Query 005624
Match_columns 687
No_of_seqs 421 out of 3034
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 11:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 7E-107 2E-111 854.8 44.5 540 105-687 1-574 (574)
2 PRK10953 cysJ sulfite reductas 100.0 6E-105 1E-109 909.2 58.8 519 102-687 59-600 (600)
3 KOG1158 NADP/FAD dependent oxi 100.0 4E-106 9E-111 902.0 45.2 568 99-687 41-645 (645)
4 TIGR01931 cysJ sulfite reducta 100.0 2E-101 5E-106 884.0 58.5 518 103-687 57-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 9.1E-99 2E-103 845.6 51.2 520 103-687 46-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 2.3E-72 4.9E-77 620.7 41.7 368 312-687 2-416 (416)
7 cd06202 Nitric_oxide_synthase 100.0 3.2E-71 7E-76 609.7 41.3 360 320-687 2-402 (406)
8 cd06207 CyPoR_like NADPH cytoc 100.0 9.2E-71 2E-75 602.8 39.6 351 320-687 2-382 (382)
9 cd06203 methionine_synthase_re 100.0 1.4E-70 3.1E-75 603.5 39.8 353 320-687 2-398 (398)
10 cd06206 bifunctional_CYPOR The 100.0 9.4E-69 2E-73 587.3 39.8 351 319-687 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 5.3E-68 1.2E-72 576.1 36.7 339 320-687 2-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 9E-68 1.9E-72 592.1 37.1 349 306-687 159-530 (530)
13 PLN03115 ferredoxin--NADP(+) r 100.0 1.6E-40 3.5E-45 358.3 29.2 273 309-687 84-367 (367)
14 PF00667 FAD_binding_1: FAD bi 100.0 2.2E-40 4.8E-45 336.0 17.7 189 309-504 2-219 (219)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3.1E-38 6.8E-43 329.6 29.9 262 320-687 2-267 (267)
16 PLN03116 ferredoxin--NADP+ red 100.0 3.8E-34 8.1E-39 304.9 29.8 274 310-687 19-307 (307)
17 cd06208 CYPOR_like_FNR These f 100.0 5.4E-34 1.2E-38 300.9 30.2 272 310-687 3-286 (286)
18 TIGR03224 benzo_boxA benzoyl-C 100.0 1E-33 2.2E-38 312.0 30.8 270 309-687 136-411 (411)
19 cd06201 SiR_like2 Cytochrome p 100.0 1.9E-33 4.2E-38 296.9 30.5 189 464-687 100-289 (289)
20 cd06200 SiR_like1 Cytochrome p 100.0 5.3E-34 1.2E-38 294.3 19.9 210 450-687 33-245 (245)
21 PRK09004 FMN-binding protein M 100.0 2.2E-33 4.8E-38 266.6 16.5 144 104-260 1-146 (146)
22 PRK05723 flavodoxin; Provision 100.0 4E-33 8.7E-38 265.7 16.5 147 105-261 1-150 (151)
23 PRK08105 flavodoxin; Provision 100.0 1.1E-32 2.4E-37 262.7 17.0 145 104-260 1-147 (149)
24 PF00258 Flavodoxin_1: Flavodo 99.9 1.7E-26 3.7E-31 218.5 9.2 138 109-252 1-143 (143)
25 PRK07308 flavodoxin; Validated 99.9 7.5E-24 1.6E-28 201.5 16.3 140 104-256 1-142 (146)
26 cd00322 FNR_like Ferredoxin re 99.9 7.7E-24 1.7E-28 214.3 14.3 187 449-657 23-213 (223)
27 PRK10926 ferredoxin-NADP reduc 99.9 1.2E-23 2.6E-28 217.7 13.5 184 450-656 32-227 (248)
28 cd06189 flavin_oxioreductase N 99.9 2.1E-23 4.6E-28 212.3 13.9 182 448-656 25-211 (224)
29 cd06188 NADH_quinone_reductase 99.9 2.3E-23 5E-28 219.7 14.3 179 464-657 86-271 (283)
30 PRK08051 fre FMN reductase; Va 99.9 5.2E-23 1.1E-27 210.8 13.8 182 449-657 30-217 (232)
31 cd06211 phenol_2-monooxygenase 99.9 6.9E-23 1.5E-27 210.5 14.7 183 449-657 36-226 (238)
32 PRK07609 CDP-6-deoxy-delta-3,4 99.9 4.7E-23 1E-27 222.8 13.8 181 449-656 132-319 (339)
33 cd06190 T4MO_e_transfer_like T 99.9 5.6E-23 1.2E-27 210.1 13.5 185 449-657 24-218 (232)
34 PRK05464 Na(+)-translocating N 99.9 5.9E-23 1.3E-27 227.3 14.6 181 462-657 208-395 (409)
35 PRK13289 bifunctional nitric o 99.9 8.6E-23 1.9E-27 225.6 15.3 183 450-657 186-380 (399)
36 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.2E-22 2.5E-27 207.4 14.4 178 449-656 31-214 (228)
37 PRK12359 flavodoxin FldB; Prov 99.9 3.6E-22 7.9E-27 193.9 17.1 144 105-263 1-171 (172)
38 TIGR01941 nqrF NADH:ubiquinone 99.9 1E-22 2.3E-27 225.1 14.9 181 462-657 204-391 (405)
39 PRK06703 flavodoxin; Provision 99.9 4.8E-22 1E-26 190.2 16.8 145 104-261 1-148 (151)
40 cd06191 FNR_iron_sulfur_bindin 99.9 1.2E-22 2.7E-27 207.5 13.6 184 450-656 29-218 (231)
41 cd06210 MMO_FAD_NAD_binding Me 99.9 2E-22 4.3E-27 206.7 14.5 182 449-656 35-222 (236)
42 cd06195 FNR1 Ferredoxin-NADP+ 99.9 2E-22 4.3E-27 207.4 14.0 185 450-657 26-223 (241)
43 PRK11872 antC anthranilate dio 99.9 2.5E-22 5.4E-27 217.1 15.2 180 449-657 137-323 (340)
44 cd06187 O2ase_reductase_like T 99.9 3.1E-22 6.8E-27 203.4 14.5 180 450-656 25-211 (224)
45 cd06212 monooxygenase_like The 99.9 2.5E-22 5.4E-27 205.4 13.8 181 450-657 31-219 (232)
46 PRK10684 HCP oxidoreductase, N 99.9 4.1E-22 9E-27 214.8 14.0 183 450-657 38-225 (332)
47 PRK08345 cytochrome-c3 hydroge 99.9 4.8E-22 1E-26 210.2 14.1 180 449-657 38-234 (289)
48 cd06194 FNR_N-term_Iron_sulfur 99.9 1.1E-21 2.4E-26 199.2 15.7 183 449-657 24-209 (222)
49 cd06216 FNR_iron_sulfur_bindin 99.9 8.6E-21 1.9E-25 195.5 21.8 165 464-656 64-231 (243)
50 KOG1160 Fe-S oxidoreductase [E 99.9 9.1E-22 2E-26 206.4 14.3 143 105-262 47-194 (601)
51 PRK05713 hypothetical protein; 99.9 1E-21 2.2E-26 210.0 14.0 175 449-656 119-295 (312)
52 cd06184 flavohem_like_fad_nad_ 99.9 1.7E-21 3.7E-26 201.1 14.3 178 450-656 38-230 (247)
53 cd06213 oxygenase_e_transfer_s 99.9 1.8E-21 3.8E-26 198.6 14.1 177 450-656 29-214 (227)
54 cd06221 sulfite_reductase_like 99.9 2E-21 4.3E-26 201.7 13.7 180 449-657 28-212 (253)
55 cd06215 FNR_iron_sulfur_bindin 99.9 2.8E-21 6.1E-26 197.3 13.8 183 450-656 29-218 (231)
56 cd06196 FNR_like_1 Ferredoxin 99.8 4.1E-21 8.9E-26 194.5 12.8 176 449-657 28-208 (218)
57 cd06214 PA_degradation_oxidore 99.8 7.6E-21 1.6E-25 195.5 13.9 186 449-657 33-228 (241)
58 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 8.7E-21 1.9E-25 206.2 13.9 186 449-657 33-229 (352)
59 cd06217 FNR_iron_sulfur_bindin 99.8 8.7E-21 1.9E-25 194.2 12.8 182 450-657 32-223 (235)
60 PRK09271 flavodoxin; Provision 99.8 2.7E-20 5.9E-25 179.9 15.5 142 105-260 1-147 (160)
61 cd06218 DHOD_e_trans FAD/NAD b 99.8 1.3E-20 2.7E-25 194.9 13.3 170 450-657 26-202 (246)
62 PRK08221 anaerobic sulfite red 99.8 1.3E-20 2.7E-25 196.8 12.9 176 450-657 34-214 (263)
63 PTZ00274 cytochrome b5 reducta 99.8 1.6E-20 3.5E-25 200.9 13.4 182 449-653 82-281 (325)
64 cd06198 FNR_like_3 NAD(P) bind 99.8 1.8E-20 3.9E-25 189.6 12.7 175 450-656 24-202 (216)
65 cd06183 cyt_b5_reduct_like Cyt 99.8 3.8E-20 8.3E-25 189.0 13.8 184 449-656 29-223 (234)
66 PRK06756 flavodoxin; Provision 99.8 1.4E-19 3E-24 172.6 16.1 137 104-253 1-137 (148)
67 TIGR02911 sulfite_red_B sulfit 99.8 3.7E-20 8E-25 193.0 12.9 176 450-657 32-212 (261)
68 COG1018 Hmp Flavodoxin reducta 99.8 6.9E-20 1.5E-24 190.4 14.4 179 450-658 36-219 (266)
69 TIGR01754 flav_RNR ribonucleot 99.8 7.4E-20 1.6E-24 172.9 13.3 136 105-256 1-139 (140)
70 TIGR01752 flav_long flavodoxin 99.8 1.6E-19 3.5E-24 175.7 15.6 140 106-260 1-166 (167)
71 cd06185 PDR_like Phthalate dio 99.8 9.6E-20 2.1E-24 183.5 13.8 172 449-657 26-198 (211)
72 PTZ00319 NADH-cytochrome B5 re 99.8 8.9E-20 1.9E-24 193.8 13.8 192 449-656 64-289 (300)
73 TIGR01753 flav_short flavodoxi 99.8 4.1E-19 9E-24 166.9 14.4 135 107-255 1-138 (140)
74 cd06197 FNR_like_2 FAD/NAD(P) 99.8 1.5E-19 3.2E-24 183.8 11.2 147 464-656 60-211 (220)
75 COG2871 NqrF Na+-transporting 99.8 2.4E-19 5.3E-24 179.7 12.2 184 464-662 211-401 (410)
76 PRK00054 dihydroorotate dehydr 99.8 2.1E-19 4.6E-24 186.1 11.7 166 449-657 32-203 (250)
77 COG0543 UbiB 2-polyprenylpheno 99.8 6.9E-19 1.5E-23 182.4 13.6 177 449-658 36-215 (252)
78 cd06220 DHOD_e_trans_like2 FAD 99.8 5.9E-19 1.3E-23 180.9 12.4 164 449-657 24-189 (233)
79 cd06192 DHOD_e_trans_like FAD/ 99.8 1.2E-18 2.7E-23 179.6 12.4 171 450-658 26-201 (243)
80 PRK06222 ferredoxin-NADP(+) re 99.8 1E-18 2.3E-23 184.1 11.1 171 450-657 29-203 (281)
81 COG0716 FldA Flavodoxins [Ener 99.8 6.9E-18 1.5E-22 161.5 15.7 143 104-259 1-150 (151)
82 cd06219 DHOD_e_trans_like1 FAD 99.8 2.3E-18 5E-23 178.2 11.6 171 449-656 27-201 (248)
83 PRK09267 flavodoxin FldA; Vali 99.8 1.5E-17 3.3E-22 162.1 16.1 142 104-260 1-167 (169)
84 PRK05802 hypothetical protein; 99.7 2.2E-18 4.8E-23 184.4 9.3 169 450-657 96-276 (320)
85 PLN02252 nitrate reductase [NA 99.7 5.8E-18 1.3E-22 201.2 13.5 193 449-656 665-877 (888)
86 PTZ00306 NADH-dependent fumara 99.7 1.8E-17 3.9E-22 204.4 13.0 186 449-657 948-1151(1167)
87 PF00175 NAD_binding_1: Oxidor 99.7 7E-17 1.5E-21 145.1 10.1 104 541-652 1-109 (109)
88 KOG0534 NADH-cytochrome b-5 re 99.7 4.5E-16 9.9E-21 161.2 16.9 160 463-649 99-267 (286)
89 COG4097 Predicted ferric reduc 99.7 2.3E-16 5E-21 164.3 13.7 164 461-657 259-423 (438)
90 PRK12778 putative bifunctional 99.6 3.9E-16 8.5E-21 185.7 11.6 170 450-656 29-202 (752)
91 cd06186 NOX_Duox_like_FAD_NADP 99.6 1.1E-15 2.4E-20 153.8 10.4 168 449-656 25-197 (210)
92 TIGR00333 nrdI ribonucleoside- 99.6 1.2E-15 2.6E-20 140.0 9.3 92 109-227 1-93 (125)
93 cd06193 siderophore_interactin 99.6 7.4E-16 1.6E-20 158.2 7.7 157 463-656 63-219 (235)
94 PRK02551 flavoprotein NrdI; Pr 99.6 4.5E-15 9.8E-20 140.8 11.4 141 104-256 1-146 (154)
95 PRK12779 putative bifunctional 99.6 6.2E-15 1.3E-19 177.6 13.8 182 449-657 677-869 (944)
96 PRK11921 metallo-beta-lactamas 99.5 4.8E-14 1E-18 155.7 13.2 146 102-259 245-392 (394)
97 PRK03600 nrdI ribonucleotide r 99.5 1E-13 2.2E-18 129.4 11.9 122 105-258 1-130 (134)
98 PRK05452 anaerobic nitric oxid 99.5 1.3E-13 2.9E-18 155.2 13.6 146 103-261 250-397 (479)
99 PRK12775 putative trifunctiona 99.5 6E-14 1.3E-18 170.5 11.5 169 450-656 29-202 (1006)
100 PRK05569 flavodoxin; Provision 99.5 3.9E-13 8.5E-18 126.9 13.0 116 104-235 1-117 (141)
101 PRK05568 flavodoxin; Provision 99.5 3.5E-13 7.6E-18 127.4 12.6 114 104-235 1-116 (142)
102 PLN02292 ferric-chelate reduct 99.3 1.3E-11 2.9E-16 143.1 12.9 176 451-643 354-546 (702)
103 PRK06242 flavodoxin; Provision 99.3 1.7E-11 3.7E-16 116.8 10.9 108 105-236 1-109 (150)
104 PLN02844 oxidoreductase/ferric 99.3 1.5E-11 3.3E-16 143.0 12.2 182 449-644 339-536 (722)
105 PLN02631 ferric-chelate reduct 99.2 1.4E-11 3E-16 142.7 9.4 147 449-611 335-492 (699)
106 PRK11104 hemG protoporphyrinog 99.1 3E-10 6.5E-15 111.6 9.3 87 105-207 1-87 (177)
107 PRK07116 flavodoxin; Provision 99.1 9E-10 2E-14 106.5 11.2 133 104-256 2-158 (160)
108 PRK03767 NAD(P)H:quinone oxido 99.0 1.9E-09 4.2E-14 108.0 13.0 126 104-233 1-141 (200)
109 TIGR01755 flav_wrbA NAD(P)H:qu 99.0 2.2E-09 4.9E-14 107.3 12.9 126 105-233 1-140 (197)
110 PF07972 Flavodoxin_NdrI: NrdI 99.0 5.8E-10 1.3E-14 101.9 7.7 115 109-252 1-120 (122)
111 COG1780 NrdI Protein involved 98.9 8.4E-09 1.8E-13 94.2 9.0 124 105-259 1-132 (141)
112 PF12724 Flavodoxin_5: Flavodo 98.8 1.7E-08 3.8E-13 95.7 10.8 86 108-209 1-86 (143)
113 COG0426 FpaA Uncharacterized f 98.8 2.1E-08 4.6E-13 107.9 10.8 116 106-235 248-363 (388)
114 KOG3378 Globins and related he 98.8 2E-09 4.4E-14 108.2 2.5 162 465-660 202-371 (385)
115 PF12641 Flavodoxin_3: Flavodo 98.6 2.3E-07 4.9E-12 89.5 9.4 96 108-227 1-98 (160)
116 PF03358 FMN_red: NADPH-depend 98.6 3.9E-07 8.5E-12 86.9 10.6 124 105-234 1-141 (152)
117 PF08030 NAD_binding_6: Ferric 98.5 3.5E-07 7.6E-12 87.5 9.9 116 538-654 3-155 (156)
118 COG4635 HemG Flavodoxin [Energ 98.5 2.9E-07 6.3E-12 86.3 6.8 111 105-231 1-114 (175)
119 PF12682 Flavodoxin_4: Flavodo 98.4 1.5E-06 3.3E-11 83.6 9.5 132 106-256 1-156 (156)
120 PRK06934 flavodoxin; Provision 98.1 2.6E-05 5.6E-10 78.9 12.7 133 106-256 61-217 (221)
121 PRK10569 NAD(P)H-dependent FMN 98.1 0.00013 2.9E-09 72.6 15.7 120 105-233 1-133 (191)
122 PRK00170 azoreductase; Reviewe 97.9 0.00029 6.3E-09 70.4 15.4 157 104-262 1-197 (201)
123 PRK01355 azoreductase; Reviewe 97.8 0.00056 1.2E-08 68.6 15.4 159 104-263 1-195 (199)
124 TIGR03567 FMN_reduc_SsuE FMN r 97.8 0.00049 1.1E-08 67.3 14.4 121 106-235 1-134 (171)
125 KOG0039 Ferric reductase, NADH 97.7 0.00019 4.1E-09 84.1 11.9 183 461-659 397-633 (646)
126 PRK09739 hypothetical protein; 97.7 0.00088 1.9E-08 67.1 15.1 157 104-263 3-197 (199)
127 TIGR03566 FMN_reduc_MsuE FMN r 97.7 0.00094 2E-08 65.4 14.3 120 106-233 1-135 (174)
128 PRK06567 putative bifunctional 97.6 0.00013 2.9E-09 87.3 8.3 82 449-550 819-907 (1028)
129 PF02525 Flavodoxin_2: Flavodo 97.6 0.0013 2.8E-08 65.7 13.8 154 105-260 1-199 (199)
130 PRK13556 azoreductase; Provisi 97.6 0.0031 6.8E-08 63.6 16.5 156 104-261 1-202 (208)
131 COG0655 WrbA Multimeric flavod 97.1 0.0045 9.7E-08 62.4 11.2 122 105-231 4-146 (207)
132 PF00970 FAD_binding_6: Oxidor 96.9 0.00045 9.8E-09 60.8 1.6 66 449-530 30-98 (99)
133 TIGR02690 resist_ArsH arsenica 96.7 0.099 2.1E-06 53.2 17.1 129 100-233 22-161 (219)
134 PRK04930 glutathione-regulated 96.4 0.18 3.8E-06 50.0 16.5 158 102-264 3-179 (184)
135 PRK13555 azoreductase; Provisi 96.3 0.22 4.7E-06 50.4 16.5 128 104-232 1-174 (208)
136 COG0431 Predicted flavoprotein 94.1 0.54 1.2E-05 46.5 11.2 122 105-234 1-135 (184)
137 PRK00871 glutathione-regulated 93.5 2 4.2E-05 42.3 13.7 152 107-262 2-169 (176)
138 COG2375 ViuB Siderophore-inter 91.8 1.9 4.1E-05 45.0 11.6 165 461-668 84-250 (265)
139 KOG3135 1,4-benzoquinone reduc 91.6 0.63 1.4E-05 44.6 7.1 130 104-239 1-146 (203)
140 COG2249 MdaB Putative NADPH-qu 88.3 9.8 0.00021 37.9 13.0 158 105-263 1-187 (189)
141 KOG0560 Sulfite reductase (fer 86.7 0.26 5.6E-06 54.4 0.8 62 203-264 1-70 (638)
142 KOG1160 Fe-S oxidoreductase [E 86.3 0.96 2.1E-05 49.7 4.8 186 57-256 314-511 (601)
143 PRK02261 methylaspartate mutas 81.1 41 0.00089 31.6 13.0 130 105-257 2-134 (137)
144 TIGR01501 MthylAspMutase methy 66.2 1.2E+02 0.0025 28.6 11.8 126 108-255 3-130 (134)
145 cd02072 Glm_B12_BD B12 binding 59.1 1.1E+02 0.0025 28.4 10.3 113 109-237 2-116 (128)
146 TIGR00640 acid_CoA_mut_C methy 56.1 89 0.0019 29.1 9.2 113 106-238 2-114 (132)
147 cd05566 PTS_IIB_galactitol PTS 54.1 41 0.00088 28.6 6.2 29 105-133 1-29 (89)
148 cd05563 PTS_IIB_ascorbate PTS_ 49.0 46 0.001 28.0 5.7 40 106-145 1-40 (86)
149 PRK10310 PTS system galactitol 44.6 40 0.00086 29.4 4.7 29 106-134 4-32 (94)
150 KOG4530 Predicted flavoprotein 41.5 72 0.0016 30.8 6.0 54 156-211 83-136 (199)
151 TIGR01917 gly_red_sel_B glycin 41.4 2.2E+02 0.0048 31.9 10.6 104 109-263 307-420 (431)
152 PF08357 SEFIR: SEFIR domain; 41.3 66 0.0014 30.1 6.0 64 105-168 1-67 (150)
153 cd00578 L-fuc_L-ara-isomerases 40.6 3.7E+02 0.0081 30.3 13.0 130 106-255 2-151 (452)
154 PF08022 FAD_binding_8: FAD-bi 38.8 10 0.00022 33.7 0.0 36 448-485 29-69 (105)
155 cd02067 B12-binding B12 bindin 37.4 3E+02 0.0065 24.5 10.1 108 109-237 2-110 (119)
156 PF00970 FAD_binding_6: Oxidor 37.4 81 0.0018 27.0 5.6 38 318-360 2-41 (99)
157 TIGR02667 moaB_proteo molybden 37.4 24 0.00053 34.1 2.4 38 196-233 2-39 (163)
158 cd05567 PTS_IIB_mannitol PTS_I 37.0 87 0.0019 26.6 5.5 40 105-144 1-40 (87)
159 TIGR00853 pts-lac PTS system, 35.9 58 0.0013 28.5 4.3 32 103-135 2-33 (95)
160 PRK15083 PTS system mannitol-s 35.6 1.6E+02 0.0035 35.1 9.3 31 103-133 377-407 (639)
161 PF08021 FAD_binding_9: Sidero 35.0 26 0.00057 31.9 2.1 54 461-529 64-117 (117)
162 PRK09548 PTS system ascorbate- 34.7 1.4E+02 0.0031 34.9 8.3 46 102-147 504-549 (602)
163 cd00133 PTS_IIB PTS_IIB: subun 34.1 69 0.0015 26.0 4.4 28 106-133 1-28 (84)
164 TIGR01918 various_sel_PB selen 33.9 2.9E+02 0.0064 31.0 10.1 77 163-263 339-420 (431)
165 cd06200 SiR_like1 Cytochrome p 33.6 64 0.0014 33.2 4.9 36 326-361 8-44 (245)
166 PF04689 S1FA: DNA binding pro 33.5 61 0.0013 26.2 3.5 25 55-79 18-43 (69)
167 PF03908 Sec20: Sec20; InterP 33.3 41 0.00089 29.2 2.9 18 59-76 74-91 (92)
168 COG3414 SgaB Phosphotransferas 32.3 1.3E+02 0.0028 26.4 5.8 58 104-170 1-58 (93)
169 PRK05907 hypothetical protein; 31.4 5.2E+02 0.011 27.7 11.6 126 106-261 19-151 (311)
170 PRK09622 porA pyruvate flavodo 30.9 3.1E+02 0.0067 30.7 10.1 110 103-223 267-382 (407)
171 PRK05928 hemD uroporphyrinogen 30.5 2.5E+02 0.0055 28.1 8.8 55 156-233 49-103 (249)
172 COG1182 AcpD Acyl carrier prot 29.6 6E+02 0.013 25.6 13.1 128 104-232 1-171 (202)
173 PF06283 ThuA: Trehalose utili 29.4 1.6E+02 0.0034 29.5 6.9 75 106-188 1-80 (217)
174 COG4123 Predicted O-methyltran 29.3 2E+02 0.0043 30.0 7.5 21 536-556 45-65 (248)
175 PRK13608 diacylglycerol glucos 29.2 90 0.002 34.4 5.5 42 102-143 3-45 (391)
176 COG2185 Sbm Methylmalonyl-CoA 27.9 4E+02 0.0086 25.4 8.6 110 105-237 13-123 (143)
177 cd05564 PTS_IIB_chitobiose_lic 25.9 1.1E+02 0.0023 26.8 4.3 86 106-215 1-86 (96)
178 PRK09590 celB cellobiose phosp 25.9 1E+02 0.0023 27.5 4.2 31 104-135 1-31 (104)
179 PRK07168 bifunctional uroporph 25.1 1.9E+02 0.004 33.2 7.1 89 120-232 261-351 (474)
180 PRK13609 diacylglycerol glucos 25.1 1.1E+02 0.0024 33.2 5.3 32 103-134 3-34 (380)
181 cd00758 MoCF_BD MoCF_BD: molyb 24.9 44 0.00096 30.9 1.8 53 200-252 1-55 (133)
182 cd06578 HemD Uroporphyrinogen- 24.8 3.3E+02 0.0071 26.9 8.3 51 163-235 176-226 (239)
183 cd06212 monooxygenase_like The 24.1 1.5E+02 0.0032 29.9 5.6 40 317-361 2-42 (232)
184 PF02826 2-Hacid_dh_C: D-isome 23.1 1.2E+02 0.0026 29.5 4.5 33 193-233 31-63 (178)
185 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.6 3E+02 0.0065 25.3 7.1 71 107-188 17-87 (153)
186 PHA03164 hypothetical protein; 22.5 2.4E+02 0.0051 23.7 5.2 25 43-67 45-73 (88)
187 cd01075 NAD_bind_Leu_Phe_Val_D 22.4 1.2E+02 0.0026 30.3 4.4 33 193-233 23-55 (200)
188 cd02071 MM_CoA_mut_B12_BD meth 22.3 5.8E+02 0.013 23.0 9.1 110 109-239 2-112 (122)
189 cd07363 45_DOPA_Dioxygenase Th 21.9 3.4E+02 0.0073 28.1 7.8 81 119-211 80-163 (253)
190 cd07371 2A5CPDO_AB The alpha a 21.9 4.5E+02 0.0098 27.5 8.8 104 118-228 86-205 (268)
191 COG1587 HemD Uroporphyrinogen- 21.2 2.7E+02 0.0058 28.6 6.9 55 157-234 173-227 (248)
192 PRK05752 uroporphyrinogen-III 20.9 5.2E+02 0.011 26.5 9.0 56 155-234 51-106 (255)
193 PF02878 PGM_PMM_I: Phosphoglu 20.7 2.8E+02 0.006 25.6 6.3 62 104-170 40-101 (137)
194 cd07373 2A5CPDO_A The alpha su 20.3 3.7E+02 0.008 28.2 7.8 86 118-211 89-179 (271)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=7.2e-107 Score=854.81 Aligned_cols=540 Identities=34% Similarity=0.608 Sum_probs=466.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
++|+|+||||||||+.+|+.|.+++.+++. .+.|+.+|+|++ ++|.+..++||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~--~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRGL--QCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhccC--CceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 579999999999999999999999998874 467899999996 578899999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHHHh
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 262 (687)
+|...+.+...|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||+. +++..|..|...||..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99988888889999999999999999999999999999999999999999999999954 7999999999999999998
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccc--cCCCCeeEEEeeeecccCCCCCCceEEEEE
Q 005624 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVY--DAQHPCRSNVAVRKELHTPSSDRSCTHLEF 340 (687)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~a~v~~~~~L~~~~~~r~~~hle~ 340 (687)
+.....+......+ ....+.|++-...... . + ..+..+. ..+-| ++++.|+++|+.++.+.++|++|
T Consensus 153 i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~-~-----~--~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F 221 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-VQITTKYSLLELGKAS-D-----F--SDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEF 221 (574)
T ss_pred hcCCCCCcccCCCc-ccccchhhhhhccccc-c-----C--Ccchhhhccccccc--cchhcceeecCcchhheeeEEEE
Confidence 77511110000011 1122334433222210 0 0 0011111 11222 78999999999999999999999
Q ss_pred eecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcC
Q 005624 341 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLS 419 (687)
Q Consensus 341 di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~ 419 (687)
+|.++.+.|+|||++.|+|.|+.+.|+++++.+||++++...+.....+. .+..+-+| |+|+++++++|+|+++
T Consensus 222 ~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~S 296 (574)
T KOG1159|consen 222 DIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNS 296 (574)
T ss_pred ecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999998877665433221 11122577 9999999999999999
Q ss_pred CCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCC
Q 005624 420 SPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISS 471 (687)
Q Consensus 420 ~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsS 471 (687)
.|++ |+|.+|+.+++||++|+|++|+|.+.|++++++. +|.++||+|||||
T Consensus 297 vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas 375 (574)
T KOG1159|consen 297 VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIAS 375 (574)
T ss_pred CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeecc
Confidence 9997 7899999999999999999999999999999985 5999999999999
Q ss_pred CCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhH
Q 005624 472 SPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPF 551 (687)
Q Consensus 472 sp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPf 551 (687)
+|..+ .++++|++|.++|.....+.|+||+||+++.+++ .+++.+++|++.+|.+.+.|+||||||||||||
T Consensus 376 ~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPf 447 (574)
T KOG1159|consen 376 SPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPF 447 (574)
T ss_pred CCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccH
Confidence 99754 3999999999999999999999999999999977 479999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcc
Q 005624 552 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML 631 (687)
Q Consensus 552 rsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i 631 (687)
||++++|..++. .+..||||||++++||+|++||....+.+. +.|||||++.|+||||+|++.++.||+++
T Consensus 448 Ra~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll 518 (574)
T KOG1159|consen 448 RALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLL 518 (574)
T ss_pred HHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHH
Confidence 999999987542 456999999999999999999999887653 44999999999999999999999999998
Q ss_pred -cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 632 -SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 632 -~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+.||+|||||++..|..+|..+|.+|+.+.++.+.+.|. |++.|++++||+.|+|
T Consensus 519 ~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 519 DNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 599999999999999999999999999999999776666 9999999999999999
No 2
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=5.7e-105 Score=909.20 Aligned_cols=519 Identities=29% Similarity=0.517 Sum_probs=451.5
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..+++|+|+|||||||||.+|++|++.+.+.+ ..++++++++|++ .+|.+++.+||++||||+|+|||||..
