BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005625
(687 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/671 (66%), Positives = 542/671 (80%), Gaps = 5/671 (0%)
Query: 2 AAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGR 61
A ++R+ S RER+ +TL RNE+++LLSR A+GKGILQ + +I E + + ++ R
Sbjct: 4 AERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEAL--PEQTR 61
Query: 62 QNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFK 121
+ L GPF +++KS QEAIVLPP+VA+AVRPRPGVWEY+RVN++ L VE+L +E+LHFK
Sbjct: 62 KKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFK 121
Query: 122 EELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLL 181
EELVD N F LELDFEPFNA+ PRP IGNGV FLNRHLS+ +F +K+ L PLL
Sbjct: 122 EELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLL 181
Query: 182 DFLRAHKYKGHLLMLNDXXXXXXXXXXXXXKAEDHLSKLPPDTPFSQFEYVLQGMGFEKG 241
FLR H ++G LML++ KAE++L++L +T + +FE + +G E+G
Sbjct: 182 KFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERG 241
Query: 242 WGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDT 301
WGD AE VL+M+ LLLD+L+APDP TLE FLGR+PMVFNVVILSPHGYF Q NVLG PDT
Sbjct: 242 WGDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDT 301
Query: 302 GGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEH 361
GGQVVYILDQVRALE EML RIK+QGL+I P+ILI+TRL+PDA GTTC +RLERV +E+
Sbjct: 302 GGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEY 361
Query: 362 THILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLV 421
ILRVPFR+EKGI+R+WISRF+VWPYLET+TED E++ EL G PD IIGNYSDGNLV
Sbjct: 362 CDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLV 421
Query: 422 ASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITS 481
ASLLA+K+G+TQCTIAHALEKTKYPDSDIYWKK D+KYHFSCQFTAD+ AMN+ DFIITS
Sbjct: 422 ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITS 481
Query: 482 TYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK 541
T+QEIAG+K TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADM IYFPY+E+++
Sbjct: 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKR 541
Query: 542 RLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR 601
RLT H IE+LL+ +N EH+ L D+ KPI+F+MARLD VKN++GLVE YGKN++LR
Sbjct: 542 RLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLR 601
Query: 602 ELVNLVVVAGYIDVNK-SKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYR 660
EL NLVVV G D K SKD EE AE++KM++L++ YKL+GQFRWI++Q +R RNGELYR
Sbjct: 602 ELANLVVVGG--DRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYR 659
Query: 661 YIADTKGAFVQ 671
YI DTKGAFVQ
Sbjct: 660 YICDTKGAFVQ 670
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/671 (64%), Positives = 533/671 (79%), Gaps = 5/671 (0%)
Query: 2 AAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGR 61
A ++R+ S RER+ +TL RNE+++LLSR A+GKGILQ + +I E + + ++ R
Sbjct: 4 AERXITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEAL--PEQTR 61
Query: 62 QNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFK 121
+ L GPF +++KS QEAIVLPP+VA+AVRPRPGVWEY+RVN++ L VE+L +E+LHFK
Sbjct: 62 KKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFK 121
Query: 122 EELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLL 181
EELVD N F LELDFEPFNA+ PRP IGNGV FLNRHLS+ +F +K+ L PLL
Sbjct: 122 EELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLL 181
Query: 182 DFLRAHKYKGHLLMLNDXXXXXXXXXXXXXKAEDHLSKLPPDTPFSQFEYVLQGMGFEKG 241
FLR H ++G L L++ KAE++L++L +T + +FE + +G E+G
Sbjct: 182 KFLRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERG 241
Query: 242 WGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDT 301
WGD AE VL+ + LLLD+L+APDP TLE FLGR+P VFNVVILSPHGYF Q NVLG PDT
Sbjct: 242 WGDNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDT 301
Query: 302 GGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEH 361
GGQVVYILDQVRALE E L RIK+QGL+I P+ILI+TRL+PDA GTTC +RLERV +E+
Sbjct: 302 GGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEY 361
Query: 362 THILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLV 421
ILRVPFR+EKGI+R+WISRF+VWPYLET+TED E++ EL G PD IIGNYSDGNLV
Sbjct: 362 CDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLV 421
Query: 422 ASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITS 481
ASLLA+K+G+TQCTIAHALEKTKYPDSDIYWKK D+KYHFSCQFTAD+ A N+ DFIITS
Sbjct: 422 ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITS 481
Query: 482 TYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK 541
T+QEIAG+K TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD IYFPY+E+++
Sbjct: 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKR 541
Query: 542 RLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR 601
