Query 005624
Match_columns 687
No_of_seqs 421 out of 3034
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 02:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 3E-108 1E-112 946.1 58.8 564 101-687 15-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 2E-103 6E-108 916.5 54.3 561 99-687 44-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 1.4E-98 5E-103 875.2 53.0 562 101-687 8-654 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 6.8E-80 2.3E-84 684.1 45.7 401 279-687 21-457 (458)
5 2qtl_A MSR;, methionine syntha 100.0 1.6E-74 5.5E-79 654.0 38.6 380 305-687 104-538 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 1.5E-73 5.3E-78 624.4 35.9 357 314-687 5-391 (393)
7 1ddg_A Sulfite reductase (NADP 100.0 1.4E-70 4.9E-75 597.8 38.2 347 308-687 4-374 (374)
8 1f20_A Nitric-oxide synthase; 100.0 1E-70 3.5E-75 610.3 37.2 371 309-687 24-433 (435)
9 1fnb_A Ferredoxin-NADP+ reduct 100.0 3.9E-37 1.3E-41 327.4 27.6 273 309-687 31-314 (314)
10 2bmw_A Ferredoxin--NADP reduct 100.0 7.7E-37 2.6E-41 323.4 29.3 274 309-687 15-304 (304)
11 3vo2_A Putative uncharacterize 100.0 8.8E-37 3E-41 324.2 27.6 273 309-687 27-310 (310)
12 2b5o_A FNR, ferredoxin--NADP r 100.0 5.7E-36 1.9E-40 329.0 28.0 274 309-687 116-402 (402)
13 2rc5_A Ferredoxin-NADP reducta 100.0 4.8E-34 1.6E-38 303.5 25.1 277 310-687 16-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 1.1E-33 3.7E-38 300.3 27.2 274 310-687 23-311 (311)
15 3hr4_A Nitric oxide synthase, 100.0 1.4E-33 4.6E-38 282.8 15.8 153 102-266 38-190 (219)
16 3jqq_A Ferredoxin NADP reducta 100.0 1.4E-32 4.6E-37 292.8 24.3 291 309-687 9-316 (316)
17 1bvy_F Protein (cytochrome P45 99.9 1.5E-27 5.2E-32 235.4 14.7 148 102-261 19-167 (191)
18 1ykg_A SIR-FP, sulfite reducta 99.9 7.3E-26 2.5E-30 218.7 13.8 151 102-264 7-157 (167)
19 2hna_A Protein MIOC, flavodoxi 99.9 5.9E-26 2E-30 214.4 6.0 144 104-260 1-146 (147)
20 1tvc_A Methane monooxygenase c 99.9 7.2E-24 2.4E-28 217.5 15.5 182 449-656 44-231 (250)
21 1umk_A B5R, NADH-cytochrome B5 99.9 3.5E-23 1.2E-27 215.3 19.7 180 463-657 64-265 (275)
22 2r6h_A NADH:ubiquinone oxidore 99.9 6.3E-24 2.1E-28 222.5 14.0 182 461-657 83-277 (290)
23 1qfj_A Protein (flavin reducta 99.9 1.1E-23 3.8E-28 213.5 13.0 179 449-654 30-213 (232)
24 3f6r_A Flavodoxin; FMN binding 99.9 9.8E-24 3.4E-28 199.1 10.6 142 104-259 1-147 (148)
25 2eix_A NADH-cytochrome B5 redu 99.9 1.8E-23 6.3E-28 213.3 12.6 184 450-657 43-233 (243)
26 1fdr_A Flavodoxin reductase; f 99.9 1.7E-23 5.9E-28 214.2 12.1 185 449-656 31-228 (248)
27 4eh1_A Flavohemoprotein; struc 99.9 5.3E-23 1.8E-27 209.8 14.2 181 449-657 34-223 (243)
28 1krh_A Benzoate 1,2-dioxygenas 99.9 5.3E-23 1.8E-27 220.6 14.7 179 449-656 139-322 (338)
29 1gvh_A Flavohemoprotein; oxido 99.9 1.4E-22 4.8E-27 221.9 15.4 179 449-656 183-377 (396)
30 4fk8_A Ferredoxin--NADP reduct 99.9 1.3E-23 4.3E-28 218.3 4.4 203 449-687 47-268 (271)
31 2bgi_A Ferredoxin-NADP(H) redu 99.9 1.1E-22 3.8E-27 211.5 11.2 185 449-656 44-247 (272)
32 4g1v_A Flavohemoglobin; three 99.9 4.2E-22 1.4E-26 218.5 15.6 182 450-657 185-378 (399)
33 1cqx_A Flavohemoprotein; globi 99.9 1.8E-22 6.1E-27 221.6 12.0 187 449-656 185-383 (403)
34 2cnd_A NADH-dependent nitrate 99.9 1.3E-22 4.3E-27 210.4 9.8 192 449-655 43-257 (270)
35 2qdx_A Ferredoxin reductase; o 99.9 1E-22 3.5E-27 209.8 7.8 185 449-656 31-233 (257)
36 1ep3_B Dihydroorotate dehydrog 99.9 2.6E-22 8.8E-27 207.6 10.7 170 450-656 35-211 (262)
37 1f4p_A Flavodoxin; electron tr 99.9 1.6E-21 5.4E-26 183.6 10.9 141 105-258 1-145 (147)
38 2wc1_A Flavodoxin; electron tr 99.8 9.3E-22 3.2E-26 192.4 7.2 146 104-263 1-179 (182)
39 1yob_A Flavodoxin 2, flavodoxi 99.8 2.7E-21 9.1E-26 188.7 8.4 143 105-261 1-176 (179)
40 2fcr_A Flavodoxin; electron tr 99.8 1.4E-20 4.7E-25 182.6 12.5 140 106-260 1-171 (173)
41 2pia_A Phthalate dioxygenase r 99.8 5.9E-21 2E-25 203.4 10.4 173 449-656 39-214 (321)
42 1ag9_A Flavodoxin; electron tr 99.8 7.8E-21 2.7E-25 184.8 9.7 143 105-262 1-169 (175)
43 2bmv_A Flavodoxin; electron tr 99.8 5.1E-21 1.7E-25 183.9 6.9 137 104-259 1-162 (164)
44 1obo_A Flavodoxin; electron tr 99.8 5.4E-20 1.8E-24 177.3 11.3 142 105-261 2-168 (169)
45 1czn_A Flavodoxin; FMN binding 99.8 7.5E-20 2.6E-24 176.3 10.0 142 105-260 1-167 (169)
46 5nul_A Flavodoxin; electron tr 99.7 1.8E-17 6.3E-22 154.1 13.5 132 107-256 1-135 (138)
47 2xod_A NRDI protein, NRDI; fla 99.7 3E-17 1E-21 149.3 6.2 116 107-257 1-117 (119)
48 3hly_A Flavodoxin-like domain; 99.6 2.6E-16 9E-21 150.8 9.7 142 105-262 1-144 (161)
49 3fni_A Putative diflavin flavo 99.6 4.5E-16 1.5E-20 148.9 9.5 143 104-262 4-149 (159)
50 2gpj_A Siderophore-interacting 99.6 2.2E-16 7.5E-21 162.3 6.7 166 450-655 40-211 (252)
51 1rlj_A NRDI protein; flavoprot 99.6 2.9E-16 9.8E-21 146.7 5.8 120 105-258 9-129 (139)
52 2fz5_A Flavodoxin; alpha/beta 99.6 3.9E-15 1.3E-19 137.5 12.8 133 107-257 2-135 (137)
53 3a1f_A Cytochrome B-245 heavy 99.6 9.3E-16 3.2E-20 149.0 7.4 131 525-657 6-169 (186)
54 3lrx_A Putative hydrogenase; a 99.5 7.2E-15 2.5E-19 140.3 7.4 119 521-657 9-135 (158)
55 3lyu_A Putative hydrogenase; t 99.5 1.2E-14 3.9E-19 136.4 8.4 118 522-657 5-130 (142)
56 3n3a_C Protein NRDI; ribonucle 99.4 1E-12 3.5E-17 122.9 9.5 98 104-226 20-122 (153)
57 1e5d_A Rubredoxin\:oxygen oxid 99.3 7.9E-12 2.7E-16 136.2 13.5 146 104-263 252-399 (402)
58 2ark_A Flavodoxin; FMN, struct 99.3 1.6E-11 5.5E-16 120.1 14.1 149 104-264 4-169 (188)
59 2a5l_A Trp repressor binding p 99.3 1.4E-11 4.7E-16 121.2 13.6 129 103-235 4-145 (200)
60 1ycg_A Nitric oxide reductase; 99.3 4.7E-12 1.6E-16 137.8 11.0 119 104-236 251-369 (398)
61 4dik_A Flavoprotein; TM0755, e 99.3 6.4E-12 2.2E-16 137.8 11.3 122 102-235 263-385 (410)
62 2q9u_A A-type flavoprotein; fl 99.2 6.2E-11 2.1E-15 129.9 14.7 146 103-262 255-405 (414)
63 3b6i_A Flavoprotein WRBA; flav 99.2 1.1E-10 3.9E-15 114.4 13.3 125 104-234 1-140 (198)
64 3klb_A Putative flavoprotein; 99.2 5.8E-11 2E-15 113.6 10.8 133 104-256 4-160 (162)
65 2ohh_A Type A flavoprotein FPR 99.2 4.4E-11 1.5E-15 130.4 11.0 147 102-259 254-401 (404)
66 4ici_A Putative flavoprotein; 99.1 1.6E-10 5.6E-15 111.5 11.6 135 101-256 10-168 (171)
67 2zki_A 199AA long hypothetical 99.1 2.2E-10 7.6E-15 112.5 12.9 126 103-234 3-143 (199)
68 3d7n_A Flavodoxin, WRBA-like p 99.1 1.7E-10 5.9E-15 113.3 12.0 121 103-233 5-126 (193)
69 1ydg_A Trp repressor binding p 99.1 1.4E-10 4.6E-15 115.4 10.1 128 103-235 5-152 (211)
70 2vzf_A NADH-dependent FMN redu 99.0 3.7E-10 1.3E-14 111.3 8.6 122 104-234 2-137 (197)
71 1t5b_A Acyl carrier protein ph 99.0 4.8E-09 1.6E-13 102.8 13.9 158 104-263 1-198 (201)
72 3edo_A Flavoprotein, putative 99.0 1.5E-09 5.3E-14 102.3 9.0 127 104-253 3-150 (151)
73 1sqs_A Conserved hypothetical 98.7 5.9E-08 2E-12 98.5 13.0 152 104-261 1-178 (242)
74 1rtt_A Conserved hypothetical 98.7 4.8E-08 1.6E-12 95.6 11.4 125 103-234 5-143 (193)
75 1t0i_A YLR011WP; FMN binding p 98.7 8.6E-08 3E-12 93.4 12.5 121 105-235 1-150 (191)
76 3gfs_A FMN-dependent NADPH-azo 98.7 5.2E-08 1.8E-12 93.7 9.7 115 105-234 1-131 (174)
77 2hpv_A FMN-dependent NADH-azor 98.6 3.5E-07 1.2E-11 90.3 12.6 157 104-262 1-203 (208)
78 2q62_A ARSH; alpha/beta, flavo 98.5 1.3E-06 4.5E-11 89.0 14.6 128 101-233 31-169 (247)
79 1rli_A Trp repressor binding p 98.5 1.1E-06 3.8E-11 84.6 12.4 125 103-235 2-153 (184)
80 2fzv_A Putative arsenical resi 98.4 2.9E-06 1E-10 87.7 13.2 127 102-233 56-194 (279)
81 3fvw_A Putative NAD(P)H-depend 98.3 4.9E-06 1.7E-10 81.4 14.1 126 104-235 2-145 (192)
82 3rpe_A MDAB, modulator of drug 98.3 1.6E-05 5.5E-10 79.3 17.1 157 102-264 23-216 (218)
83 3r6w_A FMN-dependent NADH-azor 98.3 7.4E-06 2.5E-10 81.2 14.6 158 104-263 1-208 (212)
84 3k1y_A Oxidoreductase; structu 98.3 4.5E-06 1.5E-10 81.8 11.3 125 102-233 9-152 (191)
85 4hs4_A Chromate reductase; tri 98.2 1.7E-05 5.9E-10 78.0 13.6 124 104-234 6-144 (199)
86 3lcm_A SMU.1420, putative oxid 98.1 9.4E-06 3.2E-10 79.6 11.1 156 105-264 1-189 (196)
87 3f2v_A General stress protein 98.1 2.1E-05 7.2E-10 77.0 12.4 158 104-264 1-182 (192)
88 1d4a_A DT-diaphorase, quinone 98.1 3.1E-05 1.1E-09 80.0 14.0 158 104-264 2-215 (273)
89 2amj_A Modulator of drug activ 98.1 8.9E-05 3E-09 73.1 16.4 149 103-255 11-198 (204)
90 3p0r_A Azoreductase; structura 98.1 3.2E-05 1.1E-09 76.7 13.1 158 104-263 4-207 (211)
91 3s2y_A Chromate reductase; ura 97.3 5.8E-07 2E-11 88.6 0.0 125 103-234 5-144 (199)
92 3tem_A Ribosyldihydronicotinam 98.0 6E-05 2E-09 75.8 12.9 158 105-265 2-215 (228)
93 3u7i_A FMN-dependent NADH-azor 97.8 0.0003 1E-08 70.4 15.3 161 103-264 3-214 (223)
94 3u7r_A NADPH-dependent FMN red 97.8 0.00049 1.7E-08 67.1 15.7 124 104-233 2-138 (190)
95 3svl_A Protein YIEF; E. coli C 97.8 0.00025 8.6E-09 69.3 13.2 155 103-264 3-183 (193)
96 3ha2_A NADPH-quinone reductase 97.8 0.0002 7E-09 69.0 12.2 151 105-263 1-167 (177)
97 3l9w_A Glutathione-regulated p 97.4 0.0012 4.1E-08 72.1 13.6 158 103-264 235-408 (413)
98 4gi5_A Quinone reductase; prot 97.1 0.0037 1.3E-07 64.6 12.8 160 102-264 20-242 (280)
99 1tvm_A PTS system, galactitol- 75.6 6 0.0002 34.5 6.7 46 102-147 19-64 (113)
100 1e2b_A Enzyme IIB-cellobiose; 61.5 14 0.00046 31.9 5.8 58 104-170 3-60 (106)
101 1ccw_A Protein (glutamate muta 59.9 15 0.00051 33.0 6.1 111 108-237 5-120 (137)
102 2l2q_A PTS system, cellobiose- 59.2 10 0.00034 32.7 4.6 56 104-168 4-59 (109)
103 2l2t_A Receptor tyrosine-prote 46.6 26 0.00087 25.3 4.1 15 65-79 25-39 (44)
104 3czc_A RMPB; alpha/beta sandwi 45.2 16 0.00056 31.4 3.6 43 103-145 17-60 (110)
105 2jwa_A Receptor tyrosine-prote 44.8 24 0.00083 25.5 3.8 17 62-78 23-39 (44)
106 2ks1_B Epidermal growth factor 42.6 31 0.0011 24.9 4.1 10 69-78 30-39 (44)
107 1vkr_A Mannitol-specific PTS s 39.1 48 0.0016 29.3 5.8 45 103-147 12-57 (125)
108 3nbm_A PTS system, lactose-spe 36.5 79 0.0027 27.1 6.7 79 103-205 5-85 (108)
109 3rht_A (gatase1)-like protein; 33.1 58 0.002 32.6 6.0 74 104-187 4-77 (259)
110 4e5v_A Putative THUA-like prot 31.2 2.4E+02 0.0083 28.3 10.4 80 104-188 4-85 (281)
111 1mkz_A Molybdenum cofactor bio 27.8 37 0.0013 31.6 3.3 58 195-252 7-64 (172)
112 1t0b_A THUA-like protein; treh 26.9 2.4E+02 0.0082 27.8 9.3 63 122-188 34-96 (252)
113 3ju3_A Probable 2-oxoacid ferr 26.9 55 0.0019 28.4 4.1 57 104-166 14-71 (118)
114 3pzy_A MOG; ssgcid, seattle st 25.8 27 0.00092 32.4 1.9 57 196-253 5-63 (164)
115 3c6c_A 3-keto-5-aminohexanoate 23.3 1.2E+02 0.0042 31.2 6.4 107 117-241 164-271 (316)
116 3no5_A Uncharacterized protein 21.5 1.1E+02 0.0038 30.9 5.6 108 117-241 122-232 (275)
117 3s2u_A UDP-N-acetylglucosamine 21.2 73 0.0025 33.0 4.4 25 537-561 3-29 (365)
118 3chv_A Prokaryotic domain of u 21.0 72 0.0025 32.4 4.1 108 116-241 125-236 (284)
119 2y7e_A 3-keto-5-aminohexanoate 20.7 93 0.0032 31.6 4.8 111 116-241 126-238 (282)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=3.5e-108 Score=946.08 Aligned_cols=564 Identities=41% Similarity=0.753 Sum_probs=487.0
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhcc--CCCeEEEEeeCCCCCCCCch
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK--KENIVFFFLATYGDGEPTDN 178 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~pdn 178 (687)
....++|+|+|||||||||++|++|++++.+.| ..++++|+++++.++. ..+. +++++||++||||+|++|+|
T Consensus 15 ~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~g--~~~~v~~~~~~~~~~l---~~~~~~~~~~vi~~~sT~G~G~~pd~ 89 (618)
T 3qe2_A 15 KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLADL---SSLPEIDNALVVFCMATYGEGDPTDN 89 (618)
T ss_dssp HHHTCSEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGGG---GGGGGSTTCEEEEEEECBGGGBCCGG
T ss_pred HhcCCeEEEEEECChhHHHHHHHHHHHHHHhCC--CceEEechHHcCHHHh---hhcccccCcEEEEEcCccCCCCCCHH
Confidence 334577999999999999999999999998776 4578899999986541 2222 47899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
|+.|++||.+.. ..|++++||||||||++|++||.++|.++++|+++||++++|+|+||++.+++++|+.|++.+|+
T Consensus 90 ~~~F~~~L~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~ 166 (618)
T 3qe2_A 90 AQDFYDWLQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWL 166 (618)
T ss_dssp GHHHHHHHHHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHH
Confidence 999999998632 46999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCccccccceEEEEecCCCc---ccCc--cccCCCCCCccccCCCCeeEEEeeeecccCCCCCC
Q 005624 259 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADA---SVGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDR 333 (687)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r 333 (687)
+|.+.+..+... .....+.|++........ ...+ ......+...+|+.++|+.|+|+.|++|+. +++|
T Consensus 167 ~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~ 239 (618)
T 3qe2_A 167 AVCEHFGVEATG------EESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTER 239 (618)
T ss_dssp HHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSS
T ss_pred HHHHHhCCCccc------ccccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCC
Confidence 999987533211 011235667665422111 0000 001112234567888999999999999995 5789
Q ss_pred ceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCC-cCcHHHHHH
Q 005624 334 SCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALT 412 (687)
Q Consensus 334 ~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~ 412 (687)
+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.+.++..+.. ...+.||| |||++++|+
T Consensus 240 ~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 240 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHH
T ss_pred cEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhh
Confidence 99999999999999999999999999999999999999999999999999865432 12356888 999999999
Q ss_pred HhhhhcCCCCh------------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCC
Q 005624 413 KYADLLSSPKK------------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRL 462 (687)
Q Consensus 413 ~y~Dl~~~p~k------------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l 462 (687)
+|+||+++|+| ++|.+|+...+++++|||.+||++++|+++|++. +|++
T Consensus 314 ~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l 392 (618)
T 3qe2_A 314 YYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRL 392 (618)
T ss_dssp HTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBC
T ss_pred hEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-cccc
Confidence 99999999986 3588899999999999999999999999999975 5999
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCC-CCCCCCCceeeEEEeeCCcccCCCCCCCeEE
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 541 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~-~~~~~~~~~~~v~v~~~~F~lp~~~~~PiIm 541 (687)
+||+|||||+|..++++++|+|+++.++++.++.+.|+||+||+++.+ |+. .....++|+++.|+|++|.++.+|+||
T Consensus 393 ~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~-~~~~~v~v~~p~g~F~lp~~~~~piim 471 (618)
T 3qe2_A 393 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGEN-GGRALVPMFVRKSQFRLPFKATTPVIM 471 (618)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSSTTSCEEE
T ss_pred ccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCC-CcceEEEEEEecCcccCCCCCCCCeEE
Confidence 999999999998878999999999999998999999999999999988 441 111268899999999999888999999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhh
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMM 621 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~ 621 (687)
||+||||||||+|+|+|......+...++++||||||+++.|++|++||+++.+.|.+++++++|||++..|+||||+|.
T Consensus 472 Ig~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~ 551 (618)
T 3qe2_A 472 VGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLK 551 (618)
T ss_dssp ECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHH
T ss_pred EcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHH
Confidence 99999999999999999876555444589999999999966999999999999999988999999999888999999999
Q ss_pred cchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 622 EKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 622 e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++.+.+++++.++++||||||+++|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 552 ~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 552 QDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp HTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 999999998888999999999669999999999999999999999999999999999999999999
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=1.6e-103 Score=916.53 Aligned_cols=561 Identities=34% Similarity=0.613 Sum_probs=479.2
Q ss_pred ccccCCceEEEEEecCcchHHHHHHHHHHHHH-hhcCCCeeEEecCCCCCCcchhHHHhccCC-CeEEEEeeCCCCCCCC
Q 005624 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKE-NIVFFFLATYGDGEPT 176 (687)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~-~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~-~~vi~~~sTyG~G~~p 176 (687)
.....+++++|+|||||||||++|++|++++. +.+ ..+.++++++++.+ ++..+ +.+||++||||+|++|
T Consensus 44 ~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g--~~v~v~~l~~~~~~------~l~~~~~~vi~~~sT~G~G~~p 115 (682)
T 2bpo_A 44 VVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFN--LNVMCADVENYDFE------SLNDVPVIVSIFISTYGEGDFP 115 (682)
T ss_dssp HHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHHC--CCEEEEETTSSCGG------GGGGCCSEEEEEEECBTTTBCC
T ss_pred HHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhcC--CceEEeehHHCCHH------HHhhcCCeEEEEeCccCCCCCC
Confidence 34456789999999999999999999999998 655 45789999999863 46678 9999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC-CcHHhHHHHHHH
Q 005624 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWREL 255 (687)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~-~~e~~f~~W~~~ 255 (687)
+|+..|++||.... ...|++++||||||||++|++||.+++.++++|+++||+++.+++++|++. +.+++|++|.++
T Consensus 116 ~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~ 193 (682)
T 2bpo_A 116 DGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDS 193 (682)
T ss_dssp SSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHH
Confidence 99999999998642 235999999999999999999999999999999999999999999999874 789999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCccccccceEEEEecC--CCcccCccc---cCC--------CCCCccccCCCCeeEEEee
Q 005624 256 VWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAV 322 (687)
Q Consensus 256 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~p~~a~v~~ 322 (687)
||++|.+.+..+... . ...|.+++...+. ......+.. ... .+....|+.++|+.|+|+.
