Query 005625 Match_columns 687 No_of_seqs 327 out of 1955 Neff 5.6 Searched_HMMs 46136 Date Thu Mar 28 11:15:38 2013 Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005625hhsearch_cdd -cpu 12 -v 0 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF00862 Sucrose_synth: Sucros 100.0 2E-188 3E-193 1518.9 32.4 550 7-556 1-550 (550) 2 PLN00142 sucrose synthase 100.0 3E-183 6E-188 1574.5 57.7 686 1-686 2-688 (815) 3 TIGR02470 sucr_synth sucrose s 100.0 3E-178 6E-183 1532.5 60.3 663 24-686 1-665 (784) 4 TIGR02468 sucrsPsyn_pln sucros 100.0 5.2E-56 1.1E-60 523.7 31.1 382 278-686 169-593 (1050) 5 TIGR02472 sucr_P_syn_N sucrose 100.0 8.2E-43 1.8E-47 385.6 32.1 355 279-686 1-362 (439) 6 KOG0853 Glycosyltransferase [C 100.0 4.2E-44 9E-49 394.8 14.3 385 195-686 1-387 (495) 7 PRK00654 glgA glycogen synthas 100.0 3.6E-31 7.9E-36 295.3 27.5 337 279-686 1-378 (466) 8 TIGR03449 mycothiol_MshA UDP-N 100.0 8.2E-30 1.8E-34 276.0 27.2 320 281-686 1-324 (405) 9 cd03800 GT1_Sucrose_synthase T 100.0 3.5E-29 7.6E-34 266.8 29.0 323 280-686 1-324 (398) 10 PLN02316 synthase/transferase 100.0 1.4E-28 3.1E-33 292.2 31.2 315 279-686 588-941 (1036) 11 TIGR02095 glgA glycogen/starch 100.0 1.6E-28 3.5E-33 273.9 28.7 339 279-686 1-387 (473) 12 PLN02939 transferase, transfer 100.0 3.9E-28 8.5E-33 284.5 32.8 365 256-686 455-878 (977) 13 PRK14098 glycogen synthase; Pr 100.0 5.4E-28 1.2E-32 272.1 29.0 350 276-686 4-403 (489) 14 cd03796 GT1_PIG-A_like This fa 100.0 8.7E-27 1.9E-31 253.6 26.0 288 280-686 1-291 (398) 15 cd03791 GT1_Glycogen_synthase_ 100.0 3E-26 6.5E-31 254.5 28.7 342 280-686 1-392 (476) 16 PRK14099 glycogen synthase; Pr 99.9 6.2E-26 1.3E-30 255.3 28.6 343 279-686 4-391 (485) 17 PRK10307 putative glycosyl tra 99.9 1.7E-25 3.6E-30 244.2 27.0 318 279-686 1-329 (412) 18 TIGR02149 glgA_Coryne glycogen 99.9 4.4E-25 9.6E-30 236.5 26.3 299 279-686 1-302 (388) 19 cd04962 GT1_like_5 This family 99.9 2E-24 4.4E-29 228.8 27.5 287 279-686 1-292 (371) 20 PLN02871 UDP-sulfoquinovose:DA 99.9 2.8E-23 6.1E-28 231.6 28.1 296 274-686 56-353 (465) 21 cd03805 GT1_ALG2_like This fam 99.9 2.2E-23 4.8E-28 223.6 25.4 313 279-686 1-321 (392) 22 cd03812 GT1_CapH_like This fam 99.9 6.8E-23 1.5E-27 215.4 26.4 286 280-686 1-288 (358) 23 PRK15427 colanic acid biosynth 99.9 7.6E-23 1.6E-27 225.1 26.8 202 405-686 116-326 (406) 24 cd03819 GT1_WavL_like This fam 99.9 1.6E-22 3.5E-27 212.3 26.5 277 300-686 8-286 (355) 25 PRK15179 Vi polysaccharide bio 99.9 1.3E-22 2.8E-27 236.1 28.2 382 202-686 203-613 (694) 26 cd04955 GT1_like_6 This family 99.9 6.5E-22 1.4E-26 208.0 28.8 287 280-686 1-290 (363) 27 PRK15484 lipopolysaccharide 1, 99.9 2.3E-22 4.9E-27 218.9 25.7 294 277-686 1-299 (380) 28 cd03821 GT1_Bme6_like This fam 99.9 8.8E-22 1.9E-26 203.6 27.0 300 280-686 1-303 (375) 29 KOG1111 N-acetylglucosaminyltr 99.9 2.8E-23 6.1E-28 219.2 15.4 287 279-686 1-293 (426) 30 TIGR03088 stp2 sugar transfera 99.9 5E-22 1.1E-26 212.8 25.0 286 280-686 3-294 (374) 31 cd03792 GT1_Trehalose_phosphor 99.9 1.7E-22 3.8E-27 217.3 21.5 209 405-686 83-295 (372) 32 cd05844 GT1_like_7 Glycosyltra 99.9 3.1E-22 6.7E-27 211.9 22.7 206 405-686 80-292 (367) 33 cd03818 GT1_ExpC_like This fam 99.9 1.4E-21 3.1E-26 212.4 27.5 289 309-686 14-322 (396) 34 PRK15490 Vi polysaccharide bio 99.9 1.1E-21 2.4E-26 221.1 24.9 310 296-686 168-494 (578) 35 cd03817 GT1_UGDG_like This fam 99.9 5.3E-21 1.1E-25 198.2 26.1 297 280-686 1-300 (374) 36 cd03802 GT1_AviGT4_like This f 99.9 1.1E-20 2.5E-25 196.7 27.4 263 279-686 1-266 (335) 37 PLN02846 digalactosyldiacylgly 99.9 3.8E-21 8.2E-26 214.6 25.0 299 278-686 4-322 (462) 38 PRK09922 UDP-D-galactose:(gluc 99.9 2.5E-21 5.5E-26 208.1 21.9 273 279-686 1-279 (359) 39 cd03795 GT1_like_4 This family 99.9 2.2E-20 4.7E-25 195.6 28.0 284 280-686 1-287 (357) 40 cd04951 GT1_WbdM_like This fam 99.9 2.6E-20 5.6E-25 195.3 26.2 282 280-686 1-284 (360) 41 cd03794 GT1_wbuB_like This fam 99.9 6.2E-20 1.4E-24 190.2 25.2 313 280-686 1-321 (394) 42 cd03801 GT1_YqgM_like This fam 99.9 2.6E-19 5.6E-24 182.8 27.9 296 280-686 1-297 (374) 43 cd03822 GT1_ecORF704_like This 99.9 3.1E-19 6.6E-24 186.1 28.2 282 280-686 1-291 (366) 44 cd03816 GT1_ALG1_like This fam 99.8 1E-19 2.2E-24 200.6 24.8 319 276-686 1-339 (415) 45 cd03811 GT1_WabH_like This fam 99.8 2.9E-19 6.3E-24 182.4 26.3 283 280-686 1-285 (353) 46 cd03809 GT1_mtfB_like This fam 99.8 8.2E-20 1.8E-24 190.3 21.9 292 280-686 1-294 (365) 47 cd03807 GT1_WbnK_like This fam 99.8 2.3E-19 5E-24 184.9 24.7 287 280-686 1-290 (365) 48 cd03806 GT1_ALG11_like This fa 99.8 1.1E-19 2.3E-24 200.9 23.3 300 301-686 13-346 (419) 49 cd03814 GT1_like_2 This family 99.8 2.3E-19 5E-24 186.4 24.0 286 280-686 1-288 (364) 50 PLN02275 transferase, transfer 99.8 5.5E-19 1.2E-23 191.7 27.1 289 299-686 13-331 (371) 51 cd03798 GT1_wlbH_like This fam 99.8 1.1E-18 2.3E-23 179.4 27.3 286 301-686 13-300 (377) 52 cd03813 GT1_like_3 This family 99.8 1.6E-20 3.6E-25 210.3 15.1 212 406-686 172-392 (475) 53 cd03799 GT1_amsK_like This is 99.8 1.5E-18 3.1E-23 181.7 26.7 199 405-686 77-283 (355) 54 cd03820 GT1_amsD_like This fam 99.8 1.5E-18 3.3E-23 177.1 25.8 272 280-686 1-274 (348) 55 cd03823 GT1_ExpE7_like This fa 99.8 1.5E-18 3.2E-23 179.7 24.8 279 280-686 1-285 (359) 56 cd03808 GT1_cap1E_like This fa 99.8 6.2E-18 1.3E-22 173.4 26.8 275 301-686 9-285 (359) 57 COG0297 GlgA Glycogen synthase 99.8 1.7E-18 3.7E-23 194.0 23.8 342 279-685 1-389 (487) 58 PLN02949 transferase, transfer 99.8 6.6E-18 1.4E-22 189.4 25.5 302 300-686 45-376 (463) 59 cd03793 GT1_Glycogen_synthase_ 99.8 3.7E-18 8.1E-23 192.9 23.4 167 405-599 146-326 (590) 60 TIGR03087 stp1 sugar transfera 99.8 7.7E-19 1.7E-23 191.3 17.0 207 405-686 102-320 (397) 61 cd03825 GT1_wcfI_like This fam 99.8 5.8E-18 1.3E-22 177.8 21.4 264 279-686 1-286 (365) 62 PRK10125 putative glycosyl tra 99.8 1.3E-17 2.7E-22 184.1 23.5 205 405-686 92-328 (405) 63 PLN02501 digalactosyldiacylgly 99.8 7.8E-18 1.7E-22 192.5 19.4 204 405-686 432-640 (794) 64 TIGR02918 accessory Sec system 99.7 8.9E-17 1.9E-21 182.0 19.4 203 405-686 209-414 (500) 65 cd04946 GT1_AmsK_like This fam 99.7 5.1E-16 1.1E-20 170.8 20.8 203 405-686 125-332 (407) 66 cd03804 GT1_wbaZ_like This fam 99.7 5.6E-16 1.2E-20 164.7 18.0 196 405-686 81-282 (351) 67 cd03785 GT1_MurG MurG is an N- 99.7 5.3E-15 1.1E-19 157.0 24.0 260 300-686 8-270 (350) 68 PRK00726 murG undecaprenyldiph 99.7 3.9E-15 8.4E-20 159.5 23.0 267 279-686 2-270 (357) 69 cd04949 GT1_gtfA_like This fam 99.6 7E-15 1.5E-19 157.3 20.2 201 406-686 98-300 (372) 70 TIGR01133 murG undecaprenyldip 99.6 3.8E-14 8.3E-19 150.3 23.4 255 301-686 10-268 (348) 71 cd03788 GT1_TPS Trehalose-6-Ph 99.6 3E-15 6.6E-20 167.8 15.6 236 406-686 130-382 (460) 72 PRK05749 3-deoxy-D-manno-octul 99.6 2.6E-13 5.7E-18 149.5 22.1 207 406-686 123-342 (425) 73 TIGR02400 trehalose_OtsA alpha 99.6 6.1E-14 1.3E-18 157.3 16.6 236 407-686 127-377 (456) 74 PRK13609 diacylglycerol glucos 99.5 1.4E-13 3E-18 149.2 17.5 189 405-686 102-291 (380) 75 PHA01630 putative group 1 glyc 99.5 5E-14 1.1E-18 151.8 13.2 178 413-686 52-231 (331) 76 PHA01633 putative glycosyl tra 99.5 2.4E-13 5.2E-18 146.9 15.6 123 522-686 116-245 (335) 77 PLN03063 alpha,alpha-trehalose 99.4 3.8E-12 8.3E-17 151.5 15.9 231 408-686 148-397 (797) 78 PF13579 Glyco_trans_4_4: Glyc 99.4 1.9E-12 4E-17 119.9 9.9 160 302-527 1-160 (160) 79 cd01635 Glycosyltransferase_GT 99.4 7.8E-11 1.7E-15 114.4 20.5 94 577-686 109-203 (229) 80 PRK14501 putative bifunctional 99.4 9.4E-12 2E-16 147.1 16.2 232 407-686 133-383 (726) 81 PLN02605 monogalactosyldiacylg 99.3 3E-11 6.6E-16 131.8 17.8 193 405-686 98-300 (382) 82 PF13439 Glyco_transf_4: Glyco 99.3 1.9E-11 4.2E-16 115.0 12.6 169 298-534 8-177 (177) 83 TIGR02094 more_P_ylases alpha- 99.3 6.4E-11 1.4E-15 136.9 19.1 258 402-685 156-500 (601) 84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 1.7E-10 3.8E-15 123.3 13.9 201 406-685 87-293 (363) 85 cd04950 GT1_like_1 Glycosyltra 99.2 3.6E-09 7.8E-14 115.1 22.4 196 404-686 99-300 (373) 86 PF08323 Glyco_transf_5: Starc 99.1 2E-10 4.4E-15 118.9 10.5 178 280-483 1-224 (245) 87 TIGR02398 gluc_glyc_Psyn gluco 99.1 1.8E-09 3.9E-14 122.1 18.3 233 407-686 132-403 (487) 88 TIGR00236 wecB UDP-N-acetylglu 99.1 8.4E-10 1.8E-14 119.2 14.5 203 406-686 85-291 (365) 89 PRK13608 diacylglycerol glucos 99.1 1.5E-09 3.2E-14 119.3 15.9 189 405-686 102-291 (391) 90 PF00534 Glycos_transf_1: Glyc 99.1 2.7E-10 5.9E-15 109.0 7.8 102 568-686 11-114 (172) 91 cd04299 GT1_Glycogen_Phosphory 99.0 1.4E-08 3E-13 120.2 19.9 257 402-684 243-588 (778) 92 PRK00025 lpxB lipid-A-disaccha 99.0 1.9E-08 4.1E-13 108.8 17.2 91 569-685 183-277 (380) 93 TIGR00215 lpxB lipid-A-disacch 98.9 6.2E-08 1.3E-12 106.7 18.4 192 405-685 87-283 (385) 94 PF13477 Glyco_trans_4_2: Glyc 98.8 2.2E-07 4.8E-12 86.2 15.6 127 306-482 11-139 (139) 95 COG0438 RfaG Glycosyltransfera 98.8 1.4E-07 3E-12 94.6 15.0 211 408-686 84-298 (381) 96 PLN03064 alpha,alpha-trehalose 98.7 3.2E-07 7E-12 110.5 17.3 232 408-685 232-480 (934) 97 PF09314 DUF1972: Domain of un 98.5 5E-06 1.1E-10 83.2 16.0 178 279-529 2-185 (185) 98 PRK09814 beta-1,6-galactofuran 98.4 7.9E-06 1.7E-10 88.0 15.9 159 406-661 62-226 (333) 99 KOG1387 Glycosyltransferase [C 98.4 1.4E-05 3.1E-10 85.7 16.7 211 405-686 148-378 (465) 100 PRK12446 undecaprenyldiphospho 98.1 0.00095 2.1E-08 73.0 25.4 110 299-435 9-119 (352) 101 TIGR03713 acc_sec_asp1 accesso 98.1 8.8E-05 1.9E-09 85.2 16.6 97 574-686 321-449 (519) 102 PF13692 Glyco_trans_1_4: Glyc 97.9 9E-06 2E-10 74.8 3.8 89 572-686 2-93 (135) 103 PF05693 Glycogen_syn: Glycoge 97.9 0.00018 4E-09 82.7 14.5 161 407-599 143-321 (633) 104 COG0707 MurG UDP-N-acetylgluco 97.5 0.015 3.2E-07 64.2 21.5 249 300-671 9-258 (357) 105 PF00982 Glyco_transf_20: Glyc 97.5 0.00081 1.7E-08 76.6 11.8 233 406-684 140-392 (474) 106 PLN02205 alpha,alpha-trehalose 97.4 0.0055 1.2E-07 74.5 18.5 232 409-684 203-455 (854) 107 PRK10117 trehalose-6-phosphate 97.3 0.0062 1.3E-07 69.3 17.0 231 408-684 124-371 (474) 108 PF12000 Glyco_trans_4_3: Gkyc 97.1 0.0063 1.4E-07 60.4 12.5 153 326-533 2-170 (171) 109 COG0380 OtsA Trehalose-6-phosp 96.4 0.16 3.4E-06 58.2 17.9 234 409-684 149-398 (486) 110 PF13528 Glyco_trans_1_3: Glyc 96.1 0.21 4.6E-06 52.7 16.5 35 405-442 92-126 (318) 111 TIGR03590 PseG pseudaminic aci 96.1 0.91 2E-05 48.1 20.9 88 572-686 171-258 (279) 112 PF08288 PIGA: PIGA (GPI ancho 96.0 0.027 5.8E-07 50.0 7.3 70 360-440 14-85 (90) 113 PF04007 DUF354: Protein of un 95.6 1.7 3.6E-05 47.8 20.8 31 405-438 81-111 (335) 114 cd03784 GT1_Gtf_like This fami 94.7 0.15 3.3E-06 55.8 9.6 34 405-440 102-135 (401) 115 TIGR02919 accessory Sec system 94.5 0.17 3.6E-06 57.5 9.7 78 588-686 291-369 (438) 116 TIGR03492 conserved hypothetic 94.1 2.1 4.5E-05 47.8 17.1 28 405-435 91-118 (396) 117 KOG2941 Beta-1,4-mannosyltrans 92.5 13 0.00027 41.3 19.1 293 326-675 39-350 (444) 118 TIGR03568 NeuC_NnaA UDP-N-acet 92.1 4.5 9.8E-05 44.6 15.8 35 405-439 91-126 (365) 119 TIGR00661 MJ1255 conserved hyp 91.9 0.87 1.9E-05 48.9 9.7 33 405-440 91-123 (321) 120 PF11997 DUF3492: Domain of un 91.0 0.34 7.4E-06 51.5 5.4 76 406-483 171-254 (268) 121 COG1519 KdtA 3-deoxy-D-manno-o 90.7 34 0.00074 38.8 21.4 96 572-685 231-339 (419) 122 KOG3742 Glycogen synthase [Car 87.1 0.31 6.6E-06 54.8 1.7 160 410-598 177-351 (692) 123 TIGR01426 MGT glycosyltransfer 85.5 3.8 8.3E-05 44.9 9.2 111 302-438 6-121 (392) 124 PF02350 Epimerase_2: UDP-N-ac 84.0 8.9 0.00019 42.2 11.2 195 406-673 66-266 (346) 125 PLN02448 UDP-glycosyltransfera 81.3 17 0.00038 41.4 12.6 119 279-435 11-134 (459) 126 PF03033 Glyco_transf_28: Glyc 73.2 5.6 0.00012 36.7 4.7 112 300-439 7-130 (139) 127 PF13844 Glyco_transf_41: Glyc 71.6 10 0.00022 43.6 7.2 101 566-685 279-381 (468) 128 PF08660 Alg14: Oligosaccharid 71.2 18 0.00039 35.9 8.0 115 301-436 7-127 (170) 129 PLN02208 glycosyltransferase f 63.9 1.1E+02 0.0024 34.9 13.5 119 279-434 5-131 (442) 130 PLN00414 glycosyltransferase f 57.3 2E+02 0.0042 33.0 14.0 37 279-340 5-41 (446) 131 PLN02554 UDP-glycosyltransfera 54.4 1.8E+02 0.0039 33.5 13.2 127 277-435 1-138 (481) 132 COG3914 Spy Predicted O-linked 53.3 59 0.0013 38.4 8.8 102 568-685 426-528 (620) 133 PLN03007 UDP-glucosyltransfera 53.1 1.8E+02 0.0039 33.5 13.0 37 279-340 6-42 (482) 134 PF02684 LpxB: Lipid-A-disacch 48.7 3.3E+02 0.0072 30.6 13.7 86 568-673 180-268 (373) 135 PF01975 SurE: Survival protei 47.5 1.3E+02 0.0027 30.7 9.4 37 279-341 1-37 (196) 136 KOG1050 Trehalose-6-phosphate 46.3 60 0.0013 39.6 7.9 142 520-684 240-392 (732) 137 PLN02173 UDP-glucosyl transfer 43.3 3.9E+02 0.0084 30.7 13.5 119 279-435 6-130 (449) 138 PLN02992 coniferyl-alcohol glu 43.3 3.1E+02 0.0068 31.8 12.9 120 280-435 7-130 (481) 139 COG4195 Phage-related replicat 42.6 20 0.00044 36.4 2.7 58 244-318 6-63 (208) 140 PF05693 Glycogen_syn: Glycoge 41.7 36 0.00078 40.5 4.9 54 631-685 427-490 (633) 141 PF04413 Glycos_transf_N: 3-De 41.6 1.1E+02 0.0024 30.7 7.9 67 406-487 94-162 (186) 142 COG1647 Esterase/lipase [Gener 41.2 2.9E+02 0.0062 29.3 10.8 44 392-437 71-114 (243) 143 PLN02562 UDP-glycosyltransfera 40.6 2E+02 0.0044 32.8 10.8 116 280-435 8-129 (448) 144 PLN02863 UDP-glucoronosyl/UDP- 39.8 4.6E+02 0.01 30.3 13.6 37 279-340 10-46 (477) 145 COG3171 Uncharacterized protei 37.5 28 0.00061 32.6 2.6 31 232-262 25-59 (119) 146 PLN02670 transferase, transfer 36.1 4.9E+02 0.011 30.1 13.0 120 280-435 8-136 (472) 147 PF06258 Mito_fiss_Elm1: Mitoc 36.1 4.6E+02 0.0099 28.6 12.1 34 405-438 55-90 (311) 148 PLN02764 glycosyltransferase f 35.5 4.2E+02 0.009 30.6 12.2 37 279-340 6-42 (453) 149 COG0381 WecB UDP-N-acetylgluco 35.4 7.1E+02 0.015 28.3 16.0 185 405-660 90-280 (383) 150 PLN03015 UDP-glucosyl transfer 34.0 7.1E+02 0.015 28.9 13.8 117 302-437 14-135 (470) 151 PRK12560 adenine phosphoribosy 34.0 1.1E+02 0.0024 30.8 6.5 31 405-435 49-79 (187) 152 PRK12342 hypothetical protein; 32.5 1.4E+02 0.0031 31.7 7.3 34 407-440 109-146 (254) 153 PHA03392 egt ecdysteroid UDP-g 32.1 3.8E+02 0.0083 31.2 11.3 30 405-436 134-164 (507) 154 PLN02534 UDP-glycosyltransfera 28.3 8.8E+02 0.019 28.2 13.4 36 280-340 10-45 (491) 155 PF11513 TA0956: Thermoplasma 28.3 48 0.001 30.0 2.4 30 247-276 24-53 (110) 156 PF05728 UPF0227: Uncharacteri 28.1 1.3E+02 0.0027 30.4 5.8 31 409-440 61-91 (187) 157 PRK13932 stationary phase surv 27.7 7.8E+02 0.017 26.3 12.3 33 405-437 89-132 (257) 158 PLN02210 UDP-glucosyl transfer 27.3 4.8E+02 0.01 29.9 11.0 37 279-340 9-47 (456) 159 PLN02410 UDP-glucoronosyl/UDP- 26.0 1E+03 0.022 27.3 13.2 116 279-435 8-131 (451) 160 KOG0853 Glycosyltransferase [C 25.9 98 0.0021 36.1 5.0 97 469-599 204-300 (495) 161 PRK03371 pdxA 4-hydroxythreoni 25.7 2E+02 0.0043 31.9 7.1 38 405-442 256-302 (326) 162 PRK13935 stationary phase surv 25.2 8.5E+02 0.018 26.0 11.9 34 405-438 84-128 (253) 163 PRK00232 pdxA 4-hydroxythreoni 25.0 2.4E+02 0.0051 31.3 7.6 182 207-442 101-303 (332) 164 PF08672 APC2: Anaphase promot 24.9 29 0.00063 28.8 0.5 36 5-40 13-51 (60) 165 cd07362 HPCD_like Class III ex 24.8 1.2E+02 0.0025 32.4 5.1 49 280-328 46-107 (272) 166 PRK09177 xanthine-guanine phos 24.7 1.4E+02 0.003 29.2 5.2 51 386-438 12-62 (156) 167 PLN02293 adenine phosphoribosy 24.1 1.7E+02 0.0037 29.5 5.9 30 406-435 61-90 (187) 168 PLN02152 indole-3-acetate beta 23.7 7.9E+02 0.017 28.3 11.8 114 301-435 13-132 (455) 169 cd04861 LigD_Pol_like LigD_Pol 23.5 5E+02 0.011 27.3 9.2 93 282-415 81-182 (227) 170 PRK03743 pdxA 4-hydroxythreoni 23.1 2.5E+02 0.0055 31.1 7.4 37 405-441 257-302 (332) 171 COG5452 Uncharacterized conser 22.0 1.5E+02 0.0032 29.5 4.7 78 226-323 80-167 (180) 172 cd04864 LigD_Pol_like_1 LigD_P 22.0 5.6E+02 0.012 27.0 9.2 93 282-414 83-182 (228) 173 PRK13933 stationary phase surv 21.4 1E+03 0.022 25.4 12.1 33 404-436 84-127 (253) 174 COG0496 SurE Predicted acid ph 21.0 8.3E+02 0.018 26.1 10.4 35 406-440 82-127 (252) 175 COG2236 Predicted phosphoribos 20.9 2E+02 0.0044 29.4 5.6 46 386-432 9-54 (192) 176 PF04844 Ovate: Transcriptiona 20.9 1.3E+02 0.0029 25.0 3.6 45 10-55 10-54 (59) 177 PF00205 TPP_enzyme_M: Thiamin 20.7 3.1E+02 0.0067 25.4 6.6 70 405-481 11-84 (137) 178 KOG3349 Predicted glycosyltran 20.5 4.7E+02 0.01 26.2 7.8 88 312-438 20-108 (170) 179 cd04865 LigD_Pol_like_2 LigD_P 20.4 6.2E+02 0.013 26.7 9.2 93 282-415 82-183 (228) 180 TIGR01768 GGGP-family geranylg 20.4 1E+02 0.0023 32.2 3.5 55 603-675 27-81 (223) 181 PRK12435 ferrochelatase; Provi 20.1 8E+02 0.017 26.8 10.5 35 408-442 140-186 (311) 182 PF06925 MGDG_synth: Monogalac 20.0 2.6E+02 0.0057 27.0 6.2 31 405-435 87-121 (169) No 1 >PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction:UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A. Probab=100.00 E-value=1.5e-188 Score=1518.91 Aligned_cols=550 Identities=76% Similarity=1.203 Sum_probs=475.1 Q ss_pred CCCcchHHHHHHHHhHhHHHHHHHHHHHHhcCCcccchhhHHHHHHhhhcCcccccccCCCcHHHHHhhcceeeecCCeE Q 005625 7 SRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFV 86 (687) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (687) ||++||+|+|+++|++||++|++||+||+++||+|||||||+++|+++|+++.