Query 005620
Match_columns 687
No_of_seqs 369 out of 1328
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 02:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4alg_A Bromodomain-containing 99.9 2.6E-26 8.9E-31 219.3 12.5 113 139-251 28-142 (154)
2 3d7c_A General control of amin 99.9 2.9E-26 9.8E-31 207.6 11.7 107 139-245 3-109 (112)
3 2d9e_A Peregrin; four-helix bu 99.9 4.6E-26 1.6E-30 209.4 12.9 106 141-246 5-110 (121)
4 2oss_A HUNK1 protein, bromodom 99.9 9.2E-26 3.2E-30 209.0 13.5 107 140-246 18-126 (127)
5 3g0l_A Hwalp4, bromodomain adj 99.9 1.2E-25 4E-30 204.8 13.7 103 143-245 13-115 (117)
6 2dat_A Possible global transcr 99.9 9.6E-26 3.3E-30 207.5 12.8 107 139-245 9-121 (123)
7 2i7k_A Bromodomain-containing 99.9 1.1E-25 3.7E-30 206.1 12.5 106 141-246 6-111 (117)
8 1e6i_A Transcriptional activat 99.9 8.4E-26 2.9E-30 207.5 11.8 103 143-245 13-115 (121)
9 2grc_A Probable global transcr 99.9 1.1E-25 3.7E-30 208.9 11.3 113 139-251 7-126 (129)
10 3hme_A Bromodomain-containing 99.9 2.4E-25 8E-30 205.1 12.1 105 140-244 10-114 (123)
11 3nxb_A CAT eye syndrome critic 99.9 1.8E-25 6.3E-30 203.3 11.0 100 143-242 16-115 (116)
12 3q2e_A Bromodomain and WD repe 99.9 1.9E-25 6.4E-30 205.4 10.9 109 140-248 7-116 (123)
13 3rcw_A Bromodomain-containing 99.9 4.1E-25 1.4E-29 206.1 13.1 107 141-247 11-117 (135)
14 3jvl_A Bromodomain-containing 99.9 9.2E-26 3.2E-30 206.3 8.5 106 142-247 8-118 (120)
15 3mb4_A Protein polybromo-1; PB 99.9 2.5E-25 8.7E-30 204.9 11.3 105 141-245 13-123 (124)
16 2ouo_A HUNK1 protein, bromodom 99.9 2.6E-25 9E-30 206.7 11.0 103 143-245 22-129 (130)
17 3mb3_A PH-interacting protein; 99.9 4E-25 1.4E-29 206.1 12.0 108 140-247 18-126 (135)
18 2yyn_A Transcription intermedi 99.9 6.3E-25 2.2E-29 205.3 12.4 105 143-248 20-126 (135)
19 3ljw_A Protein polybromo-1; al 99.9 5.6E-25 1.9E-29 201.5 10.6 106 140-245 5-116 (120)
20 3p1f_A CREB-binding protein; s 99.9 8.9E-25 3E-29 199.6 10.6 106 140-245 8-116 (119)
21 3k2j_A Protein polybromo-1; PB 99.9 1.2E-24 4.3E-29 202.4 11.3 107 142-248 16-128 (130)
22 3iu5_A Protein polybromo-1; PB 99.9 1.1E-24 3.6E-29 198.4 10.3 104 143-246 5-114 (116)
23 3fkm_X Signaling protein; brom 99.9 2.3E-24 7.8E-29 208.2 12.5 106 139-244 17-124 (166)
24 3mqm_A Probable histone-lysine 99.9 1.8E-24 6.1E-29 199.5 10.3 104 143-246 9-118 (126)
25 2ri7_A Nucleosome-remodeling f 99.9 4.4E-24 1.5E-28 205.8 10.3 104 141-244 70-173 (174)
26 3uv4_A Second bromodomain of h 99.9 6E-24 2E-28 204.0 11.1 105 143-247 29-134 (158)
27 3tlp_A Protein polybromo-1; PB 99.9 1.1E-23 3.9E-28 199.5 11.0 105 145-249 26-137 (150)
28 3dai_A ATPase family AAA domai 99.9 5E-23 1.7E-27 191.1 11.8 99 143-241 10-112 (130)
29 3o36_A Transcription intermedi 99.9 8.6E-23 2.9E-27 199.0 10.4 103 140-243 78-182 (184)
30 3uv5_A Transcription initiatio 99.9 5.4E-22 1.8E-26 203.9 11.8 104 142-245 13-116 (265)
31 2dkw_A Hypothetical protein KI 99.9 1.1E-21 3.7E-26 183.0 11.6 97 141-242 10-110 (131)
32 2ro1_A Transcription intermedi 99.9 3.4E-22 1.1E-26 196.6 8.3 101 143-248 76-181 (189)
33 3u5n_A E3 ubiquitin-protein li 99.9 1.1E-21 3.6E-26 194.9 11.5 105 141-246 79-203 (207)
34 3uv5_A Transcription initiatio 99.8 2E-21 6.9E-26 199.6 11.6 104 144-247 137-241 (265)
35 3aad_A Transcription initiatio 99.8 2E-21 7E-26 202.4 8.0 103 142-244 46-148 (292)
36 3aad_A Transcription initiatio 99.8 8.4E-21 2.9E-25 197.8 11.3 100 146-245 172-272 (292)
37 2r0y_A Chromatin structure-rem 99.8 2.6E-20 9E-25 195.9 8.6 85 158-242 178-262 (311)
38 2r10_A Chromatin structure-rem 99.8 3.7E-20 1.3E-24 198.2 9.2 85 158-242 228-312 (361)
39 2r10_A Chromatin structure-rem 99.8 2.8E-19 9.5E-24 191.4 7.5 100 143-244 78-180 (361)
40 2r0y_A Chromatin structure-rem 99.8 5.6E-19 1.9E-23 185.8 7.8 100 143-244 28-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 3.8E-17 1.3E-21 155.1 12.9 104 141-248 5-114 (147)
42 3lqh_A Histone-lysine N-methyl 99.4 2.2E-13 7.5E-18 133.8 7.3 96 143-249 75-170 (183)