T Consensus 194 l~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~ 266 (682)
T 2bpo_A 194 ILEVLKDELHLDEQE----A---KFTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVK 266 (682)
T ss_dssp HHHHHHHHTTCCCCC----C---CCCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEE
T ss_pred HHHHHHhhcCCcccc----c---ccCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCceEEEEEE
Confidence 999999887532211 0 1123444433221 000000000 000 1123467888999999999
Q ss_pred eecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCC
Q 005624 323 RKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTF 402 (687)
Q Consensus 323 ~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~ 402 (687)
+++|+. +++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.|+++..+. ..+.||
T Consensus 267 ~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~ 337 (682)
T 2bpo_A 267 SRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPF 337 (682)
T ss_dssp EEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSS
T ss_pred EEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCC
Confidence 999998 78999999999999999999999999999999999999999999999999999875432 235689
Q ss_pred C-cCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCCHHHHHHhCC----CCCCCh
Q 005624 403 P-PCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRSLLEVMSEFP----SAKPPL 451 (687)
Q Consensus 403 p-p~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~l~dvl~~fp----s~~~p~ 451 (687)
| |||++++|++|+||+++|+| ++|.+|+...++|++|+|.+|| ++++|+
T Consensus 338 p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~ 417 (682)
T 2bpo_A 338 PTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPM 417 (682)
T ss_dssp CSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHTTCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCH
T ss_pred CCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhccCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCH
Confidence 9 99999999999999999987 4789999999999999999999 889999
Q ss_pred HHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC---CccccCccchhhcccCCC------------CCCC-
Q 005624 452 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPM------------EKSN- 515 (687)
Q Consensus 452 ~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~---g~~~~G~~S~~L~~~~~~------------~~~~- 515 (687)
+++++. +|+++||+|||||+|..++++++|+|+++.+.++. ++.+.|+||+||.++.++ +...
T Consensus 418 ~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i 496 (682)
T 2bpo_A 418 QFLVES-VPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDL 496 (682)
T ss_dssp HHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCS
T ss_pred HHHHHh-CcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceee
Confidence 998864 69999999999999987789999999988887775 678899999999987662 1111
Q ss_pred -------CCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh------cCCCCCcEEEEEeeccCCc
Q 005624 516 -------DCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRKM 582 (687)
Q Consensus 516 -------~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~------~~~~~~~~~LffG~R~~~~ 582 (687)
.+..++++++.++|+||.++.+|+||||+||||||||+|+|++...+. .+...++++||||||++ .
T Consensus 497 ~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~-~ 575 (682)
T 2bpo_A 497 NGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNT-D 575 (682)
T ss_dssp SCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSS-S
T ss_pred ccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCCh-h
Confidence 013788999999999998888999999999999999999999987654 33345899999999999 5
Q ss_pred ccccHHHHHHHH-HcCCCcEEEEEEec-CCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHH
Q 005624 583 DYIYEDELNNFV-QSGALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 660 (687)
Q Consensus 583 D~ly~del~~~~-~~g~~~~l~~afSr-~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 660 (687)
|++|++||++++ +.|.++++++|||| ++..|+||||+|.++.+.+|+++.++++||||||+++|+++|+++|.+|+++
T Consensus 576 D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~~ 655 (682)
T 2bpo_A 576 DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSR 655 (682)
T ss_dssp SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHHH
Confidence 999999999995 55778899999999 5667999999999999999999888999999999789999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 661 QGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 661 ~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+++++.++|++|+++|+++|||++|||
T Consensus 656 ~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 656 GKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1.4e-98 Score=875.15 Aligned_cols=562 Identities=31% Similarity=0.593 Sum_probs=469.0
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
...+++++|+|||||||||.+|++|++.+. .+ ..+++++|++|+.+ +|..++++||++||||+|+||+|++
T Consensus 8 ~~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~--~~~~v~~m~~~d~~------~l~~~~~vl~vtsT~G~Gdpp~n~~ 78 (688)
T 1tll_A 8 MAKRVKATILYATETGKSQAYAKTLCEIFK-HA--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGE 78 (688)
T ss_dssp -CCSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGH
T ss_pred hcCCCeEEEEEECCchHHHHHHHHHHHHHh-cC--CCcEEeecccCChh------HhccCceEEEEEcccCCCcCCHHHH
Confidence 345678999999999999999999999985 33 56789999999864 4678899999999999999999999
Q ss_pred HHHHHHHhhcC----------------------------C-----------CCCcCCceEEEEeccCCchHHHHHHHHHH
Q 005624 181 RFYKWFTEQKE----------------------------G-----------GEWLQKLKYGVFGLGNRQYEHFNKIAKVV 221 (687)
Q Consensus 181 ~F~~~L~~~~~----------------------------~-----------~~~l~~~~~aVFGlGds~Y~~f~~~ak~l 221 (687)
.|++||.+... + ...|+|++||||||||++|+|||.+++.+
T Consensus 79 ~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~l 158 (688)
T 1tll_A 79 KFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAV 158 (688)
T ss_dssp HHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHH
T ss_pred HHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHH
Confidence 99999987520 0 23589999999999999999999999999
Q ss_pred HHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhhCCCCCCCC-C--C---CCc-cccccceEEEEecCCCc
Q 005624 222 DEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTT-V--S---TPY-TAAISEYRVVFYDNADA 294 (687)
Q Consensus 222 d~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~-~--~---~~~-~~~~~~~~~~~~~~~~~ 294 (687)
|++|+++||++++++++||+..+.+++|+.|.+.+|++|++.+........ . . .+. ....+.+++........
T Consensus 159 d~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (688)
T 1tll_A 159 DTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPD 238 (688)
T ss_dssp HHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCC
T ss_pred HHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEeccccccc
Confidence 999999999999999999998788999999999999999987642211100 0 0 000 01123455544221100
Q ss_pred ccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCC-CCccCCCCeEEEeccCCHHHHHHHHHHh
Q 005624 295 SVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLL 373 (687)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l 373 (687)
. ......++.++|+.++|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++|
T Consensus 239 ~--------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l 310 (688)
T 1tll_A 239 L--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERL 310 (688)
T ss_dssp H--------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTC
T ss_pred c--------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHh
Confidence 0 000112456789999999999999999999999999999875 7999999999999999999999999999
Q ss_pred CC--CCCceEEEeeCCCCCCcCC---CCCCCCCCCcCcHHHHHHHhhhhcCCCCh-------------------------
Q 005624 374 GL--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKK------------------------- 423 (687)
Q Consensus 374 ~l--~~d~~~~i~~~~~~~~~l~---~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k------------------------- 423 (687)
|+ ++|+.+.|+..++...+.. ....+.+|||||++++|++|+||+++|+|
T Consensus 311 ~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~ 390 (688)
T 1tll_A 311 EDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKG 390 (688)
T ss_dssp SSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTC
T ss_pred CCCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhcC
Confidence 86 6789998875322111110 01224577899999999999999999986
Q ss_pred -hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CccccCc
Q 005624 424 -DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGL 500 (687)
Q Consensus 424 -~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--g~~~~G~ 500 (687)
++|.+|+...+++++|+|.+||++++|+++++.. +|+++||+|||||+|..+++.++++|+++.+.++. |+.+.|+
T Consensus 391 ~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~ 469 (688)
T 1tll_A 391 LQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGV 469 (688)
T ss_dssp SHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECH
T ss_pred HHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCc
Confidence 4688999999999999999999999999988865 69999999999999987678999999988776654 4678899
Q ss_pred cchhhcccCCCCCCCCCceeeEEEe-eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeec
Q 005624 501 CSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCR 578 (687)
Q Consensus 501 ~S~~L~~~~~~~~~~~~~~~~v~v~-~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~LffG~R 578 (687)
||+||+++.+|+ .++|+++ .+.|++|.++.+|+||||+|||||||++|++++..... .+...++++||||||
T Consensus 470 ~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R 543 (688)
T 1tll_A 470 CSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCR 543 (688)
T ss_dssp HHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEES
T ss_pred hhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEec
Confidence 999999887765 5788886 45899998888999999999999999999999987532 122347999999999
Q ss_pred cCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-ccccchhhhcc-hHHHHhcc-cCCcEEEEECCchhhHHHHHHHHH
Q 005624 579 NRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655 (687)
Q Consensus 579 ~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~-k~yVq~~l~e~-~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~ 655 (687)
+++.|++|++||+++.+.+.+++++++|||++.. ++||||+|.++ .+.+++++ ..+++|||||| ++|+++|.++|.
T Consensus 544 ~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~~L~ 622 (688)
T 1tll_A 544 QSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQ 622 (688)
T ss_dssp CTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHHHHH
Confidence 9976899999999999999888999999998754 89999999998 78888877 67899999999 689999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 656 TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 656 ~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++++++++++.++|++|+++|+.++||++|+|
T Consensus 623 ~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 623 RIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 99999999999999999999999999999998
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=6.8e-80 Score=684.08 Aligned_cols=401 Identities=41% Similarity=0.774 Sum_probs=353.8
Q ss_pred ccccceEEEEecCCCcc---cCccc--cCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCC
Q 005624 279 AAISEYRVVFYDNADAS---VGEKS--WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 353 (687)
Q Consensus 279 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 353 (687)
..+++|+++.++..+.. ..+.. ....++..+|+.+||+.|+|+.|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 46788999988654422 22211 1335577889999999999999999997 578999999999999999999999
Q ss_pred eEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh---------
Q 005624 354 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK--------- 423 (687)
Q Consensus 354 ~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k--------- 423 (687)
||+|||.|+++.|++++++||+++|+.++++..+.+ ...+.||| |+|++++|++|+||+++|+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999864432 12356888 99999999999999999986
Q ss_pred ---------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEE
Q 005624 424 ---------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 482 (687)
Q Consensus 424 ---------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~i 482 (687)
++|.+|+...+++++|||.+||++++|+++|++. +|+++||+|||||+|..++++++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 2478888889999999999999999999999975 599999999999999877899999
Q ss_pred EEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh
Q 005624 483 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 562 (687)
Q Consensus 483 tv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~ 562 (687)
+|++|.+.+..|+.+.|+||+||+++.++++...+..++|+++.|.|++|.++.+|+||||+||||||||+|+|+|..+.
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999998888999999999999999887643222358899999999999888899999999999999999999987654
Q ss_pred hcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECC
Q 005624 563 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 642 (687)
Q Consensus 563 ~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~ 642 (687)
..+...++++||||||++..|++|++||+++.+.|.++++++||||++..|+||||+|.++.+.+|+++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44434579999999999755999999999999999888999999999888999999999999999999988999999999
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 643 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 643 a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 668999999999999999999999999999999999999999999
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=1.6e-74 Score=654.04 Aligned_cols=380 Identities=34% Similarity=0.633 Sum_probs=325.5
Q ss_pred CCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCC--CceEE
Q 005624 305 NGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFS 382 (687)
Q Consensus 305 ~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~--d~~~~ 382 (687)
++..+|+..+|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++ +..|.
T Consensus 104 ~~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~ 183 (539)
T 2qtl_A 104 SQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVL 183 (539)
T ss_dssp ---------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEE
T ss_pred cccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999985 56788
Q ss_pred EeeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhc
Q 005624 383 LHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVAS 433 (687)
Q Consensus 383 i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~ 433 (687)
++..+.... .+..++++|| |||++++|++|+||+++|+| ++|.+|+...
T Consensus 184 ~~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~ 261 (539)
T 2qtl_A 184 LKIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDA 261 (539)
T ss_dssp EEECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTT
T ss_pred EeccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhc
Confidence 876443221 1235678899 99999999999999999986 4688899999
Q ss_pred CCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeC--CCCccccCccchhhccc---
Q 005624 434 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT--PTGRVHKGLCSTWMKNS--- 508 (687)
Q Consensus 434 ~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~--~~g~~~~G~~S~~L~~~--- 508 (687)
+++++|+|.+||++++|+++|++. +|+++||+|||||+|..+++.++|+|+++.+.+ ..++.+.|+||+||+++
T Consensus 262 ~~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~ 340 (539)
T 2qtl_A 262 CACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVAS 340 (539)
T ss_dssp TCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTT
T ss_pred CCCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhh
Confidence 999999999999999999999975 699999999999999766799999999887743 44567889999999998
Q ss_pred --------CCCCC-CCCCceeeEEEee-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC--CCCCcEEEEEe
Q 005624 509 --------LPMEK-SNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFG 576 (687)
Q Consensus 509 --------~~~~~-~~~~~~~~v~v~~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~--~~~~~~~LffG 576 (687)
.+|+. ...+..++|+++. +.|+||.++.+|+||||+||||||||||+|+|....+.+ ...++++||||
T Consensus 341 ~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG 420 (539)
T 2qtl_A 341 VLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFG 420 (539)
T ss_dssp TC--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEE
T ss_pred hccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEE
Confidence 34330 0111268888886 489999888899999999999999999999987655332 23489999999
Q ss_pred eccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHH
Q 005624 577 CRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARD 649 (687)
Q Consensus 577 ~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~ 649 (687)
||+++.|++|++||+++.+.|.++++++||||++. .|+||||+|.++.+++|+++ ..+++||||||+++|+++
T Consensus 421 ~R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~ 500 (539)
T 2qtl_A 421 CRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKD 500 (539)
T ss_dssp ESCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred ECCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHH
Confidence 99995599999999999999998899999999976 79999999999999999998 578999999996699999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 650 VHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 650 V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 501 V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 501 VHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 99999999999999999999999999999999999999
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=1.5e-73 Score=624.41 Aligned_cols=357 Identities=35% Similarity=0.636 Sum_probs=314.8
Q ss_pred CCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcC
Q 005624 314 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 393 (687)
Q Consensus 314 ~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l 393 (687)
.++.|+|+.|++|++++++|+|+|||||++ ++++|+|||||+|||.|+++.|+++|++||+++++.+.+.....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 567899999999999999999999999997 58999999999999999999999999999999999887754221
Q ss_pred CCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh-------------------------hHHHHHHHhcCCCHHHHHHhCCCC
Q 005624 394 GKSTLPPTFP-PCSLRTALTKYADLLSSPKK-------------------------DEYAQWIVASQRSLLEVMSEFPSA 447 (687)
Q Consensus 394 ~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k-------------------------~~y~~~i~~~~~~l~dvl~~fps~ 447 (687)
.....|++ |||++++|++ +||+++|+| ++|.+|+...+++++|+|.+||++
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~ldvL~~fps~ 155 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPAC 155 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSHHHHHHHTTTTTCBHHHHHHHCTTC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCchHHHHHHhccCCCHHHHHHhCCCC
Confidence 11234677 8999999999 999999887 347778888899999999999999
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCc-cccCccchhhcccCCCCCCCCCceeeEEEe-
Q 005624 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR- 525 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~-~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~- 525 (687)
++|+++|++. +|+++||+|||||+|..+++.++|+|+++.+.+..|+ .+.|+||+||+++.+|+ .++++++
T Consensus 156 ~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~v~~ 228 (393)
T 4dql_A 156 EMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCFIST 228 (393)
T ss_dssp CCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEEEEC
T ss_pred CCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEEEEc
Confidence 9999999975 6999999999999998778999999999888776664 46799999999987765 4677665
Q ss_pred -eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 526 -QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 526 -~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
.|+|++|.++.+|+||||+|||||||++|+|+|......+...++++||||||++..|++|++||+++.+.+.+ ++++
T Consensus 229 P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~l~~ 307 (393)
T 4dql_A 229 PQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-TLHT 307 (393)
T ss_dssp CSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-EEEE
T ss_pred CCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-EEEE
Confidence 47899998888999999999999999999999876655554567899999999965599999999999988766 7999
Q ss_pred EEec-CCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005624 605 AFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 683 (687)
Q Consensus 605 afSr-~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 683 (687)
+||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||+
T Consensus 308 a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 387 (393)
T 4dql_A 308 AFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYA 387 (393)
T ss_dssp EESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 9999 556899999999999999999998999999999988999999999999999999999999999999999999999
Q ss_pred EeeC
Q 005624 684 RDVW 687 (687)
Q Consensus 684 ~Dvw 687 (687)
+|||
T Consensus 388 ~dv~ 391 (393)
T 4dql_A 388 KDVW 391 (393)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9999
No 7
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=1.4e-70 Score=597.82 Aligned_cols=347 Identities=32% Similarity=0.600 Sum_probs=314.9
Q ss_pred ccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCC
Q 005624 308 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 387 (687)
Q Consensus 308 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~ 387 (687)
..|+.++|+.|+|+.|++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.+.
T Consensus 4 ~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~--- 80 (374)
T 1ddg_A 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE--- 80 (374)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET---
T ss_pred CCCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC---
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred CCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCCh----------------------hHHHHHHHhcCCCHHHHHHhCC
Q 005624 388 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----------------------DEYAQWIVASQRSLLEVMSEFP 445 (687)
Q Consensus 388 ~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k----------------------~~y~~~i~~~~~~l~dvl~~fp 445 (687)
+ .|||++++|++|+||+ +|+| ++|.+|+. +++++|+|.+||
T Consensus 81 --~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~L~~l~~~~~~~~~~~~--~~~~~~vl~~~p 143 (374)
T 1ddg_A 81 --G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSETLLPLVGDKAKLQHYAA--TTPIVDMVRFSP 143 (374)
T ss_dssp --T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHH--HSCHHHHHHHSC
T ss_pred --C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHHHHHHhcChHHHHHHHc--CCCHHHHHHHCC
Confidence 1 1789999999999999 7775 46778876 589999999999
Q ss_pred CCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEE
Q 005624 446 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 446 s~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v 524 (687)
+ ++++|||+.+ .+++++|+|||||+|..+++.++|+|+++.+.+. |+.+.|+||+||++ +.+|+ .++|++
T Consensus 144 ~-~~~~Gq~v~l-~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~v~v~~ 214 (374)
T 1ddg_A 144 A-QLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------EVRVFI 214 (374)
T ss_dssp C-CCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------EEEEEE
T ss_pred C-CCCHHHHHhh-ccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------EEEEEE
Confidence 9 9999999975 5889999999999998667899999998877665 77789999999998 66654 578888
Q ss_pred e-eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005624 525 R-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 525 ~-~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~ 603 (687)
+ .+.|++|.++.+|+||||+|||||||++|++++...+. .++++||||||+++.|++|++||+++.+.+.+++++
T Consensus 215 ~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~ 290 (374)
T 1ddg_A 215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRID 290 (374)
T ss_dssp ECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEE
T ss_pred eeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEE
Confidence 5 46899998888999999999999999999999987542 378999999999844999999999999999888999
Q ss_pred EEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005624 604 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 683 (687)
Q Consensus 604 ~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 683 (687)
++|||++..|+|||++|.++.+.+++++.++++|||||++++|+++|.++|.+|++++++++.++|++|+++|+++|||+
T Consensus 291 ~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 370 (374)
T 1ddg_A 291 LAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQ 370 (374)
T ss_dssp EEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEE
T ss_pred EEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Confidence 99999988899999999999999999887899999999448999999999999999999999999999999999999999
Q ss_pred EeeC
Q 005624 684 RDVW 687 (687)
Q Consensus 684 ~Dvw 687 (687)
+|||
T Consensus 371 ~dv~ 374 (374)
T 1ddg_A 371 RDVY 374 (374)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9999
No 8
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=1e-70 Score=610.28 Aligned_cols=371 Identities=35% Similarity=0.655 Sum_probs=324.8
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCC-CCccCCCCeEEEeccCCHHHHHHHHHHhCC--CCCceEEEee
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHT 385 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l--~~d~~~~i~~ 385 (687)
.|+.++|+.|+|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|++++++||+ ++|+.++++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4677899999999999999999999999999999875 799999999999999999999999999976 7789998875
Q ss_pred CCCCCCcCC---CCCCCCCCCcCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCC
Q 005624 386 DKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRS 436 (687)
Q Consensus 386 ~~~~~~~l~---~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~ 436 (687)
.+++..+.. ....+.+|||||++++|++|+||+++|+| ++|.+|+...+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~ 183 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPT 183 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHHHHHHHHCCC
T ss_pred cccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhcCHHHHHHHHhccCCC
Confidence 322111110 01224577899999999999999999986 4688999999999
Q ss_pred HHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC--ccccCccchhhcccCCCCCC
Q 005624 437 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEKS 514 (687)
Q Consensus 437 l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g--~~~~G~~S~~L~~~~~~~~~ 514 (687)
++|+|.+||++++|+++++.. +|+++||+|||||+|..+++.++++|+++.+.++.| +.+.|+||+||+++.+|+
T Consensus 184 i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd-- 260 (435)
T 1f20_A 184 MVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD-- 260 (435)
T ss_dssp HHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC--
T ss_pred HHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC--
Confidence 999999999999999999975 699999999999999876789999999887776644 678899999999887765
Q ss_pred CCCceeeEEEe-eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeccCCcccccHHHHHH
Q 005624 515 NDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNN 592 (687)
Q Consensus 515 ~~~~~~~v~v~-~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~LffG~R~~~~D~ly~del~~ 592 (687)
.++|+++ .++|++|.++.+|+||||+|||||||++|++++..... .+...++++||||||+++.|++|++||++
T Consensus 261 ----~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~ 336 (435)
T 1f20_A 261 ----VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQ 336 (435)
T ss_dssp ----EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHH
T ss_pred ----EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHH
Confidence 5788886 56899998888999999999999999999999987431 22234799999999999778999999999
Q ss_pred HHHcCCCcEEEEEEecCCCC-ccccchhhhcc-hHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005624 593 FVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 669 (687)
Q Consensus 593 ~~~~g~~~~l~~afSr~~~~-k~yVq~~l~e~-~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a 669 (687)
+.+.+.+++++++|||++.. ++||||+|.++ .+.+++++ ..+++|||||| ++|+++|.++|.+|+.++++++.++|
T Consensus 337 ~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~~a 415 (435)
T 1f20_A 337 AKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDA 415 (435)
T ss_dssp HHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999888899999998654 89999999988 78888877 57899999999 68999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005624 670 ESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 670 ~~~~~~l~~~gRy~~Dvw 687 (687)
++|+++|+++|||++|||
T Consensus 416 ~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 416 GVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 999999999999999999
No 9
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=3.9e-37 Score=327.36 Aligned_cols=273 Identities=24% Similarity=0.453 Sum_probs=222.9
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.++..+|+.++|+.+++++..+++++++||+|+.++. +.|+||++|.|+++|.. .