++.++.+|+||++|++||||||.|||| T Consensus 1 tr~~s~~e~~~~~L~~~R~~l~~llsr~~~~gk~~l~r~~ll~ef~~~~~~~~~~~~~~~g~lg~ll~~tQEaIv~pp~v 80 (550) T PF00862_consen 1 TRSHSIRERVPDTLSQHRNELKRLLSRYVAQGKRYLLRHDLLDEFEAYCEDDKEKLFLLSGPLGELLRSTQEAIVLPPWV 80 (550) T ss_dssp -------GGGTTTGGGTTSHHHHHHHHHHHHHTSSEEEECHHHHHTHHHHSTTTGCCT--STHHHHHHTEEEEEECSSEE T ss_pred CcchhHHHHHHHHHHHhHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHhcccchhhcccchHHHHHHhcceeEecCCeE Confidence 79999999999999999999999999999999999999999999999997777778888999999999999999999999 Q ss_pred EEEEcCCCceEEEEEEecCcceeeecChHHHhhhhchhcccccCCCceeeeecccccCCCCCCCCCCCCCchhhhhhhhh Q 005625 87 AIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHL 166 (687) Q Consensus 87 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~f~~~~p~~~~~~~ig~g~~~l~~~l 166 (687) |||||||||+|||||||+++|+||+|||+|||+|||+|||++++++++||+||+|||++||+|++||||||||+|||||| T Consensus 81 ~lavRPrpg~WeyvRv~~~~L~vE~ltvseyL~fKE~LV~~~~~~~~vLElDf~PFn~~~Prlt~s~sIGnGv~FLNR~L 160 (550) T PF00862_consen 81 ALAVRPRPGVWEYVRVNVDDLSVEELTVSEYLKFKERLVDGSANDEFVLELDFEPFNASFPRLTDSSSIGNGVQFLNRHL 160 (550) T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEE-HHHHHHHHHHHHHSS-SSTTS-EEE-GGGHTTS----SGGGTTBHHHHHHHHH T ss_pred EEEEcCCCccEEEEEEEhhhCcceecCHHHHHHHHHHHcCCccCCCCeeeeecccccccCCCCCCcccccccHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcccCCCCCCchhHHHHHHhcccCCeeeeccccCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCccccCCcH Q 005625 167 SSSMFRNKDCLEPLLDFLRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGWGDTA 246 (687) Q Consensus 167 ~~~~~~~~~~~~~l~~~l~~~~~~g~~l~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~e~gwg~~~ 246 (687) |||||+|++++++||+|||.|+|+|++|||||||+|+++||+||++|++||+++|+||||++|+++||+||||||||||| T Consensus 161 Ssklf~d~e~~~~Ll~fL~~h~~~G~~Lmlndri~s~~~L~~aL~~A~~~L~~~p~~tpy~~f~~~~q~~Gfe~GWG~ta 240 (550) T PF00862_consen 161 SSKLFQDKESLEPLLDFLRVHNYNGQQLMLNDRIQSVSKLQSALRKAEEFLSKLPPDTPYSEFEHKLQELGFEPGWGDTA 240 (550) T ss_dssp HHHHTT-HHHHHHHHHHHHH-EETTEEBSB-TT--SHHHHHHHHHHHHHHHHHS-TT-BHHHHHHHHHHHTB-B-S-SBH T ss_pred HHHhcCChHHHHHHHHHHHHhccCCeEeeecCCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCCCcH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhcCCCcchHhHHhcCCCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhC Q 005625 247 EHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQ 326 (687) Q Consensus 247 ~r~~e~~~~l~~~l~~p~~~~le~f~~r~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~ 326 (687) +||+|||++|+|+||||||++||+||+||||+|+||++||||||+|+||+|+|||||||+||+||||||+++|..+|+.| T Consensus 241 ~rv~et~~lL~dll~aPdp~~LE~Fl~RiPmvf~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~ 320 (550) T PF00862_consen 241 ERVLETMHLLSDLLEAPDPSTLEKFLSRIPMVFNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQ 320 (550) T ss_dssp HHHHHHHHHHHHHHHS--HHHHHHHHHHS---SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHT T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHhhhcceeEEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCC Q 005625 327 GLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQG 406 (687) Q Consensus 327 Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~ 406 (687) |+++.|+|+|+||++|++.||+|++++|++.+++|++|+||||++.++++++|+|||++||||++|++++++++.+++++ T Consensus 321 gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~~~~i~~e~~~ 400 (550) T PF00862_consen 321 GLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWISRFDLWPYLEEFADDAEREILAELQG 400 (550) T ss_dssp T-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHHHHHHHHHHTS T ss_pred CCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccchhhchhhHHHHHHHHHHHHHHHhCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999 Q ss_pred CceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHH Q 005625 407 FPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 486 (687) Q Consensus 407 ~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi 486 (687) +||+|||||+|||++|+++|+++|||+|+|+|+|+++||++++++|++++.+|||||||+||+++||+||+|||||+||| T Consensus 401 ~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI 480 (550) T PF00862_consen 401 KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEI 480 (550) T ss_dssp --SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHH T ss_pred CCcEEEeccCcchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcC Q 005625 487 AGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFD 556 (687) Q Consensus 487 ~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~ 556 (687) +|+++++|||++|.+||||||||||+||++|+|||||||||+|.++||||+++++|++++|++|+++||+ T Consensus 481 ~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~PGad~~iyFpyt~~~~Rl~~~~~~ie~Llfs 550 (550) T PF00862_consen 481 AGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSPGADESIYFPYTEKERRLTSLHPEIEELLFS 550 (550) T ss_dssp HB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE------TTTS--TT-TTTS-GGGHHHHHHHHH- T ss_pred cCCccccCCccchhhcchHhHHhhhccccccCCcccccCCCCCcceecCCccccccchhhhHHHHHHhcC Confidence 9999999999999999999999999999999999999999999999999999999999999999999873 No 2 >PLN00142 sucrose synthase Probab=100.00 E-value=2.9e-183 Score=1574.46 Aligned_cols=686 Identities=81% Similarity=1.263 Sum_probs=657.7 Q ss_pred CCCCCCCCCcchHHHHHHHHhHhHHHHHHHHHHHHhcCCcccchhhHHHHHHhhhcCcccccccCCCcHHHHHhhcceee Q 005625 1 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAI 80 (687) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 80 (687) |++++|+|++||+|+++++|++|||+|++||+||+++||++||+|||+++|+++++++.++.++.+|+||++|++||||| T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (815) T PLN00142 2 AAAPVLTRSHSIRERVPDALSQHRNELKALLSRYVAQGKGILQPHQLIDELEAVIDDDEERKKLLDGPFGDILRSTQEAI 81 (815) T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhhhhhhhhhhccCcHHHHHHhhhhhh Confidence 56789999999999999999999999999999999999999999999999999987777788899999999999999999 Q ss_pred ecCCeEEEEEcCCCceEEEEEEecCcceeeecChHHHhhhhchhcccccCCCceeeeecccccCCCCCCCCCCCCCchhh Q 005625 81 VLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQ 160 (687) Q Consensus 81 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~f~~~~p~~~~~~~ig~g~~ 160 (687) |.|||||||||||||+|||||||++||+||+|||+|||+|||+|||++.+++++|||||+|||++|||||+||||||||+ T Consensus 82 ~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~yl~~ke~~~~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~ 161 (815) T PLN00142 82 VLPPFVALAVRPRPGVWEYVRVNVSELSVEELTVSEYLKFKEELVDGSWNDNFVLELDFEPFNASFPRPTLSSSIGNGVQ 161 (815) T ss_pred ccCCeeEEEEcCCCcceEEEEEEhhhCceeeecHHHhhhhhHhhcCcccCCCceEEEecccccccCCCCCCcccccccHH Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999 Q ss_pred hhhhhhhcccCCCCCCchhHHHHHHhcccCCeeeeccccCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCcc Q 005625 161 FLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEK 240 (687) Q Consensus 161 ~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~g~~l~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~e~ 240 (687) |||||||||||+|+++++|||||||+|+|+|++|||||||+|+++||+||++|++||+++|+||||++|+++||+||||| T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~ 241 (815) T PLN00142 162 FLNRHLSSKLFRDKESLEPLLDFLRAHNHKGETLMLNDRIQTLSKLQSALRKAEEYLSKLPKDTPYSEFEHRFQELGLEK 241 (815) T ss_pred HHHHHHHHhhccCchhhhhHHHHHHHhhcCCceeeecCCCCCHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHhCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCCcHHHHHHHHHHHHHhhcCCCcchHhHHhcCCCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH Q 005625 241 GWGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEML 320 (687) Q Consensus 241 gwg~~~~r~~e~~~~l~~~l~~p~~~~le~f~~r~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~ 320 (687) ||||||+||+|||++|+|+||||||++||+||+||||+|||+|+|+||||+|.+++|+||||||+|||+|||||||++|. T Consensus 242 gwg~~~~~~~~~~~~l~~~~~~p~~~~~e~f~~~~p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~ 321 (815) T PLN00142 242 GWGDTAERVLETIHLLLDLLQAPDPSTLEKFLGRIPMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEML 321 (815) T ss_pred CcCccHHHHHHHHHHHHHHHhCCChhHHHHHHhhhhHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHH Q 005625 321 LRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEI 400 (687) Q Consensus 321 ~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L 400 (687) .+|+++||+++|+|+|+||+++++.|++|++++|.+.++++++|+|+||++.++++++|+||+++||||++|+.++.+++ T Consensus 322 ~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~~~~ 401 (815) T PLN00142 322 LRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAASEI 401 (815) T ss_pred HHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999977899999999999999999999999998 Q ss_pred HHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEe Q 005625 401 TAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIIT 480 (687) Q Consensus 401 ~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IIt 480 (687) .++.+++|||||+|||++|++|.++|+++|||+|+|+|++++.|+.+++.+|++.+.+|++++|+++|.++|++||+||| T Consensus 402 ~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIa 481 (815) T PLN00142 402 LAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIIT 481 (815) T ss_pred HHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHh Confidence 77677899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcc Q 005625 481 STYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQN 560 (687) Q Consensus 481 sS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~ 560 (687) +|+||++++++.++||++|.+||||+||++++||+++++|++|||||+|.+.|+|++.++.|.+.++..+++.+|++.+. T Consensus 482 sT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~ 561 (815) T PLN00142 482 STYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQN 561 (815) T ss_pred CcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHH Confidence 99999999999999999999999999999999999999999999999999999999988788888888899999998888 Q ss_pred cccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCC Q 005625 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (687) Q Consensus 561 ~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~ 640 (687) .++.+++.++++|+|++||||+++||++.||+||+++.+++++++|+||||+.++..+.+.++.+++++|+++++++++. T Consensus 562 ~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~ 641 (815) T PLN00142 562 DEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK 641 (815) T ss_pred HHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC Confidence 88888777888999999999999999999999999987777789999999865445556677777788999999999999 Q ss_pred CcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 641 GQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 641 ~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++|+|+|.+.+..+.+++|+++++++|+||+||++ |||+++|||.+ T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA 688 (815) T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMT 688 (815) T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHH Confidence 99999997666778899999888778999999999 99999999975 No 3 >TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. Probab=100.00 E-value=2.8e-178 Score=1532.48 Aligned_cols=663 Identities=73% Similarity=1.178 Sum_probs=638.2 Q ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHHHhhhcCcccccccCCCcHHHHHhhcceeeecCCeEEEEEcCCCceEEEEEEe Q 005625 24 RNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVN 103 (687) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 103 (687) |++|++||+||+++||++||+|||+++|+++|.++.++.++.+|+||++|++||||||.|||||||||||||+||||||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~~~~~~~~~~r~~~~~~~~~~~~ 80 (784) T TIGR02470 1 RAELRQLLSRYVSQGKRYLLRHQLLDEFEQYCSDADKEKKLSESALGKLIFSTQEAIVLPPWVALAVRPRIGVWEYVRVN 80 (784) T ss_pred ChHHHHHHHHHHhcCCCcccHHHHHHHHHHHhhhhhhhhhhccCcHHHHHHhhhhheecCCeeEEEEcCCCcceEEEEEE Confidence 78999999999999999999999999999999776667889999999999999999999999999999999999999999 Q ss_pred cCcceeeecChHHHhhhhchhcccccCCCceeeeecccccCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCchhHHHH Q 005625 104 VYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDF 183 (687) Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~f~~~~p~~~~~~~ig~g~~~l~~~l~~~~~~~~~~~~~l~~~ 183 (687) ++||+||+||++|||+|||+|||++.+++++|||||+|||++|||||+||||||||+|||||||||||+|++++++|||| T Consensus 81 ~~~l~~~~~~~~~yl~~ke~~~~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~~~~r~~s~~~~~~~~~~~~~~~~ 160 (784) T TIGR02470 81 VEELSVEELTISEYLDFKEQLVNGHPNDGFVLELDFEPFNASFPRPSDSKSIGNGVQFLNRHLSSKLFQDPESMEPLLNF 160 (784) T ss_pred hhhCceeeecHHHHhhhhHhhcCcccCCCceEEEecccccccCCCCCCcccccccHHHHHHHHHHHhcCCchhhhhHHHH Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999 Q ss_pred HHhcccCCeeeeccccCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCccccCCcHHHHHHHHHHHHHhhcCC Q 005625 184 LRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGWGDTAEHVLEMMHLLLDILQAP 263 (687) Q Consensus 184 l~~~~~~g~~l~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~e~gwg~~~~r~~e~~~~l~~~l~~p 263 (687) ||.|+|+|++|||||||+|+++||+||++|++||+++|+||||++|+++||+|||||||||||+||+|||++|+|||||| T Consensus 161 l~~~~~~g~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~gwg~~~~~~~~~~~~l~~~~~~p 240 (784) T TIGR02470 161 LRVHNYNGIQLMINDRIQSVSHLQSQLRKAEEFLSALPPDTPYSEFEFELQELGFEPGWGDTAQRVLETLHLLDDLLEAP 240 (784) T ss_pred HHHhccCCceeeecCCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHhCCCCCcCccHHHHHHHHHHHHHHHhCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcchHhHHhcCCCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCC Q 005625 264 DPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPD 343 (687) Q Consensus 264 ~~~~le~f~~r~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~ 343 (687) ||++||+||+||||+|||+|+|+||||+|.