T Consensus 59 ~~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~ 130 (600)
T PRK10953 59 AEMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVA 130 (600)
T ss_pred CCCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHH
Confidence 34788999999999999999999999998876 4468899999985 458889999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
||+||.... ...|.+++||||||||++|++||.++|.+|++|+++||+|+++++.+|. +.+++|+.|.+++|++|.
T Consensus 131 F~~~L~~~~--~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~ 206 (600)
T PRK10953 131 LHKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALK 206 (600)
T ss_pred HHHHHhhCc--CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHH
Confidence 999997543 3469999999999999999999999999999999999999999987654 479999999999999998
Q ss_pred hhhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEe
Q 005624 262 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 341 (687)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~d 341 (687)
+...... ...... . . .... ......|+..+|+.|+|+.|++|+.++++|+|+|||||
T Consensus 207 ~~~~~~~----~~~~~~---~--~----~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~d 263 (600)
T PRK10953 207 SRAPAVA----APSQSV---A--T----GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEID 263 (600)
T ss_pred hhcCCcc----cccccc---c--c----cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEe
Confidence 7653110 000000 0 0 0000 00112466789999999999999999999999999999
Q ss_pred ecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCC
Q 005624 342 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSP 421 (687)
Q Consensus 342 i~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p 421 (687)
|++++++|+|||||+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.++
T Consensus 264 l~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~~ 326 (600)
T PRK10953 264 LGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVNT 326 (600)
T ss_pred cCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999998876631 1468999999999999875
Q ss_pred Ch---------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeE
Q 005624 422 KK---------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRI 480 (687)
Q Consensus 422 ~k---------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i 480 (687)
+. +.+.+|+ ..++++|||++|| .++++++|++. +|+++||+|||||+|...++++
T Consensus 327 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~--~~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~~~~~~v 402 (600)
T PRK10953 327 ANIVENYATLTRSETLLPLVGDKAALQHYA--ATTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQAEVENEV 402 (600)
T ss_pred HHHHHHHHHhCCCHHHHHHhcCHHHHHHHh--cCCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCCCCCCeE
Confidence 43 3344454 4699999999998 68999999975 5899999999999998778999
Q ss_pred EEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee-CCcccCCCCCCCeEEEecCCcchhHHHHHHHH
Q 005624 481 HVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQER 558 (687)
Q Consensus 481 ~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r 558 (687)
||+|+++.+.. .|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||||+|+|
T Consensus 403 ~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r 475 (600)
T PRK10953 403 HITVGVVRYDI-EGRARAGGASSFLADRLEEEG------EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQR 475 (600)
T ss_pred EEEEEEEEeec-CCCCcCceEhhhhhhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHH
Confidence 99999887763 688899999999986 55544 57888875 58999988899999999999999999999999
Q ss_pred HHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEE
Q 005624 559 FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLY 638 (687)
Q Consensus 559 ~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iY 638 (687)
...+. .+++|||||||++..||+|++||++|.++|.++++++||||++.+|+||||+|.++++++|+++.+|++||
T Consensus 476 ~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~Y 551 (600)
T PRK10953 476 AADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIY 551 (600)
T ss_pred HHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEE
Confidence 76542 37899999999977799999999999999999999999999988899999999999999999999999999
Q ss_pred EECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 639 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 639 vCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 552 VCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 552 VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred EECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9999878999999999999999999999999999999999999999999
No 3
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.2e-106 Score=901.95 Aligned_cols=568 Identities=47% Similarity=0.809 Sum_probs=484.0
Q ss_pred ccccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCch
Q 005624 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (687)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdn 178 (687)
.....+.+++|+|+|||||||.+|+.+++.+ +++....+.+.|.+.++.+ ....+++|+.+|||+|+||||
T Consensus 41 ~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~dn 111 (645)
T KOG1158|consen 41 KVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPDN 111 (645)
T ss_pred HhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCcc
Confidence 4456788999999999999999999999999 7775444455555555531 456899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
++.|..||.+.... ....++|+|||+||++|+|||++|+.+|++|+++||+|++.+|+||++.+.|++|..|++.+|+
T Consensus 112 ~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~ 189 (645)
T KOG1158|consen 112 AEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLP 189 (645)
T ss_pred HHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhH
Confidence 99999999986433 3445899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCccccccceEEEEecC-CCcccC-ccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceE
Q 005624 259 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN-ADASVG-EKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCT 336 (687)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~ 336 (687)
++++.+..+... .++.....+.++...... ...... .......+...+++..+|+.+.++.+++|+++.++|+|+
T Consensus 190 ~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~ 266 (645)
T KOG1158|consen 190 ELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCI 266 (645)
T ss_pred hhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEE
Confidence 999887644221 111111111122111100 000000 000011222356788999999999999999888999999
Q ss_pred EEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCC-cCCCCCCCCCCC-cCcHHHHHHHh
Q 005624 337 HLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGT-PLGKSTLPPTFP-PCSLRTALTKY 414 (687)
Q Consensus 337 hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~-~l~~~~~~~~~p-p~tl~~~l~~y 414 (687)
|+++++.+.+++|+||||++|+|.|..+.|++++++|+++++..+.++....+++ +. ....++|+| |||+|++|++|
T Consensus 267 ~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~t~~~~l~~~ 345 (645)
T KOG1158|consen 267 HLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPT-PAKKPHPFPLPTTLRTALTHY 345 (645)
T ss_pred EEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCC-ccccCCCCCCCCcHHHHHHHh
Confidence 9999999999999999999999999999999999999999988877776544322 22 235678998 99999999999
Q ss_pred hhhcCCCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccc
Q 005624 415 ADLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466 (687)
Q Consensus 415 ~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~ 466 (687)
+||+++|+| .+|..|+....+|++|||.+||+++||+.++++. +|+++||+
T Consensus 346 ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~ 424 (645)
T KOG1158|consen 346 LDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRY 424 (645)
T ss_pred ccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-Cccccccc
Confidence 999999998 6789999999999999999999999999888874 69999999
Q ss_pred cccCCCCCCCCCeEEEEEEEEEeeCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEecC
Q 005624 467 YSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 545 (687)
Q Consensus 467 YSIsSsp~~~~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~G 545 (687)
|||||||..+++++|+++.++.+.++.| +.++|+||+||+++.+++... .++.++.+.|+||.|+.+||||||+|
T Consensus 425 YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpG 500 (645)
T KOG1158|consen 425 YSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPG 500 (645)
T ss_pred cccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCC
Confidence 9999999999999999999999888876 778899999999999987632 14777889999999999999999999
Q ss_pred CcchhHHHHHHHHHHhhhcCC--CCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC-CCccccchhhhc
Q 005624 546 TGLAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMME 622 (687)
Q Consensus 546 TGIAPfrsflq~r~~~~~~~~--~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~-~~k~yVq~~l~e 622 (687)
|||||||||+|+|..+++.+. ..+ +|||||||+++.||||++||+++.+.+.++++.+||||++ +.|.||||+|++
T Consensus 501 TGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e 579 (645)
T KOG1158|consen 501 TGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLRE 579 (645)
T ss_pred CcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHH
Confidence 999999999999999876542 234 8999999999999999999999999999999999999998 789999999999
Q ss_pred chHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 623 KSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 623 ~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++++||++| +++|+||||||+++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 580 ~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 580 YADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 999999999 56999999999888999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=2.3e-101 Score=883.97 Aligned_cols=518 Identities=35% Similarity=0.629 Sum_probs=451.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+++|+|+|||||||||.+|+.|++++.+.+ ..+++.++++|+. +++.+++.+||++||||+|+||+||..|
T Consensus 57 ~~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F 128 (597)
T TIGR01931 57 QEKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISF 128 (597)
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHH
Confidence 3678999999999999999999999998876 4568999999985 4588899999999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
++||...+ .+.|++++||||||||++|++||.++|.+|++|+++||+|++|++.+|. +.+++|+.|.+++|+.|.+
T Consensus 129 ~~~L~~~~--~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~ 204 (597)
T TIGR01931 129 HKFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNE 204 (597)
T ss_pred HHHHHhCC--CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHh
Confidence 99998643 3469999999999999999999999999999999999999999998775 4789999999999999986
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEee
Q 005624 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (687)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (687)
.+... ... +.+.+. ... .......|+..+|+.|+|+.|++|+..+++++|+||||||
T Consensus 205 ~~~~~-----~~~------~~~~~~--~~~----------~~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l 261 (597)
T TIGR01931 205 QAKGS-----AST------PSLSET--PAR----------SQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDL 261 (597)
T ss_pred hccCc-----cCC------Ccceec--ccc----------cccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEec
Confidence 54211 001 111110 000 0011234667899999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCC
Q 005624 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (687)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~ 422 (687)
++++++|+|||||+|||+|+++.|+++|++||+++++.+++. + +++|++++|++|+||+.+++
T Consensus 262 ~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~~~ 324 (597)
T TIGR01931 262 EGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQNTK 324 (597)
T ss_pred CCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCCCCH
Confidence 999999999999999999999999999999999999887653 1 15799999999999998653
Q ss_pred h---------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEE
Q 005624 423 K---------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIH 481 (687)
Q Consensus 423 k---------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~ 481 (687)
. +.|.+|+. +++++|||.+|| +++++|||+++ +|+++||+|||||+|...+++++
T Consensus 325 ~~l~~la~~~~~~~l~~~~~~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~~~~~l~ 400 (597)
T TIGR01931 325 PLLKAYAELTGNKELKALIADNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSEVGDEVH 400 (597)
T ss_pred HHHHHHHHhcCCHHHHHHhcCHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcccCCCEEE
Confidence 2 34566663 789999999999 89999999975 58899999999999987788999
Q ss_pred EEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHH
Q 005624 482 VTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERF 559 (687)
Q Consensus 482 itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~ 559 (687)
|+|++|.+. ..|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||||+|+|.
T Consensus 401 ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~ 473 (597)
T TIGR01931 401 LTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERA 473 (597)
T ss_pred EEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHH
Confidence 999988765 4678899999999998 66654 57888865 579999888899999999999999999999997
Q ss_pred HhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEE
Q 005624 560 ALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYV 639 (687)
Q Consensus 560 ~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYv 639 (687)
..+. .++++||||||++..|++|++||+++.+++.++++++||||++..|+||||+|.++.+++|+++.++++|||
T Consensus 474 ~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYv 549 (597)
T TIGR01931 474 EDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYV 549 (597)
T ss_pred HccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEE
Confidence 6542 378999999999656999999999999999998999999998778999999999999999998888999999
Q ss_pred ECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 640 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 640 CG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 550 CG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 550 CGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred ECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 996689999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-99 Score=845.59 Aligned_cols=520 Identities=38% Similarity=0.677 Sum_probs=457.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+..++|+||||||||+.+|+.+++++...+ ..+.+.++++|++. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 6788999999999999999999999999887 45788999999963 344446899999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
+++|... +...|.+++|+||||||++|++||.++|.++++|.++||+++.+++.+|+. +++++...|...+++.+..
T Consensus 118 ~~~l~~~--~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGK--KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhccc--ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 9999864 355799999999999999999999999999999999999999999999875 7789999999999998887
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEee
Q 005624 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (687)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (687)
........ ...++. .+. . ...+....|+.+.+..|++|+..+++|+|+|++||+
T Consensus 195 ~~~~~~~~--~~~~~~--~~~---------------------~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAA--PAQVAT--SPQ---------------------S-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccc--cccccc--hhc---------------------c-cccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 65322110 000000 000 0 122334567789999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCC
Q 005624 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (687)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~ 422 (687)
++++++|+|||+|+|||+|+++.|++++..||+++++.++++ -.+.++.++|.+|+|+++.|+
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~~~~~~~~~l~~~~e~~~~~~ 311 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------GETLPLVEALKSHFEFTSAPK 311 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------CCcchHHHHHHHheecccchH
Confidence 999999999999999999999999999999999998666331 116789999999999999993
Q ss_pred h-----------hHHHHHHH----------hcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEE
Q 005624 423 K-----------DEYAQWIV----------ASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIH 481 (687)
Q Consensus 423 k-----------~~y~~~i~----------~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~ 481 (687)
. +++.+++. ..+++++|+|.+||++++|+++|++. +|+++||+|||||+|..+++++|
T Consensus 312 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~~~~~~vh 390 (587)
T COG0369 312 SLLENLAHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPGVSPDEVH 390 (587)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhhhHHHHhhhccccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCCCCCCeEE
Confidence 2 22222222 34799999999999999999999975 59999999999999999999999
Q ss_pred EEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-CcccCCCCCCCeEEEecCCcchhHHHHHHHHHH
Q 005624 482 VTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 560 (687)
Q Consensus 482 itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~-~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~ 560 (687)
+||.+|.+... ++.+.|+||+||+++...++ .++|+++.+ +|++|.++.+||||||+||||||||||+|+|..
T Consensus 391 ltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~ 464 (587)
T COG0369 391 LTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAA 464 (587)
T ss_pred EEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHh
Confidence 99999988877 55899999999999988443 589999866 899999999999999999999999999999998
Q ss_pred hhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEE
Q 005624 561 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 640 (687)
Q Consensus 561 ~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvC 640 (687)
.+.. |++|||||||+.+.||||++||++|.+.|.++++.+||||++.+|.||||+|++++++||+++++||+||||
T Consensus 465 ~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVC 540 (587)
T COG0369 465 NGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVC 540 (587)
T ss_pred cccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEe
Confidence 7644 589999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 641 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 641 G~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
||++.|+++|+++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 541 Gd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 541 GDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 98899999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=2.3e-72 Score=620.67 Aligned_cols=368 Identities=52% Similarity=0.950 Sum_probs=327.7
Q ss_pred CCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC-CCceEEEeeCCCCC
Q 005624 312 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 390 (687)
Q Consensus 312 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~-~d~~~~i~~~~~~~ 390 (687)
..+|+.|+|+.+++|+++ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 357899999999999988 8999999999998889999999999999999999999999999999 899888864332
Q ss_pred CcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh---------------------------hHHHHHHHhcCCCHHHHHH
Q 005624 391 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK---------------------------DEYAQWIVASQRSLLEVMS 442 (687)
Q Consensus 391 ~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k---------------------------~~y~~~i~~~~~~l~dvl~ 442 (687)
....+.|+| |+|++++|++|+||+++|++ ++|.+|+...++|++|+|.
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLASEGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHhcCHHHHHHHHhhcCCCHHHHHH
Confidence 123356788 99999999999999999987 3477888889999999999
Q ss_pred hCCCCC---CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCC------
Q 005624 443 EFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK------ 513 (687)
Q Consensus 443 ~fps~~---~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~------ 513 (687)
+||+++ +|++.|++. +|+++||+|||||+|..++++++|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~-lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIEL-LPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHh-CccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 999999975 5999999999999998888999999999999888889999999999999874110
Q ss_pred ---------CCCCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCccc
Q 005624 514 ---------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 584 (687)
Q Consensus 514 ---------~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ 584 (687)
...++.++++++.|.|.+|.++.+|+||||+||||||||||++++......+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00123688999999999998888999999999999999999999876543333357999999999985599
Q ss_pred ccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCC
Q 005624 585 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 664 (687)
Q Consensus 585 ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~ 664 (687)
+|++||++|.+.+.+++++++|||++..++|||++|.++.+.+++++.++++||||||+..|+++|.++|.+|+++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~ 393 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGM 393 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCCC
Confidence 99999999999888889999999988789999999999888999888778999999994449999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005624 665 DSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 665 ~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+.++|++|+++|+++|||++|||
T Consensus 394 ~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 394 TETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CHHHHHHHHHHHHHcCCeeEecC
Confidence 99999999999999999999999
No 7
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=3.2e-71 Score=609.68 Aligned_cols=360 Identities=42% Similarity=0.758 Sum_probs=313.4
Q ss_pred EeeeecccCCCCCCceEEEEEeecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCceEEEeeCCCCCCcCC--
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 394 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~l~-- 394 (687)
|+.+++|++++++|+|+||+||+++ ++++|+|||||+|+|+|+++.|++++++||+. .++.+.++..........
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999987 69999999999999999999999999999984 477787775333221100
Q ss_pred CCCCCCCCC-cCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCCHHHHHHhCCCC
Q 005624 395 KSTLPPTFP-PCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRSLLEVMSEFPSA 447 (687)
Q Consensus 395 ~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~l~dvl~~fps~ 447 (687)
....++++| |+|++++|++|+||+++|++ ++|.+|+...++|++|+|.+||++
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~dvL~~f~s~ 161 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGKGSSEYEDWKWYKNPNILEVLEEFPSL 161 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHhccCCCHHHHHHhCCcC
Confidence 011234555 99999999999999999987 357888889999999999999999
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
++|++.|++. +|+++||+|||||+|..+++.++++|+++.+.++. |+.+.|+||+||+++.+|+ .++|+++
T Consensus 162 ~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~~ 234 (406)
T cd06202 162 QVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCFVR 234 (406)
T ss_pred CCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEEEe
Confidence 9999999975 59999999999999987789999999998776553 4567899999999988865 4777877
Q ss_pred e-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh----hcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCc
Q 005624 526 Q-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 600 (687)
Q Consensus 526 ~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~----~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~ 600 (687)
. +.|++|.++.+|+||||+||||||||||||+|.... ..+...++++||||||+++.|++|++||+++.+.+.++
T Consensus 235 ~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~ 314 (406)
T cd06202 235 SAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLT 314 (406)
T ss_pred eCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCc
Confidence 4 579999888899999999999999999999986542 12234589999999999966999999999999999998
Q ss_pred EEEEEEecCCC-CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005624 601 QLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQM 678 (687)
Q Consensus 601 ~l~~afSr~~~-~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~ 678 (687)
++++||||++. .++||||+|.++.+.+|+++ ..+++|||||| +.|+++|+++|.+|++++++++.++|++|+++|++
T Consensus 315 ~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l~~ 393 (406)
T cd06202 315 EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRD 393 (406)
T ss_pred eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999864 68999999999999999987 68999999999 58999999999999999999999999999999999
Q ss_pred CCCeEEeeC
Q 005624 679 TGRYLRDVW 687 (687)
Q Consensus 679 ~gRy~~Dvw 687 (687)
+|||++|||
T Consensus 394 ~gRy~~dvw 402 (406)
T cd06202 394 ENRYHEDIF 402 (406)
T ss_pred cCCeEEEec
Confidence 999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=9.2e-71 Score=602.78 Aligned_cols=351 Identities=44% Similarity=0.812 Sum_probs=314.7
Q ss_pred EeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~ 399 (687)
|+.|++|++++++++|+||+|++++++++|+|||||+|+|+|+++.|++++++||+++++.+.++..+. .+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~-------~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ-------QRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc-------cccC
Confidence 567899999999999999999998889999999999999999999999999999999999998875331 1335
Q ss_pred CCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCC
Q 005624 400 PTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPP 450 (687)
Q Consensus 400 ~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p 450 (687)
.|+| |+|++++|++|+||+++|++ ++|.+| .+++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6788 99999999999999999988 123333 689999999999999999
Q ss_pred hHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcc
Q 005624 451 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 530 (687)
Q Consensus 451 ~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~ 530 (687)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++.+|+ .+.|+++.|.|+
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999985 599999999999999877789999999998888888889999999999887765 578888889999
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC
Q 005624 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 610 (687)
Q Consensus 531 lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~ 610 (687)
+|.++.+|+||||+||||||||||++++......+...++++||||||+++.|++|++||+++.+.+.++++++||||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99888899999999999999999999998654334445899999999999559999999999999999889999999998
Q ss_pred CCccccchhhhcchHHHHhcccCC-cEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 611 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 611 ~~k~yVq~~l~e~~~~v~~~i~~~-~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
..++||||++.++.+.+++++.++ ++||||||+..|+++|+++|.++++++++++.++|++++++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999989999888655 49999999434999999999999999999999999999999999999999999
No 9
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=1.4e-70 Score=603.46 Aligned_cols=353 Identities=39% Similarity=0.726 Sum_probs=312.8
Q ss_pred EeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCceEEEeeCCCCCCcCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 397 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~l~~~~ 397 (687)
|..+++||+++++++|+||+||++++++.|+|||||+|+|+|+++.|++++++||++ +|+.+.++.....+. .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 677899999999999999999998889999999999999999999999999999999 888888874222111 1124
Q ss_pred CCCCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCC
Q 005624 398 LPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAK 448 (687)
Q Consensus 398 ~~~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~ 448 (687)
++.+|| |+|++++|++|+||+++|++ ++|.+|+...++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 677889 99999999999999999987 4588899999999999999999999
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccC-----CCCCCCCCceeeEE
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 523 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~-----~~~~~~~~~~~~v~ 523 (687)
+|++.+++. +|+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +|+ .+++.
T Consensus 160 ~pl~~ll~~-lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEH-LPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHh-CccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 999999975 599999999999999877899999998885432 699999999987 554 47787
Q ss_pred Ee-eCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhh--cCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCC
Q 005624 524 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 599 (687)
Q Consensus 524 v~-~~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~--~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~ 599 (687)
++ .+.|.+|.+ +.+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++||+++.+.|.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 75 567999877 67999999999999999999999976431 123358999999999995599999999999999999
Q ss_pred cEEEEEEecCCC---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005624 600 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 675 (687)
Q Consensus 600 ~~l~~afSr~~~---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 675 (687)
+++++||||++. .++||||+|.++.+++++++ ..+++||||||++.|+++|+++|.+|++++++++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999876 58999999999999999987 57899999999789999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 005624 676 LQMTGRYLRDVW 687 (687)
Q Consensus 676 l~~~gRy~~Dvw 687 (687)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=9.4e-69 Score=587.32 Aligned_cols=351 Identities=36% Similarity=0.643 Sum_probs=310.4
Q ss_pred EEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCC
Q 005624 319 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (687)
Q Consensus 319 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~ 398 (687)
+|+.+++|++++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||+++++.+.++..+. ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 36789999999999999999999975 8999999999999999999999999999999999998875221 23
Q ss_pred CCCCC-cCcHHHHHHHhhhhcCCCCh------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHH
Q 005624 399 PPTFP-PCSLRTALTKYADLLSSPKK------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGV 453 (687)
Q Consensus 399 ~~~~p-p~tl~~~l~~y~Dl~~~p~k------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~ 453 (687)
+.|+| |+|++++|++|+||+++|+| ++|.+++...++|++|+|.+||++++|+++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~~~~~ 151 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAGEAYAAEVLAKRVSVLDLLERFPSIALPLAT 151 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhhhHHHHHHHhcCCCHHHHHHhCCCCCCCHHH
Confidence 45677 99999999999999999987 457788888999999999999999999999
Q ss_pred HHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEe--eCCcc
Q 005624 454 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFK 530 (687)
Q Consensus 454 ~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~--~~~F~ 530 (687)
|++. +|+++||+|||||+|..+++.++++|+++.+.++.+ +.+.|+||+||.++.+|+ .+.++++ .|.|.
T Consensus 152 ~l~~-~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~g~F~ 224 (384)
T cd06206 152 FLAM-LPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSHSAFR 224 (384)
T ss_pred HHHh-CcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCCCccC
Confidence 9976 499999999999999877789999999887766555 567899999999887765 3566554 47899
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC
Q 005624 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 610 (687)
Q Consensus 531 lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~ 610 (687)
+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||+++++.+.+ +++++|||++
T Consensus 225 l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~Sr~~ 303 (384)
T cd06206 225 PPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAYSRPP 303 (384)
T ss_pred CCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEecccC
Confidence 998778999999999999999999999976543333457899999999995599999999999986655 8999999987
Q ss_pred CC-ccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCeEEe
Q 005624 611 PT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGRYLRD 685 (687)
Q Consensus 611 ~~-k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~gRy~~D 685 (687)
.. ++|||++|.++.+.+++++.++++|||||| ++|+++|.++|.+|+.+++ +++.++|++++++|+++|||++|
T Consensus 304 ~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry~~d 382 (384)
T cd06206 304 GGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATD 382 (384)
T ss_pred CCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCeeee
Confidence 54 899999999988899988878899999999 6699999999999999999 99999999999999999999999
Q ss_pred eC
Q 005624 686 VW 687 (687)
Q Consensus 686 vw 687 (687)
||
T Consensus 383 vw 384 (384)
T cd06206 383 VF 384 (384)
T ss_pred cC
Confidence 99
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=5.3e-68 Score=576.08 Aligned_cols=339 Identities=41% Similarity=0.689 Sum_probs=298.1
Q ss_pred EeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~ 399 (687)
|+.|++|++++++++|+||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------------- 65 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------------- 65 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC----------------
Confidence 6788999999999999999999998899999999999999999999999999999999876531
Q ss_pred CCCC-cCcHHHHHHHhhhhcCCCChhHHHHH----------------HHhcCCCHHHHHHhCC--CCCCChHHHHHHHcC
Q 005624 400 PTFP-PCSLRTALTKYADLLSSPKKDEYAQW----------------IVASQRSLLEVMSEFP--SAKPPLGVFFAAIVP 460 (687)
Q Consensus 400 ~~~p-p~tl~~~l~~y~Dl~~~p~k~~y~~~----------------i~~~~~~l~dvl~~fp--s~~~p~~~~l~~~~p 460 (687)
++| |+|++++|++|+||+++ .+..+..+ .....++++|+|++|| ++++|+|||++. +|
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~~l~~~~~~~~~~~~~~~d~L~~f~~~~~~~~~gq~l~l-~~ 142 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL-LLALLESYAADTGALELLALAALEAVLAFAELRDVLDLLPIPPARLTAEELLDL-LR 142 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC-hHHHHHHhcCCcchHHHHhhcCHHHHHccCcHHHHHHhccccCCCCCHHHHHHh-Cc
Confidence 234 79999999999999987 33111110 1235689999999999 999999999975 59
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee-CCcccCCCCCCCe
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPI 539 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~-~~F~lp~~~~~Pi 539 (687)
+++||+|||||+|..++++++++|+++.+.+. ++.+.|+||+||+++.+.|+ .+.++++. +.|++|.++.+|+
T Consensus 143 ~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~~~F~lp~~~~~pi 216 (360)
T cd06199 143 PLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPNPHFRLPEDPDAPI 216 (360)
T ss_pred CCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecCCCcCCCCCCCCCE
Confidence 99999999999998778899999998876653 56788999999998763333 57788765 5799998888999
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchh
Q 005624 540 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 619 (687)
Q Consensus 540 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~ 619 (687)
||||+||||||||||+|++..... .++++||||||++..|++|++||+++.+.+.++++++||||++..++||||+
T Consensus 217 ImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr~~~~~~yVq~~ 292 (360)
T cd06199 217 IMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSRDQAEKVYVQDR 292 (360)
T ss_pred EEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEccCCCCCccHHHH
Confidence 999999999999999999876432 3789999999998569999999999999998889999999998888999999
Q ss_pred hhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 620 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 620 l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++++++|+++|||++|||
T Consensus 293 l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 293 MREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred HHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99999999998877899999999549999999999999999999999999999999999999999999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=9e-68 Score=592.06 Aligned_cols=349 Identities=38% Similarity=0.671 Sum_probs=306.7
Q ss_pred CCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEee
Q 005624 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 385 (687)
Q Consensus 306 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~ 385 (687)
+...|+.++|+.++|+.+++|++++++++|+||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 4445678899999999999999999999999999999988999999999999999999999999999999986432
Q ss_pred CCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCCh----------hHHHHH-----------HHhcCCCHHHHHHhC
Q 005624 386 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----------DEYAQW-----------IVASQRSLLEVMSEF 444 (687)
Q Consensus 386 ~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k----------~~y~~~-----------i~~~~~~l~dvl~~f 444 (687)
.++|++++|++|+||.++|++ ++..+. ......+++|+|++|
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p~~~~~~la~~~~~~~~~~l~~L~~~~~~~~~~~~~~vldvL~~f 297 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAPDGLFELLSYITGGAARKKARALAAGEDPDGDAATLDVLAALEKF 297 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCCHHHHHHHHHhCCcHHHHHHHHhhcccChhhhhhhCcHHHHHHhC
Confidence 257999999999999998754 000111 112347899999999
Q ss_pred CCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005624 445 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 523 (687)
Q Consensus 445 ps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~ 523 (687)
|++++|+++|++. +|+++||+|||||+|..++++++|+|++|.+.+ .++.+.|+||+||.+ +.+|+ .+.|+
T Consensus 298 p~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd------~V~v~ 369 (530)
T PRK06214 298 PGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT------RVRVY 369 (530)
T ss_pred CCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC------EEEEE
Confidence 9999999999975 599999999999999877889999999887653 567789999999985 55544 47777
Q ss_pred EeeC-CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 524 VRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 524 v~~~-~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
++.+ +|++|.++.+|+||||+||||||||||+|+|..... .++++||||||+...|++|++||+++.+.+.++++
T Consensus 370 i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l 445 (530)
T PRK06214 370 VQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRL 445 (530)
T ss_pred ecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEE
Confidence 7643 499998888999999999999999999999876542 27899999998876799999999999999998889
Q ss_pred EEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Q 005624 603 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 682 (687)
Q Consensus 603 ~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy 682 (687)
+++|||++..|+||||+|.++..++|+++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||
T Consensus 446 ~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY 525 (530)
T PRK06214 446 SLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525 (530)
T ss_pred EEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence 99999998889999999999999999998889999999997789999999999999999999999999999999999999
Q ss_pred EEeeC
Q 005624 683 LRDVW 687 (687)
Q Consensus 683 ~~Dvw 687 (687)
++|||
T Consensus 526 ~~Dvw 530 (530)
T PRK06214 526 QADVY 530 (530)
T ss_pred EEecC
Confidence 99999
No 13
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.6e-40 Score=358.29 Aligned_cols=273 Identities=24% Similarity=0.461 Sum_probs=225.9
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.++|+.|.+++..+....++||+|+..+ .+.|++|.+++|.|+... .
