Query 005620
Match_columns 687
No_of_seqs 369 out of 1328
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 02:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005620.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005620hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 99.9 3E-26 2.2E-30 205.3 11.7 104 143-246 3-106 (111)
2 d3d7ca1 a.29.2.1 (A:731-832) G 99.9 8E-26 5.8E-30 199.7 11.7 100 143-242 2-101 (102)
3 d1wuma1 a.29.2.1 (A:715-832) P 99.9 1.4E-25 1E-29 203.1 10.2 106 139-244 9-114 (118)
4 d1eqfa1 a.29.2.1 (A:1359-1497) 99.9 7.2E-25 5.2E-29 203.7 12.3 103 143-245 26-128 (139)
5 d3dwya1 a.29.2.1 (A:1084-1197) 99.9 5.6E-25 4.1E-29 197.8 10.6 106 140-245 3-111 (114)
6 d1eqfa2 a.29.2.1 (A:1498-1625) 99.9 2.2E-24 1.6E-28 197.9 10.3 93 153-245 20-112 (128)
7 d1co4a_ g.47.1.1 (A:) Zinc dom 13.9 26 0.0019 24.9 0.9 19 8-28 22-40 (42)
8 d1wb8a2 d.44.1.1 (A:93-208) Fe 12.9 73 0.0053 26.5 3.7 40 394-437 69-116 (116)
9 d2jb0b1 d.4.1.1 (B:449-572) DN 12.1 69 0.005 27.4 3.3 29 187-215 30-58 (124)
10 d1p7ga2 d.44.1.1 (A:104-222) F 12.1 76 0.0055 26.6 3.6 46 394-443 64-117 (119)
No 1
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.93 E-value=3e-26 Score=205.32 Aligned_cols=104 Identities=28% Similarity=0.512 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
|+.+.|..||+.|++++.+++|+.|||+..+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 3 p~~~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 82 (111)
T d1e6ia_ 3 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 82 (111)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcC
Q 005620 223 TIYFRQARSILDLAKKDFENLRQD 246 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~~e 246 (687)
|.++.+|..|++.|++.|++++..
T Consensus 83 s~i~~~A~~l~~~f~~~~~~ipe~ 106 (111)
T d1e6ia_ 83 TSYYKYANRLEKFFNNKVKEIPEY 106 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998654
No 2
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=8e-26 Score=199.69 Aligned_cols=100 Identities=27% Similarity=0.414 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.+...|..||..|.+++.+++|..||++.++||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 81 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 81 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 005620 223 TIYFRQARSILDLAKKDFEN 242 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ek 242 (687)
|.+|++|..|++.|++.+++
T Consensus 82 s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 82 SEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 3
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=1.4e-25 Score=203.05 Aligned_cols=106 Identities=24% Similarity=0.374 Sum_probs=102.0
Q ss_pred CCChHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Q 005620 139 TTTLPDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQY 218 (687)
Q Consensus 139 ~~p~p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~Y 218 (687)
..+..+...|..||+.|++++.+++|..||++..+||||++|++||||++|++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 88 (118)
T d1wuma1 9 RDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEY 88 (118)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcccCCCChhhCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHH
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 005620 219 NAPDTIYFRQARSILDLAKKDFENLR 244 (687)
Q Consensus 219 N~pdS~V~k~A~~Le~~fek~~ekl~ 244 (687)
|+++|.++.+|..|++.|.+.++++.
T Consensus 89 n~~~s~~~~~A~~l~~~f~~~~~e~~ 114 (118)
T d1wuma1 89 NPPESEYYKCANILEKFFFSKIKEAG 114 (118)
T ss_dssp SCTTSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999998864
No 4
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=7.2e-25 Score=203.68 Aligned_cols=103 Identities=26% Similarity=0.455 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 005620 143 PDRKLLLFVLDRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPD 222 (687)
Q Consensus 143 p~kk~L~~IL~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pd 222 (687)
.+..+|..||+.|+.++.+++|..|||+.++||||++|++||||.||++||+++.|.++++|.+||.|||.||++||+++
T Consensus 26 ~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 105 (139)
T d1eqfa1 26 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhc
Q 005620 223 TIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 223 S~V~k~A~~Le~~fek~~ekl~~ 245 (687)
|.|+++|..|++.|++.|+++..