+++|+||||||+|||++|||||+++|.++|+++||+++|+|+|+||++++ T Consensus 241 ~~~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~ 320 (784) T TIGR02470 241 DPSVLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPD 320 (784) T ss_pred ChhHHHHHHhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCccccccccccCCCCeEEEEecCCCCcc-ccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHH Q 005625 344 AKGTTCNQRLERVSGTEHTHILRVPFRSEKG-ILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVA 422 (687) Q Consensus 344 ~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~-~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA 422 (687) +.+++|++++|++.+++|++|+|+|+++.++ ++++|++|+++||||++|+.++.+++.++.+++||+||+|||++|++| T Consensus 321 ~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva 400 (784) T TIGR02470 321 AEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA 400 (784) T ss_pred ccccccccccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH Confidence 8899999999999999999999999999877 799999999999999999999999987766789999999999999999 Q ss_pred HHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccc Q 005625 423 SLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAF 502 (687) Q Consensus 423 ~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f 502 (687) .++|+++|||+|+|+|++++.|+..++.+|.+.+..|++++||++|.++|+.||+|||+|+||++++++.++||++|.+| T Consensus 401 ~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~f 480 (784) T TIGR02470 401 SLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAF 480 (784) T ss_pred HHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccc Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999 Q ss_pred cccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCC Q 005625 503 TLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD 582 (687) Q Consensus 503 ~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLd 582 (687) |||+||++++||+++++|++|||||||++.|+|++.+..|.+.+++.+++++|++++++++.|++.++++|+|++||||+ T Consensus 481 t~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~ 560 (784) T TIGR02470 481 TMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLD 560 (784) T ss_pred cccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCC Confidence 99999999999999999999999999999999999877777777788999999999999999988889999999999999 Q ss_pred cCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHh Q 005625 583 HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYI 662 (687) Q Consensus 583 p~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~a 662 (687) ++||++.||+||++++.+++.++|+||||+.++.++.|.++.+++++|+++++++|+.++|+|+|++.++.+++++|+++ T Consensus 561 ~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~i 640 (784) T TIGR02470 561 RVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYI 640 (784) T ss_pred ccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHh Confidence 99999999999998877777899999998766566778888888999999999999999999999766888999999998 Q ss_pred hcCCcEEEEcCCC-CCchhhhcccC Q 005625 663 ADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 663 ad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ||++|+||+||++ |||+|+|||.+ T Consensus 641 Ad~adVfV~PS~~EpFGLvvLEAMA 665 (784) T TIGR02470 641 ADTKGIFVQPALYEAFGLTVLEAMT 665 (784) T ss_pred hccCcEEEECCcccCCCHHHHHHHH Confidence 8888999999999 99999999974 No 4 >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. Probab=100.00 E-value=5.2e-56 Score=523.66 Aligned_cols=382 Identities=26% Similarity=0.440 Sum_probs=299.3 Q ss_pred cceEEEEccCCCCCCCCC-CCC-CCCCchhHHHHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEeccCCCC-CCCccccc Q 005625 278 VFNVVILSPHGYFGQANV-LGL-PDTGGQVVYILDQVRALENEMLLRIKRQG--LDISPKILIVTRLIPDA-KGTTCNQR 352 (687) Q Consensus 278 ~~rIliiS~Hg~f~~~~v-lG~-PdtGGqvvyVldlarAL~~~l~~~l~~~G--h~~~~~V~VlTr~ip~~-~g~~~~q~ 352 (687) .++|++||+||++.+.|+ +|+ +|||||++||++||+||++ .| | +|+|+||.+.++ .++.|.++ T Consensus 169 ~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~--------~~gv~----~Vdl~TR~~~~~~~~~~y~~p 236 (1050) T TIGR02468 169 KLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGS--------MPGVY----RVDLLTRQVSSPDVDWSYGEP 236 (1050) T ss_pred ceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHh--------CCCCC----EEEEEeCCcCccccccccCCc Confidence 468999999999998887 885 9999999999999999999 66 5 999999998654 35668888 Q ss_pred ccccc------------CCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHh-------c----CCCce Q 005625 353 LERVS------------GTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAE-------L----QGFPD 409 (687) Q Consensus 353 lE~i~------------~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~-------~----~~~PD 409 (687) .|.+. ..+|++|+|||+++.. +|++++.+|||+..|++.++..+.+. . ...|| T Consensus 237 ~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~----~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pD 312 (1050) T TIGR02468 237 TEMLTPRSSENDGDEMGESSGAYIIRIPFGPRD----KYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPY 312 (1050) T ss_pred cccccccccccccccccCCCCeEEEEeccCCCC----CCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCC Confidence 75553 4569999999999873 47889999999999999998876531 1 12499 Q ss_pred EEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCC----CchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHH Q 005625 410 FIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPD----SDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQE 485 (687) Q Consensus 410 LIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~----s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qE 485 (687) |||+|||++|.+|.++++.+|||+|+|+|++++.|+.. ...+|..++..|++++|+.+|+.+++.||+|||+|.+| T Consensus 313 vIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE 392 (1050) T TIGR02468 313 VIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQE 392 (1050) T ss_pred EEEECcchHHHHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHH Confidence 99999999999999999999999999999998877641 23356777788999999999999999999999999999 Q ss_pred Hhcccccccccccccccccccccee--------ecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcC- Q 005625 486 IAGTKNTVGQYESHTAFTLPGLYRV--------VHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFD- 556 (687) Q Consensus 486 i~~~~~~v~qyes~~~f~lp~Lyrv--------v~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~- 556 (687) +.+ ||..|.+|+ |.|||+ |++.+++.+|++|||||||++.|.|......+.. ...+..... T Consensus 393 ~~e------q~~lY~~~~-~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~---~~~~~~~~~~ 462 (1050) T TIGR02468 393 IEE------QWGLYDGFD-VILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGET---EGNEEHPAKP 462 (1050) T ss_pred HHH------HHHHhccCC-chhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchh---cccccccccc Confidence 874 777777777 665544 4444566789999999999999998653322100 000000000 Q ss_pred -CCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHH Q 005625 557 -PEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK 635 (687) Q Consensus 557 -~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~ 635 (687) +..+.+..+++.++++|+|+++||++++||++.||+||+.++.+++.+++.+++|+.+..+.......++..++.++++ T Consensus 463 ~~~~~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~ 542 (1050) T TIGR02468 463 DPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLID 542 (1050) T ss_pred cchhhHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHH Confidence 0011233466778899999999999999999999999998876555566644444333111111122345677889999 Q ss_pred HcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 636 TYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 636 elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++++.++|.|+|+ +++++++++|+.|+.++|+||+||++ |||+++|||.+ T Consensus 543 ~lgL~g~V~FlG~-v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMA 593 (1050) T TIGR02468 543 KYDLYGQVAYPKH-HKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAA 593 (1050) T ss_pred HhCCCCeEEecCC-CCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHH Confidence 9999999999995 89999999999876567899999999 99999999974 No 5 >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. Probab=100.00 E-value=8.2e-43 Score=385.62 Aligned_cols=355 Identities=28% Similarity=0.507 Sum_probs=254.4 Q ss_pred ceEEEEccCCCCCCCC-CCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCC-CCcccccccc Q 005625 279 FNVVILSPHGYFGQAN-VLGL-PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAK-GTTCNQRLER 355 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~-vlG~-PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~-g~~~~q~lE~ 355 (687) .||+++|+||+|+|.+ .+|. |++||+++|+.+|+++|.+ +|| ..+|.|+|+..++.. ++.+..+.+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~GG~~~~v~~La~~L~~--------~G~--~~~V~v~t~~~~~~~~~~~~~~~~~~ 70 (439) T TIGR02472 1 LYLLLLSLHGLIRGHDLELGRDADTGGQTKYVLELARALAR--------RSE--VEQVDLVTRLIKDAKVSPDYAQPIER 70 (439) T ss_pred CeEEEEeCCcCCCCCccccCCCCCCCCcchHHHHHHHHHHh--------CCC--CcEEEEEeccccCcCCCCccCCCeeE Confidence 3799999999999988 5774 9999999999999999988 785 228999998755421 1233334433 Q ss_pred ccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 356 i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) + .+|+.|+|+|+.+. .|.++..+|+|+..|...+.+.+.+ ...+|||||+|++.++++|.++++..++|+|+ T Consensus 71 ~--~~gv~v~r~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~ 142 (439) T TIGR02472 71 I--APGARIVRLPFGPR-----RYLRKELLWPYLDELADNLLQHLRQ-QGHLPDLIHAHYADAGYVGARLSRLLGVPLIF 142 (439) T ss_pred e--CCCcEEEEecCCCC-----CCcChhhhhhhHHHHHHHHHHHHHH-cCCCCCEEEEcchhHHHHHHHHHHHhCCCEEE Confidence 3 25899999998764 3555667889988888777766643 23479999999999999999999999999999 Q ss_pred EecCCccccCC---CCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeec Q 005625 436 IAHALEKTKYP---DSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVH 512 (687) Q Consensus 436 T~HaL~~~ky~---~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~ 512 (687) |.|++...+.. ..+..+..+...|++..++..|+.+++.||.|||+|.+++.. ++..+ . T Consensus 143 t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~------~~~~~---------~--- 204 (439) T TIGR02472 143 TGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETLAHASLVITSTHQEIEE------QYALY---------D--- 204 (439) T ss_pred ecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHH------HHHhc---------c--- Confidence 99987533211 111222223333455555566889999999999998776542 22211 0 Q ss_pred ccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHH Q 005625 513 GIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVE 592 (687) Q Consensus 513 gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVe 592 (687) ++...|+.|||||||.+.|.|......+. .++...+ .++..+++++|+++||+.+.||++.|++ T Consensus 205 --~~~~~ki~vIpnGvd~~~f~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~~i~~vGrl~~~Kg~~~li~ 268 (439) T TIGR02472 205 --SYQPERMQVIPPGVDLSRFYPPQSSEETS-EIDNLLA-------------PFLKDPEKPPILAISRPDRRKNIPSLVE 268 (439) T ss_pred --CCCccceEEECCCcChhhcCCCCccccch-hHHHHHH-------------hhccccCCcEEEEEcCCcccCCHHHHHH Confidence 11234999999999999998754321110 0111111 2234567889999999999999999999 Q ss_pred HHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEc Q 005625 593 CYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQV 672 (687) Q Consensus 593 Afa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlP 672 (687) ||+++..+.+..++++++|+.+..+.......+..+++.++++++++.++|+|+|+ +++++++++|+.++..+|+||+| T Consensus 269 A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~-~~~~~~~~~~~~a~~~~Dv~v~p 347 (439) T TIGR02472 269 AYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKH-HRPDDVPELYRLAARSRGIFVNP 347 (439) T ss_pred HHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCC-CCHHHHHHHHHHHhhcCCEEecc Confidence 99876544444667655554332222223333445667788999999999999995 78999999999764456999999 Q ss_pred CCC-CCchhhhcccC Q 005625 673 YVH-PIPLNFLPSYK 686 (687) Q Consensus 673 Sl~-gFGLviLEa~~ 686 (687) |.+ |||++++||.+ T Consensus 348 S~~E~fg~~~lEAma 362 (439) T TIGR02472 348 ALTEPFGLTLLEAAA 362 (439) T ss_pred cccCCcccHHHHHHH Confidence 999 99999999975 No 6 >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Probab=100.00 E-value=4.2e-44 Score=394.80 Aligned_cols=385 Identities=39% Similarity=0.526 Sum_probs=335.5 Q ss_pred eccccCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCccccCCcHHHHHHHHHHHHHhhcCCCcchHhHHhcC Q 005625 195 MLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGWGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGR 274 (687) Q Consensus 195 ~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~e~gwg~~~~r~~e~~~~l~~~l~~p~~~~le~f~~r 274 (687) |.||++++...+|+++.+|+..++.. .+||+..|.+.++..++++|||.++.+|.+++++++ T Consensus 1 ~~~~~~~~~~~~qk~~~~~m~~~~~~-~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s----------------- 62 (495) T KOG0853|consen 1 MTNDSSSNISELQKVLWKAMIEKSLL-VSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS----------------- 62 (495) T ss_pred CcchhhhHHHHhhhhhhhhhhhhhcc-cccccccchhheeeccccccCchHHHhHHHHHHHHh----------------- Confidence 78999999999999999999999999 999999999999999999999999999999999998 Q ss_pred CCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccc Q 005625 275 LPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLE 354 (687) Q Consensus 275 ~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE 354 (687) +|. +||.||+||||+|+++++++|+.+|..+..+++.++.+.|.|+++.+|.+.| +.++ T Consensus 63 ----------------~~~-~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~----~~~~ 121 (495) T KOG0853|consen 63 ----------------GQD-VLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWLPRAMG----QFLE 121 (495) T ss_pred ----------------ccc-ccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeecCcccc----hhhh Confidence 344 9999999999999999999999999999999999988899999999988754 4566 Q ss_pred cccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEE Q 005625 355 RVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQC 434 (687) Q Consensus 355 ~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V 434 (687) ...++.+++|+|+|++. +..|+ +++||+++.|+ .+...+.+.+++ ||++|+|||+++..+.+++.++|++.+ T Consensus 122 ~~~~~~~~~il~~~~~~----~~k~~--~~~d~~i~d~~-~~~~~l~~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~ 193 (495) T KOG0853|consen 122 QVAGCAYLRILRIPFGI----LFKWA--EKVDPIIEDFV-SACVPLLKQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKV 193 (495) T ss_pred hhhccceeEEEEeccch----hhhhh--hhhceeecchH-HHHHHHHHHhcC-CcccceeEEeccchHHHhccccCccce Confidence 67778899999999954 34676 78999999998 667777787777 999999999999999999999999999 Q ss_pred EEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccc-cceeecc Q 005625 435 TIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPG-LYRVVHG 513 (687) Q Consensus 435 ~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~-Lyrvv~g 513 (687) .+.|++++.+++.++.+|+.+...|++++||+++.+.|+++| ++++++|++++.+..++|+++..