~fek~~ekl 243 (687)
...|-|..-|...+..|-.....++..+..+..+|..|.+.|++.|++.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3468888888888888877777777778899999999999999999854
No 60
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=25.62 E-value=1.1e+02 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005620 187 ATVRKKLDAGAYSYLEEFEQDVFLICSN 214 (687)
Q Consensus 187 sTIkkKLk~g~Y~S~~EF~~DV~LIfsN 214 (687)
..|+.++..|.|.+..+++.|.-+++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998887753
No 61
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=24.51 E-value=34 Score=26.81 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=11.5
Q ss_pred ccccCCCchhhhcccCCCCC
Q 005620 9 MTTTSTSTATKKKKKKGRPS 28 (687)
Q Consensus 9 ~~~~~~~~~~~~~kkkgrps 28 (687)
-.|+-.+..+ =||||||+
T Consensus 22 C~H~dRpL~~--i~kkGRP~ 39 (39)
T smart00412 22 CNHNDRPLIP--VRPRGRPS 39 (39)
T ss_pred cccCCcccee--ecCCCCCC
Confidence 3455555543 46899996
No 62
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=21.93 E-value=43 Score=24.12 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=7.0
Q ss_pred ccCCCCChhh
Q 005620 22 KKKGRPSLLD 31 (687)
Q Consensus 22 kkkgrps~~d 31 (687)
||.|||.|..
T Consensus 2 RkRGRPrK~~ 11 (26)
T smart00384 2 RKRGRPRKAP 11 (26)
T ss_pred CCCCCCCCCC
Confidence 5778887754
No 63
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=20.15 E-value=1.3e+02 Score=35.99 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=44.6
Q ss_pred CCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 165 SEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 165 ~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
---||...+-+|+-|=-.++|+..|.+|++...|.. ++|...+..+-+||..
T Consensus 187 ts~vne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~ 238 (588)
T PRK10991 187 GSIVDHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKE 238 (588)
T ss_pred ccccCHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhccc
Confidence 334455567889999999999999999999999988 6999999999999864
Done!