Query 005623
Match_columns 687
No_of_seqs 353 out of 817
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 02:45:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 3.6E-29 1.2E-33 232.3 14.2 114 120-233 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.6 1.1E-15 3.8E-20 144.7 10.8 97 124-230 45-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 7.9E-13 2.7E-17 117.6 9.8 92 126-228 9-100 (104)
4 1vd2_A Protein kinase C, IOTA 95.4 0.033 1.1E-06 48.9 7.0 58 570-633 4-61 (89)
5 1na6_A Ecorii, restriction end 94.7 0.041 1.4E-06 59.7 6.8 93 124-217 17-123 (404)
6 1wmh_B Partitioning defective- 93.6 0.14 4.7E-06 44.8 6.5 71 571-646 5-76 (86)
7 1q1o_A Cell division control p 92.0 0.5 1.7E-05 42.2 8.0 76 570-645 3-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 90.4 0.38 1.3E-05 43.1 5.7 62 571-636 4-80 (102)
9 2ktr_A Sequestosome-1; autopha 87.0 1 3.6E-05 41.3 6.2 61 571-636 19-95 (117)
10 1oey_A P67-PHOX, neutrophil cy 77.2 9.1 0.00031 33.1 8.0 71 573-651 6-79 (83)
11 1wj6_A KIAA0049 protein, RSGI 74.2 8.1 0.00028 34.7 7.0 64 574-646 16-79 (101)
12 1pqs_A Cell division control p 74.0 4.7 0.00016 34.3 5.3 58 587-645 5-64 (77)
13 2bkf_A Zinc-finger protein NBR 72.4 8.6 0.00029 33.7 6.6 53 574-633 8-60 (87)
14 1oey_J P40-PHOX, neutrophil cy 63.1 7.9 0.00027 34.9 4.6 51 589-663 28-78 (107)
15 3cgm_A SLYD, peptidyl-prolyl C 58.5 25 0.00086 33.1 7.5 98 206-319 3-110 (158)
16 1e8p_A Endoglucanase, dockerin 42.7 6.8 0.00023 30.5 0.7 14 619-632 19-32 (46)
17 2kfw_A FKBP-type peptidyl-prol 39.9 31 0.0011 33.8 5.1 100 206-319 3-114 (196)
18 3p8d_A Medulloblastoma antigen 39.6 39 0.0013 28.1 4.8 55 286-357 3-57 (67)
19 2k8i_A SLYD, peptidyl-prolyl C 38.4 1E+02 0.0034 29.4 8.3 100 206-319 3-114 (171)
20 2kr7_A FKBP-type peptidyl-prol 37.2 1.1E+02 0.0038 28.3 8.2 103 203-319 4-119 (151)
21 3o27_A Putative uncharacterize 31.0 38 0.0013 28.4 3.4 34 198-231 31-65 (68)
22 1mhn_A SurviVal motor neuron p 30.8 44 0.0015 26.2 3.7 29 288-319 2-30 (59)
23 3qii_A PHD finger protein 20; 30.7 59 0.002 28.3 4.7 55 287-358 19-73 (85)
24 2e63_A KIAA1787 protein; struc 29.4 34 0.0012 32.9 3.3 25 204-228 116-140 (170)
25 2jng_A Cullin-7, CUL-7; P53 bi 28.4 55 0.0019 29.5 4.2 71 278-360 10-80 (105)
26 3s6w_A Tudor domain-containing 26.8 55 0.0019 25.1 3.5 28 289-319 1-28 (54)
27 4a4f_A SurviVal of motor neuro 26.2 58 0.002 26.1 3.7 43 287-340 6-48 (64)
28 2equ_A PHD finger protein 20-l 24.2 64 0.0022 27.1 3.7 40 287-339 7-46 (74)
29 2j4m_A Endoglucanase 45A; dock 22.3 21 0.00073 31.9 0.4 14 620-633 21-34 (100)
30 4dt4_A FKBP-type 16 kDa peptid 22.1 1.7E+02 0.0058 27.9 6.7 103 205-319 24-138 (169)
31 1g5v_A SurviVal motor neuron p 21.5 78 0.0027 27.3 3.8 30 287-319 8-37 (88)
32 2yue_A Protein neuralized; str 20.9 64 0.0022 30.9 3.5 22 207-228 107-128 (168)
33 2k75_A Uncharacterized protein 20.2 1.3E+02 0.0046 26.2 5.1 46 165-230 39-88 (106)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=3.6e-29 Score=232.29 Aligned_cols=114 Identities=26% Similarity=0.451 Sum_probs=104.8
Q ss_pred CCCCceeeEEEecCccCCCCCCceEEecchhcccCCCCCCCCCCCccEEEEeeCCCCeEEEEEEEcCCCceeeecccchh
Q 005623 120 PPKQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWST 199 (687)
Q Consensus 120 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rrhlLTtGWs~ 199 (687)
..++...+|+|+||+|||++++||+||+++|+.|||.++..+..++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34567789999999999999999999999999999999987667889999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEeCC--CCcEEEEEEeccccC
Q 005623 200 FVTSKRLVAGDAFVFLRGE--NGELRVGVRRLAHQQ 233 (687)