|++|. ++++|+| T Consensus 194 l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d--~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~ 271 (495) T KOG0853|consen 194 LYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSD--ITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSG 271 (495) T ss_pred eehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCC--cceeeccccchhccccccccchhcccccceeeeecc Confidence 999999999999999999999999999999999999999999 9999999999999999999999999998 9999999 Q ss_pred cccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHH Q 005625 514 IDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVEC 593 (687) Q Consensus 514 i~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeA 593 (687) ++++.+++|+++||.|.+.+.+.-. .++..+. + T Consensus 272 ~d~~~~siN~~~pgkd~~l~l~a~~------~~~~~i~-------------------~---------------------- 304 (495) T KOG0853|consen 272 IDRFFPSINRFEPGKDQDLALPAFT------LLHDSIP-------------------E---------------------- 304 (495) T ss_pred cceEeeeeeecCCCCCceeehhhHH------hhhcccC-------------------C---------------------- Confidence 9999999999999999998887211 1111110 0 Q ss_pred HhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEc-CcccCcccHHHHHHHhhcCCcEEEEc Q 005625 594 YGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI-AAQTNRARNGELYRYIADTKGAFVQV 672 (687) Q Consensus 594 fa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~fl-G~~l~~~dl~elYr~aad~~dVFVlP 672 (687) . .....+++++| +.+ .++.+.|+.+++++|++++++|++.++++|. - +.++.+. |++|||+..+|++| T Consensus 305 ----~-~~~~~hl~~~g-~~G-~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~-s~~~~~~---yrl~adt~~v~~qP 373 (495) T KOG0853|consen 305 ----P-SISSEHLVVAG-SRG-YDERDSENVEYLKELLSLIEEYDLLGQFVWFLP-STTRVAK---YRLAADTKGVLYQP 373 (495) T ss_pred ----C-CCCceEEEEec-CCC-ccccchhhHHHHHHHHHHHHHhCccCceEEEec-CCchHHH---HHHHHhcceEEecC Confidence 0 11234555544 211 5577889999999999999999997666555 5 4555444 99999999999999 Q ss_pred CCCCCchhhhcccC Q 005625 673 YVHPIPLNFLPSYK 686 (687) Q Consensus 673 Sl~gFGLviLEa~~ 686 (687) +.-.||+|+|||.+ T Consensus 374 a~E~FGiv~IEAMa 387 (495) T KOG0853|consen 374 ANEHFGIVPIEAMA 387 (495) T ss_pred CCCCccceeHHHHh Confidence 97799999999964 No 7 >PRK00654 glgA glycogen synthase; Provisional Probab=100.00 E-value=3.6e-31 Score=295.34 Aligned_cols=337 Identities=18% Similarity=0.178 Sum_probs=210.2 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccc--ccccc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQ--RLERV 356 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q--~lE~i 356 (687) |||+++|++.+. ...+||+..+|.+|+++|.+ +|| +|.|+|+..+..... ..+ ....+ T Consensus 1 m~i~~vs~e~~P-------~~k~GGl~~~v~~L~~~L~~--------~G~----~V~v~~p~y~~~~~~-~~~~~~~~~~ 60 (466) T PRK00654 1 MKILFVASECAP-------LIKTGGLGDVVGALPKALAA--------LGH----DVRVLLPGYPAIREK-LRDAQVVGRL 60 (466) T ss_pred CeEEEEEccccc-------CcccCcHHHHHHHHHHHHHH--------CCC----cEEEEecCCcchhhh-hcCceEEEEe Confidence 699999999531 23599999999999999988 899 999999875432100 000 00011 Q ss_pred ---------cCCCCeEEEEecCCCCccccccccccccchhhH---HH---HHHHHHHHHHHhcCCCceEEEeCCCChhHH Q 005625 357 ---------SGTEHTHILRVPFRSEKGILRQWISRFDVWPYL---ET---FTEDVGSEITAELQGFPDFIIGNYSDGNLV 421 (687) Q Consensus 357 ---------~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~L---e~---f~~~~~~~L~~~~~~~PDLIH~Hys~aglv 421 (687) ...+|+++++++... +..+..++.|. ++ |...++..+ +.+..+|||||+|+|.++++ T Consensus 61 ~~~~~~~~~~~~~gv~v~~v~~~~-------~~~~~~~y~~~d~~~r~~~f~~~~~~~~-~~~~~~pDiiH~h~w~~~~~ 132 (466) T PRK00654 61 DLFTVLFGHLEGDGVPVYLIDAPH-------LFDRPSGYGYPDNGERFAFFSWAAAEFA-EGLDPRPDIVHAHDWHTGLI 132 (466) T ss_pred eeEEEEEEeEEcCCceEEEEeCHH-------HcCCCCCCCCcChHHHHHHHHHHHHHHH-HhcCCCCceEEECCcHHHHH Confidence 012478888887521 22233344432 22 333444444 33457999999999999999 Q ss_pred HHHHHHcC-----CCcEEEEecCCccccCCC------Cchhhhhhc-ccccccchhHHHHHHHhcCCEEEecCHHHHhcc Q 005625 422 ASLLAYKM-----GITQCTIAHALEKTKYPD------SDIYWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIAGT 489 (687) Q Consensus 422 A~llAr~l-----gVP~V~T~HaL~~~ky~~------s~l~w~~~~-~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~ 489 (687) |.++++.+ ++|+|+|+|++....... .++.|..+. ....+..++...+.+++.||.|||+|...... T Consensus 133 ~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~e- 211 (466) T PRK00654 133 PALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYARE- 211 (466) T ss_pred HHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHH- Confidence 99998763 899999999986432110 011111100 01111122344567899999999998643221 Q ss_pred ccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHH----------hhhhhhhhhhhhhcCCCc Q 005625 490 KNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK----------RLTALHGSIEQLLFDPEQ 559 (687) Q Consensus 490 ~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~----------r~~~l~~~i~~ll~~~~~ 559 (687) ....+. ++.|.++++ ....|+.+||||||.+.|.|..+... .....+..+++. T Consensus 212 --i~~~~~---~~gl~~~~~------~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~------ 274 (466) T PRK00654 212 --ITTPEF---GYGLEGLLR------ARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQER------ 274 (466) T ss_pred --hccccC---CcChHHHHH------hcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHH------ Confidence 001110 111211111 11349999999999999988543100 000000111111 Q ss_pred ccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC Q 005625 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (687) Q Consensus 560 ~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL 639 (687) .+. .+++.|+|+++||++++||++.|++|++++.. ++++|+|+|++. .+ ..+++++++++++ T Consensus 275 ----~gl-~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~--~~~~lvivG~g~-------~~---~~~~l~~l~~~~~- 336 (466) T PRK00654 275 ----FGL-PDDDAPLFAMVSRLTEQKGLDLVLEALPELLE--QGGQLVLLGTGD-------PE---LEEAFRALAARYP- 336 (466) T ss_pred ----hCC-CCCCCcEEEEeeccccccChHHHHHHHHHHHh--cCCEEEEEecCc-------HH---HHHHHHHHHHHCC- Confidence 121 12468999999999999999999999998754 368999988541 22 2346777888886 Q ss_pred CCcEE-EcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 640 DGQFR-WIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 640 ~~~V~-flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++|+ ++|+ +.+....+|+.+ |+||+||++ |||++++||.+ T Consensus 337 -~~v~~~~g~--~~~~~~~~~~~a----Dv~v~PS~~E~~gl~~lEAma 378 (466) T PRK00654 337 -GKVGVQIGY--DEALAHRIYAGA----DMFLMPSRFEPCGLTQLYALR 378 (466) T ss_pred -CcEEEEEeC--CHHHHHHHHhhC----CEEEeCCCCCCchHHHHHHHH Confidence 4565 4674 455567788754 999999999 99999999975 No 8 >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. Probab=99.97 E-value=8.2e-30 Score=276.02 Aligned_cols=320 Identities=21% Similarity=0.244 Sum_probs=215.7 Q ss_pred EEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCC Q 005625 281 VVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTE 360 (687) Q Consensus 281 IliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~ 360 (687) |++++.|+. +.-..++-+.||.++|+.+++++|.+ +|| +|+|+|+..+...+ +...+ .+ T Consensus 1 ~~~~~~~~~--~~~~~~~~~~GG~e~~v~~la~~L~~--------~G~----~V~v~~~~~~~~~~-----~~~~~--~~ 59 (405) T TIGR03449 1 VAMISMHTS--PLQQPGTGDAGGMNVYILETATELAR--------RGI----EVDIFTRATRPSQP-----PVVEV--AP 59 (405) T ss_pred CeEEeccCC--ccccCCCcCCCCceehHHHHHHHHhh--------CCC----EEEEEecccCCCCC-----Ccccc--CC Confidence 578888862 12233444569999999999999988 899 99999975332211 11111 24 Q ss_pred CeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCC Q 005625 361 HTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHAL 440 (687) Q Consensus 361 ~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL 440 (687) ++++++++..+..+. +...+..+...|.....+.+++....+||+||+|++.++++|.++++..++|+|+|.|++ T Consensus 60 ~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~ 134 (405) T TIGR03449 60 GVRVRNVVAGPYEGL-----DKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTL 134 (405) T ss_pred CcEEEEecCCCcccC-----CHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccch Confidence 889999977554211 111111222234334443443433468999999998888999999999999999999987 Q ss_pred ccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCc Q 005625 441 EKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPK 520 (687) Q Consensus 441 ~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK 520 (687) ...+. .++.... ..........|...++.||.||++|...... ....| +....| T Consensus 135 ~~~~~----~~~~~~~-~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~---~~~~~------------------~~~~~k 188 (405) T TIGR03449 135 AAVKN----AALADGD-TPEPEARRIGEQQLVDNADRLIANTDEEARD---LVRHY------------------DADPDR 188 (405) T ss_pred HHHHH----HhccCCC-CCchHHHHHHHHHHHHhcCeEEECCHHHHHH---HHHHc------------------CCChhh Confidence 43211 0000000 0000011224567889999999998765431 00111 112348 Q ss_pred ceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcccc Q 005625 521 FNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQL 600 (687) Q Consensus 521 ~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l 600 (687) +.+||||||.+.|.|......+ . .+..++++++|+++||+.+.||++.|++|+.++... T Consensus 189 i~vi~ngvd~~~~~~~~~~~~~-----~----------------~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~ 247 (405) T TIGR03449 189 IDVVAPGADLERFRPGDRATER-----A----------------RLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDR 247 (405) T ss_pred EEEECCCcCHHHcCCCcHHHHH-----H----------------hcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhh Confidence 9999999999888765432211 1 122345678999999999999999999999987654 Q ss_pred CCC--ceEEEEEccCCCCCCCCh-HHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 601 REL--VNLVVVAGYIDVNKSKDR-EEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 601 ~~~--~nLVLVGG~~d~~~s~d~-ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) .++ ++++++||..+ ++ + ..++++++++++++.++|+|+|+ ++++++.++|+.+ |+||+||.+ + T Consensus 248 ~~~~~~~l~ivG~~~~-----~g~~---~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~l~~a----d~~v~ps~~E~ 314 (405) T TIGR03449 248 DPDRNLRVIVVGGPSG-----SGLA---TPDALIELAAELGIADRVRFLPP-RPPEELVHVYRAA----DVVAVPSYNES 314 (405) T ss_pred CCCcceEEEEEeCCCC-----Ccch---HHHHHHHHHHHcCCCceEEECCC-CCHHHHHHHHHhC----CEEEECCCCCC Confidence 444 77888886421 12 2 23467788999999999999995 8999999999965 999999999 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 315 ~g~~~lEAma 324 (405) T TIGR03449 315 FGLVAMEAQA 324 (405) T ss_pred cChHHHHHHH Confidence 9999999975 No 9 >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. Probab=99.97 E-value=3.5e-29 Score=266.78 Aligned_cols=323 Identities=31% Similarity=0.457 Sum_probs=228.4 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+|++.|+++. .--|.|++||..+++.+++++|.+ +|| +|.|+|...+.... ... ... T Consensus 1 ~~~~~~~~~~~~--~~~~~~~~GG~~~~~~~l~~~L~~--------~g~----~V~v~~~~~~~~~~-----~~~--~~~ 59 (398) T cd03800 1 RIALISLHGSPL--AQPGGADTGGQNVYVLELARALAR--------LGH----EVDIFTRRIDDALP-----PIV--ELA 59 (398) T ss_pred CeEEEecccccc--ccCCCCCCCceeehHHHHHHHHhc--------cCc----eEEEEEecCCcccC-----Ccc--ccc Confidence 588999997652 112458999999999999999977 899 99999865332110 001 112 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecC Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHA 439 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~Ha 439 (687) .++.+++++..+.. +.++..+++++..|...+.+.+.+. ..+||+||+|++..+.++..+++..++|.|+|.|+ T Consensus 60 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 133 (398) T cd03800 60 PGVRVVRVPAGPAE-----YLPKEELWPYLDEFADDLLRFLRRE-GGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHS 133 (398) T ss_pred cceEEEeccccccc-----CCChhhcchhHHHHHHHHHHHHHhc-CCCccEEEEecCccchHHHHHHhhcCCceEEEeec Confidence 47889998876542 2233346777767776776666442 23899999999998999999999999999999998 Q ss_pred CccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCC Q 005625 440 LEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (687) Q Consensus 440 L~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~p 519 (687) +...+.......|. +.....+..|...++.||.|+++|...... +.. .+ ..... T Consensus 134 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~-------~~~--------~~------~~~~~ 187 (398) T cd03800 134 LGAVKRRHLGAADT-----YEPARRIEAEERLLRAADRVIASTPQEAEE-------LYS--------LY------GAYPR 187 (398) T ss_pred ccccCCcccccccc-----cchhhhhhHHHHHHhhCCEEEEcCHHHHHH-------HHH--------Hc------ccccc Confidence 76433222111111 112233445778899999999998755331 110 01 01123 Q ss_pred cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 520 KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 520 K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) |+.+||||+|.+.|.+....... .+. +...+++++|+++||+.+.||++.+++|+..+.. T Consensus 188 ~~~vi~ng~~~~~~~~~~~~~~~-------~~~-------------~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~ 247 (398) T cd03800 188 RIRVVPPGVDLERFTPYGRAEAR-------RAR-------------LLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPE 247 (398) T ss_pred ccEEECCCCCccceecccchhhH-------HHh-------------hccCCCCcEEEEEcccccccCHHHHHHHHHHHHH Confidence 79999999999888765432210 000 1124567899999999999999999999998876 Q ss_pred cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCc Q 005625 600 LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIP 678 (687) Q Consensus 600 l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFG 678 (687) ..++.+++++||+... ........++.+++++++.++|.|+|+ ++.+++.++|+.+ |+||+||.+ ||| T Consensus 248 ~~~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~a----di~l~ps~~e~~~ 316 (398) T cd03800 248 LRERANLVIVGGPRDD------ILAMDEEELRELARELGVIDRVDFPGR-VSREDLPALYRAA----DVFVNPALYEPFG 316 (398) T ss_pred hCCCeEEEEEECCCCc------chhhhhHHHHHHHHhcCCCceEEEecc-CCHHHHHHHHHhC----CEEEecccccccC Confidence 6677899999876431 111122346778899999999999995 8889999999864 999999999 999 Q ss_pred hhhhcccC Q 005625 679 LNFLPSYK 686 (687) Q Consensus 679 LviLEa~~ 686 (687) ++++||.+ T Consensus 317 ~~l~Ea~a 324 (398) T cd03800 317 LTALEAMA 324 (398) T ss_pred cHHHHHHh Confidence 99999975 No 10 >PLN02316 synthase/transferase Probab=99.97 E-value=1.4e-28 Score=292.17 Aligned_cols=315 Identities=17% Similarity=0.100 Sum_probs=201.8 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCC-Ccccccc-ccc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKG-TTCNQRL-ERV 356 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g-~~~~q~l-E~i 356 (687) ||||+||.|.. ..-.|||+..+|..|++||.+ +|| +|.|+|+..+.... ..-.... ..+ T Consensus 588 M~Il~VSsE~~-------P~aKvGGLgDVV~sLp~ALa~--------~Gh----~V~VitP~Y~~i~~~~~~~~~~~~~~ 648 (1036) T PLN02316 588 MHIVHIAVEMA-------PIAKVGGLGDVVTSLSRAVQD--------LNH----NVDIILPKYDCLNLSHVKDLHYQRSY 648 (1036) T ss_pred cEEEEEEcccC-------CCCCcCcHHHHHHHHHHHHHH--------cCC----EEEEEecCCcccchhhcccceEEEEe Confidence 69999999952 123699999999999999988 899 99999987643100 0000000 000 Q ss_pred c-----------CCCCeEEEEecCCCCccccccccccccchhh---HHH---HHHHHHHHHHHhcCCCceEEEeCCCChh Q 005625 357 S-----------GTEHTHILRVPFRSEKGILRQWISRFDVWPY---LET---FTEDVGSEITAELQGFPDFIIGNYSDGN 419 (687) Q Consensus 357 ~-----------~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~---Le~---f~~~~~~~L~~~~~~~PDLIH~Hys~ag 419 (687) . ..+|+.++.+.... .+..+..+|.| .++ |...++..+ .....+|||||||+|.++ T Consensus 649 ~~~~~~~~v~~~~~~GV~vyfl~~~~------~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l-~~~~~~PDIIHaHDW~ta 721 (1036) T PLN02316 649 SWGGTEIKVWFGKVEGLSVYFLEPQN------GMFWAGCVYGCRNDGERFGFFCHAALEFL-LQSGFHPDIIHCHDWSSA 721 (1036) T ss_pred ccCCEEEEEEEEEECCcEEEEEeccc------cccCCCCCCCchhHHHHHHHHHHHHHHHH-HhcCCCCCEEEECCChHH Confidence 0 11355555554211 11122223322 222 333444444 334679999999999999 Q ss_pred HHHHHHHHc------CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhcccccc Q 005625 420 LVASLLAYK------MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTV 493 (687) Q Consensus 420 lvA~llAr~------lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v 493 (687) +++.