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------~ 85 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------K 85 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC------------------------c
Confidence 4556778899999999999877788999999998764 89999999999877531 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ .++.+|+||
T Consensus 86 ~g---------------------------------------------------------------------~~~~~R~yS 96 (314)
T 1fnb_A 86 NG---------------------------------------------------------------------KPHKLRLYS 96 (314)
T ss_dssp TS---------------------------------------------------------------------SBCCCEEEE
T ss_pred CC---------------------------------------------------------------------CcCCceeEe
Confidence 00 013579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCc-ccCCCCCCCeEEEec
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF-KLPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImIa~ 544 (687)
|+|+|.. .++.++|+|+.+.+.+..|+.+.|.||+||+++.+|+ .+.|..+.|+| .+|.+...|+||||+
T Consensus 97 i~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIag 170 (314)
T 1fnb_A 97 IASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA------EVKLTGPVGKEMLMPKDPNATIIMLGT 170 (314)
T ss_dssp CCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC------EEEEEEEECSTTCCBSCTTCEEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC------EEEEEeccCCceeCCCCCCCCEEEEeC
Confidence 9999863 3578999998776666667777899999999987765 46777777876 456556789999999
Q ss_pred CCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||++|++++......+ ...++++||||||+++ |++|.+||+++.+.+. .+++++++||+++ .++|||+
T Consensus 171 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~ 249 (314)
T 1fnb_A 171 GTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQT 249 (314)
T ss_dssp GGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHH
T ss_pred CccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechH
Confidence 999999999999987543111 1136899999999986 9999999999998765 6789999999743 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+|.+..+.+++.+. .++.||+||| ++|+++|.++|.+++.+.+ . +|++++++|+++|||++|||
T Consensus 250 ~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 250 RMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DWIEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hHHHHHHHHHHCCcEEEecC
Confidence 99988777777663 6889999999 8999999999999998765 3 47889999999999999999
No 10
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=7.7e-37 Score=323.41 Aligned_cols=274 Identities=25% Similarity=0.449 Sum_probs=221.4
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+...|+.++|+.+++|++.+++++++|++|++.+..+.|+||+++.|+++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778899999999999888888999999998866789999999999877631 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ .+..+|+||
T Consensus 71 ~g---------------------------------------------------------------------~~~~~R~yS 81 (304)
T 2bmw_A 71 NG---------------------------------------------------------------------KPEKLRLYS 81 (304)
T ss_dssp TS---------------------------------------------------------------------CBCCCEEEE
T ss_pred cC---------------------------------------------------------------------CCCCCccee
Confidence 00 013579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCC-CccccCccchhhcccCCCCCCCCCceeeEEEeeCCc-ccCCCCCCCeEEEe
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF-KLPADAKVPIIMIG 543 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~-g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImIa 543 (687)
|+|+|.. .++.++|+|+.+.+.++. |..+.|.||+||+++.+|+ .+.|..+.|.| .+|.+..+|+||||
T Consensus 82 ias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIa 155 (304)
T 2bmw_A 82 IASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS------EVKITGPVGKEMLLPDDPEANVIMLA 155 (304)
T ss_dssp BCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC------EEEEEEEECSSSCCCSCTTCEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC------EEEEEeccCCceeCCCCCCCCEEEEe
Confidence 9999853 357899999876554432 4456899999999987765 46777777765 56766678999999
Q ss_pred cCCcchhHHHHHHHHHHhhhc----C-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cc
Q 005624 544 PGTGLAPFRGFLQERFALQEA----G-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TK 613 (687)
Q Consensus 544 ~GTGIAPfrsflq~r~~~~~~----~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k 613 (687)
+|||||||++|+++++..... + ...++++||||||+.+ |++|.+||+++.+.+. .+++++++||+++ .+
T Consensus 156 gGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 234 (304)
T 2bmw_A 156 GGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGR 234 (304)
T ss_dssp EGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSB
T ss_pred cCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCc
Confidence 999999999999998654311 0 1136899999999986 9999999999988764 6789999999742 47
Q ss_pred cccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 614 EYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 614 ~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.|||+++.++.+.+++++ ..++.||+||| ++|+++|+++|.+++.+.| ++ +++++++|+++|||++|||
T Consensus 235 ~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 235 MYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-VT---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp CCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-CC---HHHHHHHHHHTTCEEEEEC
T ss_pred ceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cc---HHHHHHHHHHcCCeEEecC
Confidence 899999998888888766 45789999999 8999999999999998764 44 6789999999999999999
No 11
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=8.8e-37 Score=324.18 Aligned_cols=273 Identities=23% Similarity=0.447 Sum_probs=225.2
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+...|+.++|+.+++++..+....++||+|+.. ..+.|+||.|+.|.++... .
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~~------------------------~ 81 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADGED------------------------K 81 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSBC------------------------T
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCCcC------------------------C
Confidence 46678899999999999987767778999999965 4789999999999754210 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+| -++.+|+||
T Consensus 82 ~g---------------------------------------------------------------------~~~~~R~yS 92 (310)
T 3vo2_A 82 NG---------------------------------------------------------------------KPHKLRLYS 92 (310)
T ss_dssp TS---------------------------------------------------------------------CBCCCEEEE
T ss_pred CC---------------------------------------------------------------------CcCcceeee
Confidence 00 123579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcc-cCCCCCCCeEEEec
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK-LPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~-lp~~~~~PiImIa~ 544 (687)
|+|+|.. .++.++|+|+.+.+.+..|+.+.|.||+||+++.+|+ .+.|..+.|.|. +|.+..+|+||||+
T Consensus 93 ias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIag 166 (310)
T 3vo2_A 93 IASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------DVKITGPVGKEMLMPKDPNATVIMLAT 166 (310)
T ss_dssp CCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC------EEEEEEEECSTTCCBSCTTCEEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEeC
Confidence 9999963 3578999998877777778888999999999987765 466777777654 56667789999999
Q ss_pred CCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||++|++++....... ...++++||||||+.+ |++|.+||+++.+.+. .+++++++||++. .++|||+
T Consensus 167 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~ 245 (310)
T 3vo2_A 167 GTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQT 245 (310)
T ss_dssp GGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHH
T ss_pred CcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHH
Confidence 999999999999987543211 1136899999999997 9999999999998865 6789999999753 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++.+..+.+++++. +++.||+||| ++|+++|+++|.+++.+.+ + ++++|+++|+++|||++|||
T Consensus 246 ~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 246 RMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DWMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CHHHHHHHHHHCCceEEecC
Confidence 99998888888774 6899999999 8999999999999998875 3 47889999999999999999
No 12
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=5.7e-36 Score=328.98 Aligned_cols=274 Identities=25% Similarity=0.434 Sum_probs=223.1
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+...|+.++|+.+++++...++++++||+|++++..+.|+||++|.|++++.. .
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 171 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------K 171 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE------------------------T
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC------------------------c
Confidence 3566788999999999999877888999999998765689999999999876521 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+| .+..+|+||
T Consensus 172 ~g---------------------------------------------------------------------~~~~~R~yS 182 (402)
T 2b5o_A 172 NG---------------------------------------------------------------------KPHKLRLYS 182 (402)
T ss_dssp TT---------------------------------------------------------------------EECCCEEEE
T ss_pred CC---------------------------------------------------------------------CccCceeee
Confidence 00 013579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCC-CCccccCccchhhcccCCC-CCCCCCceeeEEEeeCCc-ccCCCCCCCeEEE
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPM-EKSNDCSWAPIFVRQSNF-KLPADAKVPIIMI 542 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~-~g~~~~G~~S~~L~~~~~~-~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImI 542 (687)
|+|+|.. .++.++|+|+.+.+.++ .++.+.|.||+||+++.+| + .+.|..+.|+| .+|.+..+|+|||
T Consensus 183 Ias~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d------~v~v~gP~G~~~~l~~~~~~~vvlI 256 (402)
T 2b5o_A 183 IASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTD------DVKITGPVGKEMLLPDDEDATVVML 256 (402)
T ss_dssp BCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCC------CEEEEEEECSTTCCCSCTTCEEEEE
T ss_pred ccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCc------eEEEEcccCCcccCCccCCCCEEEE
Confidence 9999863 25789999987655442 3455689999999998776 5 36677777775 5676667899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Ccccc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYV 616 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yV 616 (687)
|+|||||||++|++++......+ ...++++||||||+++ |++|.+||+++.+.+. .+++++++||+++ .++||
T Consensus 257 AgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v 335 (402)
T 2b5o_A 257 ATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYV 335 (402)
T ss_dssp EEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCH
T ss_pred EcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccch
Confidence 99999999999999987543211 1136899999999986 9999999999998765 6789999999743 57899
Q ss_pred chhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 617 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 617 q~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|++|.+..+.+++++ ..++.||+||| ++|+++|.++|.+++.+.+. .+++++++|+++|||++|||
T Consensus 336 ~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~----~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 336 QSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL----NWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----CHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEEEecC
Confidence 999999888888877 46889999999 89999999999999988753 47789999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=4.8e-34 Score=303.47 Aligned_cols=277 Identities=21% Similarity=0.338 Sum_probs=212.9
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCc---------eEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCce
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTY 380 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~ 380 (687)
+....|+.++|+.+++|+...++++ ++||+|+.++..+.|+||+++.|.++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4456788999999999997766666 9999999876668999999999998774210
Q ss_pred EEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcC
Q 005624 381 FSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 460 (687)
Q Consensus 381 ~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p 460 (687)
+.+. . +.+|
T Consensus 81 ---------g~~~----------------------~------------------------~~~~---------------- 89 (314)
T 2rc5_A 81 ---------KKAK----------------------G------------------------LADV---------------- 89 (314)
T ss_dssp ---------HHHT----------------------T------------------------CSCC----------------
T ss_pred ---------cCcc----------------------c------------------------hhhc----------------
Confidence 0000 0 0011
Q ss_pred CCcccccccCCCCCC---CCCeEEEEEEEEEeeCCCCcc-ccCccchhhcccCCCCCCCCCceeeEEEeeCCcc-cCC-C
Q 005624 461 RLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK-LPA-D 534 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~g~~-~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~-lp~-~ 534 (687)
++.+|+|||+|+|.. .++.++|+|+++.+.++.|+. +.|.||+||.++.+|+ .+.|..+.|+|. +|. +
T Consensus 90 ~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~ 163 (314)
T 2rc5_A 90 GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGD------EVTMTGPSGKKFLLPNTD 163 (314)
T ss_dssp BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTC------EEEEEEEECSSSCCCSSC
T ss_pred CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcC------EEEEEeccCCceeCCCCC
Confidence 156899999999852 357899998876444444543 5799999999977765 467777778765 454 4
Q ss_pred CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC---
Q 005624 535 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 611 (687)
Q Consensus 535 ~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~--- 611 (687)
..+|+||||+|||||||++|++++..... ....++++||||||+++ |++|.+||+++.+++..+++++++||++.
T Consensus 164 ~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 241 (314)
T 2rc5_A 164 FSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVMMDYLKGLESKHKNFKLITAISREEKNSF 241 (314)
T ss_dssp BCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCSHHHHHHHHHHHSSEEEEEEETTTCBCTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhHHHHHHHHHHhCCcEEEEEEECCCCCccc
Confidence 57899999999999999999999875421 11236899999999997 99999999999876556789999999742
Q ss_pred --CccccchhhhcchHHHHhcc-cCCcEEEEE-CCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 612 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVC-GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 612 --~k~yVq~~l~e~~~~v~~~i-~~~~~iYvC-G~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.++|||+++.+..+.+++.+ ..++. |+| || ++|+++|++.|.++.. .++ .++.|+.+|+++|||++|+|
T Consensus 242 ~g~~~~v~~~l~~~~~~l~~~~~~~~~~-yvCGGp-~~m~~~v~~~L~~~g~--~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 242 DGGRMYISHRVREQAEAVKKILNGGGRF-YICGGP-KGMEKGVIEEIQKISG--NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp TSSBCCHHHHHHHTHHHHHHHHHHTCEE-EEEESS-TTTHHHHHHHHHHHHT--CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceehhHHHHHhHHHHHHHhhcCCeE-EEeCCc-HHHHHHHHHHHHHHHh--ccc---hHHHHHHHHHHCCCEEEecC
Confidence 46899999998877777766 34444 999 98 8999999999999865 233 46789999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1.1e-33 Score=300.28 Aligned_cols=274 Identities=26% Similarity=0.416 Sum_probs=213.6
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~ 389 (687)
++...++.++|+..+.++.++...+++++.|..+. .+.|+||.++.|..+.... ..+
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~~~~----------------------~~~ 79 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP----------------------KKP 79 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBCT----------------------TST
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCCCcc----------------------ccC
Confidence 44567788999999999865555779999998764 5899999999886432100 000
Q ss_pred CCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCccccccc
Q 005624 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSI 469 (687)
Q Consensus 390 ~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSI 469 (687)
-.++.+|+|||
T Consensus 80 ---------------------------------------------------------------------g~~~~~R~ySi 90 (311)
T 3lo8_A 80 ---------------------------------------------------------------------GAPQNVRLYSI 90 (311)
T ss_dssp ---------------------------------------------------------------------TCBCCCEEEEB
T ss_pred ---------------------------------------------------------------------CCCCCceeeEe
Confidence 01235899999
Q ss_pred CCCCCC---CCCeEEEEEEEEEee-CCC---CccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCC--CCCCCeE
Q 005624 470 SSSPRV---APSRIHVTCALVYEK-TPT---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA--DAKVPII 540 (687)
Q Consensus 470 sSsp~~---~~~~i~itv~~v~~~-~~~---g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~--~~~~PiI 540 (687)
+|+|.. .++.++|+|+.+.+. +.. ++...|.+|+||+++.+|+ .+.|..+.|.|.+.. +...|+|
T Consensus 91 as~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~~v 164 (311)
T 3lo8_A 91 ASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD------KIQLTGPSGKIMLLPEEDPNATHI 164 (311)
T ss_dssp CSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTC------EEEEEEEECCTTCCCCSCTTCEEE
T ss_pred cCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcC------EEEEEeccCCcccCCCcCCCCCEE
Confidence 999964 247899998765322 222 2236799999999977765 467777778776533 3578999
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCC-CCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Ccc
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKE 614 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~~~~-~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~ 614 (687)
|||+|||||||++|++++......+.. .++++||||||+.+ |++|.+||+++.+.+. .+++++++||++. .++
T Consensus 165 lIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~ 243 (311)
T 3lo8_A 165 MIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKM 243 (311)
T ss_dssp EEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHHHHHHHCTTTEEEEEEETTTC-------C
T ss_pred EEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcc
Confidence 999999999999999998764321111 26799999999987 9999999999998865 6789999999753 479
Q ss_pred ccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 615 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 615 yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|||+.+.+..+.+++++..++.||+||| ++|+++|+++|.+++.+.+ .++++++++|+++|||++|||
T Consensus 244 ~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g----~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 244 YVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp CHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT----CCHHHHHHHHHHTTCEEEEEC
T ss_pred eehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHCCcEEEecC
Confidence 9999999988888877778899999999 8999999999999998875 367899999999999999999
No 15
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=282.78 Aligned_cols=153 Identities=31% Similarity=0.472 Sum_probs=138.8
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
...++|+|+|||||||||.+|++|++.+. .+ ..++++++++++++ ++..++.+||++||||+|+||+|++.
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g--~~v~v~~l~~~~~~------~l~~~~~vI~~tsTyG~Ge~Pdna~~ 108 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALFS-CA--FNPKVVCMDKYRLS------CLEEERLLLVVTSTFGNGDCPGNGEK 108 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEEGGGCCGG------GGGTCSEEEEEEECBTTTBCCGGGHH
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHHH-cC--CCeEEEEcccCCHh------HhccCCeEEEEEeccCCCcCCHHHHH
Confidence 34678999999999999999999999884 43 46789999999853 47789999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
|+++|.... ..|++++||||||||++|++||.+++.++++|+++||++++|+|+||+..+.+++|+.|++.||++|+
T Consensus 109 F~~~L~~~~---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~ 185 (219)
T 3hr4_A 109 LKKSLFMLK---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAAC 185 (219)
T ss_dssp HHHHHHHCC---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHH
Confidence 999998642 35899999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhhCC
Q 005624 262 NLLRD 266 (687)
Q Consensus 262 ~~~~~ 266 (687)
+.+..
T Consensus 186 ~~~~~ 190 (219)
T 3hr4_A 186 ETFDV 190 (219)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 98864
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=1.4e-32 Score=292.83 Aligned_cols=291 Identities=23% Similarity=0.357 Sum_probs=206.6
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.++|+.+.+|+.++....++||+|+.. ..+.|.+|+.++|.|+..+..= ..+ . . ...
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~~-----~~~----~--~---~~~ 73 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELDN-----NPN----N--Q---INK 73 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCccccc-----ccc----c--c---ccc
Confidence 46788999999999999998888899999999985 4699999999999998764320 000 0 0 000
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++.-+ -+ ++.++-.+ + . ...+-+...+|+||
T Consensus 74 ~~~~~----------~~------~~~~~h~~-----------------~---------~-------~~~~~g~~~~R~yS 104 (316)
T 3jqq_A 74 DHNII----------NT------TNHTNHNN-----------------I---------A-------LSHIKKQRCARLYS 104 (316)
T ss_dssp ------------------------------------------------------------------------CCCCEEEE
T ss_pred ccccc----------cc------cccccccc-----------------c---------c-------cccCCCcccceeee
Confidence 01000 00 00000000 0 0 00122567899999
Q ss_pred cCCCCCCCCCeEEEEEEEEEeeCC---CCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCC---CCCCeEEE
Q 005624 469 ISSSPRVAPSRIHVTCALVYEKTP---TGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD---AKVPIIMI 542 (687)
Q Consensus 469 IsSsp~~~~~~i~itv~~v~~~~~---~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~---~~~PiImI 542 (687)
|||+|.. +.++|+|+++.+.++ .++.+.|.||+||.++.+|+ .+.|..+.|.|.+|.+ ..+|+|||
T Consensus 105 IaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~l~~~~~~~~~~vvlI 176 (316)
T 3jqq_A 105 ISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND------DIYLTGAHGYFNLPNDAIQKNTNFIFI 176 (316)
T ss_dssp BCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC------EEEEEEEECCCCCCTTHHHHTCCEEEE
T ss_pred cccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC------EEEEEecCCceEcCCcccCCCCcEEEE
Confidence 9999964 579998876643321 23557899999999887765 4677777889999876 37899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhc------CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC---C
Q 005624 543 GPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP---T 612 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~------~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~---~ 612 (687)
|+|||||||++|++++...... +...++++||||||+++ |++|.+||+++.++.. .+++++++||++. .
T Consensus 177 AgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~~~~~~~~~~~~~s~~~~~~g~ 255 (316)
T 3jqq_A 177 ATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNELEYFQKMYPNNINIHYVFSYKQNSDAT 255 (316)
T ss_dssp EEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEEGGGCC---C
T ss_pred eCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHHHHHHHHHhCCCcEEEEEEECCCcccCCC
Confidence 9999999999999998764321 11237899999999997 9999999999998754 6689999999752 6
Q ss_pred ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 613 KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 613 k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++|||+.+.+....+++++ ..++.||+||| ++|+++|.+.|.+. +.++. ...+|++.|+|
T Consensus 256 ~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~----G~~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 256 SFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSH----DQFDE----------KKKKRVHVEVY 316 (316)
T ss_dssp BCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC--------CH----------HHHTTEEEEEC
T ss_pred ccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHc----CCCcc----------cccccEEEEeC
Confidence 8999999999888888877 46899999999 89999888877643 33332 34578888876
No 17
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=1.5e-27 Score=235.44 Aligned_cols=148 Identities=30% Similarity=0.632 Sum_probs=130.1
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..+++++|+|+|+|||||++|+.|++.+.+.+ ..+++++++++. .++..++.+||++||| +|++|+++..
T Consensus 19 ~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~v~~l~~~~-------~~l~~~d~vi~g~~Ty-~G~~p~~~~~ 88 (191)
T 1bvy_F 19 AHNTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVTASY-NGHPPDNAKQ 88 (191)
T ss_dssp --CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEECCB-TTBCCTTTHH
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHHHHhCC--CceEEeeHHHhh-------hhhhhCCeEEEEEeec-CCCcCHHHHH
Confidence 34688999999999999999999999998765 456788888753 2477889999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (687)
|+++|.... ...|++++|+|||+||++| ++||.+++.++++|+++||+++.+.+++|++.+.+++|.+|.+.||+.|
T Consensus 89 fl~~L~~~~--~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l 166 (191)
T 1bvy_F 89 FVDWLDQAS--ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 166 (191)
T ss_dssp HHHHHHTCC--SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHh
Confidence 999997532 2358999999999999999 6999999999999999999999999999886667777999999999999
Q ss_pred H
Q 005624 261 D 261 (687)
Q Consensus 261 ~ 261 (687)
.
T Consensus 167 ~ 167 (191)
T 1bvy_F 167 A 167 (191)
T ss_dssp H
T ss_pred c
Confidence 6
No 18
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.93 E-value=7.3e-26 Score=218.71 Aligned_cols=151 Identities=29% Similarity=0.415 Sum_probs=129.0
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..|++++|+|+|+||||+++|+.|++.+.+.+ ..++++++++++. .++.+++.+||++||||.|++|+++..
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pt~g~G~~p~~~~~ 78 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVA 78 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHH
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeehhhCCH------HHhccCCeEEEEEcccCCCcCChhHHH
Confidence 34678999999999999999999999998765 3467888888764 347788999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
|+++|... ....|++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+| .+.++++.+|.+++++.|.
T Consensus 79 f~~~l~~~--~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~ 154 (167)
T 1ykg_A 79 LHKFLFSK--KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALK 154 (167)
T ss_dssp HHHHHTST--TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHH
Confidence 99999752 1235899999999999999999999999999999999999999998887 3568999999999999987
Q ss_pred hhh
Q 005624 262 NLL 264 (687)
Q Consensus 262 ~~~ 264 (687)
...