Q Consensus 200 FV~~K~L~aGD~VvF~R~~--~G~L~VGiRRa~~~~ 233 (687)
||++|+|++||.|+|++.+ ++.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999976 457999999998764
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.62 E-value=1.1e-15 Score=144.65 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=84.9
Q ss_pred ceeeEEEecCccCCCCCCceEEecchhcccCCCCCCCCCCCccEEEEeeCCCCeEEEEEEEcCCCceeeecccchhhhcc
Q 005623 124 TVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 203 (687)
Q Consensus 124 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rrhlLTtGWs~FV~~ 203 (687)
...+|.|+||+||+.+..+|.||+++|+.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 44689999999999876689999999999999653 46888888 6999999999974 78999999999999
Q ss_pred cCCCCCCEEEEEeCCCC--cEEEEEEecc
Q 005623 204 KRLVAGDAFVFLRGENG--ELRVGVRRLA 230 (687)
Q Consensus 204 K~L~aGD~VvF~R~~~G--~L~VGiRRa~ 230 (687)
++|++||.++|...++. .+.|.|-|+.
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 99999999999987665 5888888874
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.40 E-value=7.9e-13 Score=117.57 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=79.0
Q ss_pred eeEEEecCccCCCCCCceEEecchhcccCCCCCCCCCCCccEEEEeeCCCCeEEEEEEEcCCCceeeecccchhhhcccC
Q 005623 126 HSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKR 205 (687)
Q Consensus 126 ~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rrhlLTtGWs~FV~~K~ 205 (687)
..|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++.+++ .+++|++||..||++++
T Consensus 9 p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 9 VQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp EEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 589999999994 459999999998765543 2478999999999999999874 57899999999999999
Q ss_pred CCCCCEEEEEeCCCCcEEEEEEe
Q 005623 206 LVAGDAFVFLRGENGELRVGVRR 228 (687)
Q Consensus 206 L~aGD~VvF~R~~~G~L~VGiRR 228 (687)
|++||.++|...++..+.|-|=+
T Consensus 78 L~~GD~lvF~~~~~~~f~V~If~ 100 (104)
T 1yel_A 78 LEDGKYLQFIYDRDRTFYVIIYG 100 (104)
T ss_dssp CCTTCEEEEEECSSSEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCeEEEEEEC
Confidence 99999999999888888776644
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.43 E-value=0.033 Score=48.91 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=45.5
Q ss_pred CCCCeEEEeecCceeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEe
Q 005623 570 STRTRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLA 633 (687)
Q Consensus 570 ~~~~~vKV~m~G~~igRkVDL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLV 633 (687)
++..-||++.+|.-+ .+.+..--+|++|.++|.++|.+. ....+++.|.|.|||+.-+
T Consensus 4 ~~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~----~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD----NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp SSCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC----SSCCEEEEECCSSSCCEEC
T ss_pred CCeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC----CCCeEEEEEECCCCCcccc
Confidence 445689999999754 444444569999999999999975 2566899999999998654
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.73 E-value=0.041 Score=59.69 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=65.8
Q ss_pred ceeeEEEecCccCCCCCC----ceEEecchhcccCCCCCC-CCCCCccEEEE--eeCCCCeEEEEEEEcC------CCce
Q 005623 124 TVHSFCKILTASDTSTHG----GFSVLRKHATECLPPLDM-TLATPTQELAA--KDLHGYEWRFKHIFRG------QPRR 190 (687)
Q Consensus 124 ~~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~fP~Ld~-~~~~p~q~L~~--~D~~G~~W~Fr~~yr~------~~rr 190 (687)