++++. .++|+|+|+|++.+.. ++ -..++..||.|||+|.....+ .. T Consensus 722 lva~llk~~~~~~~~~~~p~V~TiHnl~~~~---------------n~------lk~~l~~AD~ViTVS~tya~E---I~ 777 (1036) T PLN02316 722 PVAWLFKDHYAHYGLSKARVVFTIHNLEFGA---------------NH------IGKAMAYADKATTVSPTYSRE---VS 777 (1036) T ss_pred HHHHHHHHhhhhhccCCCCEEEEeCCcccch---------------hH------HHHHHHHCCEEEeCCHHHHHH---HH Confidence 999998875 4589999999875311 00 124678999999998643221 00 Q ss_pred ccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHH-----------hhhhhhhhhhhhhcCCCcccc Q 005625 494 GQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK-----------RLTALHGSIEQLLFDPEQNDE 562 (687) Q Consensus 494 ~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~-----------r~~~l~~~i~~ll~~~~~~~~ 562 (687) +.+ ++.....|+.+||||||.+.|.|.++... .....+..+++. T Consensus 778 ~~~----------------~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~--------- 832 (1036) T PLN02316 778 GNS----------------AIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQR--------- 832 (1036) T ss_pred hcc----------------CcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHH--------- Confidence 111 00111249999999999999987643100 000000111111 Q ss_pred cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC--C Q 005625 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL--D 640 (687) Q Consensus 563 ~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL--~ 640 (687) .|. .+++.|+|++||||+++||++.|++|+.++.+ .+++|+|+|++++ .+ ....+.++++++++ . T Consensus 833 -lGL-~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd------~~---~e~~l~~La~~Lg~~~~ 899 (1036) T PLN02316 833 -LGL-KQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPD------PR---IQNDFVNLANQLHSSHH 899 (1036) T ss_pred -hCC-CcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCC------HH---HHHHHHHHHHHhCccCC Confidence 122 12468999999999999999999999987653 4689999886643 22 23567788999876 6 Q ss_pred CcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 641 GQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 641 ~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++|+|.|. .+......+|+.+ |+||+||++ |||+++|||.+ T Consensus 900 ~rV~f~g~-~de~lah~iyaaA----DiflmPS~~EP~GLvqLEAMa 941 (1036) T PLN02316 900 DRARLCLT-YDEPLSHLIYAGA----DFILVPSIFEPCGLTQLTAMR 941 (1036) T ss_pred CeEEEEec-CCHHHHHHHHHhC----cEEEeCCcccCccHHHHHHHH Confidence 89999884 4433334677743 999999999 99999999974 No 11 >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. Probab=99.97 E-value=1.6e-28 Score=273.85 Aligned_cols=339 Identities=17% Similarity=0.165 Sum_probs=210.1 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccccc--- Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER--- 355 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~--- 355 (687) |||+++|++.+. .-.+||+..+|.+|++||++ +|| +|.|+|+..+...... ....+. T Consensus 1 m~i~~vs~E~~P-------~~k~GGl~~~v~~L~~aL~~--------~G~----~v~v~~p~y~~~~~~~-~~~~~~~~~ 60 (473) T TIGR02095 1 MRVLFVAAEMAP-------FAKTGGLADVVGALPKALAA--------LGH----DVRVLLPAYGCIEDEV-DDQVKVVEL 60 (473) T ss_pred CeEEEEEecccc-------ccCcCcHHHHHHHHHHHHHH--------cCC----eEEEEecCCcChhhhh-ccCeEEEEE Confidence 699999998421 23599999999999999988 899 9999998764321100 000000 Q ss_pred --c-------------cCCCCeEEEEecCCCCcccccccccc-ccchh--h---HH---HHHHHHHHHHHHhcCCCceEE Q 005625 356 --V-------------SGTEHTHILRVPFRSEKGILRQWISR-FDVWP--Y---LE---TFTEDVGSEITAELQGFPDFI 411 (687) Q Consensus 356 --i-------------~~~~~v~IlRvP~~~~~~~~~~~isr-~~iwp--~---Le---~f~~~~~~~L~~~~~~~PDLI 411 (687) + ...+++.++++..... ..| ..+|. | ++ .|...+...+ +..+.+|||| T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~-------~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~-~~~~~~~Dii 132 (473) T TIGR02095 61 VDLSVGPRTLYVKVFEGVVEGVPVYFIDNPSL-------FDRPGGIYGDDYPDNAERFAFFSRAAAELL-SGLGWQPDVV 132 (473) T ss_pred EEEeecCceeEEEEEEEEECCceEEEEECHHH-------cCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HhcCCCCCEE Confidence 0 0113677777754320 011 01221 1 12 2444444444 3346799999 Q ss_pred EeCCCChhHHHHHHHHcCC---CcEEEEecCCccccC-CCC-----chhhhhhc-ccccccchhHHHHHHHhcCCEEEec Q 005625 412 IGNYSDGNLVASLLAYKMG---ITQCTIAHALEKTKY-PDS-----DIYWKKFD-EKYHFSCQFTADLIAMNNADFIITS 481 (687) Q Consensus 412 H~Hys~aglvA~llAr~lg---VP~V~T~HaL~~~ky-~~s-----~l~w~~~~-~~y~~s~rf~aE~iam~~AD~IIts 481 (687) |+|+|.+++++.++++..+ +|+|+|+|++..... +.. ++.|..+. ..+.+..++...+.+++.||.|+|+ T Consensus 133 H~hdw~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tV 212 (473) T TIGR02095 133 HAHDWHTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTV 212 (473) T ss_pred EECCcHHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeec Confidence 9999999999999998876 999999999864221 111 11111110 0111112345567889999999999 Q ss_pred CHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHH----------hhhhhhhhhh Q 005625 482 TYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK----------RLTALHGSIE 551 (687) Q Consensus 482 S~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~----------r~~~l~~~i~ 551 (687) |..-... ..... .++.+.+..+ ....|+.+|+||||.+.|.|..+... .....+..++ T Consensus 213 S~~~~~e---i~~~~---~~~~l~~~l~------~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~ 280 (473) T TIGR02095 213 SPTYARE---ILTPE---FGYGLDGVLK------ARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQ 280 (473) T ss_pred CHhHHHH---hcCCc---CCccchhHHH------hcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHH Confidence 8643221 00010 0111211111 11239999999999999987543110 0000001111 Q ss_pred hhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHH Q 005625 552 QLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMH 631 (687) Q Consensus 552 ~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~ 631 (687) +. .+...++++|+|+++||+.++||++.|++|+.++.. ++++++|+|++. .+. .++++ T Consensus 281 ~~----------~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~lvi~G~g~-------~~~---~~~l~ 338 (473) T TIGR02095 281 EE----------LGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE--LGGQLVVLGTGD-------PEL---EEALR 338 (473) T ss_pred HH----------cCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH--cCcEEEEECCCC-------HHH---HHHHH Confidence 11 122223478999999999999999999999998764 358999888541 222 24566 Q ss_pred HHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 632 ELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 632 ~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +++++++ +++++.+. .+.+++..+|+.+ |+||+||.+ |||++++||.+ T Consensus 339 ~~~~~~~--~~v~~~~~-~~~~~~~~~~~~a----Dv~l~pS~~E~~gl~~lEAma 387 (473) T TIGR02095 339 ELAERYP--GNVRVIIG-YDEALAHLIYAGA----DFILMPSRFEPCGLTQLYAMR 387 (473) T ss_pred HHHHHCC--CcEEEEEc-CCHHHHHHHHHhC----CEEEeCCCcCCcHHHHHHHHH Confidence 7777764 67888773 5777778888854 999999999 99999999975 No 12 >PLN02939 transferase, transferring glycosyl groups Probab=99.97 E-value=3.9e-28 Score=284.47 Aligned_cols=365 Identities=16% Similarity=0.171 Sum_probs=225.3 Q ss_pred HHHhhcCCCcchHhHHhcCC--C--ccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCC Q 005625 256 LLDILQAPDPSTLEKFLGRL--P--MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (687) Q Consensus 256 l~~~l~~p~~~~le~f~~r~--p--~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~ 331 (687) -.++.+.+|...+..|+.=. | +-|||+++|..- .....|||..-+|-.|.+||.+ +|| T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~-------aP~aKtGGLaDVv~sLPkAL~~--------~Gh--- 516 (977) T PLN02939 455 YLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEM-------APVAKVGGLADVVSGLGKALQK--------KGH--- 516 (977) T ss_pred HHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEccc-------ccccccccHHHHHHHHHHHHHH--------cCC--- Confidence 36788899988888876422 1 347999999884 2245899999999999998887 899 Q ss_pred CeEEEEeccCCCCCCCccc-cc-ccc-----ccC-----------CCCeEEEEecCCCCccccccccccccchhh---HH Q 005625 332 PKILIVTRLIPDAKGTTCN-QR-LER-----VSG-----------TEHTHILRVPFRSEKGILRQWISRFDVWPY---LE 390 (687) Q Consensus 332 ~~V~VlTr~ip~~~g~~~~-q~-lE~-----i~~-----------~~~v~IlRvP~~~~~~~~~~~isr~~iwp~---Le 390 (687) +|.|+++.++.-...... .. ++. +.+ .+|+.++.+...... .|..|..+|.| .+ T Consensus 517 -dV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~----~fF~R~~iYg~~Dn~~ 591 (977) T PLN02939 517 -LVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPS----KFFWRAQYYGEHDDFK 591 (977) T ss_pred -eEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCch----hccCCCCCCCCccHHH Confidence 999999876432100000 00 000 000 123444444311100 12233444422 22 Q ss_pred HH---HHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHH------cCCCcEEEEecCCcccc-CCC-----Cchhhhhh Q 005625 391 TF---TEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAY------KMGITQCTIAHALEKTK-YPD-----SDIYWKKF 455 (687) Q Consensus 391 ~f---~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr------~lgVP~V~T~HaL~~~k-y~~-----s~l~w~~~ 455 (687) +| ...++. +....+.+|||||||.|..++++.++.. ..++|.|+|+|++.+.- ++. .++.|..+ T Consensus 592 RF~~FsrAaLe-~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l 670 (977) T PLN02939 592 RFSYFSRAALE-LLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQL 670 (977) T ss_pred HHHHHHHHHHH-HHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHc Confidence 33 333333 3343467999999999999998665443 24689999999996432 111 12222222 Q ss_pred c--cc--ccccchhHHHHHHHhcCCEEEecCHH---HHhccccccccccccccccccccceeecccccCCCcceEeeCCC Q 005625 456 D--EK--YHFSCQFTADLIAMNNADFIITSTYQ---EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA 528 (687) Q Consensus 456 ~--~~--y~~s~rf~aE~iam~~AD~IItsS~q---Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGV 528 (687) . .. .++..++..-+.++..||.|+|+|.. |+. ..+ ++.|.++++ ....|+.+|+||| T Consensus 671 ~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~------te~----G~GL~~~L~------~~~~Kl~gIlNGI 734 (977) T PLN02939 671 DRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVR------SEG----GRGLQDTLK------FHSKKFVGILNGI 734 (977) T ss_pred cChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHH------HHh----ccchHHHhc------cccCCceEEecce Confidence 1 00 01222333334567789999998753 332 111 122322222 1234999999999 Q ss_pred CCCCCCCCChHH----------HhhhhhhhhhhhhhcCCCcccccccCCC-CCCCCEEEEEecCCcCCCHHHHHHHHhhc Q 005625 529 DMDIYFPYSEKQ----------KRLTALHGSIEQLLFDPEQNDEHVGTLS-DRSKPIVFSMARLDHVKNMTGLVECYGKN 597 (687) Q Consensus 529 D~~~F~p~~~~~----------~r~~~l~~~i~~ll~~~~~~~~~~g~l~-~~~kPiIl~VGRLdp~Kni~~LVeAfa~l 597 (687) |.+.|.|.++.. ......+..+++. .|... +++.|+|++||||+++||++.|++|+..+ T Consensus 735 D~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRke----------lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~L 804 (977) T PLN02939 735 DTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQ----------LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKT 804 (977) T ss_pred ehhhcCCccccccccccChhhhhhhhhhhHHHHHH----------hCCCcccccceEEEEeecCCcccChHHHHHHHHHH Confidence 999999875320 0000000112111 12211 14679999999999999999999999876 Q ss_pred cccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 598 SQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 598 ~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) .. .+++|+|+|++++ . ...+.++++++++++.++|+|+|. .+......+|+.+ |+||+||++ | T Consensus 805 l~--~dvqLVIvGdGp~------~---~~e~eL~~La~~l~l~drV~FlG~-~de~lah~IYAaA----DIFLmPSr~EP 868 (977) T PLN02939 805 AE--LGGQFVLLGSSPV------P---HIQREFEGIADQFQSNNNIRLILK-YDEALSHSIYAAS----DMFIIPSMFEP 868 (977) T ss_pred hh--cCCEEEEEeCCCc------H---HHHHHHHHHHHHcCCCCeEEEEec-cCHHHHHHHHHhC----CEEEECCCccC Confidence 53 4688999886532 1 123567788999999999999995 6655566788754 999999999 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 869 fGLvqLEAMA 878 (977) T PLN02939 869 CGLTQMIAMR 878 (977) T ss_pred CcHHHHHHHH Confidence 9999999974 No 13 >PRK14098 glycogen synthase; Provisional Probab=99.96 E-value=5.4e-28 Score=272.14 Aligned_cols=350 Identities=15% Similarity=0.109 Sum_probs=210.5 Q ss_pred CccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCc--ccc-- Q 005625 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT--CNQ-- 351 (687) Q Consensus 276 p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~--~~q-- 351 (687) || |||+++|..- -...+|||..=.+-.|.+||.+ +|| +|.|++.....-.... ... T Consensus 4 ~~-~~il~v~~E~-------~p~~k~Ggl~dv~~~Lp~al~~--------~g~----~v~v~~P~y~~~~~~~~~~~~~~ 63 (489) T PRK14098 4 RN-FKVLYVSGEV-------SPFVRVSALADFMASFPQALEE--------EGF----EARIMMPKYGTINDRKFRLHDVL 63 (489) T ss_pred CC-cEEEEEeecc-------hhhcccchHHHHHHHHHHHHHH--------CCC----eEEEEcCCCCchhhhhhccccce Confidence 77 8999999873 2246899998777777777766 899 9999887654321100 000 Q ss_pred ccccc--cCCCCeEEEEec--CCCCcc---c-c--ccccccccchh-------h---HHHH---HHHHHHHHHHhcCCCc Q 005625 352 RLERV--SGTEHTHILRVP--FRSEKG---I-L--RQWISRFDVWP-------Y---LETF---TEDVGSEITAELQGFP 408 (687) Q Consensus 352 ~lE~i--~~~~~v~IlRvP--~~~~~~---~-~--~~~isr~~iwp-------~---Le~f---~~~~~~~L~~~~~~~P 408 (687) .+..+ .-.....+.++- ..+..+ + + +.+..|..+|. | .++| ...++..+ +....+| T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~-~~~~~~p 142 (489) T PRK14098 64 RLSDIEVPLKEKTDLLHVKVTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETL-QRLGWKP 142 (489) T ss_pred EEEEEEEeecCeeEEEEEEEecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHH-HhcCCCC Confidence 00000 000112222211 000000 0 0 12223333441 1 2233 22333333 3345799 Q ss_pred eEEEeCCCChhHHHHHHHHcC-------CCcEEEEecCCccccCCCCc-----hhhhhhcccccccchhHHHHHHHhcCC Q 005625 409 DFIIGNYSDGNLVASLLAYKM-------GITQCTIAHALEKTKYPDSD-----IYWKKFDEKYHFSCQFTADLIAMNNAD 476 (687) Q Consensus 409 DLIH~Hys~aglvA~llAr~l-------gVP~V~T~HaL~~~ky~~s~-----l~w~~~~~~y~~s~rf~aE~iam~~AD 476 (687) ||||+|+|.+++++.+++++. ++|+|+|+|++......... +.|........+...+...+.+++.|| T Consensus 143 DiiH~hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad 222 (489) T PRK14098 143 DIIHCHDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHAD 222 (489) T ss_pred CEEEecCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcC Confidence 999999999999999998765 89999999998543211100 001101000011122344578899999 Q ss_pred EEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHh----------hhhh Q 005625 477 FIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKR----------LTAL 546 (687) Q Consensus 477 ~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r----------~~~l 546 (687) .|||+|..-..+ +... ...++.|+++.+. ...|+.+|+||||.+.|.|.++...+ .... T Consensus 223 ~VitVS~~~a~e----i~~~-~~~~~gl~~~l~~------~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~ 291 (489) T PRK14098 223 LLTTTSPRYAEE----IAGD-GEEAFGLDKVLEE------RKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLEN 291 (489) T ss_pred cceeeCHHHHHH----hCcC-CCCCcChHHHHHh------cCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHH Confidence 999988543321 0110 0112333333221 13499999999999999886532110 0000 Q ss_pred hhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHH Q 005625 547 HGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAE 626 (687) Q Consensus 547 ~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~e 626 (687) +..