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------~ 138 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------K 138 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC------------------------C
Confidence 477899999999999999988888899999999764 799999999999754210 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+| .+..+|+||
T Consensus 139 ~g---------------------------------------------------------------------~p~~~R~YS 149 (367)
T PLN03115 139 NG---------------------------------------------------------------------KPHKLRLYS 149 (367)
T ss_pred CC---------------------------------------------------------------------CcCceeeee
Confidence 00 112469999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCc-ccCCCCCCCeEEEec
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF-KLPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImIa~ 544 (687)
|||+|.. .++.++|+|+.+.+.+..|....|+||+||+++.+|+ .+.|..+.|.| .+|.++.+|+||||+
T Consensus 150 IAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd------~V~v~GP~G~~fllp~~~~~~iImIAg 223 (367)
T PLN03115 150 IASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------EVKITGPVGKEMLMPKDPNATIIMLAT 223 (367)
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC------EEEEEeecCCceeCCcCCCCCEEEEeC
Confidence 9999853 2468999998876766677878999999999988876 36677776765 456667789999999
Q ss_pred CCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||+|||+++....... ...++++||||||+.+ |++|.+||+++++... +++++.+|||++. .++|||+
T Consensus 224 GTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd 302 (367)
T PLN03115 224 GTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT 302 (367)
T ss_pred CeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh
Confidence 999999999999876543211 1136899999999996 9999999999998754 7799999999864 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+|.++.+++|+++. .+++|||||| ++|+++|.++|.+++...| + ++++++++|+++|||+.|||
T Consensus 303 ~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 303 RMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cHHHHHHHHHHCCCeEEecC
Confidence 99999999998884 5789999999 9999999999999999874 4 57889999999999999998
No 14
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=2.2e-40 Score=336.01 Aligned_cols=189 Identities=43% Similarity=0.846 Sum_probs=156.6
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
+|+.++|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||||||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhcCCCHHH
Q 005624 389 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQRSLLE 439 (687)
Q Consensus 389 ~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~d 439 (687)
. .....|+| |+|++++|++|+||+++|+| ++|.+|+...+++++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 23466888 99999999999999999987 5788888889999999
Q ss_pred HHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchh
Q 005624 440 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 504 (687)
Q Consensus 440 vl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~ 504 (687)
+|.+||++++|+++|++. +|+++||+|||||||..++++++|||++|.+.+..|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999975 5999999999999999999999999999999899999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=3.1e-38 Score=329.61 Aligned_cols=262 Identities=49% Similarity=0.895 Sum_probs=223.2
Q ss_pred EeeeecccCCCCCCceEEEEEeecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~ 398 (687)
+++++.+++|+|.++++|++|++++ ..+.|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~------------------------------------- 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN------------------------------------- 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC-------------------------------------
Confidence 4568899999999999999999875 67899999998774221
Q ss_pred CCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCC
Q 005624 399 PPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478 (687)
Q Consensus 399 ~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~ 478 (687)
...+|+|||||.|....+
T Consensus 45 --------------------------------------------------------------~~~~R~ySias~p~~~~~ 62 (267)
T cd06182 45 --------------------------------------------------------------PLQPRYYSIASSPDVDPG 62 (267)
T ss_pred --------------------------------------------------------------CCCCeeEeecCCCCCCCC
Confidence 123699999999975568
Q ss_pred eEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-CcccCCCCCCCeEEEecCCcchhHHHHHHH
Q 005624 479 RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQE 557 (687)
Q Consensus 479 ~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~-~F~lp~~~~~PiImIa~GTGIAPfrsflq~ 557 (687)
.++|+|+.+.+....+..+.|.+|+||+++.+|+ .+.+..+.| .|.++.+...|+||||+|||||||++++++
T Consensus 63 ~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~ 136 (267)
T cd06182 63 EVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQE 136 (267)
T ss_pred EEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHH
Confidence 8999998876666666777899999999987765 466777777 899987777899999999999999999999
Q ss_pred HHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-ccccchhhhcchHHHHhcccCCcE
Q 005624 558 RFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAY 636 (687)
Q Consensus 558 r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~-k~yVq~~l~e~~~~v~~~i~~~~~ 636 (687)
++.....+...++++||||+|+++.|++|.+||+++++.+.++++++++||+... ++||++.+.+..+.+++.+.+++.
T Consensus 137 ~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~ 216 (267)
T cd06182 137 RAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAH 216 (267)
T ss_pred HHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHHhcCCE
Confidence 8764211222378999999999933999999999999988888999999997653 789999998887777777766779
Q ss_pred EEEECCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 637 LYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 637 iYvCG~a~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|||||| +. |+++|.++|.++++++++++.++|++++++|++.|||++|+|
T Consensus 217 vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 217 IYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred EEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 999999 77 999999999999999999999999999999999999999999
No 16
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=3.8e-34 Score=304.85 Aligned_cols=274 Identities=27% Similarity=0.446 Sum_probs=213.0
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~ 389 (687)
|....|+.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++... . + .+
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~~~--~-----------------~---~~ 75 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPGTN--P-----------------K---KP 75 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCCCC--h-----------------h---hc
Confidence 4456788999999999987777778999999975 4789999999988644210 0 0 00
Q ss_pred CCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCccccccc
Q 005624 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSI 469 (687)
Q Consensus 390 ~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSI 469 (687)
| .+...|+|||
T Consensus 76 g---------------------------------------------------------------------~~~~~R~YSI 86 (307)
T PLN03116 76 G---------------------------------------------------------------------APHNVRLYSI 86 (307)
T ss_pred C---------------------------------------------------------------------CcCCceeEEe
Confidence 0 1123699999
Q ss_pred CCCCCCC---CCeEEEEEEEEEeeCCC-C--c-cccCccchhhcccCCCCCCCCCceeeEEEeeCCccc-CC-CCCCCeE
Q 005624 470 SSSPRVA---PSRIHVTCALVYEKTPT-G--R-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA-DAKVPII 540 (687)
Q Consensus 470 sSsp~~~---~~~i~itv~~v~~~~~~-g--~-~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~l-p~-~~~~PiI 540 (687)
||+|... ..+++|+|+.+.+..+. + . ...|++|+||+++.+|+ .+.|..+.|.|.+ |. +..+|+|
T Consensus 87 aS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~~~~~~~v 160 (307)
T PLN03116 87 ASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEEDPNATHI 160 (307)
T ss_pred cCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCCCCCCcEE
Confidence 9999532 23799999876443331 1 1 25799999999976665 4667777788876 43 5568999
Q ss_pred EEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Ccc
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKE 614 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~ 614 (687)
|||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+||++|++.+. .++++.++||+.. .++
T Consensus 161 lIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g 239 (307)
T PLN03116 161 MVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKM 239 (307)
T ss_pred EEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCcc
Confidence 999999999999999988764321 11236899999999997 9999999999998875 6789999999753 367
Q ss_pred ccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 615 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 615 yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
||++.|.+..+.++..+..++.+|+||| ++|+++|.++|.+++++.| + +|+++++.|+++|||++|+|
T Consensus 240 ~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 240 YVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEERG-E---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred chhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---cHHHHHHHHHHcCceEEecC
Confidence 9999998877776666656789999999 9999999999999988864 4 36689999999999999999
No 17
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=5.4e-34 Score=300.88 Aligned_cols=272 Identities=29% Similarity=0.479 Sum_probs=213.9
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~ 389 (687)
|-...|+.+.|+..+.++.+.+...+++++|+. +..+.|+||.++.|.++.... .
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~~~~~-----------------------~- 57 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPPGTDA-----------------------K- 57 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECCCcch-----------------------h-
Confidence 345667789999999998766667899999997 457899999999886431100 0
Q ss_pred CCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCccccccc
Q 005624 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSI 469 (687)
Q Consensus 390 ~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSI 469 (687)
--++..+|+|||
T Consensus 58 --------------------------------------------------------------------~g~~~~~R~YSI 69 (286)
T cd06208 58 --------------------------------------------------------------------NGKPHKLRLYSI 69 (286)
T ss_pred --------------------------------------------------------------------cCCCCCceeeEe
Confidence 002234699999
Q ss_pred CCCCCCC---CCeEEEEEEEEEeeCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEeeCCccc-CCCCCCCeEEEec
Q 005624 470 SSSPRVA---PSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PADAKVPIIMIGP 544 (687)
Q Consensus 470 sSsp~~~---~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~l-p~~~~~PiImIa~ 544 (687)
||+|... ++.++|+|+.+...++.+ ..+.|++|+||+++.+|+ .+.|..+.|+|.+ |.+..+|+||||+
T Consensus 70 as~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIag 143 (286)
T cd06208 70 ASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD------DVQITGPVGKTMLLPEDPNATLIMIAT 143 (286)
T ss_pred cCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC------EEEEEeecCCcccCCCCCCCCEEEEec
Confidence 9998642 468999998876544432 456799999999987765 4667777787665 4455679999999
Q ss_pred CCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||++|++++...... ....++++||||+|+++ |++|.+||+++.++.. ++++++++||++. .++||++
T Consensus 144 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~ 222 (286)
T cd06208 144 GTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQD 222 (286)
T ss_pred CccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhh
Confidence 99999999999998765211 11236899999999997 9999999999998753 6789999999753 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.+.+..+.+++.+. .+..||+||| ++|+++|.+.|.+++. +..+|++++++|+++|||..|+|
T Consensus 223 ~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 223 RIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcCCeEEecC
Confidence 99987777777664 4469999999 8999999999999997 23579999999999999999999
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1e-33 Score=312.01 Aligned_cols=270 Identities=23% Similarity=0.412 Sum_probs=215.6
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.++|+.+++++..+....++||.|+.++..+.|+||.++.|.++... .
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------~ 191 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------A 191 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC------------------------c
Confidence 4677899999999999998776677899999998766789999999998653210 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ .+..+|+||
T Consensus 192 ~g---------------------------------------------------------------------~~~~~R~YS 202 (411)
T TIGR03224 192 SG---------------------------------------------------------------------KPHYARMYS 202 (411)
T ss_pred CC---------------------------------------------------------------------CcCcceeee
Confidence 00 112369999
Q ss_pred cCCCCCCC---CCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC-cccCCCCCCCeEEEec
Q 005624 469 ISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~~---~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~-F~lp~~~~~PiImIa~ 544 (687)
|+|+|... .+.++|+|+.+. ....|+.+.|.+|+||+++.+|+ .+.|..+.|. |.+|..+.+|+||||+
T Consensus 203 Ias~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd------~v~v~GP~G~~f~lp~~~~~~lllIag 275 (411)
T TIGR03224 203 VASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD------KVQVIGPFGSTFLMPNHPESSIMMICT 275 (411)
T ss_pred ecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC------EEEEEeccCCcccCCCCCCCCEEEEec
Confidence 99987421 147999998774 24566778899999999988766 4666667665 6677655689999999
Q ss_pred CCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC-CCccccchhhhcc
Q 005624 545 GTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEK 623 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~-~~k~yVq~~l~e~ 623 (687)
|||||||++|++++......+ ..++++||||+|+.+ |++|.+||+++.+.. .+++++|||+. ..++|||+.+.+.
T Consensus 276 GtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~--~~~~~~~sr~~~~~~g~V~d~l~~~ 351 (411)
T TIGR03224 276 GTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF--IDINFAFSRTPEQPKRYVQDAIRER 351 (411)
T ss_pred ccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC--ceEEEEeccCCccCcccHhhHHHHh
Confidence 999999999999987643221 237999999999997 999999999998654 35778999964 3689999999988
Q ss_pred hHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 624 SSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 624 ~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.+.+++++. .++.||+||| ++|+++|.+.|.++..+. ++. +++++++|+++|||+.|+|
T Consensus 352 ~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 352 AADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEPRLRAEGRLHLETY 411 (411)
T ss_pred HHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHHHHHHCCCeEEecC
Confidence 888887774 4689999999 999999999999999765 343 4679999999999999999
No 19
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.9e-33 Score=296.93 Aligned_cols=189 Identities=34% Similarity=0.689 Sum_probs=158.5
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe-eCCcccCCCCCCCeEEE
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMI 542 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~-~~~F~lp~~~~~PiImI 542 (687)
+|+|||+|+|. .+.++|+|+.+ ..|.||+||+++.+|+ .+.+.++ .+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcC------EEEEEeccCCCccCC-CCCCCEEEE
Confidence 59999999984 46788887632 4599999999987765 3556553 5789876 447899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 622 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e 622 (687)
|+|||||||++|++++.. .++++||||+|+++.|.+|++||+++.+++.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998558999999999999888888999999975 48999999988
Q ss_pred chHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 623 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 623 ~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+.+ + -+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77777776767899999999 8999999999999998764 2 3888999999999998
No 20
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=5.3e-34 Score=294.35 Aligned_cols=210 Identities=33% Similarity=0.551 Sum_probs=172.2
Q ss_pred ChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe-eC
Q 005624 450 PLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QS 527 (687)
Q Consensus 450 p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~-~~ 527 (687)
-+|||+.+..+. ..+|+|||||+|. ++.++|+|+.+.. +.| ..|.||+||++....++ .+.|..+ ++
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~Gd-----~v~i~gp~gg 101 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIGA-----SVALRLRENP 101 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CCC--CCeeechhhhhCCCCCC-----EEEEEecCCC
Confidence 478988655342 5789999999985 4789988876522 112 35999999998643333 4667665 45
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.+|. ..+|+||||+|||||||+||++++.... .++++||||||+.+.|++|.+||++|.+.+.++++++++|
T Consensus 102 ~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s 175 (245)
T cd06200 102 GFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFS 175 (245)
T ss_pred cccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEEc
Confidence 788875 5689999999999999999999987543 2578999999998548999999999999998889999999
Q ss_pred cCCCCccccchhhhcchHHHHhcccCCcEEEEECCch-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEee
Q 005624 608 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 686 (687)
Q Consensus 608 r~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dv 686 (687)
|++..++|||+.+.++.+.+++++..+++||+||| + +|+++|.+.|.+++++. .+++|+++|||++|+
T Consensus 176 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d~ 244 (245)
T cd06200 176 RDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRDV 244 (245)
T ss_pred cCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEec
Confidence 98767899999999887777776666789999999 6 99999999999999763 488999999999999
Q ss_pred C
Q 005624 687 W 687 (687)
Q Consensus 687 w 687 (687)
|
T Consensus 245 ~ 245 (245)
T cd06200 245 Y 245 (245)
T ss_pred C
Confidence 9
No 21
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=2.2e-33 Score=266.56 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=127.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|+|+|||||||||.+|++|++.+.+.+. .++++++.+ + +++.+++.+||++||||+|+||+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~--~~~~~~~~~--~------~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGF--STETLHGPL--L------DDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCC--ceEEeccCC--H------HHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 5689999999999999999999999987763 456666543 2 35778899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (687)
+||++. ...|++++||||||||+.|++||.+++.++++|+++||+++.|++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~---~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ---KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc---CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999864 235999999999999999999999999999999999999999999999864 36899999999988753
No 22
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=4e-33 Score=265.75 Aligned_cols=147 Identities=22% Similarity=0.224 Sum_probs=122.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
++|.|+|||||||||.+|++|++.+.+.+. .+.++ .....++ .... ..+.+||++||||+|+||+|+..|++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~--~~~~~--~~~~~~~---~~~~-~~~~li~~~sT~G~Ge~Pd~~~~f~~ 72 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGF--EAWHN--PRASLQD---LQAF-APEALLAVTSTTGMGELPDNLMPLYS 72 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCC--ceeec--CcCCHhH---HHhC-CCCeEEEEECCCCCCCCchhHHHHHH
Confidence 579999999999999999999999987653 22322 2222211 1111 23789999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCC--CCcHHhHHHHHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 261 (687)
||.+.. ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .+.|++|.+|++.+|++|.
T Consensus 73 ~L~~~~--~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 73 AIRDQL--PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHHhcC--ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 998642 1269999999999999999 8999999999999999999999999999987 4689999999999998773
No 23
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=1.1e-32 Score=262.66 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|.|+|||||||||.+|++|++.+.+.+ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998775 4567888876542 12345689999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (687)
++|++. ...|++++||||||||++|++||.++++++++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~---~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT---AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc---CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999853 236999999999999999999999999999999999999999999999855 478999999999 7654
No 24
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.93 E-value=1.7e-26 Score=218.47 Aligned_cols=138 Identities=38% Similarity=0.618 Sum_probs=121.3
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH-HHHHHHH
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~-~F~~~L~ 187 (687)
|+|+|+|||||.+|+.|++.|.+++ ..++++++++++.+ ...+..+++++|++||||+|+||+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999875 56789999998842 236788999999999999999999998 6666766
Q ss_pred hhc--CCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHH
Q 005624 188 EQK--EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 252 (687)
Q Consensus 188 ~~~--~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W 252 (687)
... .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 431 12346899999999999999988999999999999999999999999999976 789999999
No 25
>PRK07308 flavodoxin; Validated
Probab=99.91 E-value=7.5e-24 Score=201.54 Aligned_cols=140 Identities=24% Similarity=0.285 Sum_probs=117.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.++++.+. ..+.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 457999999999999999999999998765 3467888887764 34778899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCC--cHHhHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 256 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~--~e~~f~~W~~~l 256 (687)
++|.+. .+++++|+|||+||+.|+|||.+++.++++|.++||+++.+....+...+ ..+...+|.++|
T Consensus 73 ~~l~~~-----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADL-----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcC-----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 999763 48899999999999999999999999999999999999988776655432 233445565554
No 26
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.91 E-value=7.7e-24 Score=214.32 Aligned_cols=187 Identities=27% Similarity=0.463 Sum_probs=142.6
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.|..+
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~gP 86 (223)
T cd00322 23 FKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSGP 86 (223)
T ss_pred cCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEECC
Confidence 3578888655553 56899999999863 36788888654 2589999999986655 4666667
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|+|.++.+..+|+||||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+++.+.+..++++++
T Consensus 87 ~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (223)
T cd00322 87 GGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVLA 161 (223)
T ss_pred CcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEE
Confidence 7888766566789999999999999999999987653 126899999999997 99999999999998777889999
Q ss_pred EecCCCCccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++|+.....+.++.+..+........ ..+..+|+||| ++|++.+.+.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99876544444433321111111111 35789999999 89999999988654
No 27
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.90 E-value=1.2e-23 Score=217.66 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=134.3
Q ss_pred ChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
-+|||+.+.++ . ...|+|||+|+|. .+.++++++.+ ..|.+|+||+++.+|+ .+.|..+.
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp~ 94 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSEA 94 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecCC
Confidence 46888754332 2 2359999999985 34688777644 3589999999877765 35565554
Q ss_pred -CCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEE
Q 005624 527 -SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 603 (687)
Q Consensus 527 -~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~ 603 (687)
+.|.++.. ..+|+||||+|||||||+++++++...+. .++++||||+|+.+ |++|.+||+++++.. ..++++
T Consensus 95 ~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~ 169 (248)
T PRK10926 95 AGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRIQ 169 (248)
T ss_pred CcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC----CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEEE
Confidence 55667644 34799999999999999999999754332 26899999999996 999999999998875 356899
Q ss_pred EEEecCCC---Cccccchhhhcch-HHHHh-cc-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 604 VAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~---~k~yVq~~l~e~~-~~v~~-~i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++||++. .+++|++.+.+.. ..... .+ ..+..+|+||| ++|++++.+.|.+
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~ 227 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKE 227 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHH
Confidence 99998653 2567877654321 11111 12 35689999999 8999999887765
No 28
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.90 E-value=2.1e-23 Score=212.27 Aligned_cols=182 Identities=20% Similarity=0.324 Sum_probs=142.1
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
+..+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+ ..|.+|++|.+ +.+|+ .+.|..+.
T Consensus 25 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06189 25 DFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPL 88 (224)
T ss_pred ccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCC
Confidence 3457888865556667899999999853 46788887643 35888999876 66655 35666667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+...++||||+|||||||++++++...... ..+++|+||+|+.. |++|.+||+++.+.+.+++++.++
T Consensus 89 G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 163 (224)
T cd06189 89 GDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS----KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVL 163 (224)
T ss_pred ccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC----CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEe
Confidence 8888876667899999999999999999999876431 26899999999996 999999999999887777888899
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
|++.+ .++||++.+.+... + ..+..+|+||| ++|++++.+.|.+
T Consensus 164 s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~ 211 (224)
T cd06189 164 SEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVE 211 (224)
T ss_pred CCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHH
Confidence 98543 45788877654311 1 24678999999 8999999988864
No 29
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.90 E-value=2.3e-23 Score=219.66 Aligned_cols=179 Identities=17% Similarity=0.339 Sum_probs=135.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEe
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 543 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa 543 (687)
.|+|||+|+|.. .+.++|+|+.........+...|.+|+||.++.+|+ .+.|..+.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 499999999863 468998886543211111345799999999977765 356666778898863 468999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccccc
Q 005624 544 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQ 617 (687)
Q Consensus 544 ~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~yVq 617 (687)
+|||||||++++++++..... ..+++||||+|+.+ |.+|.+||+++++++..+++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~~---~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLKS---KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999997654321 25899999999986 99999999999988777788889898531 357888
Q ss_pred hhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 618 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 618 ~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 8775542 11111 23568999999 99999999988754
No 30
>PRK08051 fre FMN reductase; Validated
Probab=99.89 E-value=5.2e-23 Score=210.78 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=137.2
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhh-cccCCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L-~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|..|+++ .++.+|+ .+.|..+.|
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~G 93 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPHG 93 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCCC
Confidence 357888765456667899999999853 46788877643 124445555 5566654 466767778
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|.++.+..+|+||||+||||||+++++++...... ..+++|+||+|+.+ |.+|.+||+++++++..++++.++|
T Consensus 94 ~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~----~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~ 168 (232)
T PRK08051 94 DAWLREESERPLLLIAGGTGFSYARSILLTALAQGP----NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVVE 168 (232)
T ss_pred ceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC----CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEeC
Confidence 888776566899999999999999999999876432 26899999999997 9999999999999877778999998
Q ss_pred cCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHH-HHH
Q 005624 608 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 657 (687)
Q Consensus 608 r~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L-~~i 657 (687)
++++ .++||++.+.++.. + ..+..+|+||| ++|+++|.+.| .+.
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCcccceeeehHHHHhhcc---C--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 8643 46788777654311 1 13568999999 89999999887 543
No 31
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.89 E-value=6.9e-23 Score=210.50 Aligned_cols=183 Identities=25% Similarity=0.362 Sum_probs=139.6
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.|..+.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 99 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGPY 99 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECCc
Confidence 45788876555544 5799999999863 46788887643 3588999997 566655 35566667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+..+|+||||+|||||||++++++...... ..+++||||+|+.+ |.+|.+||+++++....++++.++
T Consensus 100 G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 174 (238)
T cd06211 100 GDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPAL 174 (238)
T ss_pred cceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEEE
Confidence 8898876656899999999999999999999876432 25899999999997 999999999999887777888999
Q ss_pred ecCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
||+.. .++|+++.+.+.... ..++..+|+||| ++|++++.+.|.+.
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 98642 356777655432110 114678999999 99999999988753
No 32
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.89 E-value=4.7e-23 Score=222.83 Aligned_cols=181 Identities=18% Similarity=0.294 Sum_probs=141.5
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..+.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD------ILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC------EEEEEcCce
Confidence 347899866556566899999999863 36899888643 35889999974 66654 456666778
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.++....+|+||||+|||||||++++++....+. .++++||||+|+.+ |+++.++|++|.++...++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~----~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI----QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 999876667899999999999999999999876432 26899999999997 8999999999998777778999999
Q ss_pred cCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 608 REGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 608 r~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
|+.+ .++||++.+.+... + ..+..+|+||| ++|++++.+.|.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~---~--~~~~~vy~CGp-~~m~~~~~~~l~~ 319 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFP---D--LSGHQVYACGS-PVMVYAARDDFVA 319 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhcc---c--ccCCEEEEECC-HHHHHHHHHHHHH
Confidence 8421 45778877654321 1 14578999999 9999999988865
No 33
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.89 E-value=5.6e-23 Score=210.13 Aligned_cols=185 Identities=22% Similarity=0.216 Sum_probs=139.7
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhccc-CCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||.+. .+++ .+.|..+.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~gP~ 87 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDGPY 87 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEECCc
Confidence 35688886655666 6799999998864 46788887643 358899999874 5544 35566667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+..+|+||||+|||||||++++++...... ....+++|+||+|+.+ |++|.+||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 8887765556899999999999999999999876421 1236899999999987 999999999999887777888999
Q ss_pred ecCCC--------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~--------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+++. .++|+++.+.+... ....+..||+||| ++|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~----~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLG----DRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhcc----CCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87642 23566665544311 1124689999999 89999998888654
No 34
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=5.9e-23 Score=227.32 Aligned_cols=181 Identities=19% Similarity=0.335 Sum_probs=140.3
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEE
Q 005624 462 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 541 (687)
Q Consensus 462 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiIm 541 (687)
...|+|||+|.|.. .+.++|+|+.+......++...|.+|+||+++.+|+ .+.|..+.|+|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35699999999863 468999987765444445566799999999887766 45677778899876 35689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 615 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~y 615 (687)
||+|||||||++++++.+..... .++++||||+|+++ |.+|.+||+++.+...++++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~~---~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 99999999999999987764321 26899999999997 99999999999988777889999987532 3578
Q ss_pred cchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 616 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 616 Vq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|++.+.+.. +.+.. ..+..+|+||| ++|+++|.+.|.+.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 887765431 11111 24579999999 99999999888653
No 35
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.89 E-value=8.6e-23 Score=225.58 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=136.9
Q ss_pred ChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005624 450 PLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 523 (687)
Q Consensus 450 p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~ 523 (687)
.+|||+.+.+| . ..+|+|||+|+|. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|.
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~ 248 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLELA 248 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEEEE
Confidence 47888765443 1 1349999999985 35788877532 34999999987 76765 35666
Q ss_pred EeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005624 524 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 524 v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~ 603 (687)
.+.|.|.++.+..+|+||||+|||||||++++++...... .++++||||+|+.+ |++|.+||+++++.+..++++
T Consensus 249 gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~~ 323 (399)
T PRK13289 249 APAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP----KRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKAH 323 (399)
T ss_pred cCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEEE
Confidence 6788999987667899999999999999999999875432 26899999999997 999999999999887777899
Q ss_pred EEEecCCCC----ccccc-hhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 604 VAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 604 ~afSr~~~~----k~yVq-~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.++|++... ..|++ .++. .+.+.+.+ ..+..+||||| ++|+++|.+.|.+.
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 999985421 22222 2221 12333334 24789999999 99999999888653
No 36
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.89 E-value=1.2e-22 Score=207.37 Aligned_cols=178 Identities=24% Similarity=0.358 Sum_probs=138.6
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~ 93 (228)
T cd06209 31 FLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGPL 93 (228)
T ss_pred cCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECCc
Confidence 34688886544544 4799999998863 6788877543 35889999998 66654 35565566
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.. .+|++|||+||||||+++++++..... ..++++|+||+|+.+ |.+|.+||+++.+....+++++++
T Consensus 94 G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 167 (228)
T cd06209 94 GSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTVV 167 (228)
T ss_pred ccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEEE
Confidence 88877644 489999999999999999999987643 236899999999987 999999999999887777889999
Q ss_pred ecCCC---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||+.. .++||++.+.+. .+ ..+..+|+||| ++|+++|++.|.+
T Consensus 168 s~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp-~~m~~~~~~~l~~ 214 (228)
T cd06209 168 ADPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGP-PPMVDAVRSWLDE 214 (228)
T ss_pred cCCCccCCCcCCccHHHHHh------hccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98643 456888776543 12 24578999999 8999999998875
No 37
>PRK12359 flavodoxin FldB; Provisional
Probab=99.89 E-value=3.6e-22 Score=193.88 Aligned_cols=144 Identities=19% Similarity=0.356 Sum_probs=120.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|++.|+|+|+|||||.+|++|++.+.. ..+++.+++++++ +++..++.+||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~----~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE----ELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC----CeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 689999999999999999999998732 2367888888875 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCC-ch-HHHHHHHHHHHHHHHHcCCccccc-----------------------cccc
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP-----------------------VGLG 239 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~ak~ld~~L~~lGa~~l~~-----------------------~g~g 239 (687)
.|.+. .|+|+++||||+||+ .| ++||.+++.+.++|++.||+.+.. +.+.
T Consensus 71 ~l~~~-----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDL-----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhC-----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 88754 599999999999998 58 899999999999999999985432 2222
Q ss_pred cCCCC--cHHhHHHHHHHHHHHHHhh
Q 005624 240 DDDQC--IEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 240 D~~~~--~e~~f~~W~~~l~~~L~~~ 263 (687)
++++. +++++++|.++|.+++..+
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 23332 7899999999998877543
No 38
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=1e-22 Score=225.08 Aligned_cols=181 Identities=18% Similarity=0.333 Sum_probs=137.5
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEE
Q 005624 462 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 541 (687)
Q Consensus 462 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiIm 541 (687)
...|+|||+|+|.. .+.++|+|+.+.......+...|.+|+||.++.+|+ .+.|..+.|.|.++. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 34699999999864 478999887653222222355799999999887766 466777788998763 4689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 615 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~y 615 (687)
||+|||||||++|+++.+..... ..+++||||+|+++ |.+|.+||+++.+++.++++++++||+++ .++|
T Consensus 276 IAgGtGIaP~lsmi~~~l~~~~~---~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhcCCC---CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 99999999999999987654221 25799999999997 99999999999988877789999987532 3567
Q ss_pred cchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 616 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 616 Vq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|++.+.+.. +.+.. ..+..+|+||| ++|+++|.+.|.+.