..+.|+|.|++.|++..| +|.+|+.....+||.|+. .+..+.+.+.+ .|...-.+.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 457899999999998774 799999767899999983 34455555543 3444455599999997 2336
Q ss_pred eeecccch-hhhcccCCCCCCEEEEEeC
Q 005623 191 HLLTTGWS-TFVTSKRLVAGDAFVFLRG 217 (687)
Q Consensus 191 hlLTtGWs-~FV~~K~L~aGD~VvF~R~ 217 (687)
|.||. |. .+.=.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88873 22 3344467789999888743
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=93.57 E-value=0.14 Score=44.79 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=51.4
Q ss_pred CCCeEEEeecCceeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEecC-CChHhHHhccc
Q 005623 571 TRTRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGD-DQWPEFCKMVK 646 (687)
Q Consensus 571 ~~~~vKV~m~G~~igRkVDL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLVGD-~PW~~F~~~vk 646 (687)
+.--||.+.+++--==.+|-+...+|++|+..|+++|.+. .-.+.|.|+|.+||++-+-+ +-..+=+.++|
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence 4456788888753222566667789999999999999853 45689999999999987753 33444445555
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.98 E-value=0.5 Score=42.18 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=55.3
Q ss_pred CCCCeEEEeecCce----ee--eeecCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEec-CCChHhHH
Q 005623 570 STRTRTKVQMQGIA----VG--RAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAG-DDQWPEFC 642 (687)
Q Consensus 570 ~~~~~vKV~m~G~~----ig--RkVDL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLVG-D~PW~~F~ 642 (687)
++..-|||+-++.. ++ |.|=+..--+|++|+.++.+=|.+.-.-.-....+|-|+|.|||+...+ |+=|++-+
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~ 82 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAK 82 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHH
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHH
Confidence 34567889887421 23 6777778889999999999999986110002446899999999997666 55788887
Q ss_pred hcc
Q 005623 643 KMV 645 (687)
Q Consensus 643 ~~v 645 (687)
.++
T Consensus 83 e~~ 85 (98)
T 1q1o_A 83 EML 85 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=90.39 E-value=0.38 Score=43.13 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCCeEEEeecCc----eeeeeecCCC-----------CCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEecC
Q 005623 571 TRTRTKVQMQGI----AVGRAVDLTA-----------LKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGD 635 (687)
Q Consensus 571 ~~~~vKV~m~G~----~igRkVDL~~-----------~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLVGD 635 (687)
...-||++..|. .-=|++-|.. ..+|++|...+.++|.-- . ..+|.|.|.|.|||+.-+.+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l---~-~~~f~l~Y~DedGDlItiSs 79 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL---R-PGGFQAHYRAERGDLVAFSS 79 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---C-SSCEEEEEECTTCCEEEECS
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc---C-CCcEEEEEECCCCCEEEecC
Confidence 356789998752 2335555532 248999999999999621 1 34699999999999877654
Q ss_pred C
Q 005623 636 D 636 (687)
Q Consensus 636 ~ 636 (687)
+
T Consensus 80 D 80 (102)
T 2kkc_A 80 D 80 (102)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=87.01 E-value=1 Score=41.34 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=43.8
Q ss_pred CCCeEEEeecCc----eeeeeecCC-----------CCCChHHHHHHHHHHHh-hccccCCCCCceEEeecCCCCeEEec
Q 005623 571 TRTRTKVQMQGI----AVGRAVDLT-----------ALKGYDDLFDELEKMFE-IQGQLRPRDKWAVVFTDDEGDMMLAG 634 (687)
Q Consensus 571 ~~~~vKV~m~G~----~igRkVDL~-----------~~~~Y~~L~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~mLVG 634 (687)
+..-||++..|. .==|++-|. .-.+|++|...+.++|. +. ..+|.|.|.|.|||+.-+.