+.+ ..+...++++|+|+++|||+++||++.|++|+.++.. .+++|+|+|++. .+ . T Consensus 292 k~~l~~----------~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~-------~~---~ 349 (489) T PRK14098 292 KKALLE----------EVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGD-------KE---Y 349 (489) T ss_pred HHHHHH----------HhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCC-------HH---H Confidence 111111 1233345678999999999999999999999998754 468999988541 12 2 Q ss_pred HHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 627 IEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 627 l~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) .++++++++++ .++|.|+|. ++++++..+|+.+ |+||+||.+ |||++.|||.+ T Consensus 350 ~~~l~~l~~~~--~~~V~~~g~-~~~~~~~~~~a~a----Di~l~PS~~E~~Gl~~lEAma 403 (489) T PRK14098 350 EKRFQDFAEEH--PEQVSVQTE-FTDAFFHLAIAGL----DMLLMPGKIESCGMLQMFAMS 403 (489) T ss_pred HHHHHHHHHHC--CCCEEEEEe-cCHHHHHHHHHhC----CEEEeCCCCCCchHHHHHHHh Confidence 35677888887 479999994 7888888999854 999999999 99999999975 No 14 >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. Probab=99.95 E-value=8.7e-27 Score=253.63 Aligned_cols=288 Identities=15% Similarity=0.150 Sum_probs=198.3 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||++++... .|+.||..+++.+++++|.+ +|| +|.|+|+..++.. ..+ .. . T Consensus 1 kI~~v~~~~---------~p~~GG~e~~~~~la~~L~~--------~G~----~V~v~~~~~~~~~----~~~--~~--~ 51 (398) T cd03796 1 RICMVSDFF---------YPNLGGVETHIYQLSQCLIK--------RGH----KVVVITHAYGNRV----GIR--YL--T 51 (398) T ss_pred CeeEEeecc---------ccccccHHHHHHHHHHHHHH--------cCC----eeEEEeccCCcCC----Ccc--cc--c Confidence 688888642 57899999999999999988 899 9999997533221 111 11 2 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChh--HHHHHHHHcCCCcEEEEe Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGN--LVASLLAYKMGITQCTIA 437 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~ag--lvA~llAr~lgVP~V~T~ 437 (687) .++.|+++|...... .. .++ ....+...+.+.+ + +.+|||||+|...++ ..+.++++..++|+|+|. T Consensus 52 ~~i~v~~~p~~~~~~---~~----~~~-~~~~~~~~l~~~~-~--~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~ 120 (398) T cd03796 52 NGLKVYYLPFVVFYN---QS----TLP-TFFGTFPLLRNIL-I--RERITIVHGHQAFSALAHEALLHARTMGLKTVFTD 120 (398) T ss_pred CceeEEEecceeccC---Cc----ccc-chhhhHHHHHHHH-H--hcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEe Confidence 478899998754210 00 000 1011111222222 2 468999999986543 346777899999999999 Q ss_pred cCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccC Q 005625 438 HALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 517 (687) Q Consensus 438 HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~ 517 (687) |+..... +.. .. ... ......++.+|.||++|...... ....+ ++. T Consensus 121 h~~~~~~----~~~-~~------~~~--~~~~~~~~~~d~ii~~s~~~~~~---~~~~~------------------~~~ 166 (398) T cd03796 121 HSLFGFA----DAS-SI------HTN--KLLRFSLADVDHVICVSHTSKEN---TVLRA------------------SLD 166 (398) T ss_pred ccccccc----chh-hH------Hhh--HHHHHhhccCCEEEEecHhHhhH---HHHHh------------------CCC Confidence 9853210 000 00 000 12345678999999988654320 00000 111 Q ss_pred CCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhc Q 005625 518 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKN 597 (687) Q Consensus 518 ~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l 597 (687) ..|+.+||||+|.+.|.|.... .++++++|+++||+.++||++.|++|+..+ T Consensus 167 ~~k~~vi~ngvd~~~f~~~~~~----------------------------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l 218 (398) T cd03796 167 PERVSVIPNAVDSSDFTPDPSK----------------------------RDNDKITIVVISRLVYRKGIDLLVGIIPEI 218 (398) T ss_pred hhhEEEEcCccCHHHcCCCccc----------------------------CCCCceEEEEEeccchhcCHHHHHHHHHHH Confidence 2389999999998877653210 124678999999999999999999999987 Q ss_pred cccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 598 SQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 598 ~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) .+..++..++++|++. . .+.+.++++++++.++|+|+|+ ++++++.++|+.+ |+||+||.+ + T Consensus 219 ~~~~~~~~l~i~G~g~---------~---~~~l~~~~~~~~l~~~v~~~G~-~~~~~~~~~l~~a----d~~v~pS~~E~ 281 (398) T cd03796 219 CKKHPNVRFIIGGDGP---------K---RILLEEMREKYNLQDRVELLGA-VPHERVRDVLVQG----HIFLNTSLTEA 281 (398) T ss_pred HhhCCCEEEEEEeCCc---------h---HHHHHHHHHHhCCCCeEEEeCC-CCHHHHHHHHHhC----CEEEeCChhhc Confidence 7666788899888542 1 2356788999999999999995 8889999999864 999999999 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 282 ~g~~~~EAma 291 (398) T cd03796 282 FCIAIVEAAS 291 (398) T ss_pred cCHHHHHHHH Confidence 9999999975 No 15 >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Probab=99.95 E-value=3e-26 Score=254.51 Aligned_cols=342 Identities=18% Similarity=0.136 Sum_probs=209.3 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccc--- Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV--- 356 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i--- 356 (687) ||+++|+.-+ ....+||...++.+|++||++ +|| +|.|+|+..+..... .....+.. T Consensus 1 ~Il~v~~E~~-------p~~k~GGl~~~~~~L~~aL~~--------~G~----~V~Vi~p~y~~~~~~-~~~~~~~~~~~ 60 (476) T cd03791 1 KVLFVASEVA-------PFAKTGGLGDVVGALPKALAK--------LGH----DVRVIMPKYGRILDE-LRGQLLVLRLF 60 (476) T ss_pred CEEEEEcccc-------ccccCCcHHHHHHHHHHHHHH--------CCC----eEEEEecCCcchhhH-hccCeEEEEEE Confidence 6999998831 123799999999999999988 899 999999765432100 00000000 Q ss_pred ---------------cCCCCeEEEEecCCCCcccccccc--ccccchhh-HH---HHHHHHHHHHHHhcCCCceEEEeCC Q 005625 357 ---------------SGTEHTHILRVPFRSEKGILRQWI--SRFDVWPY-LE---TFTEDVGSEITAELQGFPDFIIGNY 415 (687) Q Consensus 357 ---------------~~~~~v~IlRvP~~~~~~~~~~~i--sr~~iwp~-Le---~f~~~~~~~L~~~~~~~PDLIH~Hy 415 (687) ....|+.+++++..... -+.++ +....|.. .. -|...+...+ +.+..+|||||+|. T Consensus 61 ~~~~~~~~~~~~~~~~~~~gv~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l-~~~~~~pDviH~hd 137 (476) T cd03791 61 GVPVGGRPEYVGVFELPVDGVPVYFLDNPDYF--DRPGLYDDSGYDYEDNAERFALFSRAALELL-RRLGWKPDIIHCHD 137 (476) T ss_pred eeccCCceeEEEEEEEEeCCceEEEEcChHHc--CCCCCCCccCCCCccHHHHHHHHHHHHHHHH-HhcCCCCcEEEECc Confidence 01246777777553210 00000 00111111 11 2333444444 33468999999999 Q ss_pred CChhHHHHHHHHcC------CCcEEEEecCCccccCCC------Cchhh---hhhcccccccchhHHHHHHHhcCCEEEe Q 005625 416 SDGNLVASLLAYKM------GITQCTIAHALEKTKYPD------SDIYW---KKFDEKYHFSCQFTADLIAMNNADFIIT 480 (687) Q Consensus 416 s~aglvA~llAr~l------gVP~V~T~HaL~~~ky~~------s~l~w---~~~~~~y~~s~rf~aE~iam~~AD~IIt 480 (687) |.+++++.+++... ++|+|+|+|++....... ....| ..+. .+.+..++..++.+++.||.|+| T Consensus 138 ~~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ad~v~~ 216 (476) T cd03791 138 WHTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHID-GLEFYGQVNFLKAGIVYADAVTT 216 (476) T ss_pred hHHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhc-ccccCCcccHHHHHHHhcCcCee Confidence 99999999888774 899999999985432111 00111 0010 12233445678899999999999 Q ss_pred cCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHh----------hhhhhhhh Q 005625 481 STYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKR----------LTALHGSI 550 (687) Q Consensus 481 sS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r----------~~~l~~~i 550 (687) +|..-... ....+. ++.|.++.+ ....|+.+|+||||.+.|.|....... ....+..+ T Consensus 217 vS~~~~~~---i~~~~~---~~gl~~~~~------~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l 284 (476) T cd03791 217 VSPTYARE---ILTPEF---GEGLDGLLR------ARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAAL 284 (476) T ss_pred cCHhHHHH---hCCCCC---CcchHHHHH------hccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHH Confidence 87532211 000100 111111111 113499999999999999876542210 00001112 Q ss_pred hhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHH Q 005625 551 EQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKM 630 (687) Q Consensus 551 ~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L 630 (687) ++. .+...++++|+|+++||+.++||++.|++|+.++.. ..++++++|++ + .+ ..+.+ T Consensus 285 ~~~----------~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~lvi~G~g-~------~~---~~~~~ 342 (476) T cd03791 285 QEE----------LGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLE--LGGQLVILGSG-D------PE---YEEAL 342 (476) T ss_pred HHH----------cCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHH--cCcEEEEEecC-C------HH---HHHHH Confidence 111 122225788999999999999999999999998764 34889988854 2 22 23456 Q ss_pred HHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 631 HELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 631 ~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) .++++++ .++|++.+. .+.+.+..+|+.+ |+||+||.+ |||++++||.+ T Consensus 343 ~~~~~~~--~~~v~~~~~-~~~~~~~~~~~~a----Dv~l~pS~~E~~gl~~lEAma 392 (476) T cd03791 343 RELAARY--PGRVAVLIG-YDEALAHLIYAGA----DFFLMPSRFEPCGLTQMYAMR 392 (476) T ss_pred HHHHHhC--CCcEEEEEe-CCHHHHHHHHHhC----CEEECCCCCCCCcHHHHHHhh Confidence 6677766 667876552 4566777888854 999999999 99999999975 No 16 >PRK14099 glycogen synthase; Provisional Probab=99.95 E-value=6.2e-26 Score=255.26 Aligned_cols=343 Identities=17% Similarity=0.161 Sum_probs=197.2 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCC--CCccccccccc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAK--GTTCNQRLERV 356 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~--g~~~~q~lE~i 356 (687) ||||++|..- ....+|||..-.+-.|.+||.+ +|| +|.|++.....-. ..... .+..+ T Consensus 4 ~~il~v~~E~-------~p~~k~ggl~dv~~~lp~~l~~--------~g~----~v~v~~P~y~~~~~~~~~~~-~~~~~ 63 (485) T PRK14099 4 LRVLSVASEI-------FPLIKTGGLADVAGALPAALKA--------HGV----EVRTLVPGYPAVLAGIEDAE-QVHSF 63 (485) T ss_pred cEEEEEEecc-------ccccCCCcHHHHHHHHHHHHHH--------CCC----cEEEEeCCCcchhhhhcCce-EEEEE Confidence 6999999873 2356899998777777777766 899 8888887653321 00000 01111 Q ss_pred cC--CCCeEEEEecCCCCcc-cc--cccccccc-ch--------h-hHHHHHH--HHHHHHHHhc--CCCceEEEeCCCC Q 005625 357 SG--TEHTHILRVPFRSEKG-IL--RQWISRFD-VW--------P-YLETFTE--DVGSEITAEL--QGFPDFIIGNYSD 417 (687) Q Consensus 357 ~~--~~~v~IlRvP~~~~~~-~~--~~~isr~~-iw--------p-~Le~f~~--~~~~~L~~~~--~~~PDLIH~Hys~ 417 (687) .. ...+++.........- ++ +.|..|.. ++ + ..++|+- .+.-++.+.. ..+|||||+|.|. T Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~ 143 (485) T PRK14099 64 PDLFGGPARLLAARAGGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQ 143 (485) T ss_pred eeeCCceEEEEEEEeCCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcH Confidence 10 0012222211110000 00 11222221 22 1 1233321 2222232221 4689999999999 Q ss_pred hhHHHHHHHH--cCCCcEEEEecCCccccC-CC-----Cchhhhhhcc-cccccchhHHHHHHHhcCCEEEecCHH---H Q 005625 418 GNLVASLLAY--KMGITQCTIAHALEKTKY-PD-----SDIYWKKFDE-KYHFSCQFTADLIAMNNADFIITSTYQ---E 485 (687) Q Consensus 418 aglvA~llAr--~lgVP~V~T~HaL~~~ky-~~-----s~l~w~~~~~-~y~~s~rf~aE~iam~~AD~IItsS~q---E 485 (687) +++++.++.. ..++|.|+|+|++..... +. .++.+..+.. ...+...+...+.+++.||.|||+|.. | T Consensus 144 ~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~e 223 (485) T PRK14099 144 AGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALE 223 (485) T ss_pred HHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHH Confidence 9999988764 357899999999854321 10 0111111100 001111122356789999999998853 3 Q ss_pred HhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHh----------hhhhhhhhhhhhc Q 005625 486 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKR----------LTALHGSIEQLLF 555 (687) Q Consensus 486 i~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r----------~~~l~~~i~~ll~ 555 (687) +.. .+ .++.+.+.++ ....|+.+|+||||.+.|.|.+++... ....+..+++. T Consensus 224 i~~------~~---~g~gl~~~l~------~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~-- 286 (485) T PRK14099 224 IQG------PE---AGMGLDGLLR------QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQAR-- 286 (485) T ss_pred Hhc------cc---CCcChHHHHH------hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHH-- Confidence 321 11 0111111111 112489999999999999886542100 00000111111 Q ss_pred CCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHH Q 005625 556 DPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK 635 (687) Q Consensus 556 ~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~ 635 (687) .+...+++.|+|+++|||+++||++.|++|+.++.. ++.+|+|+|++. .+. .++++++++ T Consensus 287 --------~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G~-------~~~---~~~l~~l~~ 346 (485) T PRK14099 287 --------FGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSGD-------AEL---EARFRAAAQ 346 (485) T ss_pred --------cCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecCC-------HHH---HHHHHHHHH Confidence 132223467899999999999999999999987753 468899988641 222 245667787 Q ss_pred HcCCCCcE-EEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 636 TYKLDGQF-RWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 636 elgL~~~V-~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +++ +++ .|+|+ +++++.+|..+ +|+||+||++ |||++++||.+ T Consensus 347 ~~~--~~v~~~~G~---~~~l~~~~~a~---aDifv~PS~~E~fGl~~lEAma 391 (485) T PRK14099 347 AYP--GQIGVVIGY---DEALAHLIQAG---ADALLVPSRFEPCGLTQLCALR 391 (485) T ss_pred HCC--CCEEEEeCC---CHHHHHHHHhc---CCEEEECCccCCCcHHHHHHHH Confidence 775 555 78995 56788877533 3999999999 99999999975 No 17 >PRK10307 putative glycosyl transferase; Provisional Probab=99.94 E-value=1.7e-25 Score=244.15 Aligned_cols=318 Identities=12% Similarity=0.105 Sum_probs=203.2 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccC--CCCC--CCccccccc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLI--PDAK--GTTCNQRLE 354 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~i--p~~~--g~~~~q~lE 354 (687) |||+++|.+. .|+.||...++.+++++|.+ +|| +|+|+|+.. |... ....+.... T Consensus 1 mkIlii~~~~---------~P~~~g~~~~~~~l~~~L~~--------~G~----~V~vit~~~~~~~~~~~~~~~~~~~~ 59 (412) T PRK10307 1 MKILVYGINY---------APELTGIGKYTGEMAEWLAA--------RGH----EVRVITAPPYYPQWRVGEGYSAWRYR 59 (412) T ss_pred CeEEEEecCC---------CCCccchhhhHHHHHHHHHH--------CCC----eEEEEecCCCCCCCCCCcccccccce Confidence 5999999773 48899999999999999988 899 999999641 1110 000000100 Q ss_pred cccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCC--hhHHHHHHHHcCCCc Q 005625 355 RVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSD--GNLVASLLAYKMGIT 432 (687) Q Consensus 355 ~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~--aglvA~llAr~lgVP 432 (687) .....+++|+|+|...... +..+. .+.. +..|.......+.+....+||+||+|... .+.+|.+++++.++| T Consensus 60 -~~~~~~i~v~r~~~~~~~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~ 133 (412) T PRK10307 60 -RESEGGVTVWRCPLYVPKQ--PSGLK--RLLH-LGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGAR 133 (412) T ss_pred -eeecCCeEEEEccccCCCC--ccHHH--HHHH-HHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCC Confidence 0112489999998743210 00010 1111 11233333333333223689999999753 456778889999999 Q ss_pred EEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeec Q 005625 433 QCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVH 512 (687) Q Consensus 433 ~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~ 512 (687) +|+++|+.........+. +.. .....+.. ..|..+++.||.||+.|....+ .+..