RLT H IE+LL+ +N EH+ L D+ KPI+F+ ARLD VKN++GLVE YGKN++LR
Sbjct: 542 RLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLR 601
Query: 602 ELVNLVVVAGYIDVNK-SKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYR 660
EL NLVVV G D K SKD EE AE +K ++L++ YKL+GQFRWI++Q +R RNGELYR
Sbjct: 602 ELANLVVVGG--DRRKESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYR 659
Query: 661 YIADTKGAFVQ 671
YI DTKGAFVQ
Sbjct: 660 YICDTKGAFVQ 670
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 186/421 (44%), Gaps = 61/421 (14%)
Query: 275 LPMVFNVVILSPHGYFGQANVLGL--PDTGGQVVYILDQVRALENEMLLRIKRQGLDISP 332
+ + +V L+P G F A+ PD GGQ+VY+ E+ L + G+ +
Sbjct: 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGVQVD- 54
Query: 333 KILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETF 392
I+TR I D + ++ T I+R+PF +K ++ + ++WPYL +
Sbjct: 55 ---IITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEY 106
Query: 393 TEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIY- 451
+ E FP + +Y DG L LL G+ H+L K ++
Sbjct: 107 VNKI-INFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNT 165
Query: 452 --WKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR 509
+K+ DE++ F + A+ + M+ AD II ST QE GQY SH LYR
Sbjct: 166 SNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHD------LYR 212
Query: 510 VVHGIDVFDPKFNIVSPGADMDIY-FPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLS 568
++ D KF+++ PG + ++ Y +K + I + L + +G S
Sbjct: 213 GAVNVED-DDKFSVIPPGVNTRVFDGEYGDK------IKAKITKYL------ERDLG--S 257
Query: 569 DRSK-PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKD-----RE 622
+R + P + + +RLD KN GLVE Y +N +L++ NLV+ I+ N +D +E
Sbjct: 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIE-NPFEDYSRAGQE 316
Query: 623 EIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFL 682
E + K+ EL+ G+ + + G Y Y+A +KG+ + P
Sbjct: 317 EKEILGKIIELIDNNDCRGKVSMFPLNSQQELAG-CYAYLA-SKGSVFALTSFYEPFGLA 374
Query: 683 P 683
P
Sbjct: 375 P 375
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 25/157 (15%)
Query: 243 GDTAE--HVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPD 300
GD AE +L + L+ ++ +LE + + + V+ P G NV +
Sbjct: 423 GDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQG--NNTNVFSI-G 479
Query: 301 TGGQVVYIL---DQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357
TG Y++ A+ + L++ K+ G D+ P I + +I
Sbjct: 480 TGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI---------------- 523
Query: 358 GTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTE 394
+T R + +EKG++ + + +V PY++ FTE
Sbjct: 524 -QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE 559
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 12 IRERVEDTLSVHRNELVSLLSRYVAQGKGILQP 44
I+E+V+D L+V EL+ L Y A+ K +++P
Sbjct: 250 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEP 282
>pdb|1O70|A Chain A, Novel Fold Revealed By The Structure Of A Fas1 Domain Pair
From The Insect Cell Adhesion Molecule Fasciclin I
Length = 324
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 30 LLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEA--IVLPPF-- 85
++ + K IL+ H+ I + ++ +++K +QE+ ++LP F
Sbjct: 219 FMADFSYHSKSILERHLAISD--------------KEYTMKDLVKFSQESGSVILPTFRD 264
Query: 86 -VAIAVRPRPG----VWEYVRVNVYELSVE 110
++I V G +W Y ++NVY VE
Sbjct: 265 SLSIRVEEEAGRYVIIWNYKKINVYRPDVE 294
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 51/243 (20%)
Query: 297 GLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356
G D+GG VYIL L +QG+++ I TR ++G E V
Sbjct: 37 GTGDSGGMNVYILSTATEL--------AKQGIEVD----IYTRATRPSQG-------EIV 77
Query: 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS 416
E+ ++ + +G+ S+ ++ L FT + S E + D I +Y
Sbjct: 78 RVAENLRVINIAAGPYEGL-----SKEELPTQLAAFTGGMLSFTRREKVTY-DLIHSHYW 131
Query: 417 DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD 476
V LL I AH L K D E Q D NAD
Sbjct: 132 LSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVD-----NAD 186
Query: 477 FIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPY 536
+ +T +E + ++H D + ++VSPGAD+++Y P
Sbjct: 187 VLAVNTQEE---------------------MQDLMHHYDADPDRISVVSPGADVELYSPG 225
Query: 537 SEK 539
+++
Sbjct: 226 NDR 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,825,143
Number of Sequences: 62578
Number of extensions: 897093
Number of successful extensions: 1764
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 16
length of query: 687
length of database: 14,973,337
effective HSP length: 105
effective length of query: 582
effective length of database: 8,402,647
effective search space: 4890340554
effective search space used: 4890340554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)