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-----~~~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-----PGGFQAHYRAERGDLVAFS 93 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-----SSCEEEEEECTTCCEEEEC
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEEec
Confidence 456789998752 122555554 24599999999999995 43 3469999999999987665
Q ss_pred CC
Q 005623 635 DD 636 (687)
Q Consensus 635 D~ 636 (687)
.+
T Consensus 94 sD 95 (117)
T 2ktr_A 94 SD 95 (117)
T ss_dssp SH
T ss_pred CH
Confidence 43
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=77.19 E-value=9.1 Score=33.11 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred CeEEEeecCceeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeec-CCCCeEEecCCChHhHHhcc--ceEE
Q 005623 573 TRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTD-DEGDMMLAGDDQWPEFCKMV--KKIF 649 (687)
Q Consensus 573 ~~vKV~m~G~~igRkVDL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mLVGD~PW~~F~~~v--kri~ 649 (687)
.=||||-+ +--+|....=-+|.+|.+.|.+=+.+.++ .=++-|.| .+|.+++.+|.=++.-.+-| -||+
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~-----~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~Lt 77 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLE-----HTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLT 77 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGG-----GCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcc-----eeEEEeeCCCCCCeeccChHHHHHHHHhccCCcEE
Confidence 34678877 67788888888999999999998887543 22789999 68888899999999887774 4455
Q ss_pred Ee
Q 005623 650 IY 651 (687)
Q Consensus 650 I~ 651 (687)
++
T Consensus 78 L~ 79 (83)
T 1oey_A 78 LW 79 (83)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 11
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=74.19 E-value=8.1 Score=34.70 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=48.3
Q ss_pred eEEEeecCceeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEecCCChHhHHhccc
Q 005623 574 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDDQWPEFCKMVK 646 (687)
Q Consensus 574 ~vKV~m~G~~igRkVDL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLVGD~PW~~F~~~vk 646 (687)
-.||...|...==-|.-..--.+++|...+..+|++. .++|.|.|.|||-.-| .-+.+|-+.+|
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------~~~IkY~DEenD~V~i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------TIQIKYLDEENEEVSI--NSQGEYEEALK 79 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------SBCCEEECTTSCEECC--CSHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------ceEEEEecCCCCEEEE--ecHHHHHHHHH
Confidence 4799999975433464444678999999999999985 4599999999999877 45666654443
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=74.00 E-value=4.7 Score=34.35 Aligned_cols=58 Identities=17% Similarity=0.384 Sum_probs=42.8
Q ss_pred eecCCCCCChHHHHHHHHHHHhhccccCC-CCCceEEeecCCCCeEEec-CCChHhHHhcc
Q 005623 587 AVDLTALKGYDDLFDELEKMFEIQGQLRP-RDKWAVVFTDDEGDMMLAG-DDQWPEFCKMV 645 (687)
Q Consensus 587 kVDL~~~~~Y~~L~~~L~~MF~~~g~l~~-~~~~~v~Y~D~eGD~mLVG-D~PW~~F~~~v 645 (687)
.|=...--+|++|+..+.+=|.+. .... ....++-|+|.|||+...+ |+=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc-ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 334445568999999999999864 1111 3567999999999997655 56799888876
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=72.36 E-value=8.6 Score=33.66 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=41.0
Q ss_pred eEEEeecCceeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEe
Q 005623 574 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLA 633 (687)
Q Consensus 574 ~vKV~m~G~~igRkVDL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLV 633 (687)
-.||.-.|...-=-|.-..--++++|...+..+|++. .++|.|.|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------ceEEEEEcCCCCEEEE
Confidence 4689999965332353334678999999999999985 4599999999998765
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=63.05 E-value=7.9 Score=34.93 Aligned_cols=51 Identities=27% Similarity=0.454 Sum_probs=40.2
Q ss_pred cCCCCCChHHHHHHHHHHHhhccccCCCCCceEEeecCCCCeEEecCCChHhHHhccceEEEechhhhccccCCC
Q 005623 589 DLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDDQWPEFCKMVKKIFIYSTEEVKNMATSS 663 (687)
Q Consensus 589 DL~~~~~Y~~L~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mLVGD~PW~~F~~~vkri~I~~~~e~~~~~~~~ 663 (687)