T Consensus 155 ~~~ 157 (167)
T 1ykg_A 155 SRA 157 (167)
T ss_dssp TCC
T ss_pred hhc
Confidence 654
No 19
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.92 E-value=5.9e-26 Score=214.44 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=124.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++++|+|+|+||||+++|+.|++.+.+.+ ..+.++++.+ . .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~--~------~~l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAG--FTTETLHGPL--L------EDLPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTT--CCEEEECCTT--S------CSSCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEecCCC--H------HHcccCCeEEEEECccCCCCCChhHHHHH
Confidence 568999999999999999999999998765 3456665532 2 24677899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (687)
++|.... ..+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|... +.++++.+|.+++++.|
T Consensus 71 ~~l~~~~---~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQK---PDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHHC---CCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhc---cccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 9997631 24889999999999999999999999999999999999999999988743 56788999999999876
No 20
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.91 E-value=7.2e-24 Score=217.53 Aligned_cols=182 Identities=17% Similarity=0.268 Sum_probs=143.4
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.|..+.
T Consensus 44 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~Gd------~v~v~gP~ 107 (250)
T 1tvc_A 44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVGQ------VLSVKGPL 107 (250)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSSS------EEEEEEEE
T ss_pred cCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCCC------EEEEEcCc
Confidence 3568887655565 56899999999863 46788877532 3589999996 777765 46677778
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+...|++|||+|||||||++++++....+ ...+++||||+|+.+ |++|.+||+++.+....+++++++
T Consensus 108 G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (250)
T 1tvc_A 108 GVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT----APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACV 182 (250)
T ss_dssp CCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT----CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECC
T ss_pred cccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEe
Confidence 999988765689999999999999999999987643 136899999999997 999999999998766667899999
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||+++ .++||++.+.+. +.+. ..+..+|+||| ++|+++|.+.|.+
T Consensus 183 s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~ 231 (250)
T 1tvc_A 183 WHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRS 231 (250)
T ss_dssp SSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHH
T ss_pred ccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98532 467898877643 2221 25789999999 8999999988864
No 21
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.90 E-value=3.5e-23 Score=215.33 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=132.8
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcc--------cCCC
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK--------LPAD 534 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~--------lp~~ 534 (687)
.+|+|||+|+|. .++.++|+|+++.+.+..+....|.+|+||.++.+|+ .+.|..+.|.|. ++.+
T Consensus 64 ~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~f~l~~~ 136 (275)
T 1umk_A 64 VVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGPSGLLVYQGKGKFAIRPD 136 (275)
T ss_dssp EEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEEECSEEEEETTEEEECSS
T ss_pred EEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcCccceEecCCcccccccc
Confidence 479999999986 3578999887653333223335699999999887765 466666777764 3422
Q ss_pred --------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEE
Q 005624 535 --------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVA 605 (687)
Q Consensus 535 --------~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~a 605 (687)
...|+||||+|||||||+++++++.... ...++++||||+|+.+ |++|.+||+++.++.. .++++++
T Consensus 137 ~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 212 (275)
T 1umk_A 137 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLWYT 212 (275)
T ss_dssp TTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEE
T ss_pred ccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEEEEEE
Confidence 3578999999999999999999986531 1236899999999986 9999999999987754 5688999
Q ss_pred EecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHH-HHHHHHHHH
Q 005624 606 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTI 657 (687)
Q Consensus 606 fSr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~-~V~~~L~~i 657 (687)
+||++. .++||++.+.+. .......++.+|+||| ++|++ +|++.|.+.
T Consensus 213 ~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 213 LDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp ESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred EcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 998643 356787654321 1111125789999999 89999 888888653
No 22
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.90 E-value=6.3e-24 Score=222.51 Aligned_cols=182 Identities=18% Similarity=0.341 Sum_probs=137.6
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEee--CC-C---CccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCC
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD 534 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~--~~-~---g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~ 534 (687)
...+|+|||+|+|.. .+.++|+|+++... +. . .+...|.+|+||.++.+|+ .+.|..+.|+|.++.
T Consensus 83 ~~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~- 154 (290)
T 2r6h_A 83 EETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD- 154 (290)
T ss_dssp SCEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-
T ss_pred CCcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-
Confidence 356799999999863 47888887643110 00 0 1235799999999977765 467777889998864
Q ss_pred CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC---
Q 005624 535 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 611 (687)
Q Consensus 535 ~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~--- 611 (687)
..+|+||||+|||||||++|+++++.... ..++++||||||+++ |++|.+||+++.+.+..+++++++||+..
T Consensus 155 ~~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 230 (290)
T 2r6h_A 155 TDAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDN 230 (290)
T ss_dssp SSCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGC
T ss_pred CCCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccC
Confidence 46899999999999999999999876432 236899999999997 99999999999887777799999998642
Q ss_pred ---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 612 ---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 612 ---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.++||++.+.+.. +.+.. ..++.+|+||| ++|+++|++.|.+.
T Consensus 231 ~~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 231 WTGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp CCSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CCCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3678887764321 11111 24678999999 89999999988653
No 23
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.90 E-value=1.1e-23 Score=213.47 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=138.1
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchh-hcccCCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~-L~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|...+|+|||+|+|.. ++.++|+|+++ ..|.+|+| +.++.+|+ .+.|..+.|
T Consensus 30 ~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~G 93 (232)
T 1qfj_A 30 FRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPHG 93 (232)
T ss_dssp CCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEEC
T ss_pred cCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCcc
Confidence 357898876667778899999999863 46888887643 23666775 66666655 467777789
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|.++.+...|++|||+|||||||+++++++...+ ...+++||||+|+.+ |++|.+||+++.+++..++++.++|
T Consensus 94 ~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s 168 (232)
T 1qfj_A 94 EAWLRDDEERPMILIAGGTGFSYARSILLTALARN----PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVE 168 (232)
T ss_dssp SCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC----TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEES
T ss_pred ceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEEc
Confidence 99988666789999999999999999999987643 136899999999997 9999999999988776778999999
Q ss_pred cCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHH
Q 005624 608 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 654 (687)
Q Consensus 608 r~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L 654 (687)
|+++ .++||++.+.+.. .+ ..+..+|+||| ++|+++|++.|
T Consensus 169 ~~~~~~~g~~g~v~~~~~~~~---~~--~~~~~vyvCGp-~~m~~~v~~~l 213 (232)
T 1qfj_A 169 QPEAGWRGRTGTVLTAVLQDH---GT--LAEHDIYIAGR-FEMAKIARDLF 213 (232)
T ss_dssp SCCTTCCSEESCHHHHHHHHC---SC--CTTCEEEEESC-HHHHHHHHHHH
T ss_pred CCCCCcCCceeeHHHHHHHhc---CC--ccccEEEEECC-HHHHHHHHHHH
Confidence 8653 3578887765431 11 25689999999 89999998877
No 24
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.89 E-value=9.8e-24 Score=199.10 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=123.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhcc-CCCeEEEEeeCCCC--CCCCchHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KENIVFFFLATYGD--GEPTDNAA 180 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~~~vi~~~sTyG~--G~~pdna~ 180 (687)
|++++|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+++.+ ++. +++.+||++||||. |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG--HEVTLLNAADASAE------NLADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTBCCT------TTTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEehhhCCHh------HhcccCCEEEEEecccCCCCCCCcHHHH
Confidence 578999999999999999999999998765 46789999988753 467 89999999999998 99999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWP 258 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~ 258 (687)
.|+++|... .+++++++|||+||+.|.+||.+++.+++.|+++|++++.+....+. +. ..+.+.+|.++|++
T Consensus 73 ~fl~~l~~~-----~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 73 SLFEEFDRI-----GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLK 146 (148)
T ss_dssp HHHTTGGGT-----CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHH
T ss_pred HHHHHhhcc-----CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHh
Confidence 999998752 48999999999999999999999999999999999999988666554 23 66788899888765
Q ss_pred H
Q 005624 259 E 259 (687)
Q Consensus 259 ~ 259 (687)
.
T Consensus 147 ~ 147 (148)
T 3f6r_A 147 Q 147 (148)
T ss_dssp T
T ss_pred h
Confidence 3
No 25
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.89 E-value=1.8e-23 Score=213.32 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=140.1
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.|..+.
T Consensus 43 ~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP~ 106 (243)
T 2eix_A 43 PIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVY---------EKGQMSQYIDHLNPGD------FLQVRGPK 106 (243)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC---------TTCHHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEc---------CCCCcchHhhcCCCCC------EEEEECCe
Confidence 56888755444 235799999999863 47888877532 3588999999887765 46677778
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+...+++|||+|||||||+++++++..... ...+++||||+|+.+ |++|.+||+++.+++..+++++++
T Consensus 107 G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (243)
T 2eix_A 107 GQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK---EKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYVL 182 (243)
T ss_dssp CSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEEe
Confidence 8999987667899999999999999999999865321 236899999999996 999999999998876677899999
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
||+.+ .++||++.+.+. +......+..+|+||| ++|+++|.+.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 183 NNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETL 233 (243)
T ss_dssp EECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHH
T ss_pred CCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 98532 357887643221 1111124678999999 89999999888643
No 26
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.89 E-value=1.7e-23 Score=214.21 Aligned_cols=185 Identities=18% Similarity=0.224 Sum_probs=141.2
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
..+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.|. .
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 93 (248)
T 1fdr_A 31 FTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPGD------EVQVVSE 93 (248)
T ss_dssp CCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTTC------EEEEESS
T ss_pred cCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCcC------EEEEecC
Confidence 3578887655552 46799999999863 6788876532 3588999999887765 46666 5
Q ss_pred eeCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEE
Q 005624 525 RQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 602 (687)
Q Consensus 525 ~~~~F~lp~~~-~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l 602 (687)
+.|.|.++.++ ..|++|||+|||||||+++++++.... ...+++||||+|+.+ |++|.+||+++.++. ..+++
T Consensus 94 P~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 168 (248)
T 1fdr_A 94 AAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRI 168 (248)
T ss_dssp CBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEE
T ss_pred CcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEEE
Confidence 67889887653 689999999999999999999864322 136899999999996 999999999998764 35688
Q ss_pred EEEEecCCC---Cccccchhhhcch-HHHHhc-c-cCCcEEEEECCchhhHHHHHHHH-HH
Q 005624 603 IVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HT 656 (687)
Q Consensus 603 ~~afSr~~~---~k~yVq~~l~e~~-~~v~~~-i-~~~~~iYvCG~a~~M~~~V~~~L-~~ 656 (687)
++++||++. .++||++.+.+.. +..... . ..+..+|+||| ++|+++|++.| .+
T Consensus 169 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 228 (248)
T 1fdr_A 169 QTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_dssp EEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHH
Confidence 999999754 3688998876542 222221 2 35789999999 89999999888 54
No 27
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.89 E-value=5.3e-23 Score=209.76 Aligned_cols=181 Identities=17% Similarity=0.292 Sum_probs=138.7
Q ss_pred CChHHHHHHHcCCC-----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.+|.. ++|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||+ ++.+|+ .+.|
T Consensus 34 ~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~v 101 (243)
T 4eh1_A 34 YQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVKL 101 (243)
T ss_dssp CCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEEE
T ss_pred cCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEEE
Confidence 35788886655532 469999999985 36688776532 112335699999997 576665 4677
Q ss_pred EEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 523 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 523 ~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
..+.|.|.++ +...|+||||+|||||||+++++++..... .+++|+||+|+.+ |++|.+||+++.+.+ ..++
T Consensus 102 ~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~~ 173 (243)
T 4eh1_A 102 YAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWMQ 173 (243)
T ss_dssp EEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCEE
T ss_pred EccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeEE
Confidence 7788999988 567899999999999999999999876431 2399999999997 999999999998877 6689
Q ss_pred EEEEecCCC---CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 603 IVAFSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 603 ~~afSr~~~---~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++++|++.. .+++++..+. .+-..+..||+||| ++|+++|++.|.+.
T Consensus 174 ~~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 174 QVWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLAL 223 (243)
T ss_dssp EEEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 999998654 2455554433 12236789999999 89999999988754
No 28
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=5.3e-23 Score=220.57 Aligned_cols=179 Identities=23% Similarity=0.288 Sum_probs=142.9
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.|..+.
T Consensus 139 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~ 201 (338)
T 1krh_A 139 FLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAGD------KMSFTGPF 201 (338)
T ss_dssp CCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTTC------EEEEEEEE
T ss_pred cCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCCC------EEEEECCc
Confidence 3578888666665 5689999999986 57888887532 3588999995 676655 46777778
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+ .+|++|||+|||||||+++++++...+ ...+++||||+|+++ |++|.+||+++.+....+++++++
T Consensus 202 G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 275 (338)
T 1krh_A 202 GSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG----SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVV 275 (338)
T ss_dssp CSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC----CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC----CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 99998765 489999999999999999999987643 136899999999996 999999999999877777899999
Q ss_pred ecCCC---CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~---~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||++. .++||++.+.+. .+. ..+..+|+||| ++|+++|++.|.+
T Consensus 276 s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~ 322 (338)
T 1krh_A 276 AHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDT 322 (338)
T ss_dssp TTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHH
T ss_pred ecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHH
Confidence 98653 367899877632 111 24678999999 8999999988865
No 29
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.88 E-value=1.4e-22 Score=221.90 Aligned_cols=179 Identities=15% Similarity=0.235 Sum_probs=138.1
Q ss_pred CChHHHHHHHcCC-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v 245 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVGD------VVKL 245 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTTC------EEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEE
Confidence 3578888655552 3579999999986 46788877532 25999999997 66655 4677
Q ss_pred EEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 523 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 523 ~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
..+.|.|.++.+..+|+||||+|||||||+++++++...+. .++++|+||+|+++ |++|.+||+++.+++...++
T Consensus 246 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 246 VAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp EEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEE
T ss_pred EcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEE
Confidence 78888999986667899999999999999999999876531 36899999999997 99999999999988777789
Q ss_pred EEEEecCCCC---------ccccchhhhcchHHHHhc-ccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 603 IVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 603 ~~afSr~~~~---------k~yVq~~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++++|+++.. +++++... +.+. ...++.+|+||| ++|+++|++.|.+
T Consensus 321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 377 (396)
T 1gvh_A 321 HTWYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVD 377 (396)
T ss_dssp EEEESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 9999986531 23333321 1111 113789999999 8999999988864
No 30
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.87 E-value=1.3e-23 Score=218.26 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=146.5
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
..+|||+.+.+| ....|+|||+|+|. .+.++++++.+ ..|.+|+||+++.+|+ .+.|. .
T Consensus 47 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 109 (271)
T 4fk8_A 47 FNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVGD------PVLIGKK 109 (271)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEESC
T ss_pred cCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCCC------EEEEecC
Confidence 357888765555 23579999999985 35677766422 3589999999887765 46777 6
Q ss_pred eeCCcccCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-----
Q 005624 525 RQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA----- 598 (687)
Q Consensus 525 ~~~~F~lp~-~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~----- 598 (687)
+.|+|.++. +...|++|||+|||||||+++++++...... .+++|+||+|+.+ |++|.+||+++.+++.
T Consensus 110 P~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 184 (271)
T 4fk8_A 110 PTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGDV 184 (271)
T ss_dssp CBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC----SEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHHH
T ss_pred CCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC----CCEEEEEecCCHH-HHhHHHHHHHHHHhCcccccc
Confidence 778898875 3578999999999999999999998765432 6899999999996 9999999999877654
Q ss_pred ---CcEEEEEEecCCC-CccccchhhhcchHHHHh-----cccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005624 599 ---LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWN-----MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 669 (687)
Q Consensus 599 ---~~~l~~afSr~~~-~k~yVq~~l~e~~~~v~~-----~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a 669 (687)
.++++.++||+.. .++||++.+.+.. .+.. ...+++.+|+||| ++|+++|++.|.+......
T Consensus 185 ~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~------- 255 (271)
T 4fk8_A 185 IREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEG------- 255 (271)
T ss_dssp HHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBC-------
T ss_pred ccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchh-------
Confidence 3578888998753 5788888775531 1111 1235789999999 8999999998875433222
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005624 670 ESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 670 ~~~~~~l~~~gRy~~Dvw 687 (687)
++...|+|..|.|
T Consensus 256 -----~i~~~~~~~~E~y 268 (271)
T 4fk8_A 256 -----KNSAPGHYVIERA 268 (271)
T ss_dssp -----BTTBCBSEEEEES
T ss_pred -----hcCCCCcEEEEEe
Confidence 2234678887765
No 31
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.87 E-value=1.1e-22 Score=211.51 Aligned_cols=185 Identities=17% Similarity=0.227 Sum_probs=139.9
Q ss_pred CChHHHHHHHcC----CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005624 449 PPLGVFFAAIVP----RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 523 (687)
Q Consensus 449 ~p~~~~l~~~~p----~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~- 523 (687)
..+|||+.+.+| ...+|+|||+|+|.. +.++|+++.+ ..|.+|+||.++.+|+ .+.|.
T Consensus 44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 106 (272)
T 2bgi_A 44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKV---------PDGPLTSRLQHIKVGE------QIILRP 106 (272)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEEE
T ss_pred cCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEc---------cCCCchhHHHhCCCCC------EEEEee
Confidence 346888865555 235799999999863 6788776532 3589999999887765 46676
Q ss_pred EeeCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHH-HHHH-----c
Q 005624 524 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 596 (687)
Q Consensus 524 v~~~~F~lp~~~-~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~-~~~~-----~ 596 (687)
.+.|.|.++.+. ..|++|||+|||||||+++++++.... ...+++||||+|+.+ |++|.+||+ ++.+ +
T Consensus 107 gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 181 (272)
T 2bgi_A 107 KPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIGE 181 (272)
T ss_dssp EEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTTT
T ss_pred CCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhhc
Confidence 577889887553 689999999999999999999865432 126899999999997 999999999 8887 3
Q ss_pred --CCCcEEEEEEecCCC-Cccccchhhhcch-HHHHhc--c-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 597 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 597 --g~~~~l~~afSr~~~-~k~yVq~~l~e~~-~~v~~~--i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
...++++.++||+.. .++||++.+.+.. +....+ + ..++.+|+||| ++|+++|.+.|.+
T Consensus 182 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 247 (272)
T 2bgi_A 182 LVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLES 247 (272)
T ss_dssp TSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHH
Confidence 245688899998743 4789998886542 111111 2 25789999999 8999999988764
No 32
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.87 E-value=4.2e-22 Score=218.46 Aligned_cols=182 Identities=14% Similarity=0.277 Sum_probs=140.1
Q ss_pred ChHHHHHHHc--C--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005624 450 PLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 521 (687)
Q Consensus 450 p~~~~l~~~~--p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~ 521 (687)
.+|||+.+.+ | . ..+|+|||+|+|. ++.++|+|+... ..+....|.+|+||+ ++.+|+ .+.
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~v~ 253 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------EIK 253 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------EEE
Confidence 4688875443 3 2 3579999999986 367887765321 111135799999996 676655 477
Q ss_pred EEEeeCCcccCCC----CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC
Q 005624 522 IFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597 (687)
Q Consensus 522 v~v~~~~F~lp~~----~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g 597 (687)
|..+.|.|.++.+ ..+|+||||+|||||||++|++++..... .++++||||+|+.+ |++|.+||+++.+++
T Consensus 254 v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~ 328 (399)
T 4g1v_A 254 LSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLAEC 328 (399)
T ss_dssp EEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHTTC
T ss_pred EEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHHhC
Confidence 8888899999876 57899999999999999999999877542 26899999999986 999999999999888
Q ss_pred CCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 598 ~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
...++++++|++. ++++. +.+.+.+..++.+|+||| ++|+++|++.|.+.
T Consensus 329 ~~~~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 329 ANVDKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGS-LAFMQAMIGHLKEL 378 (399)
T ss_dssp SSEEEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 7778999999854 44542 223334445899999999 89999999988653
No 33
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.87 E-value=1.8e-22 Score=221.59 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=138.4
Q ss_pred CChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.+| . ..+|+|||+|+|. .+.++|+|+.+ +.+..+.|.+|+||++ +.+|+ .+.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~v 252 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKL 252 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEE
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEEE
Confidence 357888765444 2 3579999999986 46788877643 1122346999999995 77765 4566
Q ss_pred EEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 523 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 523 ~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
..+.|.|.++.+..+|+||||+|||||||+++++++.. . ..++++||||+|+.+ |++|.+||+++.+++..+++
T Consensus 253 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 253 AAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp CCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEE
T ss_pred ecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEE
Confidence 66778999976667899999999999999999999864 1 236899999999997 99999999999988777789
Q ss_pred EEEEecCCCCc----cccch-hhhcchHHHHhc-ccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 603 IVAFSREGPTK----EYVQH-KMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 603 ~~afSr~~~~k----~yVq~-~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++++|+++... .|.++ ++.. +.+.+. ...++.+|+||| ++|+++|++.|.+
T Consensus 327 ~~~~s~~~~~~~~~~~~~~~G~i~~--~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 383 (403)
T 1cqx_A 327 FVFYDQPLPEDVQGRDYDYPGLVDV--KQIEKSILLPDADYYICGP-IPFMRMQHDALKN 383 (403)
T ss_dssp EEEESSCCTTCCBTTTBSEESSCCG--GGSHHHHCCTTCEEEEESS-HHHHHHHHHHHHH
T ss_pred EEEECCCCcccccccccCcCCCcCH--HHHhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 99999865422 23332 2221 112221 113789999999 8999999988864
No 34
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.87 E-value=1.3e-22 Score=210.40 Aligned_cols=192 Identities=14% Similarity=0.231 Sum_probs=136.4
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcc-ccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~-~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+| ...+|+|||+|+|.. ++.++|+|+++.. +..++. ..|.+|+||.++.+|+ .+.|..
T Consensus 43 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~g 114 (270)
T 2cnd_A 43 LPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVGS------YIDVKG 114 (270)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCCC------EEEEEC
Confidence 356887754333 246799999999863 4789988865421 111121 3599999998887765 466666
Q ss_pred eeCC--------cccCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHH
Q 005624 525 RQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFV 594 (687)
Q Consensus 525 ~~~~--------F~lp~--~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~ 594 (687)
+.|. |.++. +...|+||||+|||||||+++++++..... ...++++||||+|+++ |++|.+||+++.
T Consensus 115 P~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l~ 191 (270)
T 2cnd_A 115 PLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRWA 191 (270)
T ss_dssp EECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHHH
T ss_pred CcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHHH
Confidence 6665 67764 246899999999999999999999876421 1236899999999997 999999999998
Q ss_pred HcCC-CcEEEEEEecC---CC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHH-HHHHHH
Q 005624 595 QSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLH 655 (687)
Q Consensus 595 ~~g~-~~~l~~afSr~---~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~-V~~~L~ 655 (687)
++.. .+++++++|++ +. .++||++.+.+. .......++.+|+||| ++|+++ +++.|.