T Consensus 106 s~i~~~A~~L~~~~~~~~~~~~~ 128 (139)
T d1eqfa1 106 HSLTQISQSMLDLCDEKLKEKED 128 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 5
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=5.6e-25 Score=197.83 Aligned_cols=106 Identities=29% Similarity=0.563 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHHHccC-CCCCCCCCCCCC--CCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 005620 140 TTLPDRKLLLFVLDRLQKKD-TYGVFSEPVDPA--ELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAM 216 (687)
Q Consensus 140 ~p~p~kk~L~~IL~~L~k~d-~s~pF~ePVD~~--elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~ 216 (687)
.+..+++.|..+|+.|++++ .+++|..|||+. .+||||++|++||||.+|++||+++.|.++++|.+||+|||.||+
T Consensus 3 ~p~el~~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 82 (114)
T d3dwya1 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 82 (114)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHH
Confidence 35678999999999999874 889999999976 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005620 217 QYNAPDTIYFRQARSILDLAKKDFENLRQ 245 (687)
Q Consensus 217 ~YN~pdS~V~k~A~~Le~~fek~~ekl~~ 245 (687)
.||+++|.++.+|..|++.|++.+.++.+
T Consensus 83 ~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 111 (114)
T d3dwya1 83 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 111 (114)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 6
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=2.2e-24 Score=197.92 Aligned_cols=93 Identities=29% Similarity=0.558 Sum_probs=87.7
Q ss_pred HHHHccCCCCCCCCCCCCCCCCchhhccCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHH
Q 005620 153 DRLQKKDTYGVFSEPVDPAELPDYHEIIAHPMDFATVRKKLDAGAYSYLEEFEQDVFLICSNAMQYNAPDTIYFRQARSI 232 (687)
Q Consensus 153 ~~L~k~d~s~pF~ePVD~~elPDYyeIIK~PMDLsTIkkKLk~g~Y~S~~EF~~DV~LIfsNA~~YN~pdS~V~k~A~~L 232 (687)
..|++++.+|||++|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++|.++++|..|
T Consensus 20 ~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L 99 (128)
T d1eqfa2 20 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 99 (128)
T ss_dssp HTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCChhcCCCCcccCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 005620 233 LDLAKKDFENLRQ 245 (687)
Q Consensus 233 e~~fek~~ekl~~ 245 (687)
++.|++.+.++..
T Consensus 100 ~~~~~~~l~~~~~ 112 (128)
T d1eqfa2 100 VNVCYQTLTEYDE 112 (128)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhHH
Confidence 9999999988754
No 7
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=13.87 E-value=26 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=12.0
Q ss_pred cccccCCCchhhhcccCCCCC
Q 005620 8 RMTTTSTSTATKKKKKKGRPS 28 (687)
Q Consensus 8 ~~~~~~~~~~~~~~kkkgrps 28 (687)
--.|+-.+..+ =|+||||+
T Consensus 22 ~C~H~dRpL~~--v~~kGRP~ 40 (42)
T d1co4a_ 22 QCEHNDRPLKI--LKPRGRPP 40 (42)
T ss_dssp GCCCCSSCEEE--ECSCCCCS
T ss_pred ccccCCcccEe--ecCCCCCC
Confidence 34565555544 46899997
No 8
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=12.86 E-value=73 Score=26.54 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=29.9
Q ss_pred CceeeEEEecccCcchh--------HHHHHHHHhhhChhHHHHHHHhhhhcC
Q 005620 394 GELKQLTVVGLNTEHGY--------ARSLARFASDLGPVVWNIASKKIESVL 437 (687)
Q Consensus 394 ~e~K~lv~vg~~~~~~Y--------arSlarFaa~lGp~~w~ia~~ki~~~l 437 (687)
.....|+.+.+ .||+| +.=|..|- -=|=|+++.+|++++|
T Consensus 69 ~~~~piL~lDv-WEHAYyldY~n~r~~Yi~~~~---~~iNW~~ve~rl~~~~ 116 (116)
T d1wb8a2 69 AEIPIILILDE-FEHAYYLQYKNKRADYVNAWW---NVVNWDAAEKKLQKYL 116 (116)
T ss_dssp SSCCEEEEEEC-SGGGTHHHHTTCHHHHHHHHG---GGBCHHHHHHHHHHTC
T ss_pred CCCceeeeecc-hhhhhHHHHhccHHHHHHHHH---HHcCHHHHHHHHHHhC
Confidence 34568899998 99999 22444444 3467999999999976
No 9
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=69 Score=27.44 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 005620 187 ATVRKKLDAGAYSYLEEFEQDVFLICSNA 215 (687)
Q Consensus 187 sTIkkKLk~g~Y~S~~EF~~DV~LIfsNA 215 (687)
+.|..||+...|.++++|.+.|.+-+.|.
T Consensus 30 ~qIadkLrGr~F~sFd~FR~afW~~Va~D 58 (124)
T d2jb0b1 30 DRIANKLRDKEFKSFDDFRKKFWEEVSKD 58 (124)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcC
Confidence 57999999999999999999998887764
No 10
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=12.11 E-value=76 Score=26.56 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=35.1
Q ss_pred CceeeEEEecccCcchh--------HHHHHHHHhhhChhHHHHHHHhhhhcCCCCCCC
Q 005620 394 GELKQLTVVGLNTEHGY--------ARSLARFASDLGPVVWNIASKKIESVLPLGVKF 443 (687)
Q Consensus 394 ~e~K~lv~vg~~~~~~Y--------arSlarFaa~lGp~~w~ia~~ki~~~lp~~~~f 443 (687)
.....|+.+.+ .||+| +.=|..|-. =+=|.++.+|++++|...+.+
T Consensus 64 ~~~~pll~lDv-WEHAYylDy~n~r~~Yi~~~~~---~inW~~v~~r~~~A~~~~~~~ 117 (119)
T d1p7ga2 64 ADAQVLLALDV-WEHAYYLQYKNDRGSYVDNWWN---VVNWDDVERRLQKALNGQIAL 117 (119)
T ss_dssp TTCEEEEEEEC-SGGGTHHHHTTCHHHHHHHHGG---GBCHHHHHHHHHHHHTTBCCS
T ss_pred CCCeeEEEEec-hhhhhHHhhhccHHHHHHHHHH---HcCHHHHHHHHHHHHcCCccc
Confidence 34568999998 99999 334555553 378999999999998876554
Done!