43 1dum_A Magainin 2; antibiotic, 57.1 0.36 1.2E-05 32.4 -3.8 17 435-451 4-20 (26)
44 3fke_A Polymerase cofactor VP3 21.1 25 0.00085 32.2 0.6 18 434-451 100-117 (129)
No 1
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.93 E-value=2.6e-26 Score=219.31 Aligned_cols=113 Identities=27% Similarity=0.395 Sum_probs=105.7
Q ss_pred CCChHHHHHHHHHHHHHHccCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 139 TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
.....++.+|..||+.|.+++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|++||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999988 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQDSDDSE 251 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~~eE 251 (687)
+||++++.||.+|..|++.|++.|++++.++.+.+
T Consensus 108 ~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e~~ 142 (154)
T 4alg_A 108 IYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELV 142 (154)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCBCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCCchhcccc
Confidence 99999999999999999999999999987765433
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=2.9e-26 Score=207.56 Aligned_cols=107 Identities=25% Similarity=0.353 Sum_probs=102.3
Q ss_pred CCChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 139 TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
..+..+++.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++|
T Consensus 3 ~~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 3 EDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 219 NAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
|+++|.+|.+|..|++.|++.|+++..
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998753
No 3
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=209.40 Aligned_cols=106 Identities=40% Similarity=0.609 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
..++...|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 221 PDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
++|.+|.+|..|++.|++.|++++..
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.93 E-value=9.2e-26 Score=209.00 Aligned_cols=107 Identities=32% Similarity=0.425 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHccCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 140 TTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
....++.+|..||+.|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 97 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYI 97 (127)
T ss_dssp CCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45578889999999999999999999999975 7999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
||+++|.||.+|..|++.|++.|.+++.+
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 98 YNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999998764
No 5
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=1.2e-25 Score=204.81 Aligned_cols=103 Identities=29% Similarity=0.485 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
...+.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhc
Q 005620 223 TIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~~ 245 (687)
|.|+.+|..|++.|++.|+++-.
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998754
No 6
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=9.6e-26 Score=207.55 Aligned_cols=107 Identities=22% Similarity=0.402 Sum_probs=101.6
Q ss_pred CCChHHHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005620 139 TTTLPDRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLIC 212 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIf 212 (687)
..+..+++.|..||+.|.+++ .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 456788999999999999875 57899999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 213 SNAMQYNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 213 sNA~~YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
.||++||+++|.||++|..|++.|++.+++++.