T Consensus 192 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~ 257 (270)
T 2cnd_A 192 AEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLE 257 (270)
T ss_dssp HHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHH
T ss_pred HHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHH
Confidence 7654 45788899883 11 357888764322 1111124578999999 899986 466665
No 35
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.87 E-value=1e-22 Score=209.81 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=137.4
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
..+|||+.+.+| ....|+|||+|+|.. +.++++++.+ ..|.+|+||.++.+|+ .+.|. .
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 93 (257)
T 2qdx_A 31 FKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKV---------PDGPLTSRLQHLKEGD------ELMVSRK 93 (257)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEECSC
T ss_pred cCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEe---------CCCcchhHHHhCCCCC------EEEEecC
Confidence 356888865544 235799999999863 6788776532 3589999999887765 35555 4
Q ss_pred eeCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHH-HHHH-----c-
Q 005624 525 RQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S- 596 (687)
Q Consensus 525 ~~~~F~lp~~~-~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~-~~~~-----~- 596 (687)
+.|.|.++..+ ..|++|||+|||||||+++++++...+. ..+++|+||+|+.+ |++|.+||+ ++.+ +
T Consensus 94 p~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~~ 168 (257)
T 2qdx_A 94 PTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER----YEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGDQ 168 (257)
T ss_dssp CBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH----CSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHH
T ss_pred CCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC----CCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhcc
Confidence 56788887543 6899999999999999999998765432 26899999999996 999999999 7765 2
Q ss_pred -CCCcEEEEEEecCCC-Cccccchhhhcch-HHHHhc--c-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 597 -GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 597 -g~~~~l~~afSr~~~-~k~yVq~~l~e~~-~~v~~~--i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
...+++++++||+.. .++||++.+.+.. .+...+ + ..++.+|+||| ++|+++|.+.|.+
T Consensus 169 ~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 233 (257)
T 2qdx_A 169 VKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDS 233 (257)
T ss_dssp HHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHH
T ss_pred CCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHH
Confidence 134478889998743 4789998876542 111111 2 25789999999 8999999988864
No 36
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.87 E-value=2.6e-22 Score=207.64 Aligned_cols=170 Identities=22% Similarity=0.254 Sum_probs=130.8
Q ss_pred ChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.|..+.
T Consensus 35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP~ 98 (262)
T 1ep3_B 35 LPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGPL 98 (262)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEe---------cCCchHHHHhcCCCCC------EEEEEccc
Confidence 467887655553 67899999998863 47888877532 2588999999887765 46777777
Q ss_pred CC-cccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 527 SN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 527 ~~-F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
|+ |.++.+ ...|++|||+|||||||+++++++...+ .+++||||+|+++ |++|.+||+++... ++++
T Consensus 99 G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~~ 167 (262)
T 1ep3_B 99 GNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLKI 167 (262)
T ss_dssp SBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEE
T ss_pred CCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEEE
Confidence 77 998865 4689999999999999999999987642 5799999999997 99999999886532 4444
Q ss_pred EEecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 605 AFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 605 afSr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+ ++++. .++||++.+.+. +.+++.+|+||| ++|+++|++ |.+
T Consensus 168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 4 44432 467888865442 344789999999 899999988 753
No 37
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.85 E-value=1.6e-21 Score=183.60 Aligned_cols=141 Identities=25% Similarity=0.285 Sum_probs=121.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccC-CCeEEEEeeCCCCCC--CCchHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK-ENIVFFFLATYGDGE--PTDNAAR 181 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~-~~~vi~~~sTyG~G~--~pdna~~ 181 (687)
|+++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+++.+ ++.+ ++.+||++||||.|. +|++++.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEAG------GLFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCST------TTTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcC--CeeEEEehhhCCHH------HhcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 57999999999999999999999998765 45788898887643 4677 999999999999999 9999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCC-cHHhHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 258 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~-~e~~f~~W~~~l~~ 258 (687)
|++++... .+++++++|||+||+.|.+||.+.+.+++.|+.+|++.+.+....|.... ..+.+.+|.++|++
T Consensus 73 fl~~l~~~-----~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 73 LFDSLEET-----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp HHHTGGGS-----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----ccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHh
Confidence 99999742 48899999999999999889999999999999999999887666554322 56789999988764
No 38
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.84 E-value=9.3e-22 Score=192.39 Aligned_cols=146 Identities=22% Similarity=0.393 Sum_probs=121.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-------
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT------- 176 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p------- 176 (687)
|++++|+|+|+||||+.+|+.|++.+... ..++++++++++. .++.+++++||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADV------ADFMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCH------HHHHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCH------HHHhhCCeEEEEEeeCCCCCCCccccccc
Confidence 57899999999999999999999988643 2356777777653 3577899999999999999999
Q ss_pred -chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc-----------------
Q 005624 177 -DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------- 236 (687)
Q Consensus 177 -dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~----------------- 236 (687)
++++.|+++|.. ..|++++++|||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~~f~~~l~~-----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~ 146 (182)
T 2wc1_A 72 SESWEEFLPRIAD-----QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGE 146 (182)
T ss_dssp SCCHHHHGGGGTT-----CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTE
T ss_pred hhHHHHHHHHhhh-----ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCc
Confidence 999999988864 25889999999999998 8 5899999999999999999988763
Q ss_pred --ccccC-C-C--CcHHhHHHHHHHHHHHHHhh
Q 005624 237 --GLGDD-D-Q--CIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 237 --g~gD~-~-~--~~e~~f~~W~~~l~~~L~~~ 263 (687)
|++.+ + + ..+++++.|.++||++|...
T Consensus 147 ~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 147 FLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp ESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 65433 2 2 25888999999999988654
No 39
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.84 E-value=2.7e-21 Score=188.74 Aligned_cols=143 Identities=22% Similarity=0.380 Sum_probs=118.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC--------
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-------- 176 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-------- 176 (687)
++++|+|+|+||||+.+|+.|++.+.. + ..++++++++.+. .++..++.+||++||||.|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~--~~v~~~~~~~~~~------~~l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-E--TMSDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-T--TBCCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-C--CceEEEEhhhCCH------HHHhcCCEEEEEeccCCCCcCCcccccccc
Confidence 479999999999999999999998854 2 3356778777653 3577899999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc------------------
Q 005624 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------ 236 (687)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~------------------ 236 (687)
+++..|+++|... .|++++++|||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~fl~~l~~~-----~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f 146 (179)
T 1yob_A 72 ESWEEFLPKIEGL-----DFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKF 146 (179)
T ss_dssp CCHHHHHHHHTTC-----CCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSB
T ss_pred hHHHHHHHHhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCce
Confidence 9999999999642 5889999999999998 8 5799999999999999999988663
Q ss_pred -cc-ccCC---CCcHHhHHHHHHHHHHHHH
Q 005624 237 -GL-GDDD---QCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 237 -g~-gD~~---~~~e~~f~~W~~~l~~~L~ 261 (687)
|+ .|.+ ...++++++|.+++++.|.
T Consensus 147 ~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 147 VGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 44 2322 2468899999999987664
No 40
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.83 E-value=1.4e-20 Score=182.58 Aligned_cols=140 Identities=27% Similarity=0.429 Sum_probs=116.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-CCcchhHHHhccCCCeEEEEeeCCCCCCC----CchHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEP----TDNAA 180 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~----pdna~ 180 (687)
+++|+|+|+||||+.+|+.|++.+... .+++++++++ +. .++.+++.+||++||||+|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCCh------hHHccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 489999999999999999999999764 3467778776 43 357789999999999999999 99999
Q ss_pred HHH-HHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc-------------------cc
Q 005624 181 RFY-KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-------------------GL 238 (687)
Q Consensus 181 ~F~-~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~ 238 (687)
.|+ ++|... .|++++++|||+||+. | ++||.+++.+++.|+++|++.+.+. |+
T Consensus 71 ~fl~~~l~~~-----~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l 145 (173)
T 2fcr_A 71 EFLYDKLPEV-----DMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGL 145 (173)
T ss_dssp HHHHHTGGGC-----CCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSE
T ss_pred HHHHhhcccc-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeee
Confidence 999 887642 5889999999999999 8 6999999999999999999987652 22
Q ss_pred --ccC--CCCcHHhHHHHHHHHHHHH
Q 005624 239 --GDD--DQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 239 --gD~--~~~~e~~f~~W~~~l~~~L 260 (687)
+.+ +...+++++.|.+++++.|
T Consensus 146 ~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 146 PLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2246888999999998776
No 41
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.83 E-value=5.9e-21 Score=203.37 Aligned_cols=173 Identities=15% Similarity=0.195 Sum_probs=131.2
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCc-cchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~-~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. ...|. +|+||+ ++.+|+ .+.|..+.
T Consensus 39 ~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~---------~~~G~g~S~~L~~~l~~Gd------~v~v~gP~ 102 (321)
T 2pia_A 39 FEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKR---------DSNGRGGSISFIDDTSEGD------AVEVSLPR 102 (321)
T ss_dssp CCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC------EEEECCCB
T ss_pred CCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEE---------ecCCcchhHHHHhcCCCCC------EEEEeCCc
Confidence 357888866556667899999999863 4678887752 23577 899999 677665 45666667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+ ..|++|||+|||||||++|++++...+ . .+++||||+|+++ |++|.+||+++. .+. ++.+.+
T Consensus 103 g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~----~-~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~~ 172 (321)
T 2pia_A 103 NEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG----L-RSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIHH 172 (321)
T ss_dssp CCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC----S-SEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEEE
T ss_pred cccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC----C-CcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEEE
Confidence 88998765 678999999999999999999987643 1 5799999999997 999999999885 222 355566
Q ss_pred ecCCC-CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~-~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++.. .+.++++.+.+ ...+..+|+||| ++|+++|++.|.+
T Consensus 173 ~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 173 DHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp CTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred CCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 76532 33445444332 235789999999 8999999998876
No 42
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.83 E-value=7.8e-21 Score=184.76 Aligned_cols=143 Identities=26% Similarity=0.392 Sum_probs=119.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|+||||+++|+.|++.+... .+++.++.++.. .++.+++++||++||||.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCCh------hHhhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999653 367888877653 357789999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc--------------------cc-cc-
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--------------------GL-GD- 240 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~--------------------g~-gD- 240 (687)
+|... .|++++++|||+||+. | ++||.+.+.+.+.|++.|++.+... |+ .|
T Consensus 71 ~l~~~-----~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~ 145 (175)
T 1ag9_A 71 TLEEI-----DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDE 145 (175)
T ss_dssp HHTTC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECT
T ss_pred hhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCC
Confidence 99742 4889999999999986 8 7999999999999999999987642 21 12
Q ss_pred CCC--CcHHhHHHHHHHHHHHHHh
Q 005624 241 DDQ--CIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 241 ~~~--~~e~~f~~W~~~l~~~L~~ 262 (687)
+++ ..++++.+|.++|++.|..
T Consensus 146 ~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 146 DRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcccccHHHHHHHHHHHHHHhhh
Confidence 122 2567899999999998864
No 43
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.82 E-value=5.1e-21 Score=183.88 Aligned_cols=137 Identities=26% Similarity=0.364 Sum_probs=112.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++++|+|+|+||||+++|+.|++.+ + . +++.++++++. .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g--~-~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---G--N-AEVVDVAKASK------EQFNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---C--S-EEEEEGGGCCH------HHHTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---C--C-cEEEecccCCH------hHHhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 57899999999999999999999998 2 3 67888887764 35778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------ccccC-
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GLGDD- 241 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~gD~- 241 (687)
++|... .|++++|+|||+||+. |. +||.+++.++++|++ ++++.+. ++..+
T Consensus 69 ~~l~~~-----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~ 141 (164)
T 2bmv_A 69 GTLEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDE 141 (164)
T ss_dssp TTCCTH-----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECT
T ss_pred HHHhhh-----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCC
Confidence 888642 4889999999999996 96 699999999999987 7776653 33222
Q ss_pred C---CCcHHhHHHHHHHHHHH
Q 005624 242 D---QCIEDDFSAWRELVWPE 259 (687)
Q Consensus 242 ~---~~~e~~f~~W~~~l~~~ 259 (687)
+ ...++++++|.+++++.
T Consensus 142 ~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 142 DNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTTT
T ss_pred CCccccCHHHHHHHHHHHHHh
Confidence 1 13578899999988654
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.81 E-value=5.4e-20 Score=177.30 Aligned_cols=142 Identities=22% Similarity=0.386 Sum_probs=119.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|+||||+++|+.|++.+... .++++++++++. .++.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~------~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCH------HHHhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 6899999999999999999999999653 368889988774 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------cc--ccC
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL--GDD 241 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~--gD~ 241 (687)
+|... .+++++++|||+|++. |. +||.+.+.+++.|.++|++.+.+. |+ +.+
T Consensus 72 ~l~~~-----~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 146 (169)
T 1obo_A 72 ELDDV-----DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhc-----CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCC
Confidence 98752 5889999999999984 86 799999999999999999987651 22 222
Q ss_pred --CCCcHHhHHHHHHHHHHHHH
Q 005624 242 --DQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L~ 261 (687)
+...+++++.|.+++++.|.
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 147 NQSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHhc
Confidence 22467889999999998773
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.80 E-value=7.5e-20 Score=176.30 Aligned_cols=142 Identities=22% Similarity=0.383 Sum_probs=118.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|+||||+.+|+.|++.+... ..++++++.+++. .++.+++.+||++|||+.|++|++++.|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCH------hHHhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 5799999999999999999999999653 2468889888764 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------cc-ccC-
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL-GDD- 241 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~-gD~- 241 (687)
+|... .++++++++||+||+. |. +||.+.+.+++.|.++|++.+... |+ .|.
T Consensus 72 ~l~~~-----~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~ 146 (169)
T 1czn_A 72 DLDSV-----NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGS-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhh-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCC
Confidence 98642 5889999999999996 85 899999999999999999987631 22 122
Q ss_pred --CCCcHHhHHHHHHHHHHHH
Q 005624 242 --DQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L 260 (687)
+...++++.+|.+++++.|
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHh
Confidence 2346788999999998866
No 46
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.73 E-value=1.8e-17 Score=154.09 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=106.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCc-hHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pd-na~~F~~~ 185 (687)
|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEEhhhCCH------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 579999999999999999999998875 4578999988874 45788999999999999999897 99999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELV 256 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l 256 (687)
|... |+++++++||+++..| |.+.+.++++|+++|++.+.+....+. +... +...+|.++|
T Consensus 73 l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 73 ISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp HGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHH
T ss_pred HHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHH
Confidence 9742 7899999999877654 788999999999999998876443332 2222 4444555443
No 47
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.67 E-value=3e-17 Score=149.25 Aligned_cols=116 Identities=15% Similarity=0.177 Sum_probs=85.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L 186 (687)
++|+|+|+|||||++|++|+ +. + + ++++ +.+ .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~----~---~i~~---------~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A----V---QIGE---------DLV-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E----E---ECCT---------TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C----C---CcCc---------ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 2 2 2322 123 478999999999999999999999854
Q ss_pred HhhcCCCCCcCCceEEEEeccCCchHH-HHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHH
Q 005624 187 TEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 187 ~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (687)
+++++|+|||+||+.|.+ ||.+++.++++|. ......+. +..+....+.+.+|.++++
T Consensus 59 ---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~~~~~~-~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 ---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPIVSKFE-LSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCEEEEEE-TTCCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---CccEEEEe-cCCCHHHHHHHHHHHHHhc
Confidence 457899999999999976 9999999999874 33222221 2222222455788988775
No 48
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.65 E-value=2.6e-16 Score=150.76 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=108.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+.+.++ ...++.+++.+||++|||| |.+|+ ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTG--VAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTT--CCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 57999999999999999999999998765 457889998876532 3345678999999999996 88775 88998
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHHHHHh
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~~ 262 (687)
.|... .++++++++||.+ .++|.+.+.+++.|+++|++.+.+...... +....+...+|.+.+...|.+
T Consensus 74 ~l~~~-----~l~gk~v~~fgs~----g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 74 TIFAA-----AHNKQAIGLFDSY----GGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp HHHHH-----CCTTSEEEEECCC----CSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-----hhCCCEEEEEEcC----CCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88753 3789999999964 445788999999999999998866433322 222334566777777666653
No 49
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.63 E-value=4.5e-16 Score=148.90 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=111.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-CCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.++|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+. +.+ +...++..++.+||++|||+ |++| +..|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~~d~ii~Gspty~-g~~p--~~~~ 76 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTG--VGVDVVDLGAAVDLQ--ELRELVGRCTGLVIGMSPAA-SAAS--IQGA 76 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHH--HHHHHHHTEEEEEEECCBTT-SHHH--HHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCC--CeEEEEECcCcCCHH--HHHHHHHhCCEEEEEcCcCC-CCcc--HHHH
Confidence 468999999999999999999999998765 46788999877 543 23345778999999999996 8877 4889
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHHHH
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L 260 (687)
++.|... .++++++++||.+ .++|.+.+.+.+.|+++|++.+.+...... +....+...+|.+.|.+.+
T Consensus 77 l~~l~~~-----~~~~k~va~fgs~----g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~ 147 (159)
T 3fni_A 77 LSTILGS-----VNEKQAVGIFETG----GGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWV 147 (159)
T ss_dssp HHHHHHH-----CCTTSEEEEECCS----SSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCEEEEEEcC----CCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9888754 3789999999954 567888999999999999998876444332 2223345667877777666
Q ss_pred Hh
Q 005624 261 DN 262 (687)
Q Consensus 261 ~~ 262 (687)
.+
T Consensus 148 ~~ 149 (159)
T 3fni_A 148 TR 149 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 50
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.62 E-value=2.2e-16 Score=162.28 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=113.0
Q ss_pred ChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+|. ...|+|||+|.+. +++.|.+.++ ...|.+|+||+++.+|+ .+.|..+
T Consensus 40 ~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~gP 102 (252)
T 2gpj_A 40 QESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGGP 102 (252)
T ss_dssp CTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEecC
Confidence 468888765663 4569999999764 5666655321 11388999999887776 4677778
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.+ ..+++|||+||||||+++++++... ..+..+|+++|+.+ |.++. + .....+++.+
T Consensus 103 ~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~-------~~~~~~~~~~~~~~-d~~~l---~----~~~~~~v~~~ 166 (252)
T 2gpj_A 103 GLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN-------NAVGYAVIEVLSEA-DIQPL---V----HPEHVELHWV 166 (252)
T ss_dssp ECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT-------TCEEEEEEEESSGG-GCCCC---C----CCTEEEEEEE
T ss_pred CCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC-------CCcEEEEEEECCHH-Hhhcc---c----CCCCcEEEEE
Confidence 889998754 4789999999999999999998632 14678899999975 65432 1 1223356666
Q ss_pred EecCCCC-ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHH
Q 005624 606 FSREGPT-KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655 (687)
Q Consensus 606 fSr~~~~-k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~ 655 (687)
++.+... ...+.+.+.+. .+ ..+.++|+||| ++|+++|++.|.
T Consensus 167 ~~~~~~~~g~~~~~~l~~~------~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 167 INPEADPEGRPLVERIAQL------PWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp ECSSCCTTCHHHHHHHTTS------CCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred eCCCCCcccHHHHHHHHhc------cCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 6543221 12223222211 01 24578999999 899999999886
No 51
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.61 E-value=2.9e-16 Score=146.70 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=86.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|++.|+|+|+||||+.+|++|++.+ .+++.+ .+..++.+|+++||||+|++|+++.+|++
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~~----------~~~i~~----------~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~ 68 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQQ----------IRKVDE----------MDHVDTPFVLVTYTTNFGQVPASTQSFLE 68 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCSE----------EEETTS----------CSCCCSCEEEEECCBGGGBCCHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhcccc----------ceEecc----------ccccCCCEEEEEcCcCCCcCcHHHHHHHH
Confidence 5679999999999999999986420 123322 13445678999999999999999998884
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
. ..++.|+|||+||++| +.||.+++.+++++ |...+...- .+-.....+.+.+|.+++|.
T Consensus 69 ~----------~~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~e-l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 69 K----------YAHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKFE-LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp H----------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEEE-TTCCHHHHHHHHHHHHHHHH
T ss_pred h----------CCCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceEE-EcCCHHHHHHHHHHHHHHHH
Confidence 2 1347899999999999 78999999998776 443322211 11111234568899988875
No 52
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.61 E-value=3.9e-15 Score=137.52 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=105.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCc-hHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pd-na~~F~~~ 185 (687)
++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+++. .++.+++.+||++|||+.|.+|+ +++.|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCC--CeEEEEEcccCCH------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 789999999999999999999998765 4578889988764 35778999999999999898888 49999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (687)
+.. .++++++++||.+... ||.+.+.+++.|..+|++.+ +....+...+..+.+.+|.+++.
T Consensus 74 l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l~ 135 (137)
T 2fz5_A 74 LAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAAA 135 (137)
T ss_dssp HGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHHH
T ss_pred hhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHHh
Confidence 963 4889999999964322 68899999999999999987 32222211111566777876653
No 53
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=149.03 Aligned_cols=131 Identities=12% Similarity=0.242 Sum_probs=88.3
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc---CCCCCcEEEEEeeccCCcccc-cHHHHHHHHHc----
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS---- 596 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~---~~~~~~~~LffG~R~~~~D~l-y~del~~~~~~---- 596 (687)
+.|.|.++.....|+||||+|||||||+++++++...... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 6 P~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~~~ 84 (186)
T 3a1f_A 6 PFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQER 84 (186)
T ss_dssp TTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHhhc
Confidence 3566765434467899999999999999999998765321 11247899999999997 887 99999999875
Q ss_pred --CCCcEEEEEEecCCC---Cccccch-----hh----------hcchHHHHh----cc-cCCcEEEEECCchhhHHHHH
Q 005624 597 --GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSDIWN----ML-SEGAYLYVCGDAKSMARDVH 651 (687)
Q Consensus 597 --g~~~~l~~afSr~~~---~k~yVq~-----~l----------~e~~~~v~~----~i-~~~~~iYvCG~a~~M~~~V~ 651 (687)
...+++++.+|++.. .+.|+|. .+ +-+.+.+.+ .+ ..+..||+||| ++|+++|+
T Consensus 85 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~v~ 163 (186)
T 3a1f_A 85 NNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAETLS 163 (186)
T ss_dssp TCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHHHH
T ss_pred cCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHHHH
Confidence 235578889998532 1223331 00 111122222 11 13678999999 89999999
Q ss_pred HHHHHH
Q 005624 652 RTLHTI 657 (687)
Q Consensus 652 ~~L~~i 657 (687)
++|.+.