T Consensus 352 v~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 352 IHNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred eCHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 887765321 11111 24678999999 99999999888653
No 39
>PRK06703 flavodoxin; Provisional
Probab=99.88 E-value=4.8e-22 Score=190.16 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=121.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++++|+|+|+||||+.+|+.|++++.+.+ ..+++.++++.+. ..+.+++.+||++||||+|++|++++.|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 578999999999999999999999998765 4567888877664 34778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC---CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~L 260 (687)
++|... .+++++++|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...+
T Consensus 73 ~~l~~~-----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENI-----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcC-----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 999753 4789999999999999999999999999999999999887655544332 23456778888876655
Q ss_pred H
Q 005624 261 D 261 (687)
Q Consensus 261 ~ 261 (687)
.
T Consensus 148 ~ 148 (151)
T PRK06703 148 A 148 (151)
T ss_pred H
Confidence 4
No 40
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.88 E-value=1.2e-22 Score=207.55 Aligned_cols=184 Identities=19% Similarity=0.321 Sum_probs=135.1
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.++ ...+|+|||+|.|. .+.+.|+|+.+ ..|.+|+||. ++.+|+ .+.|..+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 91 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMGP 91 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeCC
Confidence 46888754333 12469999999886 47788887643 2488999998 576765 4566667
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.+...++||||+||||||+++++++...... ..++.||||+|+++ |++|.+||++++++...++++++
T Consensus 92 ~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 166 (231)
T cd06191 92 QGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP----ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLCI 166 (231)
T ss_pred ccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEE
Confidence 78899876666899999999999999999999865432 26899999999986 99999999999987777789999
Q ss_pred EecCCCCccccchhhhcchHHHHhccc--CCcEEEEECCchhhHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i~--~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+||++....+.+++.....+....++. .++.+|+||| ++|++++.+.|.+
T Consensus 167 ~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 167 FTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred ECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 998754333333222111111111222 3579999999 8999999988854
No 41
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.88 E-value=2e-22 Score=206.66 Aligned_cols=182 Identities=22% Similarity=0.304 Sum_probs=139.0
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. ...|+|||+|.|.. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~ 98 (236)
T cd06210 35 FVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGPL 98 (236)
T ss_pred cCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecCc
Confidence 4578988654453 34799999999863 36788877543 35889999997 66655 45666667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+..+++||||+|||||||+++++++..... ..+++||||+|+.+ |.+|.+||+++.+...++++++++
T Consensus 99 G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 173 (236)
T cd06210 99 GAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE----PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRICV 173 (236)
T ss_pred ceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 8898876556799999999999999999999875432 25799999999987 999999999999887777899999
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||+.. .++++++.+.+.. . .......+|+||| ++|++++++.|.+
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l---~-~~~~~~~vyicGp-~~m~~~~~~~l~~ 222 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDL---A-SSDAKPDIYLCGP-PGMVDAAFAAARE 222 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhh---c-ccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98532 3566666554321 1 1123568999999 8999999998875
No 42
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.88 E-value=2e-22 Score=207.43 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=139.4
Q ss_pred ChHHHHHHHcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 450 PLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 450 p~~~~l~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
.+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+. .
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 88 (241)
T cd06195 26 QAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGKK 88 (241)
T ss_pred CCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECcC
Confidence 4688875444432 4599999998853 6788877543 3589999999887765 35565 5
Q ss_pred eeCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHc-CCCcEE
Q 005624 525 RQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQL 602 (687)
Q Consensus 525 ~~~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~-g~~~~l 602 (687)
+.|.|.++.. ...|++|||+|||||||++++++..... ..++++||||+|+++ |.+|.+||+++.++ ...+++
T Consensus 89 P~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~ 163 (241)
T cd06195 89 PTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFRY 163 (241)
T ss_pred CCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEEE
Confidence 6688988765 4589999999999999999999987532 126899999999997 99999999999887 556688
Q ss_pred EEEEecCCCC---ccccchhhhcc-hHHHHhc--ccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 603 IVAFSREGPT---KEYVQHKMMEK-SSDIWNM--LSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 603 ~~afSr~~~~---k~yVq~~l~e~-~~~v~~~--i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.+++|++.. ++|+++.+... ....... ...+..||+||| ++|+++|.+.|.+.
T Consensus 164 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 223 (241)
T cd06195 164 VPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEK 223 (241)
T ss_pred EEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHc
Confidence 8889987543 67888876531 1111111 125679999999 89999999888764
No 43
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.88 E-value=2.5e-22 Score=217.13 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=140.7
Q ss_pred CChHHHHHHHcCCCc-ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~-pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCc
Confidence 357898865556443 699999999863 47899888643 35889999974 66655 45666677
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++. ..+|+||||+|||||||+++++++..... .++++||||+|+++ |++|.+||+++.++...++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQGC----SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcCC----CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 8998864 35899999999999999999999876431 26899999999997 999999999999888788899998
Q ss_pred ecCCC----CccccchhhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++.++ .++||++.+.+. .+. ....+|+||| ++|++++.+.|.+.
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred eCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 87532 467888776543 122 3467999999 99999999988653
No 44
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.88 E-value=3.1e-22 Score=203.36 Aligned_cols=180 Identities=22% Similarity=0.319 Sum_probs=139.5
Q ss_pred ChHHHHHHHcCCC--cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVPRL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~l--~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.. ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGPY 88 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCCc
Confidence 4688876554543 3699999998864 36788877532 35899999987 77655 45666677
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+...++||||+|||||||++++++..... ...+++|||++|+.+ |++|.++|+++.+....+++++++
T Consensus 89 G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 163 (224)
T cd06187 89 GTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPVV 163 (224)
T ss_pred cceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEEe
Confidence 888887655689999999999999999999987643 126899999999997 999999999999887777888888
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++.. .++|+++.+.+... + ..+..+|+||| ++|+++|.+.|.+
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~~v~vcGp-~~~~~~v~~~l~~ 211 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGP---D--WADHDIYICGP-PAMVDATVDALLA 211 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhcc---c--cccCEEEEECC-HHHHHHHHHHHHH
Confidence 87542 45788877654321 1 24689999999 9999999988865
No 45
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.88 E-value=2.5e-22 Score=205.45 Aligned_cols=181 Identities=22% Similarity=0.370 Sum_probs=137.8
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~ 527 (687)
.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..+.|
T Consensus 31 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G 94 (232)
T cd06212 31 FAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGPYG 94 (232)
T ss_pred CCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcCcc
Confidence 4688876544543 5799999999864 36788887642 35889999986 66654 456666778
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.++.+...|+||||+|||||||++++++...... .++++|+||+|+.. |++|.+||+++.+....+++++++|
T Consensus 95 ~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s 169 (232)
T cd06212 95 TCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS----DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPALS 169 (232)
T ss_pred cceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC----CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEEEC
Confidence 898876556899999999999999999999876432 26799999999997 9999999999998776777888999
Q ss_pred cCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+.. ..+|+++.+.+.... + ++..+|+||| ++|+++|.+.|.+.
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 170 ESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred CCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8542 245666654332111 1 4678999999 89999999888653
No 46
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.87 E-value=4.1e-22 Score=214.85 Aligned_cols=183 Identities=16% Similarity=0.284 Sum_probs=136.0
Q ss_pred ChHHHHHHHcCC--CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~--l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
-+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.+..+.
T Consensus 38 ~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~ 101 (332)
T PRK10684 38 RAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDAM 101 (332)
T ss_pred CCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCCc
Confidence 468887544442 23599999999863 36788888643 4588999996 566655 35565567
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+..+|+||||+|||||||++|+++...... ..+++||||+|+.+ |++|.+||+++++....+++++..
T Consensus 102 G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~----~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 176 (332)
T PRK10684 102 GEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP----QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLVA 176 (332)
T ss_pred cccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEEe
Confidence 8899876667899999999999999999998765431 26899999999997 999999999999877665677776
Q ss_pred ecCCCCccccchhhhcchHHHHhccc--CCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~~k~yVq~~l~e~~~~v~~~i~--~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++++ .++|+++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 177 ~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 177 ENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred ccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 6543 345666666432 2222221 3678999999 99999999988664
No 47
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.87 E-value=4.8e-22 Score=210.24 Aligned_cols=180 Identities=21% Similarity=0.265 Sum_probs=133.7
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
..+|||+.+.+|....|+|||+|+|.. ++.++|+|+. .|.+|+||.++.+|+ .+.|..+.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 357898865446555699999999863 4678887752 388999999887765 3556556676
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 529 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 529 -F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
|.++....+|+||||+|||||||++++++++.... ..++++||||+|+.+ |++|++||+++++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---KYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcCC---CCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 66654445799999999999999999999876431 126899999999996 9999999999988777778899999
Q ss_pred cCCCC---------------ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~~---------------k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+... +++|++.+.+. .. ..+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333322211 11 24568999999 99999999988654
No 48
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.87 E-value=1.1e-21 Score=199.19 Aligned_cols=183 Identities=19% Similarity=0.244 Sum_probs=135.0
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhccc-CCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|+|... +.++|+|+.+ ..|.+|+||.+. .+|+ .+.|..+.|
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~~-~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G 87 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDGD-NELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPFG 87 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCCC-CEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCcC
Confidence 3568888655566667999999998643 6788777532 348899999984 6654 456666678
Q ss_pred CcccCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 528 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~-~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
.|.+.. ....|++|||+|||||||++++++++.... .++++||||+|+.+ |++|.+||+++.+....++++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH----QGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC----CccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 876643 456799999999999999999999875432 26899999999997 999999999999877667888888
Q ss_pred ecCCCCc-cccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGPTK-EYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~~k-~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+++.... .+..+.+.+. +. .+..+..+|+||| ++|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 8864332 1111112111 11 1245789999999 99999999998753
No 49
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.87 E-value=8.6e-21 Score=195.52 Aligned_cols=165 Identities=24% Similarity=0.402 Sum_probs=126.3
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEE
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 542 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImI 542 (687)
+|+|||+|.|....+.+.|+|+.+ ..|.+|.||.+ +.+|+ .+.|..+.|.|.++.+..+++|||
T Consensus 64 ~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~f~l~~~~~~~~v~i 128 (243)
T cd06216 64 WRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQPQGDFVLPDPLPPRLLLI 128 (243)
T ss_pred EEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEECCceeeecCCCCCCCEEEE
Confidence 599999998851246788887643 34888999986 66655 355666678899987656899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 622 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e 622 (687)
|+||||||+++++++..... ..++++||||+|+.+ |.+|.+||+++.+++..+++++.+|++ ..++++...+
T Consensus 129 agG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~-~~~g~~~~~~-- 200 (243)
T cd06216 129 AAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHLLYTRE-ELDGRLSAAH-- 200 (243)
T ss_pred ecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEEEEcCC-ccCCCCCHHH--
Confidence 99999999999999986543 236899999999997 999999999998777767888888876 2344443322
Q ss_pred chHHHHhcc--cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 623 KSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 623 ~~~~v~~~i--~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+.+.+ ..++.+|+||| ++|++++.+.|.+
T Consensus 201 ----l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~ 231 (243)
T cd06216 201 ----LDAVVPDLADRQVYACGP-PGFLDAAEELLEA 231 (243)
T ss_pred ----HHHhccCcccCeEEEECC-HHHHHHHHHHHHH
Confidence 22222 14579999999 8999999998865
No 50
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.87 E-value=9.1e-22 Score=206.40 Aligned_cols=143 Identities=31% Similarity=0.567 Sum_probs=123.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
.+-.|||+||||||+++|+.+++++++.. ..++++|++ |.++| ++ +++++|+++|+-+|+|| +..|+.
T Consensus 47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~~ 114 (601)
T KOG1160|consen 47 IKSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFLQ 114 (601)
T ss_pred ccceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHHH
Confidence 34489999999999999999999998764 336788998 77543 55 77888888888899999 889999
Q ss_pred HHHhhcC----CCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHH
Q 005624 185 WFTEQKE----GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 259 (687)
Q Consensus 185 ~L~~~~~----~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~ 259 (687)
||++... ++..|++++||||||||+.| ++||..|+++|+|+..|||+|++|+|++|.+. ..+++|+..+.+.
T Consensus 115 ~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~ 191 (601)
T KOG1160|consen 115 WLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAET 191 (601)
T ss_pred HHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHH
Confidence 9998543 45689999999999999997 99999999999999999999999999999873 4466999999888
Q ss_pred HHh
Q 005624 260 LDN 262 (687)
Q Consensus 260 L~~ 262 (687)
|+.
T Consensus 192 Lk~ 194 (601)
T KOG1160|consen 192 LKD 194 (601)
T ss_pred HcC
Confidence 775
No 51
>PRK05713 hypothetical protein; Provisional
Probab=99.87 E-value=1e-21 Score=209.99 Aligned_cols=175 Identities=17% Similarity=0.209 Sum_probs=129.9
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~- 527 (687)
..+|||+.+.++....|+|||||.|.. .+.++|+|+.+ ..|.+|+||.++.+|+. +.+..+.+
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCCC
Confidence 357899865445556799999999863 46788887543 35889999988877663 44444444
Q ss_pred CcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 528 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
.|.++.+ ..+|+||||+|||||||+|++++....+. .++++|+||+|+.+ |++|.+||++++++...++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666644 46899999999999999999999876432 26899999999997 999999999999877666777766
Q ss_pred ecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++ ++++.+.+. . ....+..+|+||| ++|++++.+.|.+
T Consensus 258 ~~------~~~~~l~~~----~-~~~~~~~vyiCGp-~~mv~~~~~~L~~ 295 (312)
T PRK05713 258 AA------QLPAALAEL----R-LVSRQTMALLCGS-PASVERFARRLYL 295 (312)
T ss_pred Cc------chhhhhhhc----c-CCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 54 233333211 0 1224578999999 9999999998864
No 52
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.86 E-value=1.7e-21 Score=201.13 Aligned_cols=178 Identities=20% Similarity=0.314 Sum_probs=134.0
Q ss_pred ChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005624 450 PLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 523 (687)
Q Consensus 450 p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~ 523 (687)
.+|||+.+.+| . ...|+|||+|.|.. +.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|.
T Consensus 38 ~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~ 100 (247)
T cd06184 38 LPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEVS 100 (247)
T ss_pred CCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEE
Confidence 46777754443 2 35799999999853 4677766532 24899999998 77765 35566
Q ss_pred EeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005624 524 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 524 v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~ 603 (687)
.+.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+++ |.+|.+||+++.+.+..++++
T Consensus 101 gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 175 (247)
T cd06184 101 APAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP----GRPVTFIHAARNSA-VHAFRDELEELAARLPNLKLH 175 (247)
T ss_pred cCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC----CCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEEE
Confidence 6678899876556899999999999999999999876421 26899999999997 899999999999876777899
Q ss_pred EEEecCCCC--------ccccchhhhcchHHHHhc-ccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 604 VAFSREGPT--------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~~--------k~yVq~~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++||.... .++++. +.+.+. ...+..+|+||| +.|++++.+.|.+
T Consensus 176 ~~~s~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~ 230 (247)
T cd06184 176 VFYSEPEAGDREEDYDHAGRIDL------ALLRELLLPADADFYLCGP-VPFMQAVREGLKA 230 (247)
T ss_pred EEECCCCcccccccccccCccCH------HHHhhccCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 999986432 233332 122222 246789999999 8999999988865
No 53
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.86 E-value=1.8e-21 Score=198.61 Aligned_cols=177 Identities=24% Similarity=0.363 Sum_probs=133.7
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~ 527 (687)
.+|||+.+.+|.. ..|+|||+|+|.. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.|
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G 92 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGPFG 92 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCCCc
Confidence 3688875544543 4799999999863 46788877533 34889999965 55654 456666678
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHc-CCCcEEEEEE
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~-g~~~~l~~af 606 (687)
.|.++. ..+++||||+|||||||+++++++.... ...+++||||+|+++ |.+|.+||+++++. ...++++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG----TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 898864 3578999999999999999999986543 125799999999997 99999999999865 3556788888
Q ss_pred ecCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
|++.. .++||++.+.+. +..+..+|+||| ++|++++.+.|.+
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~ 214 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRA 214 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHH
Confidence 87532 235676655432 135689999999 8999999888865
No 54
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.86 E-value=2e-21 Score=201.69 Aligned_cols=180 Identities=21% Similarity=0.324 Sum_probs=136.3
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||.++.+|+ .+.+..+.|.
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G~ 89 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFGN 89 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcCC
Confidence 457888865556555699999999863 4678887752 378899999876655 3556666666
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 529 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 529 -F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
|.++....+|+||||+||||||++++++++++... ..++++|||+.|+.+ |++|++||+++.+. ..+++.+++|
T Consensus 90 ~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~s 164 (253)
T cd06221 90 GFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---DYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTVD 164 (253)
T ss_pred CcccccccCCeEEEEccccchhHHHHHHHHHHhccc---cCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEeC
Confidence 66654356899999999999999999999886431 126899999999997 99999999999987 5567888888
Q ss_pred cCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+.+ ..+|+++.+.+... ...+..||+||| +.|++++.+.|.+.
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCccCCccccchhHHhcCC-----CcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 7542 34677765544310 025679999999 99999999888754
No 55
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.86 E-value=2.8e-21 Score=197.28 Aligned_cols=183 Identities=19% Similarity=0.299 Sum_probs=132.4
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.. ..|.+|.||. ++.+|+ .+.|..+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~gP 92 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASGP 92 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcC
Confidence 46788754444 223699999999863 35688877643 3488999997 566655 3566666
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.....++||||+|||||||++++++...... ..+++||||+|+++ |++|.++|+++.++...++++++
T Consensus 93 ~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (231)
T cd06215 93 AGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP----DADIVFIHSARSPA-DIIFADELEELARRHPNFRLHLI 167 (231)
T ss_pred cceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEEE
Confidence 78898875556899999999999999999999875432 25799999999997 99999999999987666678888
Q ss_pred EecCCCC-ccccchhhhcchHHHHhccc--CCcEEEEECCchhhHHHHHHHHHH
Q 005624 606 FSREGPT-KEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 606 fSr~~~~-k~yVq~~l~e~~~~v~~~i~--~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.+++... ..+.+.++.+ +.+.+.+. .+..+|+||| ++|++++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~ 218 (231)
T cd06215 168 LEQPAPGAWGGYRGRLNA--ELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAE 218 (231)
T ss_pred EccCCCCcccccCCcCCH--HHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHH
Confidence 8875431 2222233321 11222221 3468999999 9999999888864
No 56
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.85 E-value=4.1e-21 Score=194.51 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=128.6
Q ss_pred CChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+ + ..|..|.||.++.+|+ .+.+..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~----~----~~g~~s~~l~~l~~G~------~v~i~g 91 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY----P----DHDGVTEQLGRLQPGD------TLLIED 91 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc----C----CCCcHhHHHHhCCCCC------EEEEEC
Confidence 4578887544442 3579999999985 36788887643 1 1256799999988766 355666
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
+.|+|.++ .|+||||+|||||||+++++++..... ..+++|+||+|+.+ |++|.+||+++.. .+++.
T Consensus 92 P~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~~ 158 (218)
T cd06196 92 PWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK----LEGNTLIFANKTEK-DIILKDELEKMLG----LKFIN 158 (218)
T ss_pred CccceEec----CceEEEecCCCcChHHHHHHHHHhCCC----CceEEEEEecCCHH-HHhhHHHHHHhhc----ceEEE
Confidence 67888753 579999999999999999999876321 25789999999986 9999999999852 35777
Q ss_pred EEecCCCCccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~~~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++||++. ..|.+.++.+ +.+.+++ ..++.+|+||| ++|++++.+.|.+.
T Consensus 159 ~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 159 VVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8888653 3455555532 2233333 33579999999 89999999888653
No 57
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.85 E-value=7.6e-21 Score=195.46 Aligned_cols=186 Identities=23% Similarity=0.361 Sum_probs=133.9
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+|. ..+|+|||+|.|.. +.++|.|+.+ ..|.+|+||. ++.+|+ .+.|..
T Consensus 33 ~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~g 95 (241)
T cd06214 33 YRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVMP 95 (241)
T ss_pred cCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEeC
Confidence 4578998655442 35799999998763 3688777543 3588999997 566655 356666
Q ss_pred eeCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEE
Q 005624 525 RQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQL 602 (687)
Q Consensus 525 ~~~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l 602 (687)
+.|.|.++.+ ...++||||+|||||||+++++++..... .++++||||+|+.. |++|.+||+++.+... .+++
T Consensus 96 P~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 170 (241)
T cd06214 96 PAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP----ASRVTLVYGNRTEA-SVIFREELADLKARYPDRLTV 170 (241)
T ss_pred CccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceEE
Confidence 6788888765 46899999999999999999999875431 26899999999997 9999999999987653 5567
Q ss_pred EEEEecCCCCccccchhhhcc-hHHHH-hcc--cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 603 IVAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 603 ~~afSr~~~~k~yVq~~l~e~-~~~v~-~~i--~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..++++++....+.+.++.+. ..... +++ ..+..||+||| +.|+++|.+.|.+.
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 171 IHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 788887654322222333211 11111 111 34679999999 89999999888653
No 58
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.84 E-value=8.7e-21 Score=206.21 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=133.5
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+| ....|+|||+|.|. .+.+.|+|+.+ ..|.+|+||. ++.+|+ .+.|..
T Consensus 33 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~g 95 (352)
T TIGR02160 33 FAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVMA 95 (352)
T ss_pred CCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEeC
Confidence 357888865443 12359999999984 46788888644 2488999997 566655 355655
Q ss_pred eeCCcccCCCC--CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcE
Q 005624 525 RQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 601 (687)
Q Consensus 525 ~~~~F~lp~~~--~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~ 601 (687)
+.|+|.++.+. .+++||||+|||||||++++++.+.... .++++||||+|+++ |.+|.+||+++++... .++
T Consensus 96 P~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 170 (352)
T TIGR02160 96 PQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP----RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFH 170 (352)
T ss_pred CceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEE
Confidence 67889886542 3789999999999999999999876431 26899999999997 9999999999987654 467
Q ss_pred EEEEEecCCCCccccchhhhc-chHH-HHhcc--cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 602 LIVAFSREGPTKEYVQHKMME-KSSD-IWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 602 l~~afSr~~~~k~yVq~~l~e-~~~~-v~~~i--~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++.++||+.....+.+.++.. .... +.++. .....+|+||| ++|++++++.|.+.
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 888999865332222333311 1111 11121 23468999999 99999999998764
No 59
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.84 E-value=8.7e-21 Score=194.17 Aligned_cols=182 Identities=20% Similarity=0.326 Sum_probs=132.9
Q ss_pred ChHHHHHHHcC--CC--cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEE
Q 005624 450 PLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 450 p~~~~l~~~~p--~l--~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v 524 (687)
.+|||+.+.+| .- ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..
T Consensus 32 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~g 95 (235)
T cd06217 32 LAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVRG 95 (235)
T ss_pred CCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEeC
Confidence 35888765444 11 2499999999864 36788887643 24889999986 55654 356666
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
+.|.|.++....++++|||+||||||+++++++...... ..+++|+||+|+.+ |.+|.+||.++.++...++++.
T Consensus 96 P~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~~ 170 (235)
T cd06217 96 PIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----PVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVTE 170 (235)
T ss_pred CceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 678888765446889999999999999999999876432 26799999999997 8999999999998766668888
Q ss_pred EEecCC-C----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~-~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+++|+. + .++++.+.+.+. +... ..+..+||||| ++|+++|.+.|.+.
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 899862 1 223443322111 1111 25689999999 99999999988754
No 60
>PRK09271 flavodoxin; Provisional
Probab=99.84 E-value=2.7e-20 Score=179.85 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=111.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+|+|+|+|+|||||++|+.|++.+...+ ..+++.++++.+..+. ..++.+++++||++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 68999999999999999999999998876 3456677665543221 1245678999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCC---CcHHhHHHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPE 259 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~ 259 (687)
+|... ..++++++|||+||+.| ++||.+++.++++|.... +....+... ...+.+..|..++++.
T Consensus 77 ~l~~~-----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAET-----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHH-----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 99864 24678999999999999 899999999999997542 322222211 2247889999998887
Q ss_pred H
Q 005624 260 L 260 (687)
Q Consensus 260 L 260 (687)
|
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
No 61
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.84 E-value=1.3e-20 Score=194.89 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=126.6
Q ss_pred ChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.|..+
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~gP 87 (246)
T cd06218 26 KPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVLGP 87 (246)
T ss_pred CCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEEec
Confidence 467887654443 35799999998853 36788876532 77899999887765 4566666
Q ss_pred eCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 526 QSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 526 ~~~-F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
.|. |.++. ...|+||||+|||||||++++++..... ++++|||++|+.+ |.+|.+||+++.. ++.+
T Consensus 88 ~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~~ 154 (246)
T cd06218 88 LGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG------IKVTVLLGFRSAD-DLFLVEEFEALGA-----EVYV 154 (246)
T ss_pred CCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC------CceEEEEEccchh-hhhhHHHHHhhCC-----cEEE
Confidence 664 77764 4689999999999999999999886521 5899999999997 9999999998852 2332
Q ss_pred EEecCC--CCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~--~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++++. ..++||++.+.+.... ..+..||+||| ++|++++++.|.+.
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~ 202 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAER 202 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 23332 2457888876654321 14689999999 89999999998764
No 62
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.84 E-value=1.3e-20 Score=196.76 Aligned_cols=176 Identities=19% Similarity=0.251 Sum_probs=128.4
Q ss_pred ChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC-
Q 005624 450 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 528 (687)
Q Consensus 450 p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~- 528 (687)
-+|||+.+-+|...+|+|||++.+ .+.++|+|+. .|.+|+||.++.+|+. +.|..+.|+
T Consensus 34 ~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd~------v~v~gP~G~~ 93 (263)
T PRK08221 34 KPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGDK------LFLRGPYGNG 93 (263)
T ss_pred CCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCCE------EEEECCCCCC
Confidence 468998655566567999999875 3678887742 2889999998877663 445555565
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
|.++....+|+||||+|||||||++++++...... ..++++||||+|+.+ |.+|.+||++|.+.. .+++++++
T Consensus 94 f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~~ 166 (263)
T PRK08221 94 FPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---EIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLDE 166 (263)
T ss_pred cccCccCCccEEEEcccccHHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEecC
Confidence 77766556899999999999999999999865321 225899999999997 999999999998743 35566665
Q ss_pred CCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 609 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 609 ~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
... ..+++++.+.+.. ... ..+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 167 GEEGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 432 2456654443310 000 14678999999 99999999988653
No 63
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.83 E-value=1.6e-20 Score=200.86 Aligned_cols=182 Identities=13% Similarity=0.205 Sum_probs=126.4
Q ss_pred CChHHHHHHHcC-C-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p-~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v 522 (687)
..+|||+....+ . ...|+|||+|.|.. .+.++|+|+.+ ..|..|+||+++.+|+. |
T Consensus 82 f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~--------v 143 (325)
T PTZ00274 82 LKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK--------L 143 (325)
T ss_pred CCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE--------E
Confidence 346777753222 1 23699999999864 46899888743 45899999998877663 4
Q ss_pred EEeeCCccc--CCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC
Q 005624 523 FVRQSNFKL--PADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 598 (687)
Q Consensus 523 ~v~~~~F~l--p~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~--~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~ 598 (687)
.+++..|.+ +.+..+|+||||+|||||||++++++.+..... .....+++|+||+|+.+ |.+|++||+++++...
T Consensus 144 ~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~ 222 (325)
T PTZ00274 144 LFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYS 222 (325)
T ss_pred EEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCC
Confidence 455444443 334447999999999999999999998765321 11224899999999997 9999999999998654
Q ss_pred -CcEEEEEEecCCC------CccccchhhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHH
Q 005624 599 -LSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 653 (687)
Q Consensus 599 -~~~l~~afSr~~~------~k~yVq~~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~ 653 (687)
.++++.+.|++.. ..++|.+.+... +..... ....+|+||| ++|++.|...
T Consensus 223 ~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 223 NRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred CcEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5678888887421 235555443211 111011 2257999999 9999999654
No 64
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.83 E-value=1.8e-20 Score=189.61 Aligned_cols=175 Identities=21% Similarity=0.282 Sum_probs=128.5
Q ss_pred ChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+|. ...|+|||+|.|.. .+.+.|+|+. .|.+|+||. ++.+|+ .+.|..+
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G~------~v~i~gP 85 (216)
T cd06198 24 RAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPGT------RVTVEGP 85 (216)
T ss_pred CCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCCC------EEEEECC
Confidence 478887655453 46799999998863 3688887752 277899998 676654 3556666
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.. .++++|||+||||||+++++++...... .++++|+||+|+.+ |.+|.+||+++.+++ .+++++.