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998864
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=206.08 Aligned_cols=106 Identities=37% Similarity=0.644 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
..++++.|..||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 221 PDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
++|.+|++|..|++.|++.+..+..+
T Consensus 86 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 86 PETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987554
No 8
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=8.4e-26 Score=207.55 Aligned_cols=103 Identities=28% Similarity=0.526 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
++.+.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhc
Q 005620 223 TIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~~ 245 (687)
|.||.+|..|++.|++.+++++.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999998864
No 9
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=1.1e-25 Score=208.89 Aligned_cols=113 Identities=22% Similarity=0.436 Sum_probs=103.9
Q ss_pred CCChHHHHHHHHHHHHHHccC-------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005620 139 TTTLPDRKLLLFVLDRLQKKD-------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLI 211 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d-------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LI 211 (687)
..+..+++.|..||+.|.+++ .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 7 ~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 7 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 355678999999999999875 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 005620 212 CSNAMQYNAPDTIYFRQARSILDLAKKDFENLRQDSDDSE 251 (687)
Q Consensus 212 fsNA~~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~~eE 251 (687)
|.||++||+++|.||.+|..|++.|++.++++...++.++
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~ 126 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 9999999999999999999999999999999988776444
No 10
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=2.4e-25 Score=205.10 Aligned_cols=105 Identities=43% Similarity=0.709 Sum_probs=99.8
Q ss_pred CChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 140 TTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
...++++.|..||+.|.+++.+++|..||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||
T Consensus 10 ~~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 10 ESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp -CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 220 APDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+++|.||++|..|++.|++.|.+..
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 11
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=1.8e-25 Score=203.26 Aligned_cols=100 Identities=29% Similarity=0.449 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
++.+.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 95 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGES 95 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 005620 223 TIYFRQARSILDLAKKDFEN 242 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ek 242 (687)
|.|+.+|..|++.|++.|.+
T Consensus 96 s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 96 SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 12
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=205.45 Aligned_cols=109 Identities=31% Similarity=0.460 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 140 TTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
....|++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 220 AP-DTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 220 ~p-dS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
++ +|.||.+|..|++.|++.++++..+..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999999999876543
No 13
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=206.06 Aligned_cols=107 Identities=45% Similarity=0.697 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
..+++..|+.||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005620 221 PDTIYFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
++|.+|++|..|++.|++.|+++....
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 91 RDTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876543
No 14
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.92 E-value=9.2e-26 Score=206.34 Aligned_cols=106 Identities=33% Similarity=0.498 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHccCC---CCCCCCCCCCCC--CCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 142 LPDRKLLLFVLDRLQKKDT---YGVFSEPVDPAE--LPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~---s~pF~ePVD~~e--lPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
....+.|..||..|.+++. +++|.+|||+.. +||||++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4568899999999999887 899999999987 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
+||+++|.|+.+|..|++.|++.|.+++.++
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 9999999999999999999999999998654
No 15
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=2.5e-25 Score=204.85 Aligned_cols=105 Identities=23% Similarity=0.431 Sum_probs=99.6
Q ss_pred ChHHHHHHHHHHHHHHc------cCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005620 141 TLPDRKLLLFVLDRLQK------KDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSN 214 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k------~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsN 214 (687)
..++++.|..||+.|.+ +..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.|
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999998 455699999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 215 AMQYNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 215 A~~YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
|++||+++|.||++|..|++.|++.|+++..
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998854
No 16
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.92 E-value=2.6e-25 Score=206.71 Aligned_cols=103 Identities=35% Similarity=0.514 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHccCC---CCCCCCCCCCCC--CCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 143 PDRKLLLFVLDRLQKKDT---YGVFSEPVDPAE--LPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~---s~pF~ePVD~~e--lPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
...+.|..||+.|.+++. +++|.+|||+.. +||||++|++||||+||++||+++.|.++++|.+||+|||.||++
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 456889999999998874 789999999874 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
||+++|.||.+|..|++.|++.|.+|+.
T Consensus 102 yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 102 YNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999875
No 17
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=206.11 Aligned_cols=108 Identities=31% Similarity=0.437 Sum_probs=102.4
Q ss_pred CChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC
Q 005620 140 TTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN 219 (687)
....+++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005620 220 AP-DTIYFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 220 ~p-dS~V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
++ +|.||.+|..|++.|++.|.++..+.
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 89999999999999999999876543
No 18
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=6.3e-25 Score=205.34 Aligned_cols=105 Identities=29% Similarity=0.427 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDA--GAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~--g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
..++.|..||..|++++.+++|.+||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||++||+
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 98 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNE 98 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999998 799999999999999999999998 5999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 221 PDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
++|.||.+|..|++.|++.|+++..+..