+ T Consensus 134 ~v~~~~d~~~~~~~~~~~-~~~-~~~~~~~~--~~~~~~~~~ad~ii~~S~~~~~-------~~~~~------------- 189 (412) T PRK10307 134 TWLHIQDYEVDAAFGLGL-LKG-GKVARLAT--AFERSLLRRFDNVSTISRSMMN-------KAREK------------- 189 (412) T ss_pred EEEEeccCCHHHHHHhCC-ccC-cHHHHHHH--HHHHHHHhhCCEEEecCHHHHH-------HHHHc------------- Confidence 999999753211000000 000 00001111 2477889999999999876543 11110 Q ss_pred ccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHH Q 005625 513 GIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVE 592 (687) Q Consensus 513 gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVe 592 (687) +....|+.|||||||.+.|.|...... ..+++ .+..++++++|+++||+.+.||++.|++ T Consensus 190 --~~~~~~i~vi~ngvd~~~~~~~~~~~~------~~~~~------------~~~~~~~~~~i~~~G~l~~~kg~~~li~ 249 (412) T PRK10307 190 --GVAAEKVIFFPNWSEVARFQPVADADV------DALRA------------QLGLPDGKKIVLYSGNIGEKQGLELVID 249 (412) T ss_pred --CCCcccEEEECCCcCHhhcCCCCccch------HHHHH------------HcCCCCCCEEEEEcCccccccCHHHHHH Confidence 111348999999999998876532110 01111 1223456789999999999999999999 Q ss_pred HHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEc Q 005625 593 CYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQV 672 (687) Q Consensus 593 Afa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlP 672 (687) |++++.. .++++|+|+|.+. + .+.++++++++++. +|+|+|+ ++++++.++|+.+ |+||+| T Consensus 250 a~~~l~~-~~~~~l~ivG~g~---------~---~~~l~~~~~~~~l~-~v~f~G~-~~~~~~~~~~~~a----Di~v~p 310 (412) T PRK10307 250 AARRLRD-RPDLIFVICGQGG---------G---KARLEKMAQCRGLP-NVHFLPL-QPYDRLPALLKMA----DCHLLP 310 (412) T ss_pred HHHHhcc-CCCeEEEEECCCh---------h---HHHHHHHHHHcCCC-ceEEeCC-CCHHHHHHHHHhc----CEeEEe Confidence 9987743 4568899887542 1 24567789999997 7999995 8899999999864 999999 Q ss_pred CCC-CCch----hhhcccC Q 005625 673 YVH-PIPL----NFLPSYK 686 (687) Q Consensus 673 Sl~-gFGL----viLEa~~ 686 (687) |.. ++|+ .++||.+ T Consensus 311 s~~e~~~~~~p~kl~eama 329 (412) T PRK10307 311 QKAGAADLVLPSKLTNMLA 329 (412) T ss_pred eccCcccccCcHHHHHHHH Confidence 998 7554 4677753 No 18 >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. Probab=99.94 E-value=4.4e-25 Score=236.45 Aligned_cols=299 Identities=20% Similarity=0.200 Sum_probs=194.9 Q ss_pred ceEEEEccCCCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccccccc Q 005625 279 FNVVILSPHGYFGQANVLGLPDT-GGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~Pdt-GGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~ 357 (687) |||+++|... .|+. ||..+++.+++++|.+ + + .|.|+|... . .. T Consensus 1 mkI~~i~~~~---------~p~~~GG~~~~v~~l~~~l~~--------~-~----~v~v~~~~~-~--------~~---- 45 (388) T TIGR02149 1 MKVTVLTREY---------PPNVYGGAGVHVEELTRELAR--------L-M----DVDVRCFGD-Q--------RF---- 45 (388) T ss_pred CeeEEEeccc---------CccccccHhHHHHHHHHHHHH--------h-c----CeeEEcCCC-c--------hh---- Confidence 6999998642 3664 9999999999999976 3 4 555555321 1 11 Q ss_pred CCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEe Q 005625 358 GTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 437 (687) Q Consensus 358 ~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~ 437 (687) ...++.+++++..... ......+..+..++. ......+||+||+|.+.+++++.++++..++|+|+|. T Consensus 46 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~~~ 113 (388) T TIGR02149 46 DSEGLTVKGYRPWSEL---------KEANKALGTFSVDLA---MANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVVTA 113 (388) T ss_pred cCCCeEEEEecChhhc---------cchhhhhhhhhHHHH---HhhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEEEe Confidence 1136778877643210 011112222222222 1112357999999998888888888888899999999 Q ss_pred cCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccC Q 005625 438 HALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 517 (687) Q Consensus 438 HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~ 517 (687) |++......... .....+.+.. ..+..+++.||.||++|...... ....| | +.. T Consensus 114 h~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~ad~vi~~S~~~~~~---~~~~~--------~---------~~~ 167 (388) T TIGR02149 114 HSLEPLRPWKEE----QLGGGYKLSS--WAEKTAIEAADRVIAVSGGMRED---ILKYY--------P---------DLD 167 (388) T ss_pred eccccccccccc----ccccchhHHH--HHHHHHHhhCCEEEEccHHHHHH---HHHHc--------C---------CCC Confidence 987432110000 0001122211 24678899999999998754321 00011 0 111 Q ss_pred CCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhc Q 005625 518 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKN 597 (687) Q Consensus 518 ~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l 597 (687) ..|+.|||||+|.+.|.|......+ .+ +..++++++|+++||+.+.||++.|++|+.++ T Consensus 168 ~~~i~vi~ng~~~~~~~~~~~~~~~-----~~----------------~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l 226 (388) T TIGR02149 168 PEKVHVIYNGIDTKEYKPDDGNVVL-----DR----------------YGIDRSRPYILFVGRITRQKGVPHLLDAVHYI 226 (388) T ss_pred cceEEEecCCCChhhcCCCchHHHH-----HH----------------hCCCCCceEEEEEcccccccCHHHHHHHHHHH Confidence 2489999999999888765432221 11 12355788999999999999999999999876 Q ss_pred cccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC-CCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC- Q 005625 598 SQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL-DGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH- 675 (687) Q Consensus 598 ~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL-~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~- 675 (687) . ++.+++++||+++ .+ +..+++++.+++++. .++|.|.+..++.+++.++|+.+ |+||+||.+ T Consensus 227 ~---~~~~l~i~g~g~~------~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a----Dv~v~ps~~e 291 (388) T TIGR02149 227 P---KDVQVVLCAGAPD------TP--EVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNA----EVFVCPSIYE 291 (388) T ss_pred h---hcCcEEEEeCCCC------cH--HHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhC----CEEEeCCccC Confidence 3 4678888876543 11 123456677777776 35688765458899999999854 999999999 Q ss_pred CCchhhhcccC Q 005625 676 PIPLNFLPSYK 686 (687) Q Consensus 676 gFGLviLEa~~ 686 (687) +||++++||.+ T Consensus 292 ~~g~~~lEA~a 302 (388) T TIGR02149 292 PLGIVNLEAMA 302 (388) T ss_pred CCChHHHHHHH Confidence 99999999975 No 19 >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=99.93 E-value=2e-24 Score=228.83 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=187.0 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) |||++++ .|..||..+++.+++++|++ +|| +|.|+|...+.. .. + . T Consensus 1 mki~~~~------------~p~~gG~~~~~~~la~~L~~--------~G~----~v~v~~~~~~~~------~~-~---~ 46 (371) T cd04962 1 MKIGIVC------------YPTYGGSGVVATELGKALAR--------RGH----EVHFITSSRPFR------LD-E---Y 46 (371) T ss_pred CceeEEE------------EeCCCCccchHHHHHHHHHh--------cCC----ceEEEecCCCcc------hh-h---h Confidence 5899997 25679999999999999988 899 999998643211 00 0 1 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHc----CCCcEE Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK----MGITQC 434 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~----lgVP~V 434 (687) .+++.+..++..... . .....+.......+.+.+ + +.+||+||+|++.....+.+++++ .++|+| T Consensus 47 ~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~~i-~--~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i 115 (371) T cd04962 47 SPNIFFHEVEVPQYP-L-------FQYPPYDLALASKIAEVA-K--RYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVV 115 (371) T ss_pred ccCeEEEEecccccc-h-------hhcchhHHHHHHHHHHHH-h--cCCccEEeecccCCccHHHHHHHHhcCcCCCcEE Confidence 124444444432110 0 011111112222333333 3 469999999987554444444332 389999 Q ss_pred EEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeeccc Q 005625 435 TIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGI 514 (687) Q Consensus 435 ~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi 514 (687) +|.|+.......... .+. ...+.+++.||.||+.|..... .... .+ T Consensus 116 ~~~h~~~~~~~~~~~--------~~~-----~~~~~~~~~~d~ii~~s~~~~~-------~~~~--------~~------ 161 (371) T cd04962 116 TTLHGTDITLVGQDP--------SFQ-----PATRFSIEKSDGVTAVSESLRQ-------ETYE--------LF------ 161 (371) T ss_pred EEEcCCccccccccc--------cch-----HHHHHHHhhCCEEEEcCHHHHH-------HHHH--------hc------ Confidence 999976322110000 011 1245678999999998865432 1110 00 Q ss_pred ccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHH Q 005625 515 DVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECY 594 (687) Q Consensus 515 ~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAf 594 (687) ....++.|||||+|...|.+......+ . .+...+++++++++||+.+.||++.|++|+ T Consensus 162 -~~~~~i~vi~n~~~~~~~~~~~~~~~~-----~----------------~~~~~~~~~~il~~g~l~~~K~~~~li~a~ 219 (371) T cd04962 162 -DITKEIEVIPNFVDEDRFRPKPDEALK-----R----------------RLGAPEGEKVLIHISNFRPVKRIDDVIRIF 219 (371) T ss_pred -CCcCCEEEecCCcCHhhcCCCchHHHH-----H----------------hcCCCCCCeEEEEecccccccCHHHHHHHH Confidence 123489999999998877664432211 1 112345778999999999999999999999 Q ss_pred hhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCC Q 005625 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYV 674 (687) Q Consensus 595 a~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl 674 (687) ..+... ...+++++|.+.+ .+.++++++++++.++|.|+|+ . +++.++|+.+ |+||+||. T Consensus 220 ~~l~~~-~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~~v~~~g~-~--~~~~~~~~~~----d~~v~ps~ 279 (371) T cd04962 220 AKVRKE-VPARLLLVGDGPE------------RSPAERLARELGLQDDVLFLGK-Q--DHVEELLSIA----DLFLLPSE 279 (371) T ss_pred HHHHhc-CCceEEEEcCCcC------------HHHHHHHHHHcCCCceEEEecC-c--ccHHHHHHhc----CEEEeCCC Confidence 887643 4578888875532 1345678889999999999995 3 4788888854 99999999 Q ss_pred C-CCchhhhcccC Q 005625 675 H-PIPLNFLPSYK 686 (687) Q Consensus 675 ~-gFGLviLEa~~ 686 (687) + |||++++||.+ T Consensus 280 ~E~~~~~~~EAma 292 (371) T cd04962 280 KESFGLAALEAMA 292 (371) T ss_pred cCCCccHHHHHHH Confidence 9 99999999975 No 20 >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Probab=99.92 E-value=2.8e-23 Score=231.55 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=188.0 Q ss_pred CCCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccc Q 005625 274 RLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRL 353 (687) Q Consensus 274 r~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~l 353 (687) +-|| ||++++ |.. ..+..||...++.+++++|.+ +|| +|.|+|.....+ T Consensus 56 ~~~m--rI~~~~-~~~-------~~~~~gG~~~~~~~l~~~L~~--------~G~----eV~vlt~~~~~~--------- 104 (465) T PLN02871 56 SRPR--RIALFV-EPS-------PFSYVSGYKNRFQNFIRYLRE--------MGD----EVLVVTTDEGVP--------- 104 (465) T ss_pred CCCc--eEEEEE-CCc-------CCcccccHHHHHHHHHHHHHH--------CCC----eEEEEecCCCCC--------- Confidence 4365 999996 321 135689999999999999887 899 999999642111 Q ss_pred ccccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCC-hhHHHHHHHHcCCCc Q 005625 354 ERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSD-GNLVASLLAYKMGIT 432 (687) Q Consensus 354 E~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~-aglvA~llAr~lgVP 432 (687) +.. .++.+++++..+.. +.... . +.+ .+...+.+.+ + +.+|||||+|+.. ..+.+.++++..++| T Consensus 105 ~~~---~g~~v~~~~~~~~~-~~~~~----~-~~~--~~~~~l~~~i-~--~~kpDiIh~~~~~~~~~~~~~~ak~~~ip 170 (465) T PLN02871 105 QEF---HGAKVIGSWSFPCP-FYQKV----P-LSL--ALSPRIISEV-A--RFKPDLIHASSPGIMVFGALFYAKLLCVP 170 (465) T ss_pred ccc---cCceeeccCCcCCc-cCCCc----e-eec--cCCHHHHHHH-H--hCCCCEEEECCCchhHHHHHHHHHHhCCC Confidence 111 24555544332211 10000 0 000 0111233333 3 3689999999764 344566778899999 Q ss_pred EEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeec Q 005625 433 QCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVH 512 (687) Q Consensus 433 ~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~ 512 (687) +|+|.|+............|. +... +..++..++.||.||++|..... .+.. . T Consensus 171 ~V~~~h~~~~~~~~~~~~~~~-----~~~~--~~~~r~~~~~ad~ii~~S~~~~~-------~l~~--------~----- 223 (465) T PLN02871 171 LVMSYHTHVPVYIPRYTFSWL-----VKPM--WDIIRFLHRAADLTLVTSPALGK-------ELEA--------A----- 223 (465) T ss_pred EEEEEecCchhhhhcccchhh-----HHHH--HHHHHHHHhhCCEEEECCHHHHH-------HHHH--------c----- Confidence 999999864221111111110 0000 12345678899999999865543 1211 0 Q ss_pred ccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHH Q 005625 513 GIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVE 592 (687) Q Consensus 513 gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVe 592 (687) | .....|+.|||||||.+.|.|...... .+.+. . ...+++++|+++||+.+.||++.|++ T Consensus 224 ~-~~~~~kv~vi~nGvd~~~f~p~~~~~~----~~~~~--------------~-~~~~~~~~i~~vGrl~~~K~~~~li~ 283 (465) T PLN02871 224 G-VTAANRIRVWNKGVDSESFHPRFRSEE----MRARL--------------S-GGEPEKPLIVYVGRLGAEKNLDFLKR 283 (465) T ss_pred C-CCCcCeEEEeCCccCccccCCccccHH----HHHHh--------------c-CCCCCCeEEEEeCCCchhhhHHHHHH Confidence 0 011248999999999999877543211 01111 0 12346789999999999999999999 Q ss_pred HHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEc Q 005625 593 CYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQV 672 (687) Q Consensus 593 Afa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlP 672 (687) +++++ ++.+|+|+|+++ +. +++++++++ .+|.|+|+ ++++++.++|+.+ |+||+| T Consensus 284 a~~~~----~~~~l~ivG~G~---------~~---~~l~~~~~~----~~V~f~G~-v~~~ev~~~~~~a----Dv~V~p 338 (465) T PLN02871 284 VMERL----PGARLAFVGDGP---------YR---EELEKMFAG----TPTVFTGM-LQGDELSQAYASG----DVFVMP 338 (465) T ss_pred HHHhC----CCcEEEEEeCCh---------HH---HHHHHHhcc----CCeEEecc-CCHHHHHHHHHHC----CEEEEC Confidence 99865 367899988542 22 334455553 37999995 8889999999964 999999 Q ss_pred CCC-CCchhhhcccC Q 005625 673 YVH-PIPLNFLPSYK 686 (687) Q Consensus 673 Sl~-gFGLviLEa~~ 686 (687) |.+ +||++++||.+ T Consensus 339 S~~E~~g~~vlEAmA 353 (465) T PLN02871 339 SESETLGFVVLEAMA 353 (465) T ss_pred CcccccCcHHHHHHH Confidence 999 99999999975 No 21 >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. Probab=99.92 E-value=2.2e-23 Score=223.61 Aligned_cols=313 Identities=16% Similarity=0.177 Sum_probs=190.1 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) |||+++.|.- ..||..+++.++|++|.+ +|| +|.|+|...+. ..+ .+...+ T Consensus 1 mkIl~~~~~~-----------~~gG~e~~~~~la~~L~~--------~G~----~V~v~~~~~~~---~~~---~~~~~~ 51 (392) T cd03805 1 LRVAFIHPDL-----------GIGGAERLVVDAALALQS--------RGH----EVTIYTSHHDP---SHC---FEETKD 51 (392) T ss_pred CeEEEECCCC-----------CCchHHHHHHHHHHHHHh--------CCC----eEEEEcCCCCc---hhc---chhccC Confidence 5899997652 369999999999999988 899 99999863211 111 111111 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHH--HhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEE Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEIT--AELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 436 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~--~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T 436 (687) .++.+..++......+ ..++. .+..+.......+. .....++|+||+|....+..+ +....+.|++++ T Consensus 52 -~~~~i~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~--~~~~~~~~~i~~ 121 (392) T cd03805 52 -GTLPVRVRGDWLPRSI----FGRFH---ILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPL--LKLFSPSKILFY 121 (392) T ss_pred -CeeEEEEEeEEEcchh----hHhHH---HHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHH--HHHhcCCcEEEE Confidence 1233333221111000 01100 01111111111110 112468999999976554332 233334899999 Q ss_pred ecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeeccccc Q 005625 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (687) Q Consensus 437 ~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v 516 (687) .|............. .. .++... ...|..+++.||.||++|..... .+.. .