T Consensus 86 ~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~~~ 158 (216)
T cd06198 86 YGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLHVI 158 (216)
T ss_pred CCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEEEE
Confidence 788988765 6899999999999999999999876432 26899999999997 999999999998877 5567776
Q ss_pred EecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.++.+. .......+. ... ....+..+|+||| ++|++++++.|.+
T Consensus 159 ~~~~~~-~~~~~~~~~----~~~-~~~~~~~vyicGp-~~m~~~v~~~l~~ 202 (216)
T cd06198 159 DSPSDG-RLTLEQLVR----ALV-PDLADADVWFCGP-PGMADALEKGLRA 202 (216)
T ss_pred eCCCCc-ccchhhhhh----hcC-CCcCCCeEEEECc-HHHHHHHHHHHHH
Confidence 665332 111111110 000 0124679999999 8999999998875
No 65
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.83 E-value=3.8e-20 Score=189.05 Aligned_cols=184 Identities=20% Similarity=0.280 Sum_probs=134.4
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.+|. ...|+|||+|.+.. .+.+.|+|+.+ ..|.+|.||.++.+|+ .+.|..+
T Consensus 29 ~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~gP 92 (234)
T cd06183 29 LPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRGP 92 (234)
T ss_pred CCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEECC
Confidence 4578888655453 45799999998863 35788777532 2588999999877765 3556556
Q ss_pred eCCcccCCCCC-CCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEE
Q 005624 526 QSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 603 (687)
Q Consensus 526 ~~~F~lp~~~~-~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~ 603 (687)
.|.|.++.+.. .|+||||+||||||+++++++...... ...+++||||+|+.+ |.+|.+||+++.+.. ...+++
T Consensus 93 ~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~ 168 (234)
T cd06183 93 FGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---DKTKISLLYANRTEE-DILLREELDELAKKHPDRFKVH 168 (234)
T ss_pred ccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC---cCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEEE
Confidence 78898865554 799999999999999999999876421 136899999999987 899999999998763 455778
Q ss_pred EEEecCCCC----ccccchhhhcchHHHHhc-ccCCcEEEEECCchhhHH-HHHHHHHH
Q 005624 604 VAFSREGPT----KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~~----k~yVq~~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~-~V~~~L~~ 656 (687)
+++++.+.. .+++++.+.+.. ... ...+..+|+||| ++|++ ++++.|.+
T Consensus 169 ~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 169 YVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 888875432 455554432210 000 124678999999 99999 99888864
No 66
>PRK06756 flavodoxin; Provisional
Probab=99.83 E-value=1.4e-19 Score=172.57 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=113.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
||+|+|+|+|+|||||++|+.|++++.+.+ ..+++.|+.+... ...+.+++.+||++||||.|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 579999999999999999999999998765 4567778765432 135778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (687)
+.+... .++++++++||+|++.|.+||.+.+.+.+.|+++|++.+.+....+-. ..+++++.|.
T Consensus 74 ~~l~~~-----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMDSI-----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHhcC-----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 988643 488999999999999999999999999999999999998875544322 2356665543
No 67
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.82 E-value=3.7e-20 Score=193.01 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=128.0
Q ss_pred ChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC-
Q 005624 450 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 528 (687)
Q Consensus 450 p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~- 528 (687)
-+|||+.+.+|...+|+|||++.+ .++++|+|+. .|.+|++|.++.+|+ .+.|..+.|+
T Consensus 32 ~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd------~v~i~gP~G~~ 91 (261)
T TIGR02911 32 KPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGD------NLFLRGPYGNG 91 (261)
T ss_pred CCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCC------EEEEecCCCCC
Confidence 468888666676678999999853 4678887752 388999999877765 3555556566
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
|.++.+..+|++|||+||||||++++++++..... ..++++||||+|+.+ |.+|.+||++++++. ++...+++
T Consensus 92 f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~~ 164 (261)
T TIGR02911 92 FDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---EIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLDE 164 (261)
T ss_pred cccCccCCceEEEEecccCcHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEcC
Confidence 87776556899999999999999999998765321 125799999999997 999999999998753 24445554
Q ss_pred CCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 609 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 609 ~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..+ ..+++++.+.+.. +.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 165 ~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 165 AEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 321 2356665443310 001 13578999999 99999999888654
No 68
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.82 E-value=6.9e-20 Score=190.43 Aligned_cols=179 Identities=18% Similarity=0.318 Sum_probs=129.0
Q ss_pred ChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
-+|||+.+-++.- ..|.|||+|+|... ..+.|+|++. ..|..|+||+ ++++|+ .+.|..+
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd------~l~v~~P 99 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKRE---------DGGGGSNWLHDHLKVGD------TLEVSAP 99 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEe---------CCCcccHHHHhcCCCCC------EEEEecC
Confidence 4678876555533 56999999999743 5677777643 2388999999 666665 4667667
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++..+..|++|||+|+|||||+||++...... . .++.|+|++|+++ |..|+|| +.+..+......+..
T Consensus 100 ~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~ 172 (266)
T COG1018 100 AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGL 172 (266)
T ss_pred CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEE
Confidence 8999998867779999999999999999999987643 2 5799999999997 9999999 888877664333333
Q ss_pred EecCCCCccccchhhhcchHHHHhcccC-CcEEEEECCchhhHHHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIV 658 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i~~-~~~iYvCG~a~~M~~~V~~~L~~i~ 658 (687)
+...+...+|.. ...+...+.. +..+|+||| .+|+++|...|.+.-
T Consensus 173 ~~~~~~~~g~~~------~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g 219 (266)
T COG1018 173 YTERGKLQGRID------VSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEALG 219 (266)
T ss_pred EEecCCcccccc------HHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 332111122221 1111112222 389999999 899999999986654
No 69
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.82 E-value=7.4e-20 Score=172.86 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=103.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeE-EecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|+++|+|+|+|||||++|+.|++.+...+ ..++ +.++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 58999999999999999999999998765 3344 4455543211 123567899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (687)
+++.. ++++|+|||+||+.| ++||.++++++++|++++..--+....++ ....+.+..|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~--~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHG--EQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcc--cccHHHHHHHHHHh
Confidence 99853 578999999999999 79999999999999776222111121111 12356788998875
No 70
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.82 E-value=1.6e-19 Score=175.69 Aligned_cols=140 Identities=28% Similarity=0.451 Sum_probs=115.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
+|.|+|+|+|||||++|+.|++.+.. ..++++++.+.+. .++..++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 47999999999999999999999863 2367888877653 3477899999999999999999999999998
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc----------------------ccccC
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDD 241 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~----------------------g~gD~ 241 (687)
|... .+++++++|||+||+. | ++||.+++.+.+.|++.|++.+... .++.+
T Consensus 71 l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 8643 4789999999999984 7 7999999999999999999977653 11223
Q ss_pred CC--CcHHhHHHHHHHHHHHH
Q 005624 242 DQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 242 ~~--~~e~~f~~W~~~l~~~L 260 (687)
++ -.+++++.|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 22 25788999998876653
No 71
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.82 E-value=9.6e-20 Score=183.49 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=124.7
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhccc-CCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+. . .+.+|.||.+. .+|+ .+.|..+.|
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~----~----g~~~s~~l~~~~~~Gd------~v~i~gP~g 90 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP----A----SRGGSRYMHELLRVGD------ELEVSAPRN 90 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc----C----CCchHHHHHhcCCCCC------EEEEcCCcc
Confidence 457888865556666899999999863 377888776431 1 13479999764 4454 456666678
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.++.+ .+|+||||+||||||+++++++..... .++.||||+|+.+ |.+|.+||+++. .. .+.+.++
T Consensus 91 ~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~------~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~~ 158 (211)
T cd06185 91 LFPLDEA-ARRHLLIAGGIGITPILSMARALAARG------ADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHFD 158 (211)
T ss_pred CCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC------CCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEEC
Confidence 8988653 579999999999999999999876421 5799999999986 889999999987 22 3555566
Q ss_pred cCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++. ...++++.+.+ +..+..+|+||| +.|++++.+.|.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 543 23333333321 234679999999 89999999988653
No 72
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.82 E-value=8.9e-20 Score=193.82 Aligned_cols=192 Identities=15% Similarity=0.212 Sum_probs=130.0
Q ss_pred CChHHHHHHHcCC-------CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceee
Q 005624 449 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 521 (687)
Q Consensus 449 ~p~~~~l~~~~p~-------l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~ 521 (687)
..+|||+.+.++. ...|+||++|+|. ..+.++|+|+.+......-....|.+|+||.++.+|+ .+.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEE
Confidence 3468887544432 2469999999885 3478998887652111000123588999998887766 355
Q ss_pred EEEeeCCcccCCC---------------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCccccc
Q 005624 522 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 586 (687)
Q Consensus 522 v~v~~~~F~lp~~---------------~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly 586 (687)
|..+.|.|.++.+ ...|++|||+|||||||++++++.+.... ...++.|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---DRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhH
Confidence 6666777765421 12589999999999999999998875421 124799999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CccccchhhhcchHHHHhccc------CCcEEEEECCchhhHH-HHHHHH
Q 005624 587 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNMLS------EGAYLYVCGDAKSMAR-DVHRTL 654 (687)
Q Consensus 587 ~del~~~~~~g~~~~l~~afSr~~~-----~k~yVq~~l~e~~~~v~~~i~------~~~~iYvCG~a~~M~~-~V~~~L 654 (687)
.+||+++. .....+++.+.+++.. ..+||+..+.+.. + ...+ .+..+|+||| ++|++ .+.+.|
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L 287 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNL 287 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHHH
Confidence 99999965 4445678888887422 3466665443321 0 1011 3468999999 99988 466666
Q ss_pred HH
Q 005624 655 HT 656 (687)
Q Consensus 655 ~~ 656 (687)
.+
T Consensus 288 ~~ 289 (300)
T PTZ00319 288 EK 289 (300)
T ss_pred HH
Confidence 54
No 73
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.80 E-value=4.1e-19 Score=166.93 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=110.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-chHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-dna~~F~~~ 185 (687)
|+|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.++ .++..++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 589999999999999999999998765 4577888887764 3567899999999999999999 999999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWREL 255 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~ 255 (687)
|... .+++++++|||+|++.|+ ||.+++.++++|+++|++++.+....+... ...+...+|.+.
T Consensus 73 l~~~-----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDI-----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhC-----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 9753 478999999999999998 999999999999999999998744433221 223334556544
No 74
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.80 E-value=1.5e-19 Score=183.80 Aligned_cols=147 Identities=20% Similarity=0.319 Sum_probs=107.1
Q ss_pred ccccccCCCCCCCC--CeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCC---CCCCC
Q 005624 464 PRYYSISSSPRVAP--SRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 538 (687)
Q Consensus 464 pR~YSIsSsp~~~~--~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~---~~~~P 538 (687)
.|+|||||+|...+ ++++|+|+. .|.+|+||.+...... ..+..+.|..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 49999999996542 678877642 2888999988654210 0012466777788998875 34578
Q ss_pred eEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccch
Q 005624 539 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 618 (687)
Q Consensus 539 iImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~ 618 (687)
+||||+|||||||++++++...... ...+++|+||+|+++ |.+|.+||+++... ...... ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRN---TTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhccc---CCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 9999999999999999998875321 136899999999997 99999999876531 111111 11
Q ss_pred hhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 619 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 619 ~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 117999999 9999999988774
No 75
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.80 E-value=2.4e-19 Score=179.66 Aligned_cols=184 Identities=18% Similarity=0.330 Sum_probs=146.8
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEe
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 543 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa 543 (687)
-|.||+||-|.+. +.|.+.|++-..+...+....|+||+|+.++++|+ ++.|+.+.|.|... +.++|+|+|+
T Consensus 211 ~rAYSmAsYPeE~-giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFig 282 (410)
T COG2871 211 IRAYSMASYPEEK-GIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFIG 282 (410)
T ss_pred HHHhhhhcChhhc-CeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEEe
Confidence 4999999999754 67887777665544555778999999999999987 46788888888875 4589999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCc------cccc
Q 005624 544 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTK------EYVQ 617 (687)
Q Consensus 544 ~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k------~yVq 617 (687)
+|.|.||+||.+-+.+.+... .+++.+.||+|+.. +.+|.||+++++++.++++.|+|.|...++. +++.
T Consensus 283 GGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 283 GGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHH
Confidence 999999999999998876543 37899999999997 8999999999999999999999999876432 3444
Q ss_pred hhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhC
Q 005624 618 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQG 662 (687)
Q Consensus 618 ~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~ 662 (687)
..+.+. .+.++- .++..+|+||| +-|..+|.+.|.+...+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCcccc
Confidence 444443 122221 46789999999 8899999998888765543
No 76
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.80 E-value=2.1e-19 Score=186.15 Aligned_cols=166 Identities=23% Similarity=0.297 Sum_probs=124.2
Q ss_pred CChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++.+|+ .+.|..+
T Consensus 32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G~------~v~i~gP 91 (250)
T PRK00054 32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEGD------ELDIRGP 91 (250)
T ss_pred CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCCC------EEEEEcc
Confidence 35788876544543 58999999998 3678887753 277899999877765 4566666
Q ss_pred eCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 526 QSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 526 ~~~-F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
.|+ |.++. ..+|+||||+||||||+++++++....+ .++.|+|++|+.+ |++|.+||+++.+ +++
T Consensus 92 ~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~~ 157 (250)
T PRK00054 92 LGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VYV 157 (250)
T ss_pred cCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EEE
Confidence 665 88764 4579999999999999999999986532 4789999999997 9999999998431 222
Q ss_pred EEecCC--CCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~--~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
. ++++ ..++||++.+.+.. ....+||+||| ++|++++.+.|.+.
T Consensus 158 ~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 158 T-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred E-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 2 2333 24578888765432 23458999999 99999999988763
No 77
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.79 E-value=6.9e-19 Score=182.38 Aligned_cols=177 Identities=22% Similarity=0.306 Sum_probs=138.6
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
..+|||+.+.+|....|+|||||.+.. .+.+.|.+.+. ..|.+|.++..+.+++ .+.+..+.|+
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd------~i~v~GP~G~ 99 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGD------KIRVRGPLGN 99 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCC------EEEEEcCCCC
Confidence 568999988878888999999999874 46566655443 3599999999997766 3556666788
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
+.+..+..+|+++||+|||+||+++++++....+ ...+++++||.|++. |.++.+|++++... +++.+.+
T Consensus 100 ~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~- 169 (252)
T COG0543 100 GFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD- 169 (252)
T ss_pred CccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC-
Confidence 7776667788999999999999999999987643 236899999999997 99999999999975 4555555
Q ss_pred CCC--Ccccc-chhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHH
Q 005624 609 EGP--TKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 658 (687)
Q Consensus 609 ~~~--~k~yV-q~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~ 658 (687)
+++ .++|| ++.+.+... .+...+|+||| +.|+++|.+.+.+-.
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 332 57888 666654321 14689999999 999999998877643
No 78
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.79 E-value=5.9e-19 Score=180.92 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=120.1
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
.-+|||+.+.+|....|+|||+|.| +.++|+|+. .|.+|+||.++.+|+ .+.|..+.|+
T Consensus 24 ~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G~ 82 (233)
T cd06220 24 FKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYGN 82 (233)
T ss_pred CCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCCC
Confidence 3478998655555556999999987 568877642 388999999877665 3556666666
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 529 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 529 -F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
|.++ .+|+||||+|||||||++++++.... ++++||||+|+++ |.+|.+||++. .++.+..+
T Consensus 83 ~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~------~~~~~~~~ 145 (233)
T cd06220 83 GFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS------DELIVTTD 145 (233)
T ss_pred CccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC------CcEEEEEe
Confidence 8775 57999999999999999999987642 5799999999997 99999999971 12333332
Q ss_pred cC-CCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 RE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~-~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.. ....+++++.+.+.. ......||+||| ++|.+++.+.|.+.
T Consensus 146 ~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 146 DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred CCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 11 113567776554321 223468999999 99999999988653
No 79
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.77 E-value=1.2e-18 Score=179.59 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=121.6
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+. .|..|+||.++.+|+ .+.|..+.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G~------~l~i~gP~ 87 (243)
T cd06192 26 RPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPGE------KLDVMGPL 87 (243)
T ss_pred CCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCCC------EEEEEccC
Confidence 46788755443 345799999999853 4678887642 378899999887765 35565566
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.+..+..++++|||+|||||||++++++..... .+++||||+|+++ |.+|.+||+++. . ..+..
T Consensus 88 G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~~ 154 (243)
T cd06192 88 GNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG------NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIWT 154 (243)
T ss_pred CCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC------CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEEE
Confidence 776654444679999999999999999999976531 5799999999997 999999998872 1 22233
Q ss_pred ecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHH
Q 005624 607 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 658 (687)
Q Consensus 607 Sr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~ 658 (687)
++++. ..+++++... ... ...+..+|+||| ++|++++++.|.+..
T Consensus 155 ~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 155 TDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred ecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 44332 3455554311 111 123468999999 999999999988753
No 80
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.77 E-value=1e-18 Score=184.07 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=121.8
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~~ 527 (687)
-+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+. .|..|.||.++.+|+ .+ .|..+.|
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~Gd------~v~~i~GP~G 90 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEGD------SILDVVGPLG 90 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCCC------EEeeEEcCCC
Confidence 4788886544432 3589999997753 4678887753 288899999887765 34 4666667
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|..+.+ .+|+||||+|+||||+++++++....+ .+++||||.|+++ |.+|.+||+++... +++ .+
T Consensus 91 ~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~~ 156 (281)
T PRK06222 91 KPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-TT 156 (281)
T ss_pred CCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-Ec
Confidence 7654433 579999999999999999999875422 4799999999997 99999999987642 222 23
Q ss_pred cCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+++ .+++|++.+.+.. ........||+||| ++|+++|.+.|.+.
T Consensus 157 ~d~~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 157 DDGSYGRKGFVTDVLKELL----ESGKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred CCCCcCcccchHHHHHHHh----hcCCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 3332 4567776554321 11112457999999 99999999987654
No 81
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.77 E-value=6.9e-18 Score=161.52 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=114.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|+|+|+|+|||||.+|+.|++.|.+.+. .+. ++......+ ..+..++.++++++|||.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~--~~~-~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGF--EVD-IDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCc--eEE-EeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 6899999999999999999999999987652 222 222222211 12347899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHH-HHHHHHHHHHHHHHcC--Cccccccccc--cC--CCCcHHhHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELV 256 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~ak~ld~~L~~lG--a~~l~~~g~g--D~--~~~~e~~f~~W~~~l 256 (687)
.-+.. ..+++++||+||+||+.|.. ||.+...+.+.|+..| +....++... |. ....++....|.+++
T Consensus 73 ~~~~~-----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEP-----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcc-----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 98875 25899999999999999977 9999999999999999 5566665444 22 345788999999988
Q ss_pred HHH
Q 005624 257 WPE 259 (687)
Q Consensus 257 ~~~ 259 (687)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 753
No 82
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.76 E-value=2.3e-18 Score=178.22 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=121.1
Q ss_pred CChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEee
Q 005624 449 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~ 526 (687)
..+|||+.+.++ ....|+|||+|.|.. .+.++|+|+. .|..|.+|.++.+|+ .+ .+..+.
T Consensus 27 ~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G~------~v~~i~gP~ 88 (248)
T cd06219 27 AKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEGD------KIHDVVGPL 88 (248)
T ss_pred CCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCCC------EeeeeecCC
Confidence 357888754333 234699999998753 3678877742 277899998887765 34 355566
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.+..+ ..|+||||+||||||+++++++....+ .+++||||+|+.+ |++|.+||+++.++ ++++
T Consensus 89 G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~- 154 (248)
T cd06219 89 GKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT- 154 (248)
T ss_pred CCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 77765433 579999999999999999999976532 4799999999996 99999999999642 2222
Q ss_pred ecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++.+ ..+|+++.+.+.. .+ ......||+||| ++|++.+.+.|.+
T Consensus 155 ~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 TDDGSYGEKGFVTDPLKELI---ES-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred eCCCCCCccccchHHHHHHH---hc-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 34332 3467776554321 11 123458999999 9999999998864
No 83
>PRK09267 flavodoxin FldA; Validated
Probab=99.76 E-value=1.5e-17 Score=162.08 Aligned_cols=142 Identities=27% Similarity=0.445 Sum_probs=114.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
||+|+|+|+|+||||+++|+.|++.+.. ..+.++|+++... .++..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 5789999999999999999999999863 2357888877653 34778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc---cccc-----------------C
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLGD-----------------D 241 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~---g~gD-----------------~ 241 (687)
+.+... .|+++++++||+||+. | ++||.+.+.+.+.|+..|++.+... |... .
T Consensus 71 ~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 887543 4889999999999985 8 8999999999999999998855431 2111 1
Q ss_pred CC---CcHHhHHHHHHHHHHHH
Q 005624 242 DQ---CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 242 ~~---~~e~~f~~W~~~l~~~L 260 (687)
+. -.++++++|.++|.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 14688999999987754
No 84
>PRK05802 hypothetical protein; Provisional
Probab=99.75 E-value=2.2e-18 Score=184.39 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=118.5
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
-+|||+.+..| ....|+|||+|+|.. .+.+.|+++. .|..|++|.++.+|+. +.|..+.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~Gd~------l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKGDE------ILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCCCE------EEEeCCC
Confidence 36888754333 233599999999863 4778888754 3888999998888663 4444454
Q ss_pred --CCcccC---CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005624 527 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 601 (687)
Q Consensus 527 --~~F~lp---~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~ 601 (687)
|.|.++ ....+++++||+|+||||+++++++....+ .+++||||.|+++ |.+|.+||+++..+..++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~- 229 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL- 229 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE-
Confidence 336653 233568999999999999999999886533 3799999999997 999999999986532211
Q ss_pred EEEEEecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 602 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 602 l~~afSr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+..++. .+++|++.+.+. +...||+||| +.|++.|.+.|.+.
T Consensus 230 ---~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 ---NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ---EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112221 233444444321 2357999999 99999999988764
No 85
>PLN02252 nitrate reductase [NADPH]
Probab=99.75 E-value=5.8e-18 Score=201.16 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=133.7
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
.++|||+.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+. +.|..+
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~------V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDT------IDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCE------EEEecC
Confidence 467887754332 224699999999863 4689998876532111111235999999998877663 455444
Q ss_pred eCC--------cccCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHH
Q 005624 526 QSN--------FKLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 595 (687)
Q Consensus 526 ~~~--------F~lp~~--~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~ 595 (687)
.|. |.++.+ ..++++|||+|||||||+++|++.+.... ...+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 454 455432 24799999999999999999999876422 236899999999997 9999999999998
Q ss_pred cC-CCcEEEEEEecCC-C----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHH-HHHHHHH
Q 005624 596 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 656 (687)
Q Consensus 596 ~g-~~~~l~~afSr~~-~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~-V~~~L~~ 656 (687)
+. ..++++.++|++. . .+++|+..+.+.. ......+..+|+||| ++|++. ++..|.+
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~ 877 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGP-PPMIEFACQPNLEK 877 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCC-HHHHHHHHHHHHHH
Confidence 76 4567888888743 1 3466665443221 111124568999999 999984 6666654
No 86
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.72 E-value=1.8e-17 Score=204.40 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=133.2
Q ss_pred CChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+..| . ...|+|||+|.|. ..+.+.|+|+ ...|.+|+||.++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCCCCE------EEEeCC
Confidence 467999864433 1 2249999999996 3467887663 125889999998888763 444332
Q ss_pred e----------CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHH
Q 005624 526 Q----------SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 595 (687)
Q Consensus 526 ~----------~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~ 595 (687)
. +.|.++.+..+|+||||+|||||||++++++.+.... .....+++||||+|+.+ |.+|.+||+++++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 2 2466666666899999999999999999998775321 01235899999999997 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 596 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 596 ~g~-~~~l~~afSr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.. .+++++++|++.+ ..+||++.+.+. +......+..+|+||| ++|+++|.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 764 4688899987543 346666543222 1111124578999999 99999999988664
No 87
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.70 E-value=7e-17 Score=145.09 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=81.6
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCC-cEEEEEEecCCC----Cccc
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 615 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~-~~l~~afSr~~~----~k~y 615 (687)
|||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 8999999999999999998763 237999999999997 99999999999988765 233333 44322 4689
Q ss_pred cchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHH
Q 005624 616 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 652 (687)
Q Consensus 616 Vq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~ 652 (687)
|++.+.+.... ......+..|||||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99988665433 223357899999999 999999875
No 88
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.69 E-value=4.5e-16 Score=161.24 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=125.9
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEE
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 542 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImI 542 (687)
--|+||--|++.. .+.+++.|++. ..|.+|.||.++..|+. +.+..+.|+|.++....+.+.||
T Consensus 99 vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~------ve~rGP~G~~~~~~~~~~~l~mi 162 (286)
T KOG0534|consen 99 VVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGDT------VEFRGPIGEFKYDPQKAKHLGMI 162 (286)
T ss_pred EEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCCE------EEEecCccceEecCCCcceEEEE
Confidence 4699999999875 57888877543 24999999999998773 45555568888876667889999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQ 617 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq 617 (687)
|+||||||+..++|+.+...++ ..+++|+|++++++ |.++++||+.++++.. .+.++.+.++... .++||.
T Consensus 163 AgGtGItPmlqii~~il~~~~d---~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It 238 (286)
T KOG0534|consen 163 AGGTGITPMLQLIRAILKDPED---TTKISLLYANKTED-DILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFIT 238 (286)
T ss_pred ecccchhhHHHHHHHHhcCCCC---CcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccC
Confidence 9999999999999998875432 46899999999997 9999999999999877 7778888887652 456666
Q ss_pred hhhhcchHHHHhcc---cC-CcEEEEECCchhhHHH
Q 005624 618 HKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD 649 (687)
Q Consensus 618 ~~l~e~~~~v~~~i---~~-~~~iYvCG~a~~M~~~ 649 (687)
..+. .+.+ .. ...++|||| ++|...
T Consensus 239 ~~~i------~~~l~~~~~~~~~~liCGP-p~m~~~ 267 (286)
T KOG0534|consen 239 KDLI------KEHLPPPKEGETLVLICGP-PPMING 267 (286)
T ss_pred HHHH------HhhCCCCCCCCeEEEEECC-HHHHhH
Confidence 4443 2233 12 479999999 999873
No 89
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.3e-16 Score=164.27 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=122.9
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeCCcccCCCCCCCe
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 539 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~Pi 539 (687)
++.|++||||++... .+++++++. -|..|.-|++ +++|. ++.|..+.|.|......++ -
T Consensus 259 ~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G~------k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVGT------KLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCCc------eEEEecCcceeecccCCcc-c
Confidence 356899999998763 478888764 3788888887 55543 5677778899988654333 8
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchh
Q 005624 540 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 619 (687)
Q Consensus 540 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~ 619 (687)
|.||+|.|||||+|+++.....+.. .++.|||.||+.+ |-+|.+||+++.++.+++.+++.-| ..++|+...
T Consensus 319 VWIAGGIGITPFis~l~~l~~~~s~----~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiDS---s~~g~l~~e 390 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIIDS---SKDGYLDQE 390 (438)
T ss_pred EEEecCcCcchHHHHHHhhcccccC----CceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEecC---CCCCccCHH
Confidence 9999999999999999998764422 6899999999997 8999999999999888877887433 345666433
Q ss_pred hhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 620 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 620 l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..+... -......||+||| ++|++.+++.|+..
T Consensus 391 ~ler~~----~~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 391 DLERYP----DRPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred Hhhccc----cccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 322210 0012348999999 99999999988753
No 90
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.65 E-value=3.9e-16 Score=185.69 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=124.5
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~~ 527 (687)
-+|||+.+.++.. .+|+|||+|.+.. .+.+.|+|+.+ |..|.||.++.+|+ .+ .|..+.|
T Consensus 29 ~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~G 90 (752)
T PRK12778 29 KPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPLG 90 (752)
T ss_pred CCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCCC
Confidence 4789986544432 3589999998753 46788887543 88899999987766 34 4666678
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|..+.. ..+++|||+|+||||+++++++....+ .+++||||.|+.+ |++|.+||+++..+ ++++ +
T Consensus 91 ~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~-t 156 (752)
T PRK12778 91 NPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM-T 156 (752)
T ss_pred CCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-E
Confidence 8776533 478999999999999999999876532 4799999999997 99999999988642 2333 3
Q ss_pred cCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 608 REGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 608 r~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.+++ .++||++.+.+... ...+...||+||| ++|++.|.+.|.+
T Consensus 157 ~dg~~g~~G~v~~~l~~~~~----~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (752)
T PRK12778 157 DDGSYGRKGLVTDGLEEVIK----RETKVDKVFAIGP-AIMMKFVCLLTKK 202 (752)
T ss_pred CCCCCCCcccHHHHHHHHhh----cCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 3332 46788876644311 1112357999999 9999999998764
No 91
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.62 E-value=1.1e-15 Score=153.84 Aligned_cols=168 Identities=16% Similarity=0.206 Sum_probs=112.1
Q ss_pred CChHHHHHHHcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+|.. +.|+|||+|.|....+.+.|+|+. ..|..|.++..+...........+.|..
T Consensus 25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~~~~v~v~G 94 (210)
T cd06186 25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGVSLKVLVEG 94 (210)
T ss_pred cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCceeEEEEEC
Confidence 34678876555654 679999999986434788887753 2377788777665200000112344544
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcc-cccHHHHHHHHHcCCCcEEE
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D-~ly~del~~~~~~g~~~~l~ 603 (687)
+.|.|..+.....++||||+||||||+++++++............++.|+|++|+.+ | ..|.+||.+..+-....+++
T Consensus 95 P~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~~ 173 (210)
T cd06186 95 PYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEIE 173 (210)
T ss_pred CCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceEE
Confidence 567776444456789999999999999999999876532111236899999999997 6 57999998611111110233
Q ss_pred EEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 604 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+..++ +|+||| .+|.++++....+
T Consensus 174 i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 174 IYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 33332 999999 8999999987765
No 92
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.62 E-value=1.2e-15 Score=139.99 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=71.5
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHh
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~ 188 (687)
|+|+|+|||||+|++++.- .+..+.+++.++ ..+ .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~lg~---------~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLGF---------QHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHcCC---------CcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 6899999999999554421 123345544332 123 5666655 9999999999999999888762
Q ss_pred hcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHH
Q 005624 189 QKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 227 (687)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~ 227 (687)
+.+||||+||++| ++||.+++++.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999998865
No 93
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.61 E-value=7.4e-16 Score=158.23 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=105.5
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEE
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 542 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImI 542 (687)
..|.|||+|.+. ..++++|+|+++ ...|.+|+||.++.+|+ .+.+..+.|.|.++. ...+++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~--------~~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH--------GDEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC--------CCCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 359999999875 347788877532 11388999999887766 456666788888764 35789999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 622 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e 622 (687)
|+||||||+++++++.... .++++|||+|+++ |.++.+++. ..+++.+.++++. .......+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA-------GVEVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999976421 4799999999985 554433321 2355555443332 1111100000
Q ss_pred chHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 623 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 623 ~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
. .........+|+||| ++|++.+++.|.+
T Consensus 191 ---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 ---A-LAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred ---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0 001134579999999 8999999887764
No 94
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.60 E-value=4.5e-15 Score=140.84 Aligned_cols=141 Identities=20% Similarity=0.272 Sum_probs=92.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCC-CCCCCCchHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTy-G~G~~pdna~~F 182 (687)
|+++.|+|.|+||||++|+++|...+.+......+..+++.++..++. ..+.....+|+++||| |.|++|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~- 76 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDV- 76 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCcc-
Confidence 467999999999999999999998775421011223466665543211 1245667899999999 88877766544
Q ss_pred HHHHHhhc---CCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHH
Q 005624 183 YKWFTEQK---EGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 183 ~~~L~~~~---~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (687)
+|+.+.. .......++.+||||+||++| ++||.+|+++++. .+..-++.. +-.++.+|++.-.+.|
T Consensus 77 -~~vp~~v~dFL~~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~f----El~GT~~Dv~~v~~~~ 146 (154)
T PRK02551 77 -EILTTPLGDFIAYHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLADF----ELRGTPSDIERIAAII 146 (154)
T ss_pred -ccchHHHHHHHcchhhhhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEEe----eccCCHHHHHHHHHHH
Confidence 3222110 001123678899999999999 8999999999986 465555443 2335566665544443
No 95
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.59 E-value=6.2e-15 Score=177.57 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=122.3
Q ss_pred CChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEee
Q 005624 449 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~ 526 (687)
..+|||+.+..+ ....|+|||+|.+.. .+.+.|+|+.+ |..|.+|.++.+|+. + .|..+.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecCC
Confidence 347999864432 223499999998743 46788877533 777888988888763 4 255566
Q ss_pred CCcc-cCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHH---HHHHHHcCC-Cc
Q 005624 527 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE---LNNFVQSGA-LS 600 (687)
Q Consensus 527 ~~F~-lp~-~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~de---l~~~~~~g~-~~ 600 (687)
|+|. ++. ...++++|||+|+||||+++++++....+ .+++||||+|+++ |.+|.++ |+++++... ..