T Consensus 99 ~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 99 PDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999977664
No 19
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.91 E-value=5.6e-25 Score=201.51 Aligned_cols=106 Identities=23% Similarity=0.432 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHHHccCC------CCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005620 140 TTLPDRKLLLFVLDRLQKKDT------YGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICS 213 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d~------s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfs 213 (687)
.+..+++.|..|++.|.+... +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 345688999999999998766 88999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 214 NAMQYNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 214 NA~~YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
||++||+++|.||++|..|++.|++.|.+++.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999865
No 20
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.91 E-value=8.9e-25 Score=199.56 Aligned_cols=106 Identities=28% Similarity=0.543 Sum_probs=99.7
Q ss_pred CChHHHHHHHHHHHHHHc-cCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 140 TTLPDRKLLLFVLDRLQK-KDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k-~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
.+..+.+.|..+|+.|.+ ++.+++|.+||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 455688999999999988 66899999999988 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
+||+++|.||.+|..|++.|++.++++.+
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 21
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=202.40 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHccCC------CCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 005620 142 LPDRKLLLFVLDRLQKKDT------YGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNA 215 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~------s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA 215 (687)
..+.+.|..+++.|.+... +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3567888999999997644 8899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 216 MQYNAPDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 216 ~~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
++||+++|.||++|..|++.|++.|+++....+
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~e 128 (130)
T 3k2j_A 96 KRYNVPNSAIYKRVLKLQQVMQAKKKELARRDD 128 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999977654
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=198.41 Aligned_cols=104 Identities=20% Similarity=0.360 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 143 PDRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
...+.|..||+.|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 84 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAK 84 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34689999999999874 488999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
+||+++|.||++|..|++.|++.++++.+.
T Consensus 85 ~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 85 SYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998653
No 23
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.91 E-value=2.3e-24 Score=208.20 Aligned_cols=106 Identities=26% Similarity=0.407 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHHHccCCCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 139 TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
.....|++.|..||+.|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999976 599999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+||+++|.|+.+|..|++.|++.|.++.
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999998875
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=199.54 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 143 PDRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
.+++.|..|++.|.++. .+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 9 ~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 88 (126)
T 3mqm_A 9 RLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAE 88 (126)
T ss_dssp HHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999865 388999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
+||+++|.+|++|..|++.|++.++++...
T Consensus 89 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 89 KYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887543
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=4.4e-24 Score=205.76 Aligned_cols=104 Identities=32% Similarity=0.480 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
....++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 221 PDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 221 pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
++|.||++|..|++.|++.|++++
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998775
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=6e-24 Score=203.96 Aligned_cols=105 Identities=27% Similarity=0.472 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHH-HHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 005620 143 PDRKLLLFVLDR-LQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221 (687)
Q Consensus 143 p~kk~L~~IL~~-L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~p 221 (687)
.+..+|..|+.. |+.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 108 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 108 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 445555555544 6678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005620 222 DTIYFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 222 dS~V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
+|.||++|..|++.|++.|.++....
T Consensus 109 ~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 109 ESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876544
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=199.52 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHccCC-------CCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Q 005620 145 RKLLLFVLDRLQKKDT-------YGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 145 kk~L~~IL~~L~k~d~-------s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
++.|..||+.|.+... +++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677788887776543 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENLRQDSDD 249 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~~ 249 (687)
||+++|.||.+|..|++.|++.|+++....+.
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~ 137 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLPDD 137 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCCCh
Confidence 99999999999999999999999999766653
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.89 E-value=5e-23 Score=191.13 Aligned_cols=99 Identities=35% Similarity=0.559 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.++.+|+.|++.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CHH----HHHHHHHHHHHHHHHH
Q 005620 223 TIY----FRQARSILDLAKKDFE 241 (687)
Q Consensus 223 S~V----~k~A~~Le~~fek~~e 241 (687)
|.+ +..|..|++.+...+.
T Consensus 90 s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 90 DPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 865 7888888888888775
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.88 E-value=8.6e-23 Score=198.98 Aligned_cols=103 Identities=30% Similarity=0.430 Sum_probs=97.7
Q ss_pred CChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhcc
Q 005620 140 TTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDA--GAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~--g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
....+++.|+.||..|.+++.+++|.+||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||++
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~ 156 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 156 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999999999996 589999999999999999999998 7999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENL 243 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl 243 (687)
||+++|.||++|..|++.|++.|+++
T Consensus 157 yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 157 FNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=5.4e-22 Score=203.88 Aligned_cols=104 Identities=26% Similarity=0.457 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 005620 142 LPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~p 221 (687)
..+...|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 92 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 222 DTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 222 dS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
+|.|+.+|..|++.|++.|+++..