||+.--.|++|+.-..+-|.- .+-.+-|.|.|||+ |+|+..+++.-|-..+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~-------~DIaLNYrD~eGDL-----------------IrilddeDv~lmi~~s 78 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR-------EDIALNYRDAEGDL-----------------VRLLSDEDVALMVRQA 78 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC-------SSEEEEEECTTSCE-----------------EECCSHHHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHhcc-------cceeeeeecCCCCE-----------------EEEcchHHHHHHHHHh
Confidence 788888999999999999983 34589999999998 5667777766554433
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=58.48 E-value=25 Score=33.13 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCCCCEEEE-EeC-CCCcEEEEEEeccccCCCCCCcccccCccccchHHHHHHHHhcCCeEEEEEecCC------C--cc
Q 005623 206 LVAGDAFVF-LRG-ENGELRVGVRRLAHQQSSMPSSVISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S--QF 275 (687)
Q Consensus 206 L~aGD~VvF-~R~-~~G~L~VGiRRa~~~~~~~p~sv~s~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s--eF 275 (687)
.+.||.|.+ |+. .+|+.+-.-+ . ... +....+-.| +.+|..-...|..++|.--|.. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-~f~-------~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-SYL-------HGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-EEE-------TTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-EEE-------ECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 568898876 332 5777665443 1 111 111122223 4667766778998998877643 1 67
Q ss_pred eeeHHHHHHHhccCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 276 IIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 276 vV~~~ky~~A~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
.|+++.+... ..|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8899888532 589999999854 4442 567899999976
No 16
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=42.70 E-value=6.8 Score=30.55 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.8
Q ss_pred ceEEeecCCCCeEE
Q 005623 619 WAVVFTDDEGDMML 632 (687)
Q Consensus 619 ~~v~Y~D~eGD~mL 632 (687)
-.|+|+|.+|||=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 36999999999954
No 17
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=39.88 E-value=31 Score=33.76 Aligned_cols=100 Identities=20% Similarity=0.202 Sum_probs=61.5
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCeEEEEEecCC------C--
Q 005623 206 LVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S-- 273 (687)
Q Consensus 206 L~aGD~VvF-~R--~~~G~L~VGiRRa~~~~~~~p~sv~-s~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s-- 273 (687)
.+.||.|.+ |+ ..+|+++-.-+.. .|...+ ....+-.| +.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999877 43 3578766433211 232222 22222223 4566666678888998876643 1
Q ss_pred cceeeHHHHHHHhccCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 274 QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 274 eFvV~~~ky~~A~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
-+.|+++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57888887742 247899999964 44442 57888888864
No 18
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.64 E-value=39 Score=28.10 Aligned_cols=55 Identities=9% Similarity=0.251 Sum_probs=39.8
Q ss_pred hccCCccCcEEEEEEecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCCCCCCCCccccCcccccc
Q 005623 286 VHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFV 357 (687)
Q Consensus 286 ~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 357 (687)
|-..|.+|+++-.++ +|- ++|-++|.+|.. + ....|..++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D~---~yYpA~I~si~~-------~--~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC---RFYPAKVTAVNK-------D--GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS---CEEEEEEEEECT-------T--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CCC---CEeeEEEEEECC-------C--CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999999 443 899999999974 2 56899999833 4455555555543
No 19
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=38.45 E-value=1e+02 Score=29.39 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=62.7
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCeEEEEEecCCC--------
Q 005623 206 LVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRTS-------- 273 (687)
Q Consensus 206 L~aGD~VvF-~R--~~~G~L~VGiRRa~~~~~~~p~sv~-s~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~s-------- 273 (687)