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 7664 443 23468999999999999999999876532 4799999999986 8888766 455665433 33
Q ss_pred EEEEEEecCCC--CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 601 QLIVAFSREGP--TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 601 ~l~~afSr~~~--~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+++++ +.++. .+++|++.+.+........- .....||+||| ++|++.|.+.|.+.
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 44444 44432 46788876543211100000 01357999999 99999999977543
No 96
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.53 E-value=4.8e-14 Score=155.65 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=113.2
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..+++|+|+|+|+|||||++|+.|++.+.+...++.++++++.+.+.+ ++..++.+++.+||++|||+.|.+| .+..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~--~i~~~~~~~d~ii~GspT~~~~~~~-~~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKN--DIITEVFKSKAILVGSSTINRGILS-STAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHH--HHHHHHHhCCEEEEECCCcCccccH-HHHH
Confidence 356889999999999999999999999973222356788999887653 2334566799999999999888775 5999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPE 259 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~ 259 (687)
|++++... .++++++++|| +|.|+|.+.+.+.++|+++|++.+.+.....-.. ...+.+.+|.++|.+.
T Consensus 322 ~l~~l~~~-----~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 322 ILEEIKGL-----GFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHHhhcc-----CcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998764 48899999999 4899999999999999999999887643332221 2234557777776543
No 97
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.51 E-value=1e-13 Score=129.39 Aligned_cols=122 Identities=21% Similarity=0.362 Sum_probs=88.4
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCC----CCCCchHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAA 180 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~----G~~pdna~ 180 (687)
+.+.|+|.|.||||++||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+...
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~ 63 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVI 63 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHH
Confidence 3578999999999999998885531 234554321 24456678999999999 69999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCc---HHhHHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI---EDDFSAWRELV 256 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~---e~~f~~W~~~l 256 (687)
+|++...+ ....++|||+||++| ++||.+++.+.+++. ...++.. +..+. .+.+.+|.+++
T Consensus 64 ~Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l~k~----El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 64 RFLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLLYRF----ELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred HHHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeEEEE----ecCCCHHHHHHHHHHHHHH
Confidence 99877443 246899999999999 899999999999875 2222222 22222 34567787777
Q ss_pred HH
Q 005624 257 WP 258 (687)
Q Consensus 257 ~~ 258 (687)
|.
T Consensus 129 ~~ 130 (134)
T PRK03600 129 WQ 130 (134)
T ss_pred Hh
Confidence 65
No 98
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.50 E-value=1.3e-13 Score=155.18 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=113.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+++|+|+|+|+|||||++|+.|++.+++.+.++.+++.++++.+.++ ...++..++.+||++|||++|.+| .+..|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 467899999999999999999999999877544567889998877532 233445689999999999777766 69999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCC--CCcHHhHHHHHHHHHHHH
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L 260 (687)
++.+... .++|+++++|| +|.|+|.+.+.+.++|+.+|++.+.+ ...... ....+.+.++.+.|.+.+
T Consensus 327 l~~l~~~-----~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~~~-l~~~~~P~ee~~~~~~~~g~~la~~~ 396 (479)
T PRK05452 327 LEEITGL-----RFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMSLS-LKAKWRPDQDALELCREHGREIARQW 396 (479)
T ss_pred HHHhhcc-----CcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEecc-EEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9988754 48999999999 57899999999999999999997532 222221 123445567777776655
Q ss_pred H
Q 005624 261 D 261 (687)
Q Consensus 261 ~ 261 (687)
.
T Consensus 397 ~ 397 (479)
T PRK05452 397 A 397 (479)
T ss_pred h
Confidence 4
No 99
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.50 E-value=6e-14 Score=170.48 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=117.5
Q ss_pred ChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhh-cccCCCCCCCCCcee-eEEEee
Q 005624 450 PLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWA-PIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L-~~~~~~~~~~~~~~~-~v~v~~ 526 (687)
-+|||+.+.++. ...|+|||++.+.. .+.+.|.++. .|..|.|| .++.+|+. + .+..+.
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~Gd~------l~~v~GPl 90 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAGDT------FEDFVGPL 90 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCCCE------EeeeecCC
Confidence 479998654332 23589999997642 4667776643 38889998 57777653 3 344455
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.... ..++++|||+|+||||+++++++....+ .+++++||+|+++ +.+|.+||+.+.. +++++
T Consensus 91 G~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~- 156 (1006)
T PRK12775 91 GLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC- 156 (1006)
T ss_pred CCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE-
Confidence 6554332 2468999999999999999999865432 4689999999996 8999999987653 23333
Q ss_pred ecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+.+++ .+++|++.+.+... . .....||+||| ++|++.|.+.+.+
T Consensus 157 tddgs~G~~G~vt~~l~~~l~----~-~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 TDDGSYGKPGFVTAALKEVCE----K-DKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred ECCCCCCCCCChHHHHHHHhc----c-CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 33332 46788876654211 0 12347999999 8999999997754
No 100
>PRK05569 flavodoxin; Provisional
Probab=99.48 E-value=3.9e-13 Score=126.90 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=94.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-chHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-dna~~F 182 (687)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+++.++.+.+. .++.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 468999999999999999999999998765 4567888887764 3577899999999999877764 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
++.|... .++++++++||.+...+ +.+.+.+.+.|++.|++.+.+
T Consensus 73 ~~~l~~~-----~~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFKLT-----PNENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhhcc-----CcCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee
Confidence 9998653 36899999999753332 456788889999999987655
No 101
>PRK05568 flavodoxin; Provisional
Probab=99.48 E-value=3.5e-13 Score=127.35 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=92.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-chHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-dna~~F 182 (687)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+. .++..++.+||++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 568999999999999999999999998765 4578888887764 3578899999999999888864 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEecc-CCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLG-NRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlG-ds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
++.+.. .++++++++||.. .+. ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~~------~~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESISS------LVKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhhh------hhCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCC
Confidence 988753 3689999999972 211 235688888899999887765
No 102
>PLN02292 ferric-chelate reductase
Probab=99.30 E-value=1.3e-11 Score=143.06 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=110.9
Q ss_pred hHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC
Q 005624 451 LGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 451 ~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
+||++-..+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++.....++.|..+.|
T Consensus 354 PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG 422 (702)
T PLN02292 354 PTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPYG 422 (702)
T ss_pred CCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCcc
Confidence 45544333353 4679999999985445778877652 377788887764433221111233444556
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHH-------HHHcCCC
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGAL 599 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~-------~~~~g~~ 599 (687)
.+..+.....+++|||+|+||||+++++++..+..... ....++.|+|+.|+++ |.++.|++.. +.++ ..
T Consensus 423 ~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~-~~ 500 (702)
T PLN02292 423 PASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF-ID 500 (702)
T ss_pred CCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc-CC
Confidence 66544333468999999999999999999987653211 1125899999999997 8888765543 2233 34
Q ss_pred cEEEEEEecCCCCc-cccchhhhcchHHHHhcc-----cCCcEEEEECCc
Q 005624 600 SQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 643 (687)
Q Consensus 600 ~~l~~afSr~~~~k-~yVq~~l~e~~~~v~~~i-----~~~~~iYvCG~a 643 (687)
.++.+.++|+.+.+ .|-++ ..+.+.+.+ .+...+.+|||.
T Consensus 501 ~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 501 IQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred ceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 47788888876432 22222 222332322 256789999994
No 103
>PRK06242 flavodoxin; Provisional
Probab=99.29 E-value=1.7e-11 Score=116.81 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=86.9
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 105 ~~v~I~YgSq-tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|+++|+|.|+ ||||+.+|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 8999999999999883 25666665443 3467889999999999 799999999998
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccc
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~ 236 (687)
+.+.. +.++++++||.+......+ .+.+.+.|+.+|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEE
Confidence 87752 5789999999876654332 7899999999999977653
No 104
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.28 E-value=1.5e-11 Score=143.02 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=114.5
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCC----CC-CCCCCcee
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----ME-KSNDCSWA 520 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~----~~-~~~~~~~~ 520 (687)
..+|||+..-+|. .+.|+|||+|+|..+++.+.++|+.. |-.|+.|.+... .+ ....+..+
T Consensus 339 f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~v 407 (722)
T PLN02844 339 YAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIPV 407 (722)
T ss_pred cCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceEE
Confidence 3467776544454 35799999998865556777776532 333555543321 11 11111134
Q ss_pred eEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHH-----HH
Q 005624 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNN-----FV 594 (687)
Q Consensus 521 ~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~-----~~ 594 (687)
.|..+.|.|.++.....+++|||+|||||||++++++.....+. .....++.|+|++|+.+ |..|.+++.. +.
T Consensus 408 ~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 408 AIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQSS 486 (722)
T ss_pred EEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhHH
Confidence 44445677765544457899999999999999999998764321 11235799999999997 9999999863 22
Q ss_pred HcCCCcEEEEEEecCCCCccccchhhhcc--hHHHHhcccCCcEEEEECCch
Q 005624 595 QSGALSQLIVAFSREGPTKEYVQHKMMEK--SSDIWNMLSEGAYLYVCGDAK 644 (687)
Q Consensus 595 ~~g~~~~l~~afSr~~~~k~yVq~~l~e~--~~~v~~~i~~~~~iYvCG~a~ 644 (687)
+. ...+++...+|+......+++.+..- .+.++ +-.+...+.+||+..
T Consensus 487 ~~-~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 487 NQ-LNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLES 536 (722)
T ss_pred Hh-cCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCc
Confidence 22 24477777899865544555555441 12222 223557899999943
No 105
>PLN02631 ferric-chelate reductase
Probab=99.25 E-value=1.4e-11 Score=142.69 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=102.9
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCC-CCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~-~~~~~~~~~~~v~v 524 (687)
.-+||++...+|. .+.|+|||+|+|...++.++++|+. .|..|++|.+... +++ ...+.+..
T Consensus 335 ~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~VeG 400 (699)
T PLN02631 335 YTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVSTEG 400 (699)
T ss_pred CCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEEEC
Confidence 3467766444454 4669999999986555778887752 4778999977443 221 11233444
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHH------HHcC
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQSG 597 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~------~~~g 597 (687)
+.|.|..+.....++||||+|+||+|+++++++.......+ .+.+++.|+||.|+.+ |.+|.||++.+ .+ .
T Consensus 401 PYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~-~ 478 (699)
T PLN02631 401 PYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS-R 478 (699)
T ss_pred CCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-c
Confidence 56766655444568999999999999999999987653221 1235899999999997 99999999863 22 2
Q ss_pred CCcEEEEEEecCCC
Q 005624 598 ALSQLIVAFSREGP 611 (687)
Q Consensus 598 ~~~~l~~afSr~~~ 611 (687)
...++....+|+++
T Consensus 479 ~ni~i~iyVTR~~~ 492 (699)
T PLN02631 479 LNLRIEAYITREDK 492 (699)
T ss_pred CceEEEEEEcCCCC
Confidence 35578888899754
No 106
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.09 E-value=3e-10 Score=111.64 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|.||||+++|+.|++.+.. + ..++++++++... .++..++.+||++||| .|.++..+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 579999999999999999999999975 4 4567888877653 2477899999999999 8999999999987
Q ss_pred HHHhhcCCCCCcCCceEEEEecc
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlG 207 (687)
.+.. .|+++++++|++|
T Consensus 71 ~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HHHH------HhCCCeEEEEEec
Confidence 6653 4899999999988
No 107
>PRK07116 flavodoxin; Provisional
Probab=99.06 E-value=9e-10 Score=106.49 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=87.0
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-----------------------hhHHHhccCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------------------DEYEEKLKKE 160 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------------------~~~~~~l~~~ 160 (687)
||+++|+|.|.||||+.+|+.|++.+.... .++.+...|...+ .....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 688999999999999999999999986421 2443333332110 0012356788
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
+.++|++|+| .|.+|..+..|++.+ .+.++++++|+. |.+.+ +.+...+.+.+ +...+.+ |..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~---~~~~~~~-~~~ 141 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSY---PDANWKE-GRL 141 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHC---CcCcccc-Cee
Confidence 9999999999 588999988887643 378899999998 66654 33444555543 3222222 111
Q ss_pred cCCCCcHHhHHHHHHHH
Q 005624 240 DDDQCIEDDFSAWRELV 256 (687)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (687)
-.....++++++|.+++
T Consensus 142 ~~~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 142 LNGGASKEEIKEWINKL 158 (160)
T ss_pred ecCCCcHHHHHHHHHHc
Confidence 11112366799998764
No 108
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.04 E-value=1.9e-09 Score=108.05 Aligned_cols=126 Identities=18% Similarity=0.121 Sum_probs=94.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcchh--------------HHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDE--------------YEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~--------------~~~~l~~~~~vi~~~s 168 (687)
|++|+|+|+|.+|||+++|+.+++.+.+ .+ ..++++++.+..+++.. -.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999986 54 56788888543321110 0356788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
|| .|.+|..++.|++++..... ...+.++.+++|+........--...+.+...|..+|..-+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 99 99999999999999865321 23588999999997654432333445666667778888644
No 109
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.03 E-value=2.2e-09 Score=107.32 Aligned_cols=126 Identities=19% Similarity=0.100 Sum_probs=95.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchh------------H--HHhccCCCeEEEEeeCC
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATY 170 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~------------~--~~~l~~~~~vi~~~sTy 170 (687)
.+|+|+|+|++|+|+++|+.+++.+++.. +..++++++.+...++.. . .+++.+++.+||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~-g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVD-GAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 36999999999999999999999997641 255778887654321100 0 14577899999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|.++..++.|++++..... ...+.++..++|+.+.........+...+...|..+|..-+
T Consensus 80 -~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred -ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 89999999999999875321 22588999999998765555555666777777788888644
No 110
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=99.03 E-value=5.8e-10 Score=101.91 Aligned_cols=115 Identities=26% Similarity=0.398 Sum_probs=71.2
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCC----CCchHHHHHH
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~----~pdna~~F~~ 184 (687)
|+|.|.||||++|+++|...+... . +.+.+.+. .+.-...+|++++|||.|+ .|+...+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~------~-i~~~~~~~-------~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI------R-IPIREISP-------DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE------E-E-SSCTTS-------TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc------c-cccccccc-------cccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999999887654321 1 22222111 1334466899999999999 9999999988
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (687)
+-.+. ....+|+|.||++| +.||.+|+++.+.+ +...++.. +-.+.++|++.-
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 66542 35568999999999 89999999999865 54444433 233556665543
No 111
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.87 E-value=8.4e-09 Score=94.17 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=85.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCC----CCCchHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAA 180 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G----~~pdna~ 180 (687)
+.+.|+|.|.||||.+|.++|. +. ...+.+...++ .+.-...+|+++||||.| +.|....
T Consensus 1 ~~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi 64 (141)
T COG1780 1 MMLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVI 64 (141)
T ss_pred CceEEEEEecCccHHHHHHHhC--CC----ceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHH
Confidence 3578999999999999999887 11 11112211111 123345689999999999 9999988
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHh---HHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD---FSAWRELV 256 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~---f~~W~~~l 256 (687)
+|+..-. ...+..+|.|.||++| +.||.+|+.+.+++ |-.-++..-+ .++.+| +.+|..++
T Consensus 65 ~FLn~~~--------Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL----~GT~~Dv~~v~~~v~~~ 129 (141)
T COG1780 65 RFLNNEH--------NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFEL----LGTAEDVAAVRKGVTEF 129 (141)
T ss_pred HHhcccc--------chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEec----cCCHHHHHHHHHHHHHH
Confidence 7764322 3457789999999999 89999999999864 5555544322 234444 66777777
Q ss_pred HHH
Q 005624 257 WPE 259 (687)
Q Consensus 257 ~~~ 259 (687)
|+.
T Consensus 130 ~~~ 132 (141)
T COG1780 130 WKR 132 (141)
T ss_pred HHh
Confidence 763
No 112
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.85 E-value=1.7e-08 Score=95.67 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=70.4
Q ss_pred EEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
+|+|.|.||||+++|+.|++.|.+.+ ..+|+.+...+ ..++..++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999998653 45666654211 13578999999999999 7999999999999876
Q ss_pred hhcCCCCCcCCceEEEEeccCC
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNR 209 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds 209 (687)
. .|+++++++|.+|-.
T Consensus 71 ~------~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 D------NLKNKKVALFSVGGS 86 (143)
T ss_pred H------HHcCCcEEEEEEeCC
Confidence 4 488999999998744
No 113
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.80 E-value=2.1e-08 Score=107.93 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=99.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
+|.|+|.|++|+|+.+|++|++.|.+.| +.+.++++.+-+. .++.+.+...+.+++++||+ ++++++.+..++..
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~~ 322 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALGY 322 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHHH
Confidence 8999999999999999999999999987 4567888877654 45667888999999999999 67777788999888
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+... ..+++..+||| +|.|-..+.+.+.+.|+++|-+...+
T Consensus 323 v~~~-----~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 323 VLAL-----APKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHhc-----cCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 8764 36778899999 78888999999999999999887665
No 114
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.80 E-value=2e-09 Score=108.21 Aligned_cols=162 Identities=18% Similarity=0.281 Sum_probs=95.2
Q ss_pred cccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCC---CCCCCeEE
Q 005624 465 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPIIM 541 (687)
Q Consensus 465 R~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~---~~~~PiIm 541 (687)
|.||.|+......+.++|.|+. .-.|+.|+|++.-...|+ .+.+..+.|+|.... +.++|+++
T Consensus 202 ~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KVGD-----~v~~S~PAG~F~~~r~~~~~N~PL~~ 267 (385)
T KOG3378|consen 202 REYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKVGD-----IVGVSPPAGNFVYKRSEENVNRPLLC 267 (385)
T ss_pred HHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccccc-----eeeccCCCccceeehhhhccCCceEE
Confidence 5555555444345667776653 345999999987666554 345666678997653 45799999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEEEEEecCCC--Cccccch
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLIVAFSREGP--TKEYVQH 618 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~~afSr~~~--~k~yVq~ 618 (687)
.++|.||+|+++++++.+.-. ..| .+..-++++..+. .+.++.--||.+.. .+.-|..
T Consensus 268 ~a~GiGiTPLi~iiE~~~~C~-------------~~R------P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~IV~~ 328 (385)
T KOG3378|consen 268 FAGGIGITPLIPIIETALLCY-------------SSR------PFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQIVDE 328 (385)
T ss_pred ecCCcCccccHHHHHHHHhcC-------------CCC------cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 999999999999999876421 222 1112222221110 00011111222211 2333333
Q ss_pred hhhc--chHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHH
Q 005624 619 KMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 660 (687)
Q Consensus 619 ~l~e--~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 660 (687)
.+.. +.+.+-++--..++||.||| ...++.|...|.++..+
T Consensus 329 ~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 329 VMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred hhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 2221 22333333346799999999 88999999999887543
No 115
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.58 E-value=2.3e-07 Score=89.52 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=73.0
Q ss_pred EEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
+|+|.|.||||+++|+.|++.|.. ..++++++... .+.++++++++..+| .|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999998864 25667766552 267899999999999 799999988886554
Q ss_pred hhcCCCCCcCCceEEEEeccCC--chHHHHHHHHHHHHHHHH
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNR--QYEHFNKIAKVVDEILAN 227 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds--~Y~~f~~~ak~ld~~L~~ 227 (687)
+++++++||.--. .=+|+....+++.+.+.+
T Consensus 66 ---------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 ---------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred ---------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 5688999985311 115677777777766644
No 116
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.56 E-value=3.9e-07 Score=86.89 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=95.6
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCC---------------CcchhHHHhccCCCeEEEEe
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------~~~~~~~~~l~~~~~vi~~~ 167 (687)
|+|+|++||.. |+|+.+|+.+++.+++.+ ..++++|+.++. .+-.++.+++...+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 999999999999998874 668899999862 11122346688899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.... ..+...+...|..+|+.-+-
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 999 99999999999999973 11236899999999887654422 33567777778888887543
No 117
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.55 E-value=3.5e-07 Score=87.49 Aligned_cols=116 Identities=19% Similarity=0.329 Sum_probs=67.6
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC--CCcEEEEEEecCCCCc-
Q 005624 538 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSREGPTK- 613 (687)
Q Consensus 538 PiImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g--~~~~l~~afSr~~~~k- 613 (687)
-++|||+|+||+|+.+++++...... ......++.|+|-+|+.+.=..|.++|+++.... ...++.+..+++....
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~~ 82 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAPS 82 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT------
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccccc
Confidence 38999999999999999999987654 2234578999999999873347886666554331 2446677666653210
Q ss_pred -----cc-----------------------cchhhhcchHHHH-hc----ccCCcEEEEECCchhhHHHHHHHH
Q 005624 614 -----EY-----------------------VQHKMMEKSSDIW-NM----LSEGAYLYVCGDAKSMARDVHRTL 654 (687)
Q Consensus 614 -----~y-----------------------Vq~~l~e~~~~v~-~~----i~~~~~iYvCG~a~~M~~~V~~~L 654 (687)
.. ....-+-+.+.+. +. -...-.|++||| ++|.++|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP-~~m~~~vr~~v 155 (156)
T PF08030_consen 83 NSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGP-PSMVDDVRNAV 155 (156)
T ss_dssp -------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES--HHHHHHHHHHH
T ss_pred chhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCc-HHHHHHHHHHh
Confidence 00 0000111222222 22 123568999999 99999998864
No 118
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.48 E-value=2.9e-07 Score=86.33 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=83.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|++|+|.++|+.|+..|.+.| ..+++.|+..... -++.+++.+|++.|.| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 68999999999999999999999999887 4567777765441 2578899999999999 9999999888888
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHH---HHHHHHHHHHHHHcCCc
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHF---NKIAKVVDEILANQGAK 231 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f---~~~ak~ld~~L~~lGa~ 231 (687)
.-.+ .|.+++.|+|.++ -.|..+ -..-..+++.|.+--.+
T Consensus 72 k~~e------~L~~kP~A~f~vn-l~a~k~k~~~e~~~yv~kfl~~~~Wq 114 (175)
T COG4635 72 KHAE------ALSTKPSAFFSVN-LTARKEKRTPETNSYVRKFLMKSPWQ 114 (175)
T ss_pred HHHH------HHhcCCceEEEee-hhhcccccCchHHHHHHHHHhcCCCc
Confidence 7766 4889999999875 223222 22233455555554333
No 119
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.38 E-value=1.5e-06 Score=83.62 Aligned_cols=132 Identities=17% Similarity=0.323 Sum_probs=74.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---c------ch--h------------HHHhccCCCe
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---E------ED--E------------YEEKLKKENI 162 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~------~~--~------------~~~~l~~~~~ 162 (687)
+++|+|=|+||||+.+|+.|++.+... .+++...+.|.. + .. + ...++.+|+.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999876432 234444444443 0 00 0 0125688999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccccC
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~ 241 (687)
++++.|+| -|.+|..+..|++.. .++|++++.|-. |.+.+ ..+.+.+.+.+. +|+-.-.+....+
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~--------~~~gK~v~~F~T~ggs~~---~~~~~~l~~~~~--~a~i~~g~~~~~~ 142 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY--------DFSGKTVIPFCTSGGSGF---GNSLEDLKKLCP--GATILEGLAINRG 142 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT--------TTTTSEEEEEEE-SS--C---HHHHHHHHHH-T--TSEE---EE---S
T ss_pred EEEechHH-cCCCCHHHHHHHHhc--------CCCCCcEEEEEeeCCCCh---hHHHHHHHHHCC--CCEeecCeEEeCC
Confidence 99999999 899999988886432 488999999954 43333 333444444331 3432222222111
Q ss_pred CCCcHHhHHHHHHHH
Q 005624 242 DQCIEDDFSAWRELV 256 (687)
Q Consensus 242 ~~~~e~~f~~W~~~l 256 (687)
+. .++++.+|.++|
T Consensus 143 ~~-~~~~i~~Wl~~i 156 (156)
T PF12682_consen 143 SV-SEEEIKEWLKKI 156 (156)
T ss_dssp ----HHHHHHHHHHT
T ss_pred Cc-CHHHHHHHHHhC
Confidence 11 578899998764
No 120
>PRK06934 flavodoxin; Provisional
Probab=98.14 E-value=2.6e-05 Score=78.94 Aligned_cols=133 Identities=12% Similarity=0.201 Sum_probs=79.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------------cchhHHHhccCCCeEEEE
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIVFFF 166 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~vi~~ 166 (687)
.++|.=|+.||||+.+|+.|++.+... -.++...+.|.. +-.....++..++.++++
T Consensus 61 s~~~~~~~~~GnTk~vAe~Ia~~~gaD----l~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG 136 (221)
T PRK06934 61 SILQKNGEVLGSTQYVAQIIQEETGGD----LFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIG 136 (221)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHCCC----EEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEE
Confidence 345555556699999999999987542 133433443422 111112467899999999
Q ss_pred eeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccc-ccc-ccCC-
Q 005624 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-VGL-GDDD- 242 (687)
Q Consensus 167 ~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~-~g~-gD~~- 242 (687)
.|.| -|.+|.-...|++.. .++|++++.|-. |-+.. ....+.+.+.. -+|+.+.+ +.. +++-
T Consensus 137 ~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggsg~---g~s~~~i~~l~--~~a~~v~~Gl~i~~~~~~ 202 (221)
T PRK06934 137 YPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGSRF---SDSLREIKRLQ--PNAQLVTQGLAISRNDVT 202 (221)
T ss_pred cchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCCCc---cchHHHHHHHc--CCcceeccceeeecCccc
Confidence 9999 899999988886444 488999999964 22333 22233333322 13322322 111 2221
Q ss_pred -CCcHHhHHHHHHHH
Q 005624 243 -QCIEDDFSAWRELV 256 (687)
Q Consensus 243 -~~~e~~f~~W~~~l 256 (687)
...++++..|.+++
T Consensus 203 ~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 203 DDDTPKEIINWLNTL 217 (221)
T ss_pred ccchHHHHHHHHHHc
Confidence 12478899998764
No 121
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.06 E-value=0.00013 Score=72.63 Aligned_cols=120 Identities=11% Similarity=0.162 Sum_probs=93.7
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-----------hhHHHhccCCCeEEEEeeCCC
Q 005624 105 QKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (687)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTyG 171 (687)
|+|+++.||- .+++..+++.+.+.+.+.+ ..++++|+.++..++ ..+.+.+...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 5799999997 4889999999999998765 567778887665422 12335677889999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|..|.-.+.|++|+.. ..|.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 99999999999999953 25899999999998 4455555444566778888998854
No 122
>PRK00170 azoreductase; Reviewed
Probab=97.92 E-value=0.00029 Score=70.40 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=102.1
Q ss_pred CceEEEEEecC--c-chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------------------------chhH
Q 005624 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (687)
Q Consensus 104 ~~~v~I~YgSq--t-Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (687)
||+|+|++||- . |+|..+|+.+.+.+++.+++..++++|+.+.+.. ..++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999998754566788888654321 0112
Q ss_pred HHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEec-cCCc-hHHHHHHHHHHHH
Q 005624 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGL-GNRQ-YEHFNKIAKVVDE 223 (687)
Q Consensus 154 ~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGl-Gds~-Y~~f~~~ak~ld~ 223 (687)
.+.+...+.+||++|.| .+..|.-.+.|++++.... .+...++++++.++.. |... ...+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 34577889999999999 9999999999999985310 1123578999888875 4321 1112344555667
Q ss_pred HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
.|.-+|.+.+-.+.....+. ..+.-.+|.++....+.+
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~~ 197 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAADE 197 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHHH
Confidence 77778988544433221111 223344555554444433
No 123
>PRK01355 azoreductase; Reviewed
Probab=97.82 E-value=0.00056 Score=68.55 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=106.7
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------------chhHHHhccCCCe
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------EDEYEEKLKKENI 162 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------~~~~~~~l~~~~~ 162 (687)
|++|+|+.||-. |++..+|+.+.+.+++.+....++++|+.+.... ...+.+.+...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 679999999985 8899999999999988665566788888665431 1123456788899
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhc--------CC---CCCcCCceEEEEec-cCCc-hHHHHHHHHHHHHHHHHcC
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQK--------EG---GEWLQKLKYGVFGL-GNRQ-YEHFNKIAKVVDEILANQG 229 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~---~~~l~~~~~aVFGl-Gds~-Y~~f~~~ak~ld~~L~~lG 229 (687)
+||++|.| .+.+|.-.+.|++++.... .. ...+.+++..|+-. |... +..+.....-+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999986421 01 12477888777643 3222 1123445566777787889
Q ss_pred CccccccccccCCC-CcH-HhHHHHHHHHHHHHHhh
Q 005624 230 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 263 (687)
Q Consensus 230 a~~l~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 263 (687)
.+.+..+..+..+. ..+ +....|.+.-.+++.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98665544433222 111 22667776655555443
No 124
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=97.80 E-value=0.00049 Score=67.25 Aligned_cols=121 Identities=12% Similarity=0.207 Sum_probs=90.5
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-----------hhHHHhccCCCeEEEEeeCCCC
Q 005624 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYGD 172 (687)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTyG~ 172 (687)
+|+++.||- .|++.++++.+.+.+.+.+ ..++++|+.++...+ ..+.+++...+.+||++|.| .