T Consensus 164 ~~l~~~ 169 (186)
T 3a1f_A 164 KQSISN 169 (186)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988764
No 54
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.53 E-value=7.2e-15 Score=140.32 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=81.1
Q ss_pred eEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCc
Q 005624 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 600 (687)
Q Consensus 521 ~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~ 600 (687)
.|..+.|+|.... ..+|++|||+||||||+++++++....+ .+++|+ |+|+++ |.+|.+||+++..+ .
T Consensus 9 ~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~---~ 76 (158)
T 3lrx_A 9 NVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 76 (158)
T ss_dssp ---CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---E
T ss_pred EEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---e
Confidence 4555667755433 4689999999999999999999876532 478999 999997 99999999988642 1
Q ss_pred EEEEEEecCC------C--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 601 QLIVAFSREG------P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 601 ~l~~afSr~~------~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+..++++.. + .+++|++.+.+. +.+ .+...||+||| ++|+++|.+.|.+.
T Consensus 77 ~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~---l~~--~~~~~vy~CGP-~~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 77 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL---LES--EDWDLVFMVGP-VGDQKQVFEVVKEY 135 (158)
T ss_dssp EECCBCCCTTSCHHHHHHHHHHHHHHHHHHH---HHH--SCCSEEEEESC-HHHHHHHHHHHGGG
T ss_pred EEEEeeccccccCCCCCCCCcccccHHHHHh---hcc--CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 2222233321 1 245666544321 111 14568999999 99999999887653
No 55
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.53 E-value=1.2e-14 Score=136.43 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=81.8
Q ss_pred EEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005624 522 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 601 (687)
Q Consensus 522 v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~ 601 (687)
|..+.|+|....+ .+|++|||+|+||||+++++++....+ .++.|+ |+|+++ |.+|.+||+++.++ ..
T Consensus 5 v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~~ 72 (142)
T 3lyu_A 5 VAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---HI 72 (142)
T ss_dssp --CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---EE
T ss_pred eeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---eE
Confidence 4445677665433 689999999999999999999876532 468999 999997 99999999987542 12
Q ss_pred EEEEEecCCC--------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 602 LIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 602 l~~afSr~~~--------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+..++++... .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 73 VEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEY 130 (142)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHH
T ss_pred EEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 3333444211 245666544332 111 24568999999 99999998877754
No 56
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.38 E-value=1e-12 Score=122.94 Aligned_cols=98 Identities=18% Similarity=0.417 Sum_probs=74.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCC----CCCCCchH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYG----DGEPTDNA 179 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG----~G~~pdna 179 (687)
+|..+|+|+|.||||++|+++|... . .+ +++.+- +.+..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~~-------~-~~-I~~~~~--------~~~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGLP-------A-VR-IPLNER--------ERIQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCSC-------C-EE-CCSSTT--------CCCCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCCc-------c-cc-cccccC--------cccccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 4556899999999999999988421 1 12 233211 12345678999999999 59999999
Q ss_pred HHHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHH
Q 005624 180 ARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILA 226 (687)
Q Consensus 180 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~ 226 (687)
.+|++.+.+ .++.++|+|.||++| +.||.+++.+.+.+.
T Consensus 83 ~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 999876643 346799999999998 999999999999874
No 57
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.31 E-value=7.9e-12 Score=136.23 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=112.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
.++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.+ +...++.+++.+||++||||.|.+| .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHS--QIMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 589999999999999999999999998754 45788888876542 2334578999999999999766655 799999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~ 261 (687)
+++... .++++++++||. |.++|.+.+.+.+.|..+|++.+.+....+. +....+.+.+|.+++...+.
T Consensus 327 ~~l~~~-----~l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 397 (402)
T 1e5d_A 327 QYIKGL-----RPQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK 397 (402)
T ss_dssp HHHHHT-----CCCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhc-----ccCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 998753 478999999995 5567899999999999999998864222221 22233456778877776665
Q ss_pred hh
Q 005624 262 NL 263 (687)
Q Consensus 262 ~~ 263 (687)
+.
T Consensus 398 ~~ 399 (402)
T 1e5d_A 398 AK 399 (402)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 58
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.31 E-value=1.6e-11 Score=120.12 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=110.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
|++|+|+|+|.||||+.+|+.|++.+.+ .+ ..++++|+.+.+. +++.+++.+||++||| .|.+|..++.|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g--~~v~~~~l~~~~~------~~l~~aD~ii~gsP~y-~g~~~~~lk~f 74 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEG--TEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRF 74 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTT--EEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCC--CeEEEEEhhhCCH------HHHHhCCEEEEEeCcc-CCcCCHHHHHH
Confidence 6799999999999999999999999987 54 5678899988763 4577899999999999 89999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccc-----------cc---cccCC-CCcH
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-----------VG---LGDDD-QCIE 246 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~-----------~g---~gD~~-~~~e 246 (687)
++++.... ...++++++++||. |+.. ..+....+.+.+.|..+|...+.. .| .+.-+ ....
T Consensus 75 ld~~~~~~--~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 151 (188)
T 2ark_A 75 FDDVLGDL--WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEK 151 (188)
T ss_dssp HHHTGGGT--TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHH
T ss_pred HHHHhhhh--HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHH
Confidence 99987410 12488999999999 5543 224566677888888888864421 01 11111 1223
Q ss_pred HhHHHHHHHHHHHHHhhh
Q 005624 247 DDFSAWRELVWPELDNLL 264 (687)
Q Consensus 247 ~~f~~W~~~l~~~L~~~~ 264 (687)
+....|.+.+...+.++.
T Consensus 152 ~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 152 EACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456678888877776654
No 59
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.31 E-value=1.4e-11 Score=121.16 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=100.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcch-------------hHHHhccCCCeEEEEeeC
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~vi~~~sT 169 (687)
.|++|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.+...... ...+++.+++.+||++||
T Consensus 4 ~M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 81 (200)
T 2a5l_A 4 SSPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT 81 (200)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEEC
T ss_pred CcceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcCh
Confidence 3679999999999999999999999998765 5678888877411000 013567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
| .|.+|..++.|++++.... ....++++++++|+.+...+..++.+...+.+.|..+|++.+.+
T Consensus 82 y-~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 82 R-FGNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp B-TTBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred h-ccCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 9 6899999999999886421 01247899999999987776556778899999999999886643
No 60
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.30 E-value=4.7e-12 Score=137.80 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=98.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
.++++|+|+|+||||+++|+.+++.+.+.+ ..++++++.+.+.. +....+..++.+||++|||+.|.+| .++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRN--DVIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHH--HHHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 578999999999999999999999998765 45788888776532 2334567899999999999766666 599999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccc
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~ 236 (687)
+++... .++++++++||. |.++|.+.+.+++.|..+|++.+.+.
T Consensus 326 ~~l~~~-----~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~ 369 (398)
T 1ycg_A 326 DDLVGL-----RPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEP 369 (398)
T ss_dssp HHHHHH-----CCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSS
T ss_pred HHHhcc-----ccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCc
Confidence 999753 378999999995 56689999999999999999988653
No 61
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.29 E-value=6.4e-12 Score=137.77 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=97.4
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCe-eEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAI-FKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~-v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
....+|+|+|+|++||||++|+.|++.+.++|.... +++.|++..+. .+...++.+++.+||++||| +|++++.++
T Consensus 263 ~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~--s~i~~~i~~~~~ivlGspT~-~~~~~p~~~ 339 (410)
T 4dik_A 263 PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAI--SEILKDIPDSEALIFGVSTY-EAEIHPLMR 339 (410)
T ss_dssp CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCH--HHHHHHSTTCSEEEEEECCT-TSSSCHHHH
T ss_pred ccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCH--HHHHHHHHhCCeEEEEeCCc-CCcCCHHHH
Confidence 345689999999999999999999999998873221 13344444332 33456788899999999999 578888999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
.|+..+... .+++++.++|| +|.|-+.+.+.+.++|+++|++.+-+
T Consensus 340 ~~l~~l~~~-----~~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 340 FTLLEIIDK-----ANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHHH-----CCCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHHhc-----ccCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 999988765 37899999999 56777889999999999999886544
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.23 E-value=6.2e-11 Score=129.86 Aligned_cols=146 Identities=14% Similarity=0.003 Sum_probs=110.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+++|+|+|+|.||||+++|+.|++.+.+.+ ..++++++.+.+.. ...+++.+++.+||++||| .|.+|..++.|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g--~~v~~~~l~~~~~~--~~~~~l~~~D~iiigsP~y-~~~~~~~~k~f 329 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTG--CETVLLEMTSSDIT--KVALHTYDSGAVAFASPTL-NNTMMPSVAAA 329 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGCCHH--HHHHHHHTCSEEEEECCCB-TTBCCHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEEcCcCCHH--HHHHHHHhCCEEEEEcCcc-CcCchHHHHHH
Confidence 4689999999999999999999999998754 45788888876642 2234688999999999999 56677779999
Q ss_pred HHHHHhhcCCCCCc-CCceEEEEeccCCchHHHHHHHHHHHHHHHH-cCCcccccc-c--cccCCCCcHHhHHHHHHHHH
Q 005624 183 YKWFTEQKEGGEWL-QKLKYGVFGLGNRQYEHFNKIAKVVDEILAN-QGAKRLVPV-G--LGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 183 ~~~L~~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~-lGa~~l~~~-g--~gD~~~~~e~~f~~W~~~l~ 257 (687)
++++... .+ +++++++||.|+.. +.+.+.+.+.|.. +|++.+.+. . .+.-+....+...+|.+++.
T Consensus 330 ld~l~~~-----~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 400 (414)
T 2q9u_A 330 LNYVRGL-----TLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLG 400 (414)
T ss_dssp HHHHHHH-----TTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHH
Confidence 9999753 36 89999999987654 5567899999999 999977643 1 12212222345667777666
Q ss_pred HHHHh
Q 005624 258 PELDN 262 (687)
Q Consensus 258 ~~L~~ 262 (687)
..+.+
T Consensus 401 ~~~~~ 405 (414)
T 2q9u_A 401 KRAIA 405 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 63
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.19 E-value=1.1e-10 Score=114.35 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=96.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcc--------------hhHHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEE--------------DEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~--------------~~~~~~l~~~~~vi~~~s 168 (687)
||+|+|+|+|.+|||+.+|+.|++.+.+ .+ ..++++|+.+..... .+ .+++..++.+||++|
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDG--AEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTP 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTT--CEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCC--CEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeC
Confidence 5789999999999999999999999987 54 567888887642110 01 356788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
|| .|.+|..++.|++++.... ....++++++++|+.+... .....+.+.+...|..+|+..+.
T Consensus 78 ~y-~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 78 TR-FGNMSGQMRTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp EE-TTEECHHHHHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hh-cCCchHHHHHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 99 8999999999999876421 0124889999999987655 34456778888889888987554
No 64
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.19 E-value=5.8e-11 Score=113.58 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=89.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc--------------------h---hHHHhccCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (687)
+++++|+|.|.||||+++|+.|++.+.... +++.+...|..++ . ....++..+
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~----~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL----YEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe----EEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 578999999999999999999999885321 2233333332100 0 001347789
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
+.+||++||| .|.+|..+..|++.+ .++++++++|+. |++.+. .+.+.+.+.|. |++-+-.+. .
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~g---~~~~~l~~~l~--~~~~~~g~~-~ 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGIG---NCEKNLHKAYP--DIVWKDGKL-L 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCSH---HHHHHHHHHCT--TSEECCCEE-C
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCcc---HHHHHHHHHcC--CCEeecceE-E
Confidence 9999999999 699999888886543 378999999987 555553 45566766664 555332111 1
Q ss_pred cCCCCcHHhHHHHHHHH
Q 005624 240 DDDQCIEDDFSAWRELV 256 (687)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (687)
.....++++.+|.+++
T Consensus 145 -~g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 -NGQITRDLVTEWFEKI 160 (162)
T ss_dssp -CSCCCHHHHHHHHHHT
T ss_pred -eCCCCHHHHHHHHHHh
Confidence 1123578999998764
No 65
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.19 E-value=4.4e-11 Score=130.40 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=110.0
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
...++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+++.+ ....++.+++.+||++||| .|.+|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~l~~~d~iiigsP~y-~~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEG--VDVRVYCLHEDDRS--EIVKDILESGAIALGAPTI-YDEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCEE-TTEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECccc-cccchHHHHH
Confidence 35689999999999999999999999998754 56788999877642 2345688999999999999 5666778999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc-ccCCCCcHHhHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL-GDDDQCIEDDFSAWRELVWPE 259 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~-gD~~~~~e~~f~~W~~~l~~~ 259 (687)
|++++...... . |+++++++||+|+.. +.+.+.+.+.|..+|++.+.++.. +..+....+...+|.+++...
T Consensus 329 ~ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 329 LLMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 99999753211 1 589999999987654 567789999999999998766221 111222334556666665443
No 66
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.15 E-value=1.6e-10 Score=111.52 Aligned_cols=135 Identities=14% Similarity=0.190 Sum_probs=90.2
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcch-----------------------hHHHhc
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-----------------------EYEEKL 157 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-----------------------~~~~~l 157 (687)
+..+|+++|+|.|.||||+.+|+.|++.+... .+++.+...|...+- ....++
T Consensus 10 ~~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d----~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l 85 (171)
T 4ici_A 10 KHSNSKILVAYFSATGTTARAAEKLGAAVGGD----LYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENI 85 (171)
T ss_dssp ---CCCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTG
T ss_pred ccCCCCEEEEEECCCChHHHHHHHHHHHhCCC----eEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccH
Confidence 35578999999999999999999999998532 123333333321000 001357
Q ss_pred cCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccC-CchHHHHHHHHHHHHHHHHcCCcccccc
Q 005624 158 KKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGN-RQYEHFNKIAKVVDEILANQGAKRLVPV 236 (687)
Q Consensus 158 ~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGd-s~Y~~f~~~ak~ld~~L~~lGa~~l~~~ 236 (687)
..++.+||++||| .|.+|..+..|++.+ .++++++++|+.+. +.+ ..+.+.+.+.|. |++- .+-
T Consensus 86 ~~yD~iilg~Pvy-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~a~~~l~~~l~--~~~~-~~g 150 (171)
T 4ici_A 86 GTYDVVFIGYPIW-WDLAPRIINTFIEGH--------SLKGKTVVPFATSGGSSI---GNSATVLKKTYP--DLNW-KEG 150 (171)
T ss_dssp GGCSEEEEEEECB-TTBCCHHHHHHHHHS--------CCTTSEEEEEEECSSCCS---HHHHHHHHHHST--TSEE-CCC
T ss_pred hHCCEEEEecccc-cCCchHHHHHHHHHc--------CCCcCEEEEEEecCCCCc---chHHHHHHHHcC--CCee-ccC
Confidence 7899999999999 588999888887665 37899999999853 333 456677777764 4443 221
Q ss_pred ccccCCCCcHHhHHHHHHHH
Q 005624 237 GLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 237 g~gD~~~~~e~~f~~W~~~l 256 (687)
.... ...++++..|.+++
T Consensus 151 ~~~~--~~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 151 RLLN--RTDEKAIRAWLDVI 168 (171)
T ss_dssp EECS--SCCHHHHHHHHHHH
T ss_pred eEec--CCCHHHHHHHHHHh
Confidence 1111 13578899998775
No 67
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.15 E-value=2.2e-10 Score=112.55 Aligned_cols=126 Identities=12% Similarity=0.008 Sum_probs=97.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-------------C--CcchhHHHhccCCCeEEEEe
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-------------A--DEEDEYEEKLKKENIVFFFL 167 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-------------~--~~~~~~~~~l~~~~~vi~~~ 167 (687)
.||+|+|+|+| +|||+.+|+.+++.+.+.+ ..++++|+.+. + .+..+ .+++..++.+||++
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gs 78 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAG--AEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGS 78 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHS--CEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEE
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCC--CEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEEC
Confidence 36799999999 9999999999999998765 56788888775 0 00011 35678899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
||| .|.+|..++.|++++...- ....++++++++|+.+...+.....+...+.+.|..+|+..+.
T Consensus 79 P~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 79 PTR-YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp ECB-TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred Ccc-ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 999 6999999999999875321 0124889999999987665433356778888999999987654
No 68
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.15 E-value=1.7e-10 Score=113.32 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=94.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-CCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
.+++|+|+|+|.||||+.+|+.|++.+.+. .+++.++ +..+ ...+++.+++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~-------~~~v~~~~~~~~-~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEAT-------LHAIDAEGNLSE-DGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE-------EEECCTTSCCCH-HHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhc-------ceEeeecCCCCH-hHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 468899999999999999999999999753 2344443 1111 1235688899999999999 6999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
|++++...- ....++++++++|+.+...+..+..+...+...|..+|...+
T Consensus 76 fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 76 FADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 999886310 012488999999999987776677888999999999988743
No 69
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.12 E-value=1.4e-10 Score=115.37 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=100.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC--------------------CCcchhHHHhccCCCe
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY--------------------ADEEDEYEEKLKKENI 162 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------------~~~~~~~~~~l~~~~~ 162 (687)
.||+|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.+. +.. ....+++..++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVP-EATPADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSC-BCCHHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC--CEEEEEeccccccchhhhcccccccccccccchh-HHHHHHHHHCCE
Confidence 4689999999999999999999999998764 56788888775 210 112456788999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+||++|+| .|.+|..++.|++++...- ....++++++++|+.+...+..+..+...+...|..+|+..+.+
T Consensus 82 ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 82 IVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99999999 6999999999999875321 01248899999999876665334677788899999999876543
No 70
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.03 E-value=3.7e-10 Score=111.30 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=95.7
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHH-HHhhcCCCeeEEecCCCCCC-----------cchhHHHhccCCCeEEEEeeC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADE-ARARYDKAIFKVVDIDDYAD-----------EEDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~-----------~~~~~~~~l~~~~~vi~~~sT 169 (687)
||+|+|+|||. +|+|+.+|+.+++. +.+.+ ..++++|+.++.. +-..+.+.+...+.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g--~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSD--SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS--EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCC--CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57999999997 89999999999999 88764 5678889887643 111233567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
| .|..|...+.|++|+.. ..++++++++|+.|... .+++.....+...|..+|++.+.
T Consensus 80 y-~~~~p~~lK~~ld~l~~-----~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILPQ-----FALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp B-TTBCCHHHHHHHTTSCT-----TTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred c-CCCCCHHHHHHHHhccc-----cccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 9 78899999999999853 25899999999997654 23332324688899999998664
No 71
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=98.97 E-value=4.8e-09 Score=102.84 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=115.0
Q ss_pred CceEEEEEecCc---chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------------------------chhH
Q 005624 104 KQKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (687)
Q Consensus 104 ~~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (687)
||+|+|+|||.+ |+|+.+|+.+++.+.+.++...++++|+.+++.. ...+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 579999999998 9999999999999998765566889998775421 0123
Q ss_pred HHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCchHH--HHHHHHHHHH
Q 005624 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQYEH--FNKIAKVVDE 223 (687)
Q Consensus 154 ~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~--f~~~ak~ld~ 223 (687)
.+.+...+.+||++|+| .|.+|...+.|++++..... +...++++++++|+.+...|.. |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 45688899999999999 88999999999999863100 0124889999999976655532 5556777888
Q ss_pred HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
.|..+|++.+..+.....+. .++..++|.++..+.+.++
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~ 198 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDSV 198 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHHH
Confidence 99999998764433322222 3455578877766655543
No 72
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=98.95 E-value=1.5e-09 Score=102.31 Aligned_cols=127 Identities=9% Similarity=0.158 Sum_probs=84.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCC-CCCCcc--------------------hhHHHhccCCCe
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID-DYADEE--------------------DEYEEKLKKENI 162 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~-~~~~~~--------------------~~~~~~l~~~~~ 162 (687)
+++++|+|.|.||||+++|+.|++.+.... .+++...+ .|+.+. .....++..++.
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~ 79 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE---LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDL 79 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE---EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC---EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCE
Confidence 468999999999999999999999884321 01211111 122100 001235678999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCC
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 242 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~ 242 (687)
+||++||| .|.+|..+..|++.+. .+.++.+++|+.|...+. .+.+.+.+.+. ++.-+ + |+.
T Consensus 80 iilG~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~g---~~~~~l~~~~~--~~~~~-~-g~~--- 141 (151)
T 3edo_A 80 ILIGSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNHK---AYVSHFNEWAD--GLNVI-G-VAR--- 141 (151)
T ss_dssp EEEEEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCHH---HHHHHHHHHTT--TSEEE-E-EEE---
T ss_pred EEEEccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCCC---cHHHHHHHHcC--CCeee-c-ccc---
Confidence 99999999 6999999999998764 367889999999987753 34566666653 44422 2 111
Q ss_pred CCcHHhHHHHH
Q 005624 243 QCIEDDFSAWR 253 (687)
Q Consensus 243 ~~~e~~f~~W~ 253 (687)
.+.++.+|.
T Consensus 142 --~~~~~~~w~ 150 (151)
T 3edo_A 142 --DDSEVDKWS 150 (151)
T ss_dssp --TTTTHHHHH
T ss_pred --cHHHHHHHh
Confidence 124688885
No 73
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=98.74 E-value=5.9e-08 Score=98.53 Aligned_cols=152 Identities=11% Similarity=0.108 Sum_probs=109.7
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHHHhh-cCCCeeEEecCCCCCC----------------------cchhHHHhcc
Q 005624 104 KQKVTIFFGTQT--GTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD----------------------EEDEYEEKLK 158 (687)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~----------------------~~~~~~~~l~ 158 (687)
||+|+|+|||.. |+|+.+|+.+++.+.+. + ..++++|+.+++. +-.+..+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH
Confidence 579999999986 99999999999999876 4 5678888876532 1122345678
Q ss_pred CCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005624 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (687)
Q Consensus 159 ~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~ 238 (687)
..+.+||++|+| .|.+|...+.|++++.... ....+.++++++|+.+... ....+...+...|..+|+..+.++..