.+.||.|.+ |+ ..+|+.+-.-+.. .|...+ ....+-.| +.+|..-...|..++|..-|-..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568999877 44 3478776543221 122221 22222223 46677777789888888766431
Q ss_pred cceeeHHHHHHHhccCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 274 QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 274 eFvV~~~ky~~A~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
-+.|+++.|.. ...+.+||+|.+ ++++- + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 56788888853 347999999985 44443 2 6899999975
No 20
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=37.16 E-value=1.1e+02 Score=28.30 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred ccCCCCCCEEEE-Ee--CC-CCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCeEEEEEecCC-----
Q 005623 203 SKRLVAGDAFVF-LR--GE-NGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRT----- 272 (687)
Q Consensus 203 ~K~L~aGD~VvF-~R--~~-~G~L~VGiRRa~~~~~~~p~sv~-s~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~----- 272 (687)
.+..+.||.|.+ |. .. +|+.+-.-+. ..|.... ....+-.| +.+|..-...|..++|.--|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 355778999877 44 24 7876644321 1132221 12222223 4566666778888988876643
Q ss_pred -C--cceeeHHHHHHHhccCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 273 -S--QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 273 -s--eFvV~~~ky~~A~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
. -+.|+++.+ . ...+.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 1 678899888 1 3579999999854 4443 467899999976
No 21
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=30.97 E-value=38 Score=28.36 Aligned_cols=34 Identities=12% Similarity=0.364 Sum_probs=29.7
Q ss_pred hhhhcccCCCCCCEEEEEeC-CCCcEEEEEEeccc
Q 005623 198 STFVTSKRLVAGDAFVFLRG-ENGELRVGVRRLAH 231 (687)
Q Consensus 198 s~FV~~K~L~aGD~VvF~R~-~~G~L~VGiRRa~~ 231 (687)
.+++++-+|..||.|...-+ .+|++.++.+|-+.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999999875 58999999999654
No 22
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=30.78 E-value=44 Score=26.25 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.2
Q ss_pred cCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 288 HCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 288 ~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
+.|.+|+.+..+|..|. .||-++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 47999999999995443 899999999963
No 23
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.67 E-value=59 Score=28.30 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=39.8
Q ss_pred ccCCccCcEEEEEEecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCCCCCCCCccccCccccccC
Q 005623 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFVA 358 (687)
Q Consensus 287 ~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~~ 358 (687)
...|.+|+++-.++ +|- ++|-++|++|... ....|.+++.. .+.|.+=+|.|+..
T Consensus 19 ~~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCC---CEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 46899999999999 443 8999999999742 46999999943 34566656665543
No 24
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.42 E-value=34 Score=32.86 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=21.7
Q ss_pred cCCCCCCEEEEEeCCCCcEEEEEEe
Q 005623 204 KRLVAGDAFVFLRGENGELRVGVRR 228 (687)
Q Consensus 204 K~L~aGD~VvF~R~~~G~L~VGiRR 228 (687)
..|.+||.|-|++..+|+|++.|--
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEESS
T ss_pred cccCCCCEEEEEEcCCcEEEEEECC
Confidence 4678999999999999999998643
No 25
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=28.36 E-value=55 Score=29.53 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=45.9
Q ss_pred eHHHHHHHhccCCccCcEEEEEEecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCCCCCCCCccccCcccccc
Q 005623 278 GLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFV 357 (687)
Q Consensus 278 ~~~ky~~A~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 357 (687)
+++.|-.-+..+..+|||+||.=.-|+.+. -=.|++. ++. + .-| ..||.|..... +-.|+-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-Gl~-----~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-GVP-----PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-TSS-----EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-CCc-----cceeeehhcCc---eEEEEeehhhhcC
Confidence 456788888899999999999844343322 2367777 332 1 112 88999987663 4456555677665
Q ss_pred CCC
Q 005623 358 ASA 360 (687)
Q Consensus 358 ~~~ 360 (687)
.+.