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 478899995 7889999999999998765 346677776543211 12335567889999999999 9
Q ss_pred CCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 173 GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 173 G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
|.+|...+.|++|+... .+.++.+++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 99999999999998532 4889999988887 455555544345788888999965433
No 125
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.73 E-value=0.00019 Score=84.13 Aligned_cols=183 Identities=15% Similarity=0.295 Sum_probs=99.8
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCC--CC-CCC----CceeeEEEeeCCcccCC
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SND----CSWAPIFVRQSNFKLPA 533 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~--~~-~~~----~~~~~v~v~~~~F~lp~ 533 (687)
.++-++|||+|+| +++.+.+.++.. |--|+-|.+.... .+ ... ..++.|..+.|.=.-+-
T Consensus 397 ~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~ 463 (646)
T KOG0039|consen 397 KLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDV 463 (646)
T ss_pred ccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhh
Confidence 4577999999999 467888877644 3334444332220 00 000 11233333322111111
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCC------------CCCcEEEEEeeccCCccc-ccHHHHHHHHH---cC
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IYEDELNNFVQ---SG 597 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~------------~~~~~~LffG~R~~~~D~-ly~del~~~~~---~g 597 (687)
..-.-++|||+|.|++||.+++++.....+.+. ..+++..++-||... ++ .+.+.+.+..+ .+
T Consensus 464 ~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf~~~l~~v~~~~~~~ 542 (646)
T KOG0039|consen 464 FKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWFKGLLTEVEEYDSSG 542 (646)
T ss_pred hhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHHHHHHHHHHHHHhcC
Confidence 112347999999999999999999987654332 346778888898876 54 55665555542 22
Q ss_pred CCcEEEEEEec---CC-CCc----------------cccchh------hhcchHHHHhcc--c-CC--cEEEEECCchhh
Q 005624 598 ALSQLIVAFSR---EG-PTK----------------EYVQHK------MMEKSSDIWNML--S-EG--AYLYVCGDAKSM 646 (687)
Q Consensus 598 ~~~~l~~afSr---~~-~~k----------------~yVq~~------l~e~~~~v~~~i--~-~~--~~iYvCG~a~~M 646 (687)
.. +++...+. .. ..+ -.++.. -+-+-+++++-+ . ++ --|+.||| +.|
T Consensus 543 ~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp-~~l 620 (646)
T KOG0039|consen 543 VI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGP-PGL 620 (646)
T ss_pred Cc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCC-HHH
Confidence 22 33333321 11 111 111111 111223343333 1 22 47999999 999
Q ss_pred HHHHHHHHHHHHH
Q 005624 647 ARDVHRTLHTIVQ 659 (687)
Q Consensus 647 ~~~V~~~L~~i~~ 659 (687)
.+.+++...+...
T Consensus 621 ~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 621 VKELRKLCNDFSS 633 (646)
T ss_pred HHHHHHHHHhccc
Confidence 9999887776543
No 126
>PRK09739 hypothetical protein; Provisional
Probab=97.72 E-value=0.00088 Score=67.10 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=101.8
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---------------------cchhHHHhccCC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (687)
||+|+|++||- .|++..+++.+.+.+++.+ ..++++|+.+... +-..+.+.+...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 78999999987 5788999999999998775 4567777754321 112344668889
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcC---CCCCcCCceEEEEeccCCchHHHHH------HHHHHH-HHHHHcCC
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQYEHFNK------IAKVVD-EILANQGA 230 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y~~f~~------~ak~ld-~~L~~lGa 230 (687)
+.+||++|.| .+.+|.-.+.|++++..... ....|.+++..++......|++|.. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 99999999999998753210 1134788888877653334444322 222233 33334576
Q ss_pred ccccccccccCC-----CCcHHhHHHHHHHHHHHHHhh
Q 005624 231 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 231 ~~l~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 263 (687)
+.+-....+... ....+.++.|.++......++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 643222222211 234667889988877665543
No 127
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=97.68 E-value=0.00094 Score=65.41 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=87.6
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------cchhHHHhccCCCeEEEEeeCC
Q 005624 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------EEDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------~~~~~~~~l~~~~~vi~~~sTy 170 (687)
+|+++.||. .|++..+|+.+.+.+.+..+ ..++++|+.++++ +..++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 588999997 59999999999998865432 4567777765421 1123446678899999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|.+|.-.+.|++|+.. ..+.+++.++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 99999999999999853 248899999998875432 222233446667777887754
No 128
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.60 E-value=0.00013 Score=87.34 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=60.4
Q ss_pred CChHHHHHHHcC-----CC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p-----~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v 522 (687)
.-+|||+.+..+ .+ .||++||++.... .+.+.+++.+| |..|.+|+++.+|+. +.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSENEK------VVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEE
Confidence 347999854432 22 5689999997653 46799888766 889999999988763 445
Q ss_pred EEee-CCcccCCCCCCCeEEEecCCcchh
Q 005624 523 FVRQ-SNFKLPADAKVPIIMIGPGTGLAP 550 (687)
Q Consensus 523 ~v~~-~~F~lp~~~~~PiImIa~GTGIAP 550 (687)
..+. ..|.++. ...+++||+|.|+||
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 5553 4587764 346999999999998
No 129
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.57 E-value=0.0013 Score=65.70 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=108.4
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHHHhhcCCCeeEEecCCCC--------------CC-----cchhH-H-HhccCC
Q 005624 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDEY-E-EKLKKE 160 (687)
Q Consensus 105 ~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------~~-----~~~~~-~-~~l~~~ 160 (687)
|+|+|++||-.+ ++..+++.+.+.+++.++ ..++++||.+. .. .+... . +.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 56888999774 00 11111 2 567888
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcC----------CCCCcCCceEEEEe-ccCCch--H-------HHHHHHHH
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 220 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~----------~~~~l~~~~~aVFG-lGds~Y--~-------~f~~~ak~ 220 (687)
+.+||+.|.| .+.+|.-.+.|++.+-.... ....|+++++.++- .|...+ . .+......
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 89999999999998743211 12468899877764 554432 2 45566666
Q ss_pred HHHHHHHcCCccccccccccCC-CCcHHhHHHHHHHHHHHH
Q 005624 221 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 221 ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L 260 (687)
+...+.-.|.+.+-.+..++.+ ...++.+++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 7888888899988776655433 223777889988876544
No 130
>PRK13556 azoreductase; Provisional
Probab=97.56 E-value=0.0031 Score=63.59 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=103.5
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-----c------------------------c
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E------------------------E 150 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~------------------------~ 150 (687)
|++|+|+.||-. +++..+++.+.+.+++.+++..++++||.+.+. + .
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998876556788888853211 0 0
Q ss_pred hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCch-----HHHHHH
Q 005624 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQY-----EHFNKI 217 (687)
Q Consensus 151 ~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y-----~~f~~~ 217 (687)
.++...+...+.+||++|-| ++.+|.-.+.+++|+.... . ....|.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12234567789999999999 9999999999999997531 0 11358899999986632335 445555
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 218 ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
...+...|.-+|++.+-. ...+......+..+.+.++-...+.
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHH
Confidence 567778888889875432 2222111123344555554444443
No 131
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.08 E-value=0.0045 Score=62.43 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=83.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------------c-chhHHHhccCCCeEE
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------E-EDEYEEKLKKENIVF 164 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~-~~~~~~~l~~~~~vi 164 (687)
..|.+.|-| +|||+.+++.+++.+++.| +.++++.+.+++. | .++..+.+.+.|.+|
T Consensus 4 ~~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 4 LGINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eEEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 345666666 8999999999999999885 5567776665411 1 133345577889999
Q ss_pred EEeeCCCCCCCCchHHHHHHH-HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCc
Q 005624 165 FFLATYGDGEPTDNAARFYKW-FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAK 231 (687)
Q Consensus 165 ~~~sTyG~G~~pdna~~F~~~-L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~ 231 (687)
|++||| .|..+..++.|++. +.-.. ....|.++..++|..+.+.-.........+...+...|..
T Consensus 81 ~gsPvy-~g~vsa~~K~fiDR~~~~~~-~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~ 146 (207)
T COG0655 81 FGSPVY-FGNVSAQMKAFIDRSTGPLW-APGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMI 146 (207)
T ss_pred EeCCee-cCCchHHHHHHHhhcchhhc-ccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCe
Confidence 999999 99999999999998 43222 1235888888888776544322223445555555555544
No 132
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=96.87 E-value=0.00045 Score=60.79 Aligned_cols=66 Identities=24% Similarity=0.240 Sum_probs=48.5
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.++. ...|+|||+|.|. ..+.++|+|+.. ..|..|+||+++.+|+ .+.+..+
T Consensus 30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gP 93 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRGP 93 (99)
T ss_dssp STTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEEE
T ss_pred cCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEEc
Confidence 4678888665551 2359999999996 457899888643 4688999999987766 4677777
Q ss_pred eCCcc
Q 005624 526 QSNFK 530 (687)
Q Consensus 526 ~~~F~ 530 (687)
.|+|.
T Consensus 94 ~G~f~ 98 (99)
T PF00970_consen 94 YGNFT 98 (99)
T ss_dssp ESSEE
T ss_pred ccccC
Confidence 88885
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=96.69 E-value=0.099 Score=53.17 Aligned_cols=129 Identities=8% Similarity=0.007 Sum_probs=89.6
Q ss_pred cccCCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---cch------hHHHhccCCCeEEEEee
Q 005624 100 VDDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EED------EYEEKLKKENIVFFFLA 168 (687)
Q Consensus 100 ~~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~~------~~~~~l~~~~~vi~~~s 168 (687)
-...+++|+++.||.. =++..+|+.+++.+...+ ..++++|+.+++. +.. .+...+...+.+||++|
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TP 99 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSP 99 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCC
Confidence 3456789999999873 345678888888887553 5677787765432 111 12344567899999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
-| +|..|.--+.+++|+.........+.++.++|.|.+ .... --.+...+...|..+|+..+
T Consensus 100 EY-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~-g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 100 ER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ-SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred cc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh-HHHHHHHHHHHHHHCCCccc
Confidence 99 999999999999999753111124889999999854 1111 22355777888888888744
No 134
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=96.42 E-value=0.18 Score=49.98 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=97.4
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC----cchhHHHhccCCCeEEEEeeCCCCCCCCc
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vi~~~sTyG~G~~pd 177 (687)
..+|+++|++++-.+.....-+.+.+.++ .. ..+.+.||...-+ +-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~-~~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQ-QL--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHH-cC--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 45689999999988753222233333333 32 2467788765322 2222234578899999999999 888888
Q ss_pred hHHHHHHHHHhhc----CCCCCcCCceEEEEe-ccCCchHHHHH----------HHHHHHHHHHHcCCccccccccccCC
Q 005624 178 NAARFYKWFTEQK----EGGEWLQKLKYGVFG-LGNRQYEHFNK----------IAKVVDEILANQGAKRLVPVGLGDDD 242 (687)
Q Consensus 178 na~~F~~~L~~~~----~~~~~l~~~~~aVFG-lGds~Y~~f~~----------~ak~ld~~L~~lGa~~l~~~g~gD~~ 242 (687)
-.+.+++..-... ..+..|+|+++.+.- .|... +.|.. .-.-+...+.-.|.+-+-+....+..
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~-~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~ 157 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPE-SAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWAR 157 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCCh-HHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCC
Confidence 8888887665421 122358999987764 44433 23322 11222333334588877776666555
Q ss_pred CCcHHhHHHHHHHHHHHHHhhh
Q 005624 243 QCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 243 ~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
...+++.++|.++....|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~ 179 (184)
T PRK04930 158 RQSPEELASHARAYGDWLANPL 179 (184)
T ss_pred CCCHHHHHHHHHHHHHHHhhhh
Confidence 5567788888888777666543
No 135
>PRK13555 azoreductase; Provisional
Probab=96.26 E-value=0.22 Score=50.38 Aligned_cols=128 Identities=10% Similarity=0.140 Sum_probs=89.0
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC--------------------cch--------
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------EED-------- 151 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------~~~-------- 151 (687)
|++++++++|-. -.+..+|+.+.+.+++.++...++++||-+... .++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 567888888888888887656677788754211 000
Q ss_pred -hHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCch-H----HHHHH
Q 005624 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQY-E----HFNKI 217 (687)
Q Consensus 152 -~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y-~----~f~~~ 217 (687)
.+.+.+...+.+||++|-| ++.+|.-.+.|++|+.... . ....|++++..|++.....| . .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 1234567789999999999 8999999999999887521 1 12358999999997732335 2 22333
Q ss_pred HHHHHHHHHHcCCcc
Q 005624 218 AKVVDEILANQGAKR 232 (687)
Q Consensus 218 ak~ld~~L~~lGa~~ 232 (687)
...+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356667777778764
No 136
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=94.06 E-value=0.54 Score=46.49 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.3
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCC--CCC--------Cc-chhHHHhccCCCeEEEEeeCCC
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDID--DYA--------DE-EDEYEEKLKKENIVFFFLATYG 171 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~--------~~-~~~~~~~l~~~~~vi~~~sTyG 171 (687)
++|++++||.. -.+..+|+.+++.+...+. ..+...|++ -|+ ++ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57899999865 4566788888888776542 222222211 111 11 112334567789999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
+|..|.-.+..++|+... .+.++..++++.|.... +.-.+...+...|..+|+..+-
T Consensus 79 n~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 79 NGSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecc
Confidence 999999999999999753 58899988888654443 3334556777777778877553
No 137
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=93.46 E-value=2 Score=42.32 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=93.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC----cchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
|+|+++.-......+-+.|.+.+... ..+++.||.+..+ +-....+.+...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 88999998887666778888877743 2467888755322 1112234578899999999999 88899988888
Q ss_pred HHHHHhhc----CCCCCcCCceE-EEEeccCCc--h-----HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHH
Q 005624 183 YKWFTEQK----EGGEWLQKLKY-GVFGLGNRQ--Y-----EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 250 (687)
Q Consensus 183 ~~~L~~~~----~~~~~l~~~~~-aVFGlGds~--Y-----~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~ 250 (687)
++..-... ..+..|+|+++ .++-.|... | ..+.....-+...+.-.|.+-+-+..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 87654311 12235889876 455556542 3 122223344455555678887666544333333355566
Q ss_pred HHHHHHHHHHHh
Q 005624 251 AWRELVWPELDN 262 (687)
Q Consensus 251 ~W~~~l~~~L~~ 262 (687)
+..++..+.|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
No 138
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=91.85 E-value=1.9 Score=45.00 Aligned_cols=165 Identities=21% Similarity=0.339 Sum_probs=94.7
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeE
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 540 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiI 540 (687)
+..+|.|+|.+-.. ..+++.|-+.++ ...|..|+|-.+.++|+. +-|..+.+.+..+.. ..-++
T Consensus 84 r~~~R~YTiR~~d~-~~~e~~vDfVlH--------~~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVDA-AAGELDVDFVLH--------GEGGPASRWARTAQPGDT------LTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeeecc-cccEEEEEEEEc--------CCCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCC-cceEE
Confidence 34579999986532 234555444322 146999999999999873 455555666665543 45599
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhh
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 620 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l 620 (687)
|||==|++--+.++|++.-.. -+...|.-.+... |. .++. ....+ ++.... |++.. + ...+
T Consensus 148 LigDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~Wl~-r~~~~--~-~~ll 208 (265)
T COG2375 148 LIGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DELP---SPDDL-ELEWLA-RDDAP--T-EQLL 208 (265)
T ss_pred EeccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hccC---CCCce-eEEEec-CCCcc--c-hHHH
Confidence 999999998888888875321 2446677777664 43 1111 11222 344333 33211 1 1122
Q ss_pred hcchHHHHhc-c-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005624 621 MEKSSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 668 (687)
Q Consensus 621 ~e~~~~v~~~-i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~ 668 (687)
.+. +.+. + ..+.+++|.|- ..|++.+++ .+.++.|++...
T Consensus 209 ~~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk----~L~~e~g~dk~~ 250 (265)
T COG2375 209 AAA---LAQAALPAGDYYVWIAGE-ASAVKAIRK----FLRNERGFDKSR 250 (265)
T ss_pred HHH---HhcccCCCCceEEEEecc-HHHHHHHHH----HHhhhcCCCHHH
Confidence 221 1222 2 23479999998 667665555 445566776654
No 139
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=91.58 E-value=0.63 Score=44.64 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=82.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------chhH----HHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEY----EEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~----~~~l~~~~~vi~~~s 168 (687)
+.+|.|+|-|.+|.-+.+|+...+.+...+.. .++..+.+.-.+ +.+| .+.|.++|..+|+.|
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~ge--A~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGE--ATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCe--eEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccc
Confidence 35789999999999999999999988876643 233333221110 0011 345788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
|- -|.+|..++.||+.-... -....|.|+..++|=.+-+.= .+=- .+...-..|.-.| -.++|+|.-
T Consensus 79 TR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~-talta~t~LvHHG-mifVPlGYk 146 (203)
T KOG3135|consen 79 TR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQET-TALTAITQLVHHG-MIFVPLGYK 146 (203)
T ss_pred cc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHh-HHHHHHHHHHhcc-eEEEecccc
Confidence 99 899999999999852211 012359999999996654332 1111 1222222333344 457788753
No 140
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=88.25 E-value=9.8 Score=37.87 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=93.0
Q ss_pred ceEEEEEecCc-chHHHHHHHHHHHHHhhcCCCe-----eEEe----cCCC--CCCcchhHHHhccCCCeEEEEeeCCCC
Q 005624 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAI-----FKVV----DIDD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (687)
Q Consensus 105 ~~v~I~YgSqt-Gtae~~A~~la~~l~~~~~~~~-----v~v~----dl~~--~~~~~~~~~~~l~~~~~vi~~~sTyG~ 172 (687)
|+|+|+||--- ..+-..++.+.+.+.+.+..+. .... ...| +..|-..-.+.+...+.+||.-|.| =
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 68999999985 3334444444445544432110 0111 1122 3332222235678889999999999 6
Q ss_pred CCCCchHHHHHHHHHhhc----CCC----CCcCCceEEEEeccCCchHHHHHHHHH---------HHHHHHHcCCccccc
Q 005624 173 GEPTDNAARFYKWFTEQK----EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 235 (687)
Q Consensus 173 G~~pdna~~F~~~L~~~~----~~~----~~l~~~~~aVFGlGds~Y~~f~~~ak~---------ld~~L~~lGa~~l~~ 235 (687)
...|.-.+.+++..-..- ..+ ..|.|+++.++..-+..-+.|...+.. +.-.+.-.|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 777787777777654321 111 469999988887655543444443332 223344456655555
Q ss_pred cccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 236 VGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 236 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
.-.+..+...++...+|.+++-..|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 5555555566888999998887766654
No 141
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=86.75 E-value=0.26 Score=54.41 Aligned_cols=62 Identities=32% Similarity=0.545 Sum_probs=53.8
Q ss_pred EEeccCCch-H-----HHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHHHhhh
Q 005624 203 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 203 VFGlGds~Y-~-----~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~ 264 (687)
|||+||+.| + .|++-.|.+..+|.+++|..++++|+|+|.+ +....+..|--.||++|..-.
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 699999998 3 6899999999999999999999999998854 466788899999999987644
No 142
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=86.30 E-value=0.96 Score=49.66 Aligned_cols=186 Identities=10% Similarity=-0.030 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCcccCCCCccccccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCC
Q 005624 57 ILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKA 136 (687)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~ 136 (687)
+.+.+..+++-.++++.+++... -+.....+. ....+++....-.-++|.=+=+.|-+-.||+.|++.+...+...
T Consensus 314 wk~d~pevil~gal~lhy~mikq--mkgvpgvk~--Er~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflvt 389 (601)
T KOG1160|consen 314 WKMDAPEVILKGALYLHYNMIKQ--MKGVPGVKA--ERFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLVT 389 (601)
T ss_pred EecCCchhhhHHHHHHHHHHHHH--hhcCCCcCH--HHHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhcc
Confidence 34455677777788888876542 111111000 00011122223344677778889999999999999887654211
Q ss_pred ee----EEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC---CCCCcCCceEEEEeccCC
Q 005624 137 IF----KVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNR 209 (687)
Q Consensus 137 ~v----~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds 209 (687)
+. ++.|+... ..=+-.+++.+=|.--|.+.+.-++||+|+.+... .+.+..-.|+++.|.||+
T Consensus 390 naq~pe~~rnvk~v----------tqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~ 459 (601)
T KOG1160|consen 390 NAQFPEDIRNVKPV----------TQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNS 459 (601)
T ss_pred cccChHHHhchhhh----------heeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccc
Confidence 10 11122111 11233456666667678899999999999976311 223455668999999998
Q ss_pred ch--HHHHHHHHHHHHHHHHcCCcccccccc---ccCCCCcHHhHHHHHHHH
Q 005624 210 QY--EHFNKIAKVVDEILANQGAKRLVPVGL---GDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 210 ~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~---gD~~~~~e~~f~~W~~~l 256 (687)
.= ..||.+++-+-++++-+||+...+.-. -+.+....++|-++...|
T Consensus 460 dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL 511 (601)
T KOG1160|consen 460 DDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFEL 511 (601)
T ss_pred cccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHH
Confidence 84 789999999999999999987654322 112233455555555544
No 143
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.07 E-value=41 Score=31.57 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=79.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
++-.|+-++--|..-.+...+...+-+.. .++++++-..-+. +++.+...+++.=+++.|.. .+..-..+..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~---G~eVi~LG~~vp~-e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA---GFEVINLGVMTSQ-EEFIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC---CCEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 45567888888988888887777665432 2678888654332 34444555555545555554 4455566777777
Q ss_pred HHHhhcCCCCCcCCceEEEEec---cCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGL---GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGl---Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (687)
.|++. .+.+.++.|=|- ++..+ ....+.|+++|...+|+-+.. .+++..|..+.|
T Consensus 77 ~L~~~-----~~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~~------~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEA-----GLGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGTD------PEEAIDDLKKDL 134 (137)
T ss_pred HHHhc-----CCCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCCC------HHHHHHHHHHHh
Confidence 77653 244555544442 12222 455567888999888876532 466777766554
No 144
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=66.24 E-value=1.2e+02 Score=28.57 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=80.4
Q ss_pred EEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
+|+-||--|..-...+.+-..+-+. ..++|+|+--.-+ .+++.+...+++.-++++|+. .|.--..+..+.+.|+
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~---~GfeVi~LG~~v~-~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTN---AGFNVVNLGVLSP-QEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKCD 77 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHH---CCCEEEECCCCCC-HHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHHH
Confidence 4666888888888887665555433 2268888865433 345556667777777777777 6766667888888887
Q ss_pred hhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHH
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 255 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~ 255 (687)
+. .+.+.. -++| |.-.. +.+ ..+.++|+++|..++|+-|.. .+++-.|..+
T Consensus 78 ~~-----gl~~~~-vivG-G~~vi~~~d~----~~~~~~l~~~Gv~~vF~pgt~------~~~iv~~l~~ 130 (134)
T TIGR01501 78 EA-----GLEGIL-LYVG-GNLVVGKQDF----PDVEKRFKEMGFDRVFAPGTP------PEVVIADLKK 130 (134)
T ss_pred HC-----CCCCCE-EEec-CCcCcChhhh----HHHHHHHHHcCCCEEECcCCC------HHHHHHHHHH
Confidence 64 245543 3455 54332 111 234567889999999876642 4666677554
No 145
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=59.15 E-value=1.1e+02 Score=28.39 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=72.3
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHh
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~ 188 (687)
|+-|+--|..-.+.+.|-..+-+. ..++|+|+--.-+ .+++.+...+++.-+++.|+. .|.--..++...+.|++
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~---~GfeVidLG~~v~-~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~~ 76 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTE---AGFNVVNLGVLSP-QEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCDE 76 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHH---CCCEEEECCCCCC-HHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHHH
Confidence 667888888888887776665443 2368888865433 345556666667767777777 66666788888888876
Q ss_pred hcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccc
Q 005624 189 QKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVG 237 (687)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g 237 (687)
. .+... -|+.=|.-.- +.+ ....+.|+++|..++|+.|
T Consensus 77 ~-----gl~~v--~vivGG~~~i~~~d~----~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 77 A-----GLKDI--LLYVGGNLVVGKQDF----EDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred C-----CCCCC--eEEEECCCCCChhhh----HHHHHHHHHcCCCEEECcC
Confidence 3 24443 3444354221 111 2234678899999999865
No 146
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.13 E-value=89 Score=29.14 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=71.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
++.|+-|+..|..-+..+.|...+-+.+ .++|+|+.-+... +++.+...+++.=+++.|+. +|.-.+.+....+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~---GfeVi~lg~~~s~-e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADL---GFDVDVGPLFQTP-EEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKE 76 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhC---CcEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHH
Confidence 3567778888888888777776665442 2688888765432 34555555556545555555 56677788888888
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~ 238 (687)
|++.. +.. +-|+.=|...-+ -.+.|+++|..+++..|.
T Consensus 77 L~~~g-----~~~--i~vivGG~~~~~--------~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 77 LDKLG-----RPD--ILVVVGGVIPPQ--------DFDELKEMGVAEIFGPGT 114 (132)
T ss_pred HHhcC-----CCC--CEEEEeCCCChH--------hHHHHHHCCCCEEECCCC
Confidence 87631 222 334444543311 123488899999988763
No 147
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=54.15 E-value=41 Score=28.58 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhc
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (687)
++++++.++-.|++..++.+|.+.+.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~ 29 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENG 29 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 46899999999999999999999997654
No 148
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.03 E-value=46 Score=28.03 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCC
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~ 145 (687)
+++|+.++-.||+.-++.+|.+.+.+.+....+...++++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~ 40 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS 40 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence 4789999999999999999999997655333334445544
No 149
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=44.63 E-value=40 Score=29.44 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=26.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcC
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYD 134 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (687)
+|+++-||-.||+.-+|.++.+.+.+++.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 79999999999999999999999998774
No 150
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=41.48 E-value=72 Score=30.76 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=36.1
Q ss_pred hccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCch
Q 005624 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY 211 (687)
Q Consensus 156 ~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y 211 (687)
++...+.++|++|-| ++.-|.--+.-++||...=..+ .+--+.|+=+|=|+.+|
T Consensus 83 ki~~aD~ivFvtPqY-N~gypA~LKNAlD~lyheW~gK-PalivSyGGhGGg~c~~ 136 (199)
T KOG4530|consen 83 KILEADSIVFVTPQY-NFGYPAPLKNALDWLYHEWAGK-PALIVSYGGHGGGRCQY 136 (199)
T ss_pred HHhhcceEEEecccc-cCCCchHHHHHHHHhhhhhcCC-ceEEEEecCCCCchHHH
Confidence 455678999999999 7777777777888887531111 22334566667666666
No 151
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.37 E-value=2.2e+02 Score=31.93 Aligned_cols=104 Identities=23% Similarity=0.264 Sum_probs=64.1
Q ss_pred EEEecC-----cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 109 IFFGTQ-----TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 109 I~YgSq-----tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
.||++. ..++++||+.|+++|++.+ .| .++++||. |-.+....-..
T Consensus 307 ~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dg------------VD---------------AvILtstC--gtCtrcga~m~ 357 (431)
T TIGR01917 307 YFYSTTGNGTAVANSKQFAKEFSKELLAAG------------VD---------------AVILTSTU--GTCTRCGATMV 357 (431)
T ss_pred eeEEccCCCccHHHHHHHHHHHHHHHHHcC------------CC---------------EEEEcCCC--CcchhHHHHHH
Confidence 455553 3357788888888887643 11 57889998 56777888888
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc-----cccccCCCCcHHhHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~-----~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
+.+++ .|.....+.. ..- .-+..|+.|++| .-+||-....++...-=+..+-.
T Consensus 358 keiE~--------~GIPvV~i~~-----------~~p---I~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~ 415 (431)
T TIGR01917 358 KEIER--------AGIPVVHICT-----------VTP---IALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEK 415 (431)
T ss_pred HHHHH--------cCCCEEEEee-----------chh---HHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHH
Confidence 88875 3666666651 122 233579999987 34566555555544333334455
Q ss_pred HHHhh
Q 005624 259 ELDNL 263 (687)
Q Consensus 259 ~L~~~ 263 (687)
+|..+
T Consensus 416 AL~aL 420 (431)
T TIGR01917 416 ALKAL 420 (431)
T ss_pred HHHHh
Confidence 56544
No 152
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=41.33 E-value=66 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=38.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhh-cCCCeeEEecCCCCCC-cchhH-HHhccCCCeEEEEee
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD-EEDEY-EEKLKKENIVFFFLA 168 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~-~~~~~-~~~l~~~~~vi~~~s 168 (687)
++|.|.|.-.+-.=.+....|++.|.+. |..+.++..+..+... +-..+ ...+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 4799999997777778899999999887 5322222222222111 11111 344666777776666
No 153
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=40.56 E-value=3.7e+02 Score=30.32 Aligned_cols=130 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred eEEEEEecCc-------chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhH---HHhcc--CCCeEEEEeeCCCCC
Q 005624 106 KVTIFFGTQT-------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY---EEKLK--KENIVFFFLATYGDG 173 (687)
Q Consensus 106 ~v~I~YgSqt-------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~---~~~l~--~~~~vi~~~sTyG~G 173 (687)
+|.++-+|+. ..+++.++++.+.|++.+ +++++......+.++. .+.++ +-+.+|+.++|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP----VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC----ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4666777766 246666677777665442 4565555443121111 12233 357888889999754
Q ss_pred CCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCC--------chHHHHHHHHHHHHHHHHcCCccccccccccCCCCc
Q 005624 174 EPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR--------QYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI 245 (687)
Q Consensus 174 ~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds--------~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~ 245 (687)
.-....++. + ++.+.+++..+. .+..+|.. ..+-..|.++|-+...-.|.-+ +...