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSI 154 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEE
Confidence 899999999999 8999999999999985321 2235889999999764322 11245677888898899987655433
Q ss_pred ccC-CCCcHHhHHHHHHHHHHHHH
Q 005624 239 GDD-DQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 239 gD~-~~~~e~~f~~W~~~l~~~L~ 261 (687)
.+. .....+.+.++.+.|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~la~~i~ 178 (242)
T 1sqs_A 155 TNSLKDIAEAQLMEATYKIEDVLE 178 (242)
T ss_dssp EGGGGGGHHHHHHHHHHHHHHHHT
T ss_pred eccCChHHHHHHHHHHHHHHHHHh
Confidence 221 12345567777777666554
No 74
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.73 E-value=4.8e-08 Score=95.56 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC------------cchhHHHhccCCCeEEEEee
Q 005624 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------EEDEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------~~~~~~~~l~~~~~vi~~~s 168 (687)
.+|+|+|+|||.. |+|+.+|+.+++.+. .+ ..++++|+.++.. +-....+++...+.+||++|
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP 81 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATP 81 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECC
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcc
Confidence 3478999999985 999999999999886 33 5678888877432 11123456888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
+| .|.+|...+.|++++..... ..++++++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 82 ~y-~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 82 EY-NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp EE-TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred cc-ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 99 78899999999999974211 3489999999998744432 235668888899889998765
No 75
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.71 E-value=8.6e-08 Score=93.42 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=94.6
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhc----CCCeeEEecCCCCCC----------------------c-chhHHH
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARY----DKAIFKVVDIDDYAD----------------------E-EDEYEE 155 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~----------------------~-~~~~~~ 155 (687)
|+|+|+|||.. |+|+.+|+.+++.+.+.+ ++..++++|+.+++. + ...+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 58999999998 999999999999998753 235678888765321 0 012346
Q ss_pred hccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 156 ~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
.+...+.+||++|+| .|.+|...+.|++++.. .++++++++|+.|...- ..+...+...|..+|++.+..
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcce
Confidence 788999999999999 78999999999988853 48899999999887532 346678888999999986543
No 76
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.68 E-value=5.2e-08 Score=93.74 Aligned_cols=115 Identities=10% Similarity=0.191 Sum_probs=87.0
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-----c--------chhHHHhccCCCeEEEEeeC
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E--------EDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~--------~~~~~~~l~~~~~vi~~~sT 169 (687)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++|+.+++. + -.++.+.+...+.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 57999999998 9999999999998753 3455544432 1 11233467889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
| .|.+|...+.|++|+... .++++++++|+. |... .+..+...+.+.|..+|+..+-
T Consensus 74 y-~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp S-SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEec
Confidence 9 999999999999998642 488999999984 4321 2356678899999999998553
No 77
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.58 E-value=3.5e-07 Score=90.32 Aligned_cols=157 Identities=9% Similarity=0.032 Sum_probs=108.1
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCC--CCCCcc---------------------------
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDID--DYADEE--------------------------- 150 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~~~~--------------------------- 150 (687)
||+|+|+|||.. |+|+.+|+.+.+.+++.++...++++|+. +.....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999987 99999999999999988755678889887 644210
Q ss_pred -----hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCchHHHHHH
Q 005624 151 -----DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQYEHFNKI 217 (687)
Q Consensus 151 -----~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y~~f~~~ 217 (687)
.++.+++...+.+||++|+| .|.+|...+.|++++.... .+...++++++.+|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 11234678889999999999 9999999999999986411 011247899999986533334210234
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 218 ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
...+...|.-+|.+.+-.+.....+. .++..++|.++....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 45667778889998665443332222 235567777665554443
No 78
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.49 E-value=1.3e-06 Score=89.01 Aligned_cols=128 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred ccCCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------chhHHHhccCCCeEEEEeeC
Q 005624 101 DDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------EDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 101 ~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------~~~~~~~l~~~~~vi~~~sT 169 (687)
...+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+.+...+.+||++|+
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC
Confidence 345789999999985 999999999999998754 56788999876521 12345678889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
| +|.+|...+.|++|+.........+++++.++++.+-.. ... .+...+...|..+|+..+
T Consensus 109 Y-n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 109 R-HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp S-SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred C-CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEe
Confidence 9 999999999999999642111135899999999984322 111 355788888888998855
No 79
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.46 E-value=1.1e-06 Score=84.61 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=85.9
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC------------------cchhHHHhccCCCe
Q 005624 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENI 162 (687)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~ 162 (687)
+||+|+|+|||.. |+|+.+|+.+++.+ .++++|+.+++. +..+..+++...+.
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 74 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCE
Confidence 3579999999964 99999999998755 235555554422 11223457889999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCC------CCcCCceEEEEeccCCchH-HHHHHHHHHHHHHHHcCCccccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGG------EWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~------~~l~~~~~aVFGlGds~Y~-~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+||++|+| .|.+|...+.|++++....... ..++++++++|+.+..... .+..+.+.+...|..+|.+.+..
T Consensus 75 ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 99999999 8999999999999886421100 1478999999988654321 23445678888888899886643
No 80
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.35 E-value=2.9e-06 Score=87.74 Aligned_cols=127 Identities=9% Similarity=-0.000 Sum_probs=97.0
Q ss_pred cCCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc----------chhHHHhccCCCeEEEEeeC
Q 005624 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~vi~~~sT 169 (687)
..+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+.+...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 45789999999986 999999999999998754 56888998876521 12234567888999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
| +|.+|...+.|++|+.........+++++.++++.+-.. ..+ .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999642111235899999999984322 112 345678888888898855
No 81
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.35 E-value=4.9e-06 Score=81.38 Aligned_cols=126 Identities=12% Similarity=0.153 Sum_probs=94.7
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------chhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~vi~~~sTy 170 (687)
|++|+|++||. .|+++.+|+.+.+.+. . +..++++|+.++..- -.++.+.+...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~--~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-D--RAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-T--SSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-C--CCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999886 3 356788888765321 123456788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcC-----CCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKE-----GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~-----~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
.|..|.-.+.|++|+..... ....|+|+++++++.+... .+..+...+...|..+|++.+-.
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 99999999999999975210 1135899999999886552 22334577888888899986543
No 82
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.32 E-value=1.6e-05 Score=79.31 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=111.6
Q ss_pred cCCceEEEEEecC------cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCC
Q 005624 102 DGKQKVTIFFGTQ------TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175 (687)
Q Consensus 102 ~~~~~v~I~YgSq------tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~ 175 (687)
..||+|+|++||. .+.+..+++.+.+.+.+.+ ..++++|+++ ..|-....+.+...+.+||++|.| .+..
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g--~ev~~~dL~~-~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESG--HQVKITTVDQ-GYDIESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTT--CCEEEEEGGG-CCCHHHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCC--CEEEEEECCC-ccCHHHHHHHHHhCCEEEEECChH-hccC
Confidence 4578999999997 3688999999999998765 4578888875 222233456788999999999999 9999
Q ss_pred CchHHHHHHHHHhhc-------------------CCCCCcCCceEEEEeccCCchHHHH-------H-----HHHHHHHH
Q 005624 176 TDNAARFYKWFTEQK-------------------EGGEWLQKLKYGVFGLGNRQYEHFN-------K-----IAKVVDEI 224 (687)
Q Consensus 176 pdna~~F~~~L~~~~-------------------~~~~~l~~~~~aVFGlGds~Y~~f~-------~-----~ak~ld~~ 224 (687)
|.-.+.|++++.... .+...|+|+++.|+-..+...+.|. . .-.-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 999999999885431 0123589999887765444433332 2 11224566
Q ss_pred HHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 225 L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
|.-+|.+.+-+....+... ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778998777766655433 4578888888877777665
No 83
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.31 E-value=7.4e-06 Score=81.20 Aligned_cols=158 Identities=10% Similarity=0.076 Sum_probs=108.7
Q ss_pred CceEEEEEecCcc---hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---------------c-------------chh
Q 005624 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------E-------------EDE 152 (687)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------~-------------~~~ 152 (687)
||+|+|++||..+ +|..+|+.+.+.+++.+++..++++|+.+.+. . ..+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6899999999765 69999999999998875446688888865431 0 112
Q ss_pred HHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc-------CC-----CCCcCCceEEEEec-cC-CchH-----H
Q 005624 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-------EG-----GEWLQKLKYGVFGL-GN-RQYE-----H 213 (687)
Q Consensus 153 ~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~-------~~-----~~~l~~~~~aVFGl-Gd-s~Y~-----~ 213 (687)
+.+++...+.+||++|+| .+.+|.-.+.|++++.... .. ...|+|+++.++.. |. ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 335678899999999999 9999999999999994310 11 22588999888765 42 2231 1
Q ss_pred HHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 214 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 214 f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
+......+...|.-+|.+.+-.+.....+. .+++.++|.++....+.++
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~g~~~-~~~~~~~~l~~a~~~~~~l 208 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAEGEES-GGRSFEDSCDEAEQRLLAL 208 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEecccC-CHHHHHHHHHHHHHHHHHH
Confidence 233445667777788998764443322222 4567778877766655543
No 84
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.26 E-value=4.5e-06 Score=81.76 Aligned_cols=125 Identities=9% Similarity=0.125 Sum_probs=94.8
Q ss_pred cCCceEEEEEecCc--chHHHHHHHHHH----HHHhhcCCCeeEEecCCCCCC------------c-chhHHHhccCCCe
Q 005624 102 DGKQKVTIFFGTQT--GTAEGFAKALAD----EARARYDKAIFKVVDIDDYAD------------E-EDEYEEKLKKENI 162 (687)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~----~l~~~~~~~~v~v~dl~~~~~------------~-~~~~~~~l~~~~~ 162 (687)
..|.+|+++.||.. |++..+|+.+.+ .+++++.+..++++|+.+++. + -.++.+++...+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 46889999999975 889999999999 666664446778888876542 1 1134567888999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+||++|+| +|.+|.-.+.|++|+.. ..+.+++.++++.|... .+....-..+...|..+|+..+
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv 152 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVV 152 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEEC
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEc
Confidence 99999999 99999999999999964 25899999999987433 2222222337778888999865
No 85
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.17 E-value=1.7e-05 Score=78.02 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=93.7
Q ss_pred CceEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeE-EecCCCCCCc------------chhHHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADE------------EDEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~------------~~~~~~~l~~~~~vi~~~s 168 (687)
.++|++++|| ..|+++.+|+.+.+.+.+ +..++ ++|+.+...- -.++.+.+...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~---g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE---GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCT---TEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccC---CCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4789999999 669999999999887742 24577 7787654321 1123456888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
+| +|..|.-.+.|++|+... ....+.++++++++.+-..+... .+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 999999999999999752 23468999999999864444222 2456788888889998663
No 86
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.15 E-value=9.4e-06 Score=79.63 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=110.1
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------------cchhHHHhccCCCeE
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIV 163 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~v 163 (687)
|+|+|++||-. +++..+|+.+.+.+ +.+ ..++++|+.+... +-..+.+.+...|.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKE--HTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTT--SEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCC--CeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 68999999964 47789999988888 443 5678888865432 112344567889999
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCc--hHHH--HHHHHHHHHHHHHcCCc
Q 005624 164 FFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQ--YEHF--NKIAKVVDEILANQGAK 231 (687)
Q Consensus 164 i~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~--Y~~f--~~~ak~ld~~L~~lGa~ 231 (687)
||++|.| .+.+|.-.+.|++++.... . +...|+|+++.++..+... |..+ .....-+...|.-+|.+
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 9999999999999985320 0 1125899999988776655 4211 11113445556667988
Q ss_pred cccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 232 RLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 232 ~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
.+-.+..+..+...++...+|.+++.....+.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776666555555567889999999877776655
No 87
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.10 E-value=2.1e-05 Score=76.99 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=105.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCC----CcchhHHHhccCCCeEEEEeeCCCCCCCCchH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna 179 (687)
||+|+|++||..++...+++.+.+.+++.+ ..++++|+.+.. .+-....+.+...+.+||++|+| .+.+|.-.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g--~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHT--DRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCT--TTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCC--CeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 689999999999876578999999887654 457888875432 22233456789999999999999 99999999
Q ss_pred HHHHHHHHhhc----CCCCCcCCceEEEEeccCCc---hH-------HHHHHHHHHHHHHHHcCCccccccccccCCCC-
Q 005624 180 ARFYKWFTEQK----EGGEWLQKLKYGVFGLGNRQ---YE-------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC- 244 (687)
Q Consensus 180 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~---Y~-------~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~- 244 (687)
+.|++++.... ..+..|+|+++.++...... |. .+.....-+...|.-+|.+.+-+....+....
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 99999885321 12246899999988765444 31 12233344566777789987766555443321
Q ss_pred -----cHHhHHHHHHHHHHHHHhhh
Q 005624 245 -----IEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 245 -----~e~~f~~W~~~l~~~L~~~~ 264 (687)
.++++++..++....|.++.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~~ 182 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDALQ 182 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 88
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.09 E-value=3.1e-05 Score=80.01 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=105.4
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---------------------------------
Q 005624 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------------------- 148 (687)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------------------- 148 (687)
||+|+|+|||.. |++..+|+.+.+.+++.+ ..++++|+.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g--~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 689999999999998754 5678888876542
Q ss_pred --cc-hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hHH-
Q 005624 149 --EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH- 213 (687)
Q Consensus 149 --~~-~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~- 213 (687)
++ ....+.+...+.+||++|.| .+.+|.-.+.|++++..... +...|+|+++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 11223578889999999999 89999999999999854210 1235889998888764333 421
Q ss_pred -H----HHHHHHHH-HHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 214 -F----NKIAKVVD-EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 214 -f----~~~ak~ld-~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
. ......+. ..|.-+|.+.+-++..+......++..++|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11222222 244567888665544333332335567777777777776655
No 89
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.07 E-value=8.9e-05 Score=73.14 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=102.4
Q ss_pred CCceEEEEEecCc------chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC
Q 005624 103 GKQKVTIFFGTQT------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT 176 (687)
Q Consensus 103 ~~~~v~I~YgSqt------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p 176 (687)
...+|+|+.||-- +++..+|+.+.+.+.+.+ ..++++|+.+- .+.....+.+...|.+||++|.| .+.+|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g--~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLG--HDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHTT--CEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcC--CEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4578999999988 899999999999998764 56788998752 23334557788999999999999 89999
Q ss_pred chHHHHHHHHHhhc-------------------CCCCCcCCceEEEEeccCCchHHHH------------HHHHHHHHHH
Q 005624 177 DNAARFYKWFTEQK-------------------EGGEWLQKLKYGVFGLGNRQYEHFN------------KIAKVVDEIL 225 (687)
Q Consensus 177 dna~~F~~~L~~~~-------------------~~~~~l~~~~~aVFGlGds~Y~~f~------------~~ak~ld~~L 225 (687)
.-.+.|++++.... .+...|+++++.++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 99999999764210 0123589999998877554333331 2223366778
Q ss_pred HHcCCccccccccccCC--CCcHHhHHHHHHH
Q 005624 226 ANQGAKRLVPVGLGDDD--QCIEDDFSAWREL 255 (687)
Q Consensus 226 ~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~ 255 (687)
.-+|++.+-+....+.+ ...++.++++++.
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRKH 198 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHHH
Confidence 88899876555443322 2344445555444
No 90
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.06 E-value=3.2e-05 Score=76.73 Aligned_cols=158 Identities=11% Similarity=0.108 Sum_probs=109.8
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------------------------c
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------------------E 150 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------------------~ 150 (687)
|++|+|++||-. +++..+|+.+.+.+++.+++..++++||.+.+.. -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 679999999955 8899999999999998755567888988654320 0
Q ss_pred hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchHH-----HHHH
Q 005624 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYEH-----FNKI 217 (687)
Q Consensus 151 ~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 217 (687)
.++.+++...+.+||++|.| .+..|.-.+.|++++.... . +...|+++++.++..-...|.. +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 12234578889999999999 9999999999999985321 0 1225889998888753333421 2334
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 218 ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
...+...|.-+|.+.+-.+.....+. ..+.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~~-~~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHNQ-FPDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTTT-SGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEecccc-CchHHHHHHHHHHHHHHHH
Confidence 45667778888998765544333332 2446778887766655543
No 91
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=97.31 E-value=5.8e-07 Score=88.64 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=92.9
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEe-cCCCC---CCc---------chhHHHhccCCCeEEEEe
Q 005624 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVV-DIDDY---ADE---------EDEYEEKLKKENIVFFFL 167 (687)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~-dl~~~---~~~---------~~~~~~~l~~~~~vi~~~ 167 (687)
.+|+|+|+|||.. |+++.+|+.+++.+.+ + ..++++ |+.++ +.+ -..+.+.+...+.+||++
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g--~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~t 81 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVT 81 (199)
Confidence 3578999999986 8999999999998875 3 456777 77652 111 112345678889999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
|+| +|..|...+.|++|+.... ...+.++++++|+.+...+. ...+...+...|..+|+..+.
T Consensus 82 P~Y-~~s~p~~lK~~iD~l~~~~--~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 82 PEY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 999 8999999999999997531 11589999999996433332 334567788888888988664
No 92
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=97.96 E-value=6e-05 Score=75.78 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=107.9
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC----------------------------------
Q 005624 105 QKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------------------- 148 (687)
Q Consensus 105 ~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------------------- 148 (687)
|+|+|++||-.. ++..+|+.+.+.+++.+ ..++++||.+.+.
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g--~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC
Confidence 789999999764 49999999999998875 5678888866431
Q ss_pred -cc-hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hHH--
Q 005624 149 -EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH-- 213 (687)
Q Consensus 149 -~~-~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~-- 213 (687)
++ ....+.+...+.+||++|.| .+..|.-.+.|++++..... ....|+|+++.++...... |..
T Consensus 80 ~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g 158 (228)
T 3tem_A 80 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG 158 (228)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTS
T ss_pred cHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcc
Confidence 00 01234577889999999999 99999999999999853210 1136899998888654333 421
Q ss_pred HHHHHHH----HHH-HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhhC
Q 005624 214 FNKIAKV----VDE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 265 (687)
Q Consensus 214 f~~~ak~----ld~-~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 265 (687)
++...+. +.+ .+.-+|.+.+-+....+.....+++..+|.++....|.++..
T Consensus 159 ~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 159 VNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp TTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2221122 111 222357776655555555556678899999998888887653
No 93
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=97.83 E-value=0.0003 Score=70.38 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=112.1
Q ss_pred CCceEEEEEecC-----cchHHHHHHHHHHHHHhhcCCC-eeEEecCCCCCCc--c------------------------
Q 005624 103 GKQKVTIFFGTQ-----TGTAEGFAKALADEARARYDKA-IFKVVDIDDYADE--E------------------------ 150 (687)
Q Consensus 103 ~~~~v~I~YgSq-----tGtae~~A~~la~~l~~~~~~~-~v~v~dl~~~~~~--~------------------------ 150 (687)
.||+|+|+.||- .+++..+++.+.+.+++.+++. .++++||.+.+.. +
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 378999999994 5899999999999999876556 7889998654321 0
Q ss_pred ---hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------CCC--CCc-CCceEEEEeccCCch------H
Q 005624 151 ---DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------EGG--EWL-QKLKYGVFGLGNRQY------E 212 (687)
Q Consensus 151 ---~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~~~--~~l-~~~~~aVFGlGds~Y------~ 212 (687)
..+.+.+...+.+||++|.| .+.+|.-.+.|++++.... ..+ ..+ .+++..|+..-...| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 12344667889999999999 9999999999999986421 011 235 789988886533333 2
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccccCC-CCcHHhHHHHHHHHHHHHHhhh
Q 005624 213 HFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 213 ~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
.+......+...|.-+|.+.+-.+.....+ ...++.++++.+++-...++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778888899876543322222 2356778888877665555443
No 94
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=97.78 E-value=0.00049 Score=67.11 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=87.5
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---cc--------hhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EE--------DEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~--------~~~~~~l~~~~~vi~~~sTy 170 (687)
+|+|.|+.||. ...++.+|+.+++.+.. +..++++|+.+... +. ..+.+.+...|.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~---~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG---RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT---TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 46799999994 45678888888776643 25677888766432 11 11234578889999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+|..|.-.+.|++|+.... ....+.++.++++|.+-..+... .+...+...|..+|+..+
T Consensus 79 -n~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred -cccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 9999999999999997421 23468999999998643333222 234557777888898754
No 95
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=97.76 E-value=0.00025 Score=69.27 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=100.9
Q ss_pred CCceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeE-EecCCCCCCc-------------chhHHHhccCCCeEEEE
Q 005624 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFK-VVDIDDYADE-------------EDEYEEKLKKENIVFFF 166 (687)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~-------------~~~~~~~l~~~~~vi~~ 166 (687)
.+|+|+++.||- .+++..+|+.+.+.+ .. +..++ ++|+.+...- -.++.+.+...+.+||+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~ 79 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PA--SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIV 79 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CT--TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cC--CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEE
Confidence 358999999995 578888888776533 22 24566 7787754321 11234567889999999
Q ss_pred eeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc-c-cc------c
Q 005624 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV-P-VG------L 238 (687)
Q Consensus 167 ~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~-~-~g------~ 238 (687)
+|+| +|..|.-.+.|++|+... ....+.+++.++++..-..+... .+...+...|..+|+..+- | .. .
T Consensus 80 sP~y-~~~~~~~lK~~iD~~~~~--~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~ 155 (193)
T 3svl_A 80 TPEY-NYSVPGGLKNAIDWLSRL--PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNK 155 (193)
T ss_dssp ECCB-TTBCCHHHHHHHHHHHTS--TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGG
T ss_pred eccc-CCCCCHHHHHHHHHHhhc--CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhh
Confidence 9999 999999999999999852 12358999999998622222211 3457788888889998552 1 11 1
Q ss_pred ccCCCC--cHHhHHHHHHHHHHHHHhhh
Q 005624 239 GDDDQC--IEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 239 gD~~~~--~e~~f~~W~~~l~~~L~~~~ 264 (687)
-|++.+ .+++..+..+.+...+....
T Consensus 156 f~~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 156 VDPQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 122211 23455566666666555544
No 96
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.75 E-value=0.0002 Score=69.02 Aligned_cols=151 Identities=7% Similarity=-0.017 Sum_probs=102.5
Q ss_pred ceEEEEEecCc---chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 105 QKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 105 ~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
|+|+|++||-. +.+..+++..+ +.. ..+++.||.+ ..|-....+.+...+.+||.+|.| .+.+|.-.+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~----~~~--~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAI----ENF--SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHH----TTC--TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHH----hcC--CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 57999999965 44444443333 332 3478999986 434344557889999999999999 8999999999
Q ss_pred HHHHHHhh---cCCCCCcCCceEEEEeccCCchHH----------HHHHHHHHHHHHHHcCCccccccccccCCCCcHHh
Q 005624 182 FYKWFTEQ---KEGGEWLQKLKYGVFGLGNRQYEH----------FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248 (687)
Q Consensus 182 F~~~L~~~---~~~~~~l~~~~~aVFGlGds~Y~~----------f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~ 248 (687)
|++++... -.....|+|+++.++.......+. +....+-+...+.-+|.+-+-+......+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 99987431 011236899999888664443222 22344445556777899877666655445556888
Q ss_pred HHHHHHHHHHHHHhh
Q 005624 249 FSAWRELVWPELDNL 263 (687)
Q Consensus 249 f~~W~~~l~~~L~~~ 263 (687)
.++|.++..+.|.+.