T Consensus 93 ~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 93 KHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988643
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=183.03 Aligned_cols=97 Identities=34% Similarity=0.511 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC
Q 005620 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNA 220 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~ 220 (687)
...++.+|..||+.|.+++.+++|.+| +||||++|++||||+||++||+++.|.++++|..||+|||.||++||+
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 346789999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCH----HHHHHHHHHHHHHHHHHh
Q 005620 221 PDTI----YFRQARSILDLAKKDFEN 242 (687)
Q Consensus 221 pdS~----V~k~A~~Le~~fek~~ek 242 (687)
++|. |+.+|..|++.|...+.+
T Consensus 85 ~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 85 DKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 678999999999888853
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.86 E-value=3.4e-22 Score=196.64 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccC--CccCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHhcc
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIA--HPMDFATVRKKLDAG---AYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK--~PMDLsTIkkKLk~g---~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
..++.|..||+.|.+++.+++|.+||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+||++
T Consensus 76 ~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~ 151 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNK 151 (189)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999998 78999998 899999999999999 999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 218 YNAPDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 218 YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
|| +++.+|++|..|++.|++.|+++..+..
T Consensus 152 yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 152 LT-EDKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HC-CSSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99 5888999999999999999999977654
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.86 E-value=1.1e-21 Score=194.86 Aligned_cols=105 Identities=28% Similarity=0.411 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhcc
Q 005620 141 TLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDA---GAYSYLEEFEQDVFLICSNAMQ 217 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~---g~Y~S~~EF~~DV~LIfsNA~~ 217 (687)
...+++.|+.||..|.+++.+++|.+||+. .+||||+||++||||+||++||++ +.|.++++|.+||+|||.||++
T Consensus 79 s~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~ 157 (207)
T 3u5n_A 79 SPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCER 157 (207)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999987 799999999999999999999997 7999999999999999999999
Q ss_pred cCC-----------------CCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 218 YNA-----------------PDTIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 218 YN~-----------------pdS~V~k~A~~Le~~fek~~ekl~~e 246 (687)
||+ +++.|+++|..|+.+|++.|+++-.+
T Consensus 158 yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 158 FNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999 99999999999999999999998654
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.85 E-value=2e-21 Score=199.62 Aligned_cols=104 Identities=27% Similarity=0.480 Sum_probs=94.0
Q ss_pred HHHHHHHHHH-HHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 144 DRKLLLFVLD-RLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 144 ~kk~L~~IL~-~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
+...|..++. .|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4445555543 367788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcCC
Q 005620 223 TIYFRQARSILDLAKKDFENLRQDS 247 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~~e~ 247 (687)
|.||.+|..|+..|++.|.++....
T Consensus 217 s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 217 SQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=202.42 Aligned_cols=103 Identities=26% Similarity=0.458 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 005620 142 LPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAP 221 (687)
Q Consensus 142 ~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~p 221 (687)
..+...|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Q 005620 222 DTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 222 dS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+|.|+.+|..|++.|++.+.++.
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGSH
T ss_pred chHHHHHHHHHHHHHHhhhhcch
Confidence 99999999999999988877653
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=197.81 Aligned_cols=100 Identities=28% Similarity=0.520 Sum_probs=91.4
Q ss_pred HHHHHHHH-HHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q 005620 146 KLLLFVLD-RLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTI 224 (687)
Q Consensus 146 k~L~~IL~-~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~ 224 (687)
..|..++. .|+.++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++|.
T Consensus 172 ~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 172 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34444433 46778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 005620 225 YFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 225 V~k~A~~Le~~fek~~ekl~~ 245 (687)
||.+|..|++.|++.++++..