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v~g~~~-d~~~ 141 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVVYGHWK-DEDV 141 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEEECCCC-CHHH
Confidence 112222332 2 477888888764 24455543 6677788888877544333322 2345
Q ss_pred HHhHHHHHHH
Q 005624 246 EDDFSAWREL 255 (687)
Q Consensus 246 e~~f~~W~~~ 255 (687)
.+.+..|.+-
T Consensus 142 ~~~i~~~~ra 151 (452)
T cd00578 142 LRKIESWARA 151 (452)
T ss_pred HHHHHHHHHH
Confidence 6678888764
No 154
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=38.84 E-value=10 Score=33.72 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCChHHHHHHHcCCC-----cccccccCCCCCCCCCeEEEEEE
Q 005624 448 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCA 485 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l-----~pR~YSIsSsp~~~~~~i~itv~ 485 (687)
+.-+||++-+.+|.+ +.++|||+|+|. .+.+.+.++
T Consensus 29 ~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik 69 (105)
T PF08022_consen 29 KWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIK 69 (105)
T ss_dssp -------------------------------------------
T ss_pred CCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEE
Confidence 445788876655654 567999999987 567777664
No 155
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.41 E-value=3e+02 Score=24.50 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=61.4
Q ss_pred EEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 109 IFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
|+.++--|..-.+...+...+-+ .| ++++++...-+ ..++.+.+...+.-+++.|++ .+.....+.++.+.++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G----~~V~~lg~~~~-~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~ 75 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAG----FEVIDLGVDVP-PEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELK 75 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHH
Confidence 56677777777777666555544 43 56777764433 334444444444434444444 4556677888888887
Q ss_pred hhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccc
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g 237 (687)
+.. ..+.++.|=|..-.. .. +.++++|+..+++-+
T Consensus 76 ~~~-----~~~~~i~vGG~~~~~------~~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 76 EAG-----LDDIPVLVGGAIVTR------DF----KFLKEIGVDAYFGPA 110 (119)
T ss_pred HcC-----CCCCeEEEECCCCCh------hH----HHHHHcCCeEEECCH
Confidence 531 124555555532221 11 467889998887644
No 156
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=37.40 E-value=81 Score=27.04 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=27.9
Q ss_pred EEEeeeecccCCCCCCceEEEEEeecC--CCCccCCCCeEEEecc
Q 005624 318 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 360 (687)
Q Consensus 318 a~v~~~~~L~~~~~~r~~~hle~di~~--~~~~Y~~GD~l~V~p~ 360 (687)
|+|+..++++. ++++++|.+.+ ..+.|+||.++.|.-.
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 56778888863 58888888874 3478999999999866
No 157
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=37.36 E-value=24 Score=34.09 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=32.9
Q ss_pred cCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+...+++|+=.||+..+.++..+..+..+|++.|+...
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~ 39 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLA 39 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEE
Confidence 45689999999999987788889999999999998743
No 158
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.96 E-value=87 Score=26.64 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=30.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCC
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID 144 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~ 144 (687)
++|.++.||--||+.-++.+|.+.+.+.+....+.-.+++
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~ 40 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAID 40 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchh
Confidence 4689999999999999999999999876533333333443
No 159
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.92 E-value=58 Score=28.51 Aligned_cols=32 Identities=6% Similarity=0.068 Sum_probs=25.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCC
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDK 135 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~ 135 (687)
++++|+++-|+--+|+ -+++++.+.+++++..
T Consensus 2 ~~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 2 NETNILLLCAAGMSTS-LLVNKMNKAAEEYGVP 33 (95)
T ss_pred CccEEEEECCCchhHH-HHHHHHHHHHHHCCCc
Confidence 3578999999987766 6899999999887743
No 160
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=35.62 E-value=1.6e+02 Score=35.05 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=27.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhc
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARY 133 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (687)
+.+++.|+.++--||+..++..|.+.+++.+
T Consensus 377 ~~kkilvVC~sG~GsS~m~~~~l~~~l~~~~ 407 (639)
T PRK15083 377 HVRKIIVACDAGMGSSAMGAGVLRKKVQDAG 407 (639)
T ss_pred ccCEEEEECCCCccHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999998765
No 161
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=35.00 E-value=26 Score=31.87 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=26.0
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCc
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 529 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F 529 (687)
+...|.|||.+-... .+++.|-+.++ -..|..|.|..+..+|+. +-|..+.+.|
T Consensus 64 ~p~~R~YTvR~~d~~-~~~l~iDfv~H--------g~~Gpas~WA~~A~pGd~------v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDPE-TGELDIDFVLH--------GDEGPASRWARSARPGDR------VGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--TT-E------EEEEEEE---
T ss_pred CCCCCCcCEeeEcCC-CCEEEEEEEEC--------CCCCchHHHHhhCCCCCE------EEEeCCCCCC
Confidence 345699999886432 24666555332 123899999999999873 5566666655
No 162
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=34.72 E-value=1.4e+02 Score=34.93 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCC
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~ 147 (687)
.++++|++.-||--||+--.+.++.+.|++++....++-.++.+..
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev~ 549 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK 549 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhCc
Confidence 4567899999999999999999999999998855445555665554
No 163
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=34.05 E-value=69 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=23.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhc
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARY 133 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (687)
+++++.++-.|++..++.+|.+.+.+.+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~ 28 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELG 28 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCC
Confidence 3667777878999999999999998765
No 164
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.88 E-value=2.9e+02 Score=30.98 Aligned_cols=77 Identities=25% Similarity=0.218 Sum_probs=46.7
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc-----cc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VG 237 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~-----~g 237 (687)
.++++||. |-.+....-..+.+++ .|.....+.. +-..-+..||.|++| .-
T Consensus 339 AVILTstC--gtC~r~~a~m~keiE~--------~GiPvv~~~~--------------~~pis~tvGanrivp~~~ip~P 394 (431)
T TIGR01918 339 AVILTSTU--GTCTRCGATMVKEIER--------AGIPVVHMCT--------------VIPIALTVGANRIVPTIAIPHP 394 (431)
T ss_pred EEEEcCCC--CcchhHHHHHHHHHHH--------cCCCEEEEee--------------cccHhhhcCccceecccCcCCC
Confidence 58889998 5677788888888875 3566665541 112233579999876 34
Q ss_pred cccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 238 LGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 238 ~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
+||-....++...-=+..+-.+|..+
T Consensus 395 lGnp~l~~~~e~~~Rr~~v~~AL~aL 420 (431)
T TIGR01918 395 LGDPALSKAEEKKLRRKRVEKALKAL 420 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56665555554433333444555544
No 165
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=33.63 E-value=64 Score=33.16 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred ccCCCCC-CceEEEEEeecCCCCccCCCCeEEEeccC
Q 005624 326 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (687)
Q Consensus 326 L~~~~~~-r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (687)
+..+++. ..+++|+|+..+..+.|+||+++.|.+++
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444443 37999999987667899999999998765
No 166
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.45 E-value=61 Score=26.25 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHH-HHHHHhhhhcCC
Q 005624 55 VMILTTSIAVLIG-CVVVFILRRSSS 79 (687)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (687)
+++.+.++.+++| .++|.+|++.--
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaqk~lp 43 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQKTLP 43 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3455666667777 677777766543
No 167
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=33.29 E-value=41 Score=29.17 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005624 59 TTSIAVLIGCVVVFILRR 76 (687)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~ 76 (687)
..+++++++|++|++|||
T Consensus 74 ~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 74 FFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 356778888888999886
No 168
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=32.27 E-value=1.3e+02 Score=26.44 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=43.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTy 170 (687)
+++|+.+-|+-=||+-.++.++.+.|++.+....+....++++.. .....+ ||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~-------~~~~aD--iiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA-------LTDGAD--IIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc-------CCCccc--EEEEehH
Confidence 468999999999999999999999999987655566666666653 223333 5666665
No 169
>PRK05907 hypothetical protein; Provisional
Probab=31.37 E-value=5.2e+02 Score=27.74 Aligned_cols=126 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHH------hccCCCeEEEEeeCCCCCCCC-ch
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEE------KLKKENIVFFFLATYGDGEPT-DN 178 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~------~l~~~~~vi~~~sTyG~G~~p-dn 178 (687)
.++++||+++ +++.++|.+.+-... ...+|.++++.++ ..+ -+.+..++++--+ +.+. .+
T Consensus 19 ~~y~~~g~~~---~~~~~~l~~~~~~~~----~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~----~~~~~~~ 85 (311)
T PRK05907 19 PAVIVIGSSS---EEDKDIFIELLVSGR----KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA----EKMSSST 85 (311)
T ss_pred ceEEEecCCc---HHHHHHHHHHhCCCc----cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc----ccccccc
Confidence 7999999999 777777766553221 1346777766422 211 1334455544322 2333 35
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
.+.+.+++.+. ......-||.. .+++|.+.-|++.+ |+. + +.. ++-..-.+.++..|..+...
T Consensus 86 ~~~L~~Yl~np------~~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v-~~~-~e~~~l~e~~L~~Wi~~~~~ 148 (311)
T PRK05907 86 QEFLIRYARNP------NPHLTLFLFTT---KQECFSSLSKKLSS-----ALC-L-SLF-GEWFADRDKRIAQLLIQRAK 148 (311)
T ss_pred HHHHHHHHhCC------CCCeEEEEEEe---cccHHHHHHHHHhh-----cce-e-ccc-cccCCCCHHHHHHHHHHHHH
Confidence 67788888752 22234444654 26777665555543 221 1 000 01112236889999887665
Q ss_pred HHH
Q 005624 259 ELD 261 (687)
Q Consensus 259 ~L~ 261 (687)
...
T Consensus 149 ~~g 151 (311)
T PRK05907 149 ELG 151 (311)
T ss_pred HcC
Confidence 443
No 170
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=30.86 E-value=3.1e+02 Score=30.69 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-chhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-EDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
...-+.|.|||.++++++.++.+.+ ++ ..+.++++..+.+= .+.+.+.+.+.+.++++=-++-.|..-....+
T Consensus 267 dad~~iV~~Gs~~~~a~ea~~~L~~----~G--~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~e 340 (407)
T PRK09622 267 DAEVAIVALGTTYESAIVAAKEMRK----EG--IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNE 340 (407)
T ss_pred CCCEEEEEEChhHHHHHHHHHHHHh----CC--CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHH
Confidence 3456888899999988888776643 33 23456666554332 22344556667777777555434443344455
Q ss_pred HHHHHHhhcCCCCCcCCceE---EEEeccCCch--HHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKY---GVFGLGNRQY--EHFNKIAKVVDE 223 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~---aVFGlGds~Y--~~f~~~ak~ld~ 223 (687)
+...|..... ..... .++|+|.+.. +..-++.+++.+
T Consensus 341 v~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 341 VTSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 5555542110 01233 5778887665 555555555444
No 171
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=30.47 E-value=2.5e+02 Score=28.09 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=35.0
Q ss_pred hccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 156 ~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.+..++.+||.+++ .+..|++++.+. ....+.+.++.+.| ....+.|++.|-+..
T Consensus 49 ~~~~~d~iiftS~~--------av~~~~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 49 AALGADWVIFTSKN--------AVEFLLSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred hCCCCCEEEEECHH--------HHHHHHHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 45677776665532 477788888721 22356778887777 555666777886643
No 172
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=29.61 E-value=6e+02 Score=25.63 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=85.2
Q ss_pred CceEEEEEecCcc---hHHHHHHHHHHHHHhhcCCCeeEEecCCCCC---------------------Cc-------chh
Q 005624 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYA---------------------DE-------EDE 152 (687)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------------~~-------~~~ 152 (687)
|++|+++=+|-.| -+..+++.+.+..++..+...+...||-.-. ++ -++
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 5677887777663 3566777777788877776666666663211 10 012
Q ss_pred HHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCchHH----HHHHHHH
Q 005624 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQYEH----FNKIAKV 220 (687)
Q Consensus 153 ~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y~~----f~~~ak~ 220 (687)
+.+++...+.+||..|=| +-..|..-+.+++.+.... .+...+.++|..++..=---|.+ ++....-
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 445677889999999999 8899999888888776421 13346888888887431112422 6667777
Q ss_pred HHHHHHHcCCcc
Q 005624 221 VDEILANQGAKR 232 (687)
Q Consensus 221 ld~~L~~lGa~~ 232 (687)
+...|.=+|.+-
T Consensus 160 Lr~ilgF~Gitd 171 (202)
T COG1182 160 LRTILGFLGITD 171 (202)
T ss_pred HHHHhhhcCCCc
Confidence 777777778763
No 173
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=29.44 E-value=1.6e+02 Score=29.54 Aligned_cols=75 Identities=29% Similarity=0.362 Sum_probs=39.3
Q ss_pred eEEEEEecCcc----hHHHHHHHHHHHHHhhcCCCeeEEe-cCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 106 KVTIFFGTQTG----TAEGFAKALADEARARYDKAIFKVV-DIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 106 ~v~I~YgSqtG----tae~~A~~la~~l~~~~~~~~v~v~-dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
+|+|++|+-.| ..+...+.|++.|++.. ...+.+. |.+.+. .+.|+.++++||.... |+--+++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~-~~~v~~~~~~~~~~------~~~L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESE-GFEVTVTEDPDDLT------PENLKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTT-CEEEEECCSGGCTS------HHCHCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCC-CEEEEEEeCcccCC------hhHhcCCCEEEEECCC-CCcCCHHHHH
Confidence 58899988433 22356666766666332 2333332 223232 2468899976666544 2222445567
Q ss_pred HHHHHHHh
Q 005624 181 RFYKWFTE 188 (687)
Q Consensus 181 ~F~~~L~~ 188 (687)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77778774
No 174
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=29.34 E-value=2e+02 Score=30.01 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.9
Q ss_pred CCCeEEEecCCcchhHHHHHH
Q 005624 536 KVPIIMIGPGTGLAPFRGFLQ 556 (687)
Q Consensus 536 ~~PiImIa~GTGIAPfrsflq 556 (687)
...|+-||+|+|++|+.---+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred CCeEEEecCCcCHHHHHHhcc
Confidence 567999999999999765433
No 175
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=29.15 E-value=90 Score=34.39 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=31.4
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCC-CeeEEecC
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDK-AIFKVVDI 143 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~-~~v~v~dl 143 (687)
..+|+|+|+.+|-.|-=...|+.|++.+..++.. ..+.++|+
T Consensus 3 ~~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~ 45 (391)
T PRK13608 3 TQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDL 45 (391)
T ss_pred CCCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeeh
Confidence 3568999999998767788899999999877532 34455554
No 176
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.88 E-value=4e+02 Score=25.39 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=65.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHh-ccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK-LKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~-l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
.+|+|.=--+-|.... |+.++..|.+.| ++|+..--+... +++... +.+.--+|.+|+++|.. -.-+....
T Consensus 13 prvlvak~GlDgHd~g-akvia~~l~d~G----feVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h--~~l~~~lv 84 (143)
T COG2185 13 PRVLVAKLGLDGHDRG-AKVIARALADAG----FEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGH--LTLVPGLV 84 (143)
T ss_pred ceEEEeccCccccccc-hHHHHHHHHhCC----ceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchH--HHHHHHHH
Confidence 3444443336676655 677788887765 466666555443 233333 34555667777777543 35666677
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccc
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g 237 (687)
+.|.+.- .... -|++=|+-.-+. .+.|++.|..+++.-+
T Consensus 85 e~lre~G-----~~~i--~v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 85 EALREAG-----VEDI--LVVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHhC-----Ccce--EEeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 7777532 2222 255557666544 4567889999998765
No 177
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=25.93 E-value=1.1e+02 Score=26.81 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=48.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
+|+++-|+--+|+ -+|+++.+.+++++....+.-.++.+.. +...+++ +|+++|-. +..++.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~D-iil~~Pqv---------~~~~~~ 62 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESELE-------EYIDDAD-VVLLGPQV---------RYMLDE 62 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHHH-------HhcCCCC-EEEEChhH---------HHHHHH
Confidence 4788888888777 6899999999987744333333333221 2345566 45555544 234445
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFN 215 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~ 215 (687)
+++.. ...+.++.+.. ...|...+
T Consensus 63 i~~~~----~~~~~pv~~I~--~~~Y~~~d 86 (96)
T cd05564 63 VKKKA----AEYGIPVAVID--MMDYGMMN 86 (96)
T ss_pred HHHHh----ccCCCcEEEcC--hHhcccCC
Confidence 54321 12356666664 33454333
No 178
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.87 E-value=1e+02 Score=27.50 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.0
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDK 135 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~ 135 (687)
|++|+++-|+-.+|+ -+|+++.+.+++++..
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~gi~ 31 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQGKD 31 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHCCCc
Confidence 467888888888666 9999999888887743
No 179
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=25.14 E-value=1.9e+02 Score=33.18 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcCCCeeEE--ecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcC
Q 005624 120 GFAKALADEARARYDKAIFKV--VDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQ 197 (687)
Q Consensus 120 ~~A~~la~~l~~~~~~~~v~v--~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~ 197 (687)
+-|..+++.|++.|-. .+.+ +.+..+... +.....+.+++- |+++|-. ..+.|+++|.+...+-..|.
T Consensus 261 ~q~~~l~~~L~~~GA~-v~~~P~i~~~~~~~~-~~~l~~l~~ydw-lvFTS~n-------gV~~Ff~~l~~~~~D~R~l~ 330 (474)
T PRK07168 261 NKTSVMKQKLQEAGAE-IYQIPTFKKEEYTLT-LEQINEIFNVNR-LVFCSAE-------SVEILMQSCSKYKKDIRSLQ 330 (474)
T ss_pred HHHHHHHHHHHHcCCE-EEEeccEEeeCCCCc-HHHHHHhccCCE-EEEcCHH-------HHHHHHHHHHHcCCChHHhC
Confidence 3456667777766521 1111 122222211 233466788885 5555544 37788999987533323465
Q ss_pred CceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcc
Q 005624 198 KLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 232 (687)
Q Consensus 198 ~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~ 232 (687)
.++|+.| .+..+.|++.|-..
T Consensus 331 -~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 331 -AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred -CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 7888888 55666777778543
No 180
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.13 E-value=1.1e+02 Score=33.16 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=27.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcC
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD 134 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (687)
.+++|+|+++|-.|--...|+.|+++|.+++.
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~ 34 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGI 34 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCC
Confidence 46789999999766888899999999988763
No 181
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.89 E-value=44 Score=30.91 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=33.9
Q ss_pred eEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHH
Q 005624 200 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (687)
Q Consensus 200 ~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (687)
+++|+-.||.-+ .-++..+..+.++|++.|.+-....-..|+...+.+.+++|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 578888898765 45677788999999999987544323334322333334333
No 182
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=24.77 E-value=3.3e+02 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=34.1
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+|+++|.. .++.|++++.+.. ...+.+.++.++| .+..+.|++.|.+.++.
T Consensus 176 ~iiftS~~-------~v~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 176 AVLFTSPS-------TVRNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred EEEEeCHH-------HHHHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 45555543 5788888887532 2357778888876 66677777888876553
No 183
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=24.10 E-value=1.5e+02 Score=29.88 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=30.1
Q ss_pred eEEEeeeecccCCCCCCceEEEEEeecC-CCCccCCCCeEEEeccC
Q 005624 317 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 361 (687)
Q Consensus 317 ~a~v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N 361 (687)
.++|+..+.++. +++++.|..+. ..+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 467777777753 47888888754 35789999999998654
No 184
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.10 E-value=1.2e+02 Score=29.53 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=26.5
Q ss_pred CCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 193 ~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
...+.+++++|+|+| ..++.+.++|+.+|++-+
T Consensus 31 ~~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 31 GRELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVI 63 (178)
T ss_dssp BS-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEE
T ss_pred ccccCCCEEEEEEEc--------CCcCeEeeeeecCCceeE
Confidence 446999999999977 578999999999999744
No 185
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.59 E-value=3e+02 Score=25.27 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=41.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L 186 (687)
+.+-+|+..|+|+.+|.++.+...- .+...+..+|---. ...+.+.+++|+++ . .|+-.+.+.+..+++
T Consensus 17 ~~~G~G~s~~~a~e~~~kl~e~~~i-----~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~--~g~t~~~~~~~~~~~ 85 (153)
T cd05009 17 YVLGRGPNYGTALEGALKLKETSYI-----HAEAYSAGEFKHGP---IALVDEGTPVIFLA-P--EDRLEEKLESLIKEV 85 (153)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHhh-----cceeccHHHhccCh---hhhccCCCcEEEEe-c--CChhHHHHHHHHHHH
Confidence 4455888999999999988876531 23344444443111 23355566655555 3 344445577777777
Q ss_pred Hh
Q 005624 187 TE 188 (687)
Q Consensus 187 ~~ 188 (687)
++
T Consensus 86 ~~ 87 (153)
T cd05009 86 KA 87 (153)
T ss_pred HH
Confidence 75
No 186
>PHA03164 hypothetical protein; Provisional
Probab=22.51 E-value=2.4e+02 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=17.2
Q ss_pred hhhhhhccCch----hhHHHHHHHHHHHH
Q 005624 43 EVASIVLDNKE----FVMILTTSIAVLIG 67 (687)
Q Consensus 43 ~~~~~~~~~~~----~~~~~~~~~~~~~~ 67 (687)
.-||.+|.|++ ++++.++++++++.
T Consensus 45 rtawnlwnnrRktftFlvLtgLaIamILf 73 (88)
T PHA03164 45 RTAWNLWNNRRKTFTFLVLTGLAIAMILF 73 (88)
T ss_pred chhHHHHHhhhheeehHHHHHHHHHHHHH
Confidence 34899999854 55666777776655
No 187
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=22.39 E-value=1.2e+02 Score=30.31 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 193 ~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
...+++++++|.|+|+ +++.+-+.|.+.|++-+
T Consensus 23 ~~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 23 TDSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 3468999999999883 67888889999999744
No 188
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.29 E-value=5.8e+02 Score=22.98 Aligned_cols=110 Identities=15% Similarity=0.002 Sum_probs=63.7
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCC-eEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKEN-IVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~-~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
|+.++--|.--.+...+...+-+.. .++++++-...+.+ ++.+...+.+ -+|.+|++. +.....+..+.+.|+
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~---G~~vi~lG~~vp~e-~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA---GFEVIYTGLRQTPE-EIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC---CCEEEECCCCCCHH-HHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHH
Confidence 4556666777777777766665442 25778776654432 3333333333 355555554 566677788888887
Q ss_pred hhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
+. .+.+.++.+= |. .+ +...+.|.++|...++..|..
T Consensus 76 ~~-----~~~~i~i~~G--G~-~~-------~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 76 EL-----GAGDILVVGG--GI-IP-------PEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred hc-----CCCCCEEEEE--CC-CC-------HHHHHHHHHCCCCEEECCCCC
Confidence 63 1334443333 32 12 333467888998888876643
No 189
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=21.93 E-value=3.4e+02 Score=28.14 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhH--HHhc-cCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCC
Q 005624 119 EGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKL-KKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEW 195 (687)
Q Consensus 119 e~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~--~~~l-~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~ 195 (687)
.++|++|++.+.+.+... ... .+...|-.-+ +.-+ ++.++=|+-+|.- .+.+|....+|=+.|.+
T Consensus 80 ~eLa~~i~~~l~~~gi~~--~~~--~~~~lDHG~~vPL~~~~p~~~iPvV~isi~-~~~~~~~~~~lG~aL~~------- 147 (253)
T cd07363 80 PELAERVAELLKAAGIPA--RLD--PERGLDHGAWVPLKLMYPDADIPVVQLSLP-ASLDPAEHYALGRALAP------- 147 (253)
T ss_pred HHHHHHHHHHHHhcCCCc--ccc--CCcCCcccHHHHHHHHcCCCCCcEEEEEec-CCCCHHHHHHHHHHHHh-------
Confidence 458999999998766322 221 1121110000 1112 2234333334332 22345555555555653
Q ss_pred cCCceEEEEeccCCch
Q 005624 196 LQKLKYGVFGLGNRQY 211 (687)
Q Consensus 196 l~~~~~aVFGlGds~Y 211 (687)
+...+++|+|.|+.+.
T Consensus 148 l~~~~v~ii~SG~lsH 163 (253)
T cd07363 148 LRDEGVLIIGSGSSVH 163 (253)
T ss_pred hhhCCEEEEecCccee
Confidence 3345899999999885
No 190
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=21.89 E-value=4.5e+02 Score=27.46 Aligned_cols=104 Identities=8% Similarity=-0.008 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhH--HHhc-cCCCeEEEEee-CCCCCCCCchHHHHHHHHHhhcCCC
Q 005624 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKL-KKENIVFFFLA-TYGDGEPTDNAARFYKWFTEQKEGG 193 (687)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~--~~~l-~~~~~vi~~~s-TyG~G~~pdna~~F~~~L~~~~~~~ 193 (687)
..++|++|++.+.+.+. .+..++-.+...|---+ +.-+ ++.++-++.++ ..+ .-.+....+|=+.|.+.- +
T Consensus 86 ~~eLA~~i~~~~~~~gi--~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l-~- 160 (268)
T cd07371 86 DVELAEACVEEGRKAGL--VTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKAT-R- 160 (268)
T ss_pred CHHHHHHHHHHHHHCCC--cEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHH-H-
Confidence 46789999999987763 23332222332211000 1112 22343233333 332 233444444444453210 0
Q ss_pred CCcCCceEEEEeccCCchH------------HHHHHHHHHHHHHHHc
Q 005624 194 EWLQKLKYGVFGLGNRQYE------------HFNKIAKVVDEILANQ 228 (687)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~------------~f~~~ak~ld~~L~~l 228 (687)
-.+.+++|+|.|+.+.. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12488999999988752 2335667777777554
No 191
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=21.20 E-value=2.7e+02 Score=28.64 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=37.4
Q ss_pred ccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 157 LKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 157 l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
....+.++|-+|. .++.|+..+..... ..+..++++.+| ....+.++++|.+...
T Consensus 173 ~~~~d~v~ftS~~--------~v~~~~~~~~~~~~--~~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 173 LGEVDAVVFTSSS--------AVRALLALAPESGI--EFLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred hCCCCEEEEeCHH--------HHHHHHHHccccch--hHhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 4455665555554 48889888875321 156778888887 6677788889987643
No 192
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=20.86 E-value=5.2e+02 Score=26.53 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=33.3
Q ss_pred HhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 155 ~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
..+..++.+||.+++ -.+.|.++|.... ....+.+++..| ++..+.|++.|-+..+
T Consensus 51 ~~l~~~d~iifTS~n--------aV~~~~~~l~~~~---~~~~~~~~~aVG-------------~~Ta~al~~~G~~~~~ 106 (255)
T PRK05752 51 LELDRYCAVIVVSKP--------AARLGLELLDRYW---PQPPQQPWFSVG-------------AATAAILQDYGLDVSY 106 (255)
T ss_pred hcCCCCCEEEEECHH--------HHHHHHHHHHhhC---CCCcCCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 456778865555532 2566777776432 123457777776 5555666677865444
No 193
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=20.73 E-value=2.8e+02 Score=25.63 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=39.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTy 170 (687)
..+|+|-|.+. -+++.+++.+++.+.+.| ++|+|+.........|.-.-.+.+.-|++++++
T Consensus 40 ~~~VvVg~D~R-~~s~~~~~~~~~~l~~~G----~~V~~~g~~~tP~~~~~~~~~~~~ggi~iTaSh 101 (137)
T PF02878_consen 40 GSRVVVGRDTR-PSSPMLAKALAAGLRANG----VDVIDIGLVPTPALSFAIRQLNADGGIMITASH 101 (137)
T ss_dssp SSEEEEEE-SS-TTHHHHHHHHHHHHHHTT----EEEEEEEEB-HHHHHHHHHHHTESEEEEE--TT
T ss_pred CCeEEEEEccc-CCHHHHHHHHHHHHhhcc----cccccccccCcHHhhhhccccccceeeEEEecC
Confidence 46799999994 567889999999999876 577777643332222322223457778888876
No 194
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=20.26 E-value=3.7e+02 Score=28.16 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhH--HHhc-c-CCCe-EEEEeeCCCCCCCCchHHHHHHHHHhhcCC
Q 005624 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKL-K-KENI-VFFFLATYGDGEPTDNAARFYKWFTEQKEG 192 (687)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~--~~~l-~-~~~~-vi~~~sTyG~G~~pdna~~F~~~L~~~~~~ 192 (687)
..++|+.|++.+.+.+ ..+..+|-+....|-.-. +.-+ . ..++ +|. +|... .-++...-+|=+.|.+.-.
T Consensus 89 ~~eLA~~i~~~~~~~g--i~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~-~s~~~-~~~~~~~~~lG~al~~~l~- 163 (271)
T cd07373 89 DTALAEACVTACPEHG--VHARGVDYDGFPIDTGTITACTLMGIGTEALPLVV-ASNNL-YHSGEITEKLGAIAADAAK- 163 (271)
T ss_pred CHHHHHHHHHHHHHCC--CcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEE-EEeCC-CCCHHHHHHHHHHHHHHHH-
Confidence 5778999999998765 223323332211110000 1112 1 1222 333 33321 2344444455555553110
Q ss_pred CCCcCCceEEEEeccCCch
Q 005624 193 GEWLQKLKYGVFGLGNRQY 211 (687)
Q Consensus 193 ~~~l~~~~~aVFGlGds~Y 211 (687)
-.+.+++|+|.||.+.
T Consensus 164 ---~~~~rV~iIgSG~lSH 179 (271)
T cd07373 164 ---DQNKRVAVVGVGGLSG 179 (271)
T ss_pred ---HcCCeEEEEEeccccc
Confidence 1248999999999886
Done!