T Consensus 78 ~~~ 80 (105)
T 2jng_A 78 FEE 80 (105)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 26
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=26.82 E-value=55 Score=25.14 Aligned_cols=28 Identities=4% Similarity=0.125 Sum_probs=22.5
Q ss_pred CCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 289 CFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 289 ~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
.|.+|+..-.+|..|. .||-++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995444 899999999853
No 27
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=26.23 E-value=58 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=31.6
Q ss_pred ccCCccCcEEEEEEecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCC
Q 005623 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPA 340 (687)
Q Consensus 287 ~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~~dp~wp~S~WR~L~V~WDe~~ 340 (687)
...|.+|+.+.-+|..|. +||.++|.++...+ ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995443 89999999997421 24567666543
No 28
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.23 E-value=64 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=31.8
Q ss_pred ccCCccCcEEEEEEecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCC
Q 005623 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEP 339 (687)
Q Consensus 287 ~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~~dp~wp~S~WR~L~V~WDe~ 339 (687)
...|.+|+++.-+|. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 458999999999996 43 899999999953 1 3567888765
No 29
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=22.31 E-value=21 Score=31.86 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.9
Q ss_pred eEEeecCCCCeEEe
Q 005623 620 AVVFTDDEGDMMLA 633 (687)
Q Consensus 620 ~v~Y~D~eGD~mLV 633 (687)
.|+|+|.||||=.-
T Consensus 21 ~V~YtD~dG~WGVE 34 (100)
T 2j4m_A 21 KVEYTDASGQWGVQ 34 (100)
T ss_dssp CCCEESSSCEEEEE
T ss_pred eEEEEcCCCcccee
Confidence 69999999999643
No 30
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=22.11 E-value=1.7e+02 Score=27.89 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=64.8
Q ss_pred CCCCCCEEEE-EeC--CCCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCeEEEEEecCCC-------
Q 005623 205 RLVAGDAFVF-LRG--ENGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRTS------- 273 (687)
Q Consensus 205 ~L~aGD~VvF-~R~--~~G~L~VGiRRa~~~~~~~p~sv~-s~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~s------- 273 (687)
..+.||.|.+ |+. .+|+++-.-+.. +.|...+ ....+-. -+.+|..-...|..++|..-|...
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vip-G~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSE-GLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCH-HHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccH-HHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5778999987 443 578866542211 1122221 1222222 356677777889999998776432
Q ss_pred -cceeeHHHHHHHhccCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 274 -QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 274 -eFvV~~~ky~~A~~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
=+.|+++.+.. ...+.+||+|.+ ++++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 46788887753 346899999875 44442 467899999976
No 31
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.46 E-value=78 Score=27.35 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=24.7
Q ss_pred ccCCccCcEEEEEEecCCCCCceeeeEEEeecc
Q 005623 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (687)
Q Consensus 287 ~~~w~~GmRFkM~fE~eD~~~~~~~GTIvgv~~ 319 (687)
...|.+|+.+.-+|..|. .||-++|.++..
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDF 37 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEET
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecC
Confidence 468999999999995443 899999999963
No 32
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.93 E-value=64 Score=30.86 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=19.5
Q ss_pred CCCCEEEEEeCCCCcEEEEEEe
Q 005623 207 VAGDAFVFLRGENGELRVGVRR 228 (687)
Q Consensus 207 ~aGD~VvF~R~~~G~L~VGiRR 228 (687)
..||.+.|++..+|+|++.|--
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iNg 128 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGINN 128 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEESS
T ss_pred cCCCEEEEEEcCCCEEEEEECC
Confidence 6799999999999999998843
No 33
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=20.19 E-value=1.3e+02 Score=26.16 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=33.9
Q ss_pred ccEEEEeeCCCCeEEEEEEEcCCCceeeecccchhhhcccCCCCCCEEEEEeC----CCCcEEEEEEecc
Q 005623 165 TQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRG----ENGELRVGVRRLA 230 (687)
Q Consensus 165 ~q~L~~~D~~G~~W~Fr~~yr~~~rrhlLTtGWs~FV~~K~L~aGD~VvF~R~----~~G~L~VGiRRa~ 230 (687)
...+.+-|..| +.+++.|+.. |.+||.|.+..+ =+|.+.+-+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 45799999999 5788888643 889999988743 2677777666553
Done!