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.81 E-value=2.6e-20 Score=195.88 Aligned_cols=85 Identities=29% Similarity=0.539 Sum_probs=82.9
Q ss_pred cCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 005620 158 KDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAK 237 (687)
Q Consensus 158 ~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~fe 237 (687)
+..+++|++|||+..+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||+++|.||.+|..|++.|+
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 005620 238 KDFEN 242 (687)
Q Consensus 238 k~~ek 242 (687)
+.+++
T Consensus 258 ~~~~~ 262 (311)
T 2r0y_A 258 YLIQK 262 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=3.7e-20 Score=198.19 Aligned_cols=85 Identities=29% Similarity=0.539 Sum_probs=82.8
Q ss_pred cCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 005620 158 KDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSILDLAK 237 (687)
Q Consensus 158 ~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~Le~~fe 237 (687)
+..+++|++|||+..+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+++|.||.+|..|++.|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 005620 238 KDFEN 242 (687)
Q Consensus 238 k~~ek 242 (687)
+.|++
T Consensus 308 ~~~~~ 312 (361)
T 2r10_A 308 YLIQK 312 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.77 E-value=2.8e-19 Score=191.40 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHcc--CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhcccC
Q 005620 143 PDRKLLLFVLDRLQKK--DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYS-YLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~--d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~-S~~EF~~DV~LIfsNA~~YN 219 (687)
.+..+|..+|+.|.+. ..+++|.+||+...+||||+||++||||+||++|| ..|. ++++|+.||+|||.||++||
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 4578899999998764 45789999999999999999999999999999998 4555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 220 APDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+++|.||.+|..|+++|++.|.+.+
T Consensus 156 ~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 156 EYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999888753
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.76 E-value=5.6e-19 Score=185.81 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHcc--CCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhcccC
Q 005620 143 PDRKLLLFVLDRLQKK--DTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYS-YLEEFEQDVFLICSNAMQYN 219 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~--d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~-S~~EF~~DV~LIfsNA~~YN 219 (687)
.++.++..+|+.+.+. ..+++|.+||++..+||||+||++||||+||++|| ..|. ++++|+.||+|||.||++||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 4567777777777753 46789999999999999999999999999999999 5555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 220 APDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 220 ~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
+++|.||++|..|++.|++.|.+.+
T Consensus 106 ~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 106 EYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988753
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=155.11 Aligned_cols=104 Identities=18% Similarity=0.323 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHHHccC------CCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005620 141 TLPDRKLLLFVLDRLQKKD------TYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSN 214 (687)
Q Consensus 141 p~p~kk~L~~IL~~L~k~d------~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsN 214 (687)
....+..+..|++.|..+. .+.+|.+.++.. |+||. ++||+|.+|++||+.+.|.++++|..||.|||.|
T Consensus 5 ~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 5 TLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4456888999999999864 334899999887 89998 9999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005620 215 AMQYNAPDTIYFRQARSILDLAKKDFENLRQDSD 248 (687)
Q Consensus 215 A~~YN~pdS~V~k~A~~Le~~fek~~ekl~~e~~ 248 (687)
|++||.++|+||++|..|+.+|.+.++++....+
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999977644
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.40 E-value=2.2e-13 Score=133.76 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.++..|+.||+.|..++.+++|+.. .++.||||.+|++||+.+.|.++++|..||.|||.||..||+++
T Consensus 75 el~~~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~ 143 (183)
T 3lqh_A 75 ELQISLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQ 143 (183)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCC
Confidence 3466789999999999999999773 25999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 005620 223 TIYFRQARSILDLAKKDFENLRQDSDD 249 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~~e~~~ 249 (687)
+++.+++..|+.+|.+.|+++-.-...
T Consensus 144 ~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 144 PEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999998665543
No 43
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=57.08 E-value=0.36 Score=32.42 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=13.0
Q ss_pred hcCCCCCCCCCCccccC
Q 005620 435 SVLPLGVKFSPGWVGEN 451 (687)
Q Consensus 435 ~~lp~~~~fg~gWvge~ 451 (687)
+.|-..-+||..||||-
T Consensus 4 kylhsakkfgkawvgei 20 (26)
T 1dum_A 4 KYLHSAKKFGKAWVGEI 20 (26)
T ss_dssp STTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 44556678999999984
No 44
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=21.08 E-value=25 Score=32.16 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.0
Q ss_pred hhcCCCCCCCCCCccccC
Q 005620 434 ESVLPLGVKFSPGWVGEN 451 (687)
Q Consensus 434 ~~~lp~~~~fg~gWvge~ 451 (687)
-+.+|+|-|.|+|||--|
T Consensus 100 LR~vPp~Pki~rGWVciy 117 (129)
T 3fke_A 100 LRPVPPSPKIDRGWVCVF 117 (129)
T ss_dssp EECCCSSCCGGGTEEEEE
T ss_pred cCCCCCCCccCcceEEEE
Confidence 356899999999999654
Done!