T Consensus 153 ~~~~l~~~~~~l~~~ 167 (177)
T 3ha2_A 153 QQRLLVAYQQYATNV 167 (177)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccc
Confidence 999999887777643
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.39 E-value=0.0012 Score=72.11 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=104.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCC----CCCcchhHHHhccCCCeEEEEeeCCCCCCCCch
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD----YADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~----~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdn 178 (687)
.+|+|+|++||-.++...+.+.|.+.+.+. ..+++.|+.+ +..+-....+.+...+.+||++|.| .+..|.-
T Consensus 235 ~~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~ 310 (413)
T 3l9w_A 235 SSGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPL 310 (413)
T ss_dssp --CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHH
T ss_pred CCCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHH
Confidence 347899999998887666888888888653 3467887732 2333334456789999999999999 9999999
Q ss_pred HHHHHHHHHhhc----CCCCCcCCceEEEEec-cCCc--hH-----HHHHHHHHHHHHHHHcCCccccccccccCCCCcH
Q 005624 179 AARFYKWFTEQK----EGGEWLQKLKYGVFGL-GNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIE 246 (687)
Q Consensus 179 a~~F~~~L~~~~----~~~~~l~~~~~aVFGl-Gds~--Y~-----~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e 246 (687)
.+.|++++.... ..+..|+|+++.++.. |... |. .|...-.-+...|.-+|.+-+-++.......-.+
T Consensus 311 lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d 390 (413)
T 3l9w_A 311 LKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDD 390 (413)
T ss_dssp HHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCH
T ss_pred HHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCH
Confidence 999999885321 1233589999887754 3321 21 1222335566667778998765554433333345
Q ss_pred HhHHHHHHHHHHHHHhhh
Q 005624 247 DDFSAWRELVWPELDNLL 264 (687)
Q Consensus 247 ~~f~~W~~~l~~~L~~~~ 264 (687)
++...+.+.....|..+.
T Consensus 391 ~~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 391 ETLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666554
No 98
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.11 E-value=0.0037 Score=64.57 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=104.3
Q ss_pred cCCceEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc------------------------------
Q 005624 102 DGKQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------------------ 149 (687)
Q Consensus 102 ~~~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------------------ 149 (687)
...|+|+|+||+ ..+.+..+++.+.+.+++.| ..|+++||-+...+
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G--~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAG--HEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQG 97 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCC--CeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcC
Confidence 456899999998 44678889999999998876 56888888432211
Q ss_pred -----chhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC----------------CCCCcCCceEEEEeccC
Q 005624 150 -----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------------GGEWLQKLKYGVFGLGN 208 (687)
Q Consensus 150 -----~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~----------------~~~~l~~~~~aVFGlGd 208 (687)
-....+.+...+.+||+.|.| .+.+|.-.+.|++..-.... +...|+|+++.++-.-+
T Consensus 98 ~~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g 176 (280)
T 4gi5_A 98 TQSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAG 176 (280)
T ss_dssp CSCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECS
T ss_pred CCcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecC
Confidence 011224567789999999999 89999999999988753110 12247888877664433
Q ss_pred CchHHHHHH--HHHHHHHHH--------HcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 209 RQYEHFNKI--AKVVDEILA--------NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 209 s~Y~~f~~~--ak~ld~~L~--------~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
...+.|... ...+++.|. =.|.+.+-|....+.+...++++++|.+++-+.|.++.
T Consensus 177 ~~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 242 (280)
T 4gi5_A 177 GWAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLW 242 (280)
T ss_dssp SCGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred CChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 322222111 112333322 13666665666555555678889999999888888765
No 99
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=75.64 E-value=6 Score=34.50 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=36.6
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCC
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~ 147 (687)
..+++|+++-+|--||+.-++.+|.+.+.+.+....+...++.++.
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~ 64 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE 64 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh
Confidence 3567899999999999999999999999887644345556666654
No 100
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=61.51 E-value=14 Score=31.86 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=41.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTy 170 (687)
+++|+++-|+--||+ -+++++.+.+++++....+.-.++.+.. +.+.+++ +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~-------~~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAG-------EKGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTT-------HHHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhccCCC-EEEEccch
Confidence 578999999999888 8999999999988755555556666654 2345567 45555554
No 101
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=59.88 E-value=15 Score=32.97 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=60.0
Q ss_pred EEEEecCcchHHHHHHHHHHH-HHhhcCCCeeEEecCCCCCCcchhHHHhccCCC-eEEEEeeCCCCCCCCchHHHHHHH
Q 005624 108 TIFFGTQTGTAEGFAKALADE-ARARYDKAIFKVVDIDDYADEEDEYEEKLKKEN-IVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~-~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
.|+-++.-|..-.+-..+... ++..| ++|+++-..-+ .+++.+...+.+ -+|.+|++. +.-.+.+.++.+.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G----~~Vi~lG~~~p-~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~ 77 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAG----FNVVNIGVLSP-QELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQK 77 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTT----CEEEEEEEEEC-HHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHH
Confidence 355566666555555554444 44444 56777754332 223334444333 345555555 4444567777777
Q ss_pred HHhhcCCCCCcCCceEEEEecc---CCchHHHHHHHHHHHHHHHHcCCccccccc
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLG---NRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlG---ds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g 237 (687)
|++. .+.+.++.|=|-. ...| ....+.++++|+..+++.|
T Consensus 78 l~~~-----g~~~i~v~vGG~~~~~~~~~-------~~~~~~~~~~G~d~~~~~g 120 (137)
T 1ccw_A 78 CDEA-----GLEGILLYVGGNIVVGKQHW-------PDVEKRFKDMGYDRVYAPG 120 (137)
T ss_dssp HHHT-----TCTTCEEEEEESCSSSSCCH-------HHHHHHHHHTTCSEECCTT
T ss_pred HHhc-----CCCCCEEEEECCCcCchHhh-------hhhHHHHHHCCCCEEECCC
Confidence 7753 1335666554432 2233 2244578889999988654
No 102
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=59.18 E-value=10 Score=32.73 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=38.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~s 168 (687)
.++|+++-+|--||+ -+|+++.+.+.+.+....+...++.++. ..+.++|+ |+.++
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~-------~~~~~~D~-Ii~t~ 59 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLS-------EVVDRFDV-VLLAP 59 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHH-------HHTTTCSE-EEECS
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhcCCCCE-EEECC
Confidence 367999999999999 9999999999887643344445554433 23456674 44444
No 103
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=46.65 E-value=26 Score=25.34 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhhcCC
Q 005624 65 LIGCVVVFILRRSSS 79 (687)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (687)
++....+++|||+..
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 333344555555543
No 104
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=45.16 E-value=16 Score=31.44 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=31.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCC-CeeEEecCCC
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDK-AIFKVVDIDD 145 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~-~~v~v~dl~~ 145 (687)
.+++|+++-++--||+.-++.+|.+.+.+.+.. ..+...++.+
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~ 60 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGE 60 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHH
Confidence 367899999999999999999999999887643 3344444443
No 105
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=44.77 E-value=24 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhhcC
Q 005624 62 IAVLIGCVVVFILRRSS 78 (687)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (687)
++++++..+++++||++
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 44444444445555554
No 106
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.60 E-value=31 Score=24.89 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=5.0
Q ss_pred HHHHhhhhcC
Q 005624 69 VVVFILRRSS 78 (687)
Q Consensus 69 ~~~~~~~~~~ 78 (687)
.+++++||+.
T Consensus 30 ~~~~~~RRr~ 39 (44)
T 2ks1_B 30 GIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHhhhhH
Confidence 3445555554
No 107
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=39.10 E-value=48 Score=29.28 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=35.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcC-CCeeEEecCCCCC
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD-KAIFKVVDIDDYA 147 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~-~~~v~v~dl~~~~ 147 (687)
.+++|+++-++--||+.-++.+|.+.+.+.+. ...+...++.++.
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~~ 57 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP 57 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHCC
Confidence 46789999999999999999999999987764 4445555665553
No 108
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=36.53 E-value=79 Score=27.12 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=47.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEE--ecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKV--VDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v--~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
++++|+++-+ ..++|.-+++++.+.+++++. .+++ ....++. +.+.++|+ |++.|-. +
T Consensus 5 ~~mkIlL~C~-aGmSTsllv~km~~~a~~~gi--~v~i~a~~~~~~~-------~~~~~~Dv-vLLgPQV---------~ 64 (108)
T 3nbm_A 5 KELKVLVLCA-GSGTSAQLANAINEGANLTEV--RVIANSGAYGAHY-------DIMGVYDL-IILAPQV---------R 64 (108)
T ss_dssp CCEEEEEEES-SSSHHHHHHHHHHHHHHHHTC--SEEEEEEETTSCT-------TTGGGCSE-EEECGGG---------G
T ss_pred cCceEEEECC-CCCCHHHHHHHHHHHHHHCCC--ceEEEEcchHHHH-------hhccCCCE-EEEChHH---------H
Confidence 3566666655 568888999999999998873 3444 3444433 24566775 5555443 1
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEe
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFG 205 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFG 205 (687)
..++.+++.. .-.++++.|.-
T Consensus 65 y~~~~ik~~~----~~~~ipV~vI~ 85 (108)
T 3nbm_A 65 SYYREMKVDA----ERLGIQIVATR 85 (108)
T ss_dssp GGHHHHHHHH----TTTTCEEEECC
T ss_pred HHHHHHHHHh----hhcCCcEEEeC
Confidence 2334444321 12368888885
No 109
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=33.11 E-value=58 Score=32.59 Aligned_cols=74 Identities=16% Similarity=0.024 Sum_probs=40.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|+|+=|++. +..|..|.+.|++.+ ..|++++.++...+ .++|.+++++|+.- +....-.++..+.+.
T Consensus 4 m~~vLiV~g~~~---~~~a~~l~~aL~~~g--~~V~~i~~~~~~~~----~~~L~~yDvIIl~d-~~~~~l~~~~~~~L~ 73 (259)
T 3rht_A 4 MTRVLYCGDTSL---ETAAGYLAGLMTSWQ--WEFDYIPSHVGLDV----GELLAKQDLVILSD-YPAERMTAQAIDQLV 73 (259)
T ss_dssp --CEEEEESSCT---TTTHHHHHHHHHHTT--CCCEEECTTSCBCS----SHHHHTCSEEEEES-CCGGGBCHHHHHHHH
T ss_pred CceEEEECCCCc---hhHHHHHHHHHHhCC--ceEEEecccccccC----hhHHhcCCEEEEcC-CccccCCHHHHHHHH
Confidence 678888833322 334556666676655 45677777665322 24688999877762 221222334455666
Q ss_pred HHHH
Q 005624 184 KWFT 187 (687)
Q Consensus 184 ~~L~ 187 (687)
+|..
T Consensus 74 ~yV~ 77 (259)
T 3rht_A 74 TMVK 77 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 110
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=31.20 E-value=2.4e+02 Score=28.27 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=42.8
Q ss_pred CceEEEEEecCcch-HHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCc-hHHH
Q 005624 104 KQKVTIFFGTQTGT-AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAAR 181 (687)
Q Consensus 104 ~~~v~I~YgSqtGt-ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pd-na~~ 181 (687)
..+|+|+-|.. +. -+..+..|++.|.+.+ ...|++.+-.....+...+.+.|.+++++|+ .+.| +..++ ..+.
T Consensus 4 ~~kvLiv~G~~-~H~~~~~~~~l~~~l~~~g-~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~--~~~~-~~l~~~~~~~ 78 (281)
T 4e5v_A 4 PIKTLLITGQN-NHNWQVSHVVLKQILENSG-RFDVDFVISPEQGKDMSGFVLDFSPYQLVVL--DYNG-DSWPEETNRR 78 (281)
T ss_dssp CEEEEEEESCC-SSCHHHHHHHHHHHHHHTT-SEEEEEEECCCTTSCCTTCCCCCTTCSEEEE--CCCS-SCCCHHHHHH
T ss_pred ceEEEEEcCCC-CCChHHHHHHHHHHHHhcC-CEEEEEEeCCccccchhHHhhhhhcCCEEEE--eCCC-CcCCHHHHHH
Confidence 45788885543 33 5777788888887664 2345554321000000111135889998773 4443 34443 4556
Q ss_pred HHHHHHh
Q 005624 182 FYKWFTE 188 (687)
Q Consensus 182 F~~~L~~ 188 (687)
|.+++++
T Consensus 79 l~~yV~~ 85 (281)
T 4e5v_A 79 FLEYVQN 85 (281)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6667764
No 111
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=27.85 E-value=37 Score=31.62 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=39.9
Q ss_pred CcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHH
Q 005624 195 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (687)
Q Consensus 195 ~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (687)
..+..+++|+-.||..-.-++..+..+.++|+++|++...-.-..|+-..+.+.+..|
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a 64 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAW 64 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 3567899999999997666777888899999999987544333344332344444444
No 112
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=26.93 E-value=2.4e+02 Score=27.77 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHh
Q 005624 122 AKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (687)
Q Consensus 122 A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~ 188 (687)
+..|++.|...+ ..|++..+++.... .-.+.|.+++++|+...+.|+--.++..+.|.+++.+
T Consensus 34 ~~~i~~~L~~~g--f~V~~~t~dd~~~~--~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~ 96 (252)
T 1t0b_A 34 HTVIASYLAEAG--FDAATAVLDEPEHG--LTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE 96 (252)
T ss_dssp HHHHHHHHHHTT--CEEEEEESSSGGGG--CCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCC--cEEEEEeccCcccc--CCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc
Confidence 445677776654 45666554443210 0024588999988765555333333446677777764
No 113
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=26.87 E-value=55 Score=28.38 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=36.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchh-HHHhccCCCeEEEE
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE-YEEKLKKENIVFFF 166 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~-~~~~l~~~~~vi~~ 166 (687)
..-+.|.|||..+++.+.++.|.+ .| ..+.++++..+.|=+.+ +.+.+.+.+.++++
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~~----~G--i~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvv 71 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLKE----EG--ISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHHH----TT--CCEEEEEECSSCSCCHHHHHHHHTTCSCCCCC
T ss_pred CCEEEEEECccHHHHHHHHHHHHH----CC--CceEEEEECeEecCCHHHHHHHHcCCCEEEEE
Confidence 345677899999999998876643 44 34677877766544333 33445555555544
No 114
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=25.76 E-value=27 Score=32.43 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=38.2
Q ss_pred cCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHH
Q 005624 196 LQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (687)
Q Consensus 196 l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (687)
.+..+++|+-.||.-+ .-++..+..+.++|++.|++...-.-..|+ ..+.+.+.+|.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 4567999999999876 457777888999999999985543334454 44555555554
No 115
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=23.26 E-value=1.2e+02 Score=31.20 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCC-eEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCC
Q 005624 117 TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKEN-IVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEW 195 (687)
Q Consensus 117 tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~-~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~ 195 (687)
|+...++.+++.+++.|-...++++|+.....-......-+-+.. .+-|+.- +..| .|.+.+.+...+.. .
T Consensus 164 n~~~~i~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlG-v~~g-~p~~p~~L~~~~~~------l 235 (316)
T 3c6c_A 164 NTTRTLRAMARRFQELGIKPELEVFSPGDILFGKQLIEEGLIDGVPLFQMVLG-VLWG-APASTETMIYQRNL------I 235 (316)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEECS-CTTS-CCSCHHHHHHHHTT------S
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEe-cCCC-CCCCHHHHHHHHHh------c
Confidence 667777777777877775555666665442210000111122334 3344333 5334 44556667666643 2
Q ss_pred cCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC
Q 005624 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (687)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~ 241 (687)
..+..++|+|.|-.+.+ ++..+ ..+|+. +-+|+-|.
T Consensus 236 p~~~~wsv~g~Gr~q~p-~~~~A-------~~~GGh--vRVGlEDn 271 (316)
T 3c6c_A 236 PANAQWAAFGIGRDQMP-MMAQA-------ALLGGN--VRVGLEDN 271 (316)
T ss_dssp CTTSEEEEECCGGGHHH-HHHHH-------HHHTCB--EEESTTTC
T ss_pred CCCCeEEEEecCcchHH-HHHHH-------HHcCCC--eEEccccc
Confidence 35678999999977663 22222 245765 24566554
No 116
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=21.49 E-value=1.1e+02 Score=30.87 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHh-ccCCCeEEEEeeCCCCCCCCc--hHHHHHHHHHhhcCCC
Q 005624 117 TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK-LKKENIVFFFLATYGDGEPTD--NAARFYKWFTEQKEGG 193 (687)
Q Consensus 117 tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~-l~~~~~vi~~~sTyG~G~~pd--na~~F~~~L~~~~~~~ 193 (687)
|+...++.+++.+.+.+-...+.++|+.....-......- ++.--.+-|+.-.. .|.|++ +...|.+.+...
T Consensus 122 N~~~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~-~g~~~~~~~l~~~~~~l~~~---- 196 (275)
T 3no5_A 122 NPPELVDWLAAEMKTYGIKPEVEAFDLSMIFQAAAMQAAGAIVGPLHIQFVMGIK-NAMPVDREVLEFYVQTLKRL---- 196 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHHHTSSCSSCEEEEEECCT-TSCCCCHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHHcCCeeEEEEEcHHHHHHHHHHHHCCCCCCCeeEEEEeCCC-CCCCCCHHHHHHHHHHHHhC----
Confidence 5677888888888888755556666664422100001111 23223344443333 244433 444454444331
Q ss_pred CCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC
Q 005624 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (687)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~ 241 (687)
-.+..++|+|.|-.+++ ++..+ ..+|+. +-+|+-|.
T Consensus 197 --~~~~~w~v~g~Gr~~~p-~~~~A-------~~~GGh--vRVGlEDn 232 (275)
T 3no5_A 197 --SPDATWTGAGIGRHQLT-MARWS-------LELGGH--CRTGLEDN 232 (275)
T ss_dssp --CTTCEEEEEECGGGHHH-HHHHH-------HHHTCE--EEESTTTC
T ss_pred --CCCCeEEEEecCHhhHH-HHHHH-------HHhCCC--eEEcCCcc
Confidence 23678999999977653 22222 245765 24566553
No 117
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=21.23 E-value=73 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCeEEEecCCc--chhHHHHHHHHHHh
Q 005624 537 VPIIMIGPGTG--LAPFRGFLQERFAL 561 (687)
Q Consensus 537 ~PiImIa~GTG--IAPfrsflq~r~~~ 561 (687)
..|++.|+||| |-|.+++.++..++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC
Confidence 45888899997 88999999987654
No 118
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=20.96 E-value=72 Score=32.41 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHh-ccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCC
Q 005624 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK-LKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGE 194 (687)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~-l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~ 194 (687)
-|++..++.+++.+.+.|-...+.++|+.....-......- ++.--.+.|+.- +..| .|.+.+.+...+...
T Consensus 125 ~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlG-v~~g-~~~~~~~L~~~~~~~----- 197 (284)
T 3chv_A 125 ENPPDLVDWLAAQMRSYRVTPEIEAFDLSHILRAIDMHGRGLLYGKLYVQFVMG-VKNA-MPADREVFDFYVRMM----- 197 (284)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEEEC-CTTS-CCCCHHHHHHHHHHH-----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEe-cCCC-CCCCHHHHHHHHHhc-----
Confidence 37788888888889888755556666654332100000011 222223444433 5334 455556666555432
Q ss_pred CcCC---ceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC
Q 005624 195 WLQK---LKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (687)
Q Consensus 195 ~l~~---~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~ 241 (687)
..+ ..++|+|.|-.+++ ++.. -..+|+. +-+|+-|.
T Consensus 198 -p~~~~~~~ws~~g~Gr~q~p-~~~~-------A~~~GGh--vRVGlEDn 236 (284)
T 3chv_A 198 -RTRAPQAEWCAAGIGANQLT-VNEW-------AIAAGGH--TRTGLEDN 236 (284)
T ss_dssp -HHHCTTSEEEEEECTTHHHH-HHHH-------HHHTTCE--EEESTTTC
T ss_pred -cCCCCCceEEEEecCcchhH-HHHH-------HHHcCCC--eEEecccc
Confidence 123 67999999977763 2222 2246776 34566654
No 119
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=20.66 E-value=93 Score=31.55 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHh-ccCCC-eEEEEeeCCCCCCCCchHHHHHHHHHhhcCCC
Q 005624 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK-LKKEN-IVFFFLATYGDGEPTDNAARFYKWFTEQKEGG 193 (687)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~-l~~~~-~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~ 193 (687)
-|+...++.+++.+.+.|-...+.++|+.....-......- +++.. .+.|+.- +..| .|.+.+.+...+...- .
T Consensus 126 ~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gl~p~~p~~~~~VlG-v~~g-~~~~~~~L~~~~~~lp--~ 201 (282)
T 2y7e_A 126 INHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKKGIITQNPLHIQFVLG-VPGG-MSGKPKNLMYMMEHLK--E 201 (282)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHTTSCCCSSCEEEEEEC-CTTS-CCCCHHHHHHHHHHHH--H
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHcCCCCCCCeEEEEEEe-cCCC-CCCCHHHHHHHHHhcc--c
Confidence 36777788888888888755556666654332100000011 21222 3333333 5334 3445555555554320 0
Q ss_pred CCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC
Q 005624 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (687)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~ 241 (687)
...+..++|+|.|-.+.+ ++..+ ..+|+. +-+|+-|.
T Consensus 202 -~~~~~~wsv~g~Gr~q~p-~~~~A-------~~~GGh--vRVGlEDn 238 (282)
T 2y7e_A 202 -EIPTATWAVAGIGRWHIP-TSLIA-------MVTGGH--IRCGFEDN 238 (282)
T ss_dssp -HSTTCEEEEEECGGGHHH-HHHHH-------HTTTCE--EEESTTTC
T ss_pred -ccCCCeEEEEecCcchHH-HHHHH-------HHcCCC--eEEccccc
Confidence 011677999999977663 22222 246776 34566554
Done!