+. . T Consensus 122 ~h~~~~~~~~~~~~~-~~---~~~~~~-~~~e~~~~~~ad~ii~~s~~~~~-------~~~~--------~~~------~ 175 (392) T cd03805 122 CHFPDQLLAQRGSLL-KR---LYRKPF-DWLEEFTTGMADKIVVNSNFTAS-------VFKK--------TFP------S 175 (392) T ss_pred EecChHHhcCCCcHH-HH---HHHHHH-HHHHHHHhhCceEEEEcChhHHH-------HHHH--------Hhc------c Confidence 994321100001111 11 111100 12477889999999998754322 0110 011 1 Q ss_pred CCC-cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHh Q 005625 517 FDP-KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (687) Q Consensus 517 ~~p-K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa 595 (687) ... ++.|||||+|.+.|.|......+ + .....+++++|+++||+.+.||++.|++|+. T Consensus 176 ~~~~~~~vi~n~vd~~~~~~~~~~~~~--------~-------------~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~ 234 (392) T cd03805 176 LAKNPREVVYPCVDTDSFESTSEDPDP--------G-------------LLIPKSGKKTFLSINRFERKKNIALAIEAFA 234 (392) T ss_pred cccCCcceeCCCcCHHHcCcccccccc--------c-------------ccccCCCceEEEEEeeecccCChHHHHHHHH Confidence 122 45699999998888664321110 0 1123456789999999999999999999999 Q ss_pred hccccC---CCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHH-cCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEE Q 005625 596 KNSQLR---ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQ 671 (687) Q Consensus 596 ~l~~l~---~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~e-lgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVl 671 (687) ++.... ++++|+++|++.. . ..+.....+++++++++ +++.++|+|+|+ ++.+++.++|+.+ |+|++ T Consensus 235 ~l~~~~~~~~~~~l~i~G~~~~-~---~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~-~~~~~~~~~l~~a----d~~l~ 305 (392) T cd03805 235 ILKDKLAEFKNVRLVIAGGYDP-R---VAENVEYLEELQRLAEELLLLEDQVIFLPS-ISDSQKELLLSSA----RALLY 305 (392) T ss_pred HHHhhcccccCeEEEEEcCCCC-C---CchhHHHHHHHHHHHHHhcCCCceEEEeCC-CChHHHHHHHhhC----eEEEE Confidence 887654 5788999886532 1 11223345678889999 999999999995 8888889999854 99999 Q ss_pred cCCC-CCchhhhcccC Q 005625 672 VYVH-PIPLNFLPSYK 686 (687) Q Consensus 672 PSl~-gFGLviLEa~~ 686 (687) ||.+ +||++++||.+ T Consensus 306 ~s~~E~~g~~~lEAma 321 (392) T cd03805 306 TPSNEHFGIVPLEAMY 321 (392) T ss_pred CCCcCCCCchHHHHHH Confidence 9999 99999999975 No 22 >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). Probab=99.91 E-value=6.8e-23 Score=215.42 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=193.5 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++++. .+.||..+++.+++++|++ .|+ +|.++|...... ...+..+ . T Consensus 1 kIl~~~~~-----------~~~GG~~~~~~~l~~~L~~--------~~~----~v~~i~~~~~~~---~~~~~~~----~ 50 (358) T cd03812 1 KILHIVGT-----------MNRGGIETFIMNYYRNLDR--------SKI----QFDFLVTSKEEG---DYDDEIE----K 50 (358) T ss_pred CEEEEeCC-----------CCCccHHHHHHHHHHhcCc--------cce----EEEEEEeCCCCc---chHHHHH----H Confidence 57888754 1689999999999999986 799 999998642111 0111111 1 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcE-EEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQ-CTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~-V~T~H 438 (687) .++.+++++.... ..+.+ ...+.+.+ + +.+||+||+|+...+.++.++++..+.|. +.+.| T Consensus 51 ~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~-~--~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 112 (358) T cd03812 51 LGGKIYYIPARKK-----------NPLKY----FKKLYKLI-K--KNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSH 112 (358) T ss_pred cCCeEEEecCCCc-----------cHHHH----HHHHHHHH-h--cCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEec Confidence 3667777654332 11222 12222222 3 47899999999877777777777788886 56777 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) ............ ... ...+...++.||.++++|...... .. + .... T Consensus 113 ~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~i~~s~~~~~~-------~~-----------~-----~~~~ 158 (358) T cd03812 113 NTSDSHDKKKKI--------LKY---KVLRKLINRLATDYLACSEEAGKW-------LF-----------G-----KVKN 158 (358) T ss_pred cccccccccchh--------hHH---HHHHHHHHhcCCEEEEcCHHHHHH-------HH-----------h-----CCCc Confidence 653322111000 000 123456788999999988654331 10 0 0113 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .|+.|||||+|.+.|.+...... ..+ ......++++|+++||+.+.||++.|++|++.+. T Consensus 159 ~~~~vi~ngvd~~~~~~~~~~~~-------~~~-------------~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358) T cd03812 159 KKFKVIPNGIDLEKFIFNEEIRK-------KRR-------------ELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358) T ss_pred ccEEEEeccCcHHHcCCCchhhh-------HHH-------------HcCCCCCCEEEEEEeccccccChHHHHHHHHHHH Confidence 48999999999988765433211 011 1123457789999999999999999999999987 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CC Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PI 677 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gF 677 (687) +..++.+++++|++.. .+.+++.++++++.++|.|+|+ .+++.++|+.| |++|+||.+ || T Consensus 219 ~~~~~~~l~ivG~g~~------------~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~a----di~v~ps~~E~~ 279 (358) T cd03812 219 KKNPNAKLLLVGDGEL------------EEEIKKKVKELGLEDKVIFLGV---RNDVPELLQAM----DVFLFPSLYEGL 279 (358) T ss_pred HhCCCeEEEEEeCCch------------HHHHHHHHHhcCCCCcEEEecc---cCCHHHHHHhc----CEEEecccccCC Confidence 7667889999985421 2356677889999999999995 56889999864 999999999 99 Q ss_pred chhhhcccC Q 005625 678 PLNFLPSYK 686 (687) Q Consensus 678 GLviLEa~~ 686 (687) |++++||.+ T Consensus 280 ~~~~lEAma 288 (358) T cd03812 280 PLVLIEAQA 288 (358) T ss_pred CHHHHHHHH Confidence 999999976 No 23 >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Probab=99.91 E-value=7.6e-23 Score=225.06 Aligned_cols=202 Identities=14% Similarity=0.148 Sum_probs=148.6 Q ss_pred CCCceEEEeCCCChhHHHHHHHH--cCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecC Q 005625 405 QGFPDFIIGNYSDGNLVASLLAY--KMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITST 482 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr--~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS 482 (687) +.+||+||+|++..+.++..++. .++.|.++|+|+........ ...+. ......+++||+|+|+| T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~~--------~~~~~-----~~~~~~~~~ad~vv~~S 182 (406) T PRK15427 116 PFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREV--------LNHYT-----PEYQQLFRRGDLMLPIS 182 (406) T ss_pred cCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEcccccccchh--------hhhhh-----HHHHHHHHhCCEEEECC Confidence 46899999999988887887776 45668899999864321100 00111 01235678999999998 Q ss_pred HHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccc Q 005625 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (687) Q Consensus 483 ~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~ 562 (687) ..... +...+ ++...|+.|||||||.+.|.+.... T Consensus 183 ~~~~~-------~l~~~---------------g~~~~ki~vi~nGvd~~~f~~~~~~----------------------- 217 (406) T PRK15427 183 DLWAG-------RLQKM---------------GCPPEKIAVSRMGVDMTRFSPRPVK----------------------- 217 (406) T ss_pred HHHHH-------HHHHc---------------CCCHHHEEEcCCCCCHHHcCCCccc----------------------- Confidence 75432 11110 1112389999999999887653210 Q ss_pred cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCc Q 005625 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (687) Q Consensus 563 ~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~ 642 (687) ...+...|+++||+.+.||++.|++|++.+....++.+++|+|++. . .++++++++++|+.++ T Consensus 218 -----~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~---------~---~~~l~~~~~~~~l~~~ 280 (406) T PRK15427 218 -----APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP---------W---ERRLRTLIEQYQLEDV 280 (406) T ss_pred -----cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch---------h---HHHHHHHHHHcCCCCe Confidence 0123346999999999999999999999887656678899988652 2 2467788999999999 Q ss_pred EEEcCcccCcccHHHHHHHhhcCCcEEEEcCC------C-CCchhhhcccC Q 005625 643 FRWIAAQTNRARNGELYRYIADTKGAFVQVYV------H-PIPLNFLPSYK 686 (687) Q Consensus 643 V~flG~~l~~~dl~elYr~aad~~dVFVlPSl------~-gFGLviLEa~~ 686 (687) |.|+|+ ++++++.++|+.+ |+||+||. + |||++++||.+ T Consensus 281 V~~~G~-~~~~el~~~l~~a----Dv~v~pS~~~~~g~~Eg~p~~llEAma 326 (406) T PRK15427 281 VEMPGF-KPSHEVKAMLDDA----DVFLLPSVTGADGDMEGIPVALMEAMA 326 (406) T ss_pred EEEeCC-CCHHHHHHHHHhC----CEEEECCccCCCCCccCccHHHHHHHh Confidence 999995 8999999999964 99999997 6 99999999975 No 24 >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. Probab=99.91 E-value=1.6e-22 Score=212.30 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=190.0 Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccc Q 005625 300 DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQW 379 (687) Q Consensus 300 dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~ 379 (687) +.||..+++.+++++|.+ +|| +|.|+|...+. ...++ ..++.+++++....+. T Consensus 8 ~~gG~e~~~~~l~~~L~~--------~g~----~v~v~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~----- 60 (355) T cd03819 8 ESGGVERGTLELARALVE--------RGH----RSLVASAGGRL------VAELE----AEGSRHIKLPFISKNP----- 60 (355) T ss_pred ccCcHHHHHHHHHHHHHH--------cCC----EEEEEcCCCch------HHHHH----hcCCeEEEccccccch----- Confidence 459999999999999887 899 99999853111 11222 1366777777654321 Q ss_pred cccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccc Q 005625 380 ISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKY 459 (687) Q Consensus 380 isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y 459 (687) +..+. +...+.+.+. +.+||+||+|+....+.+.++++..++|++++.|+...... T Consensus 61 ------~~~~~-~~~~l~~~~~---~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------- 116 (355) T cd03819 61 ------LRILL-NVARLRRLIR---EEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNF-------------- 116 (355) T ss_pred ------hhhHH-HHHHHHHHHH---HcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHH-------------- Confidence 11111 1123333343 36899999999887888888888999999999997632110 Q ss_pred cccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChH Q 005625 460 HFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEK 539 (687) Q Consensus 460 ~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~ 539 (687) .....+..||.+++.|...... +..+ + ++...|+.+||||+|.+.|.+.... T Consensus 117 -------~~~~~~~~~~~vi~~s~~~~~~-------~~~~--------~------~~~~~k~~~i~ngi~~~~~~~~~~~ 168 (355) T cd03819 117 -------RYNAIMARGDRVIAVSNFIADH-------IREN--------Y------GVDPDRIRVIPRGVDLDRFDPGAVP 168 (355) T ss_pred -------HHHHHHHhcCEEEEeCHHHHHH-------HHHh--------c------CCChhhEEEecCCccccccCccccc Confidence 0123467899999988644321 1100 1 1223489999999999888654322 Q ss_pred HHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCC Q 005625 540 QKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSK 619 (687) Q Consensus 540 ~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~ 619 (687) ..+... +++ .+...+++++|+++||+.+.||++.+++|+..+....++.+++++|++.. T Consensus 169 ~~~~~~----~~~------------~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~----- 227 (355) T cd03819 169 PERILA----LAR------------EWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQG----- 227 (355) T ss_pred hHHHHH----HHH------------HcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcc----- Confidence 111000 111 11234567899999999999999999999998876556788999986532 Q ss_pred ChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcC-CC-CCchhhhcccC Q 005625 620 DREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVY-VH-PIPLNFLPSYK 686 (687) Q Consensus 620 d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPS-l~-gFGLviLEa~~ 686 (687) .....+.+.+.++++++.++|.|+|+ .+++.++|+.+ |+|++|| .. +||++++||.+ T Consensus 228 ---~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~l~~a----d~~i~ps~~~e~~~~~l~EA~a 286 (355) T cd03819 228 ---RRFYYAELLELIKRLGLQDRVTFVGH---CSDMPAAYALA----DIVVSASTEPEAFGRTAVEAQA 286 (355) T ss_pred ---cchHHHHHHHHHHHcCCcceEEEcCC---cccHHHHHHhC----CEEEecCCCCCCCchHHHHHHh Confidence 11233456678899999999999995 56889998854 9999999 67 99999999975 No 25 >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Probab=99.91 E-value=1.3e-22 Score=236.10 Aligned_cols=382 Identities=13% Similarity=0.129 Sum_probs=224.1 Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCchhH-------HHHhhhcCCccccCCcHHHHHHHHHHHHHhhcCC-C--cchHhHH Q 005625 202 SISRLQSSLSKAEDHLSKLPPDTPFSQF-------EYVLQGMGFEKGWGDTAEHVLEMMHLLLDILQAP-D--PSTLEKF 271 (687) Q Consensus 202 ~~~~l~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~g~e~gwg~~~~r~~e~~~~l~~~l~~p-~--~~~le~f 271 (687) ..+.=..++++|.+..+.=. .-|.+. -.-+|.+|=|----++--|+.-|=|+++.+=+-- - .+-=|.+ T Consensus 203 ~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (694) T PRK15179 203 ALWRARDVLQAGLDAIGDGA--RKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESF 280 (694) T ss_pred CHHHHHHHHHHHHHhhCcch--HHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCC Confidence 34445556666665554333 122222 2246777777665666667777777776654211 0 0111222 Q ss_pred hcCCCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCC----------CCCeEEEEeccC Q 005625 272 LGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLD----------ISPKILIVTRLI 341 (687) Q Consensus 272 ~~r~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~----------~~~~V~VlTr~i 341 (687) ++ ||+++... ...||.+.++++++.+|.. .|.. ....|.+++... T Consensus 281 ~~------rIl~vi~s-----------l~~GGAEr~~~~La~~l~~--------~~~~~~~~~g~g~~~~~~V~~~~~~~ 335 (694) T PRK15179 281 VG------PVLMINGS-----------LGAGGAERQFVNTAVALQS--------AIQQGQSIAGYGVLGPVQVVCRSLRS 335 (694) T ss_pred cc------eEEEEeCC-----------CCCCcHHHHHHHHHHHHHh--------cccCcccccCccCCCCcEEEEEeccc Confidence 22 58888643 2569999999999999988 4320 012566654321 Q ss_pred CCCCCCccccccccccCCCCeEEEEecCCCCcccc--cccccccc----chh-hHHHHHHHHHHHHHHhcCCCceEEEeC Q 005625 342 PDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGIL--RQWISRFD----VWP-YLETFTEDVGSEITAELQGFPDFIIGN 414 (687) Q Consensus 342 p~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~--~~~isr~~----iwp-~Le~f~~~~~~~L~~~~~~~PDLIH~H 414 (687) .+..+ .+...++. .|+.|..++..+..+.. ..+...+. ..| ........+.+.+ + +.+|||||+| T Consensus 336 ~~g~~-~~~~~L~~----~Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~l-k--~~kpDIVH~h 407 (694) T PRK15179 336 REGAD-FFAATLAD----AGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVM-R--SSVPSVVHIW 407 (694) T ss_pred ccCcc-hHHHHHHh----CCCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHH-H--HcCCcEEEEe Confidence 11101 11122221 47788887665421110 00000000 001 0111222333334 3 3689999999 Q ss_pred CCChhHHHHHHHHcCCCcEEE-EecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhcccccc Q 005625 415 YSDGNLVASLLAYKMGITQCT-IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTV 493 (687) Q Consensus 415 ys~aglvA~llAr~lgVP~V~-T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v 493 (687) .+.+++++.++++..++|+|+ |.|++....+. . .|.. .|... ...+....++.+|++|..... T Consensus 408 ~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~--~-~~~~---~~~~l----~~~l~~~~~~i~Vs~S~~~~~------ 471 (694) T PRK15179 408 QDGSIFACALAALLAGVPRIVLSVRTMPPVDRP--D-RYRV---EYDII----YSELLKMRGVALSSNSQFAAH------ 471 (694) T ss_pred CCcHHHHHHHHHHHcCCCEEEEEeCCCccccch--h-HHHH---HHHHH----HHHHHhcCCeEEEeCcHHHHH------ Confidence 999999999999999999876 67876432211 1 1110 11110 111222234455666644322 Q ss_pred ccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCC Q 005625 494 GQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP 573 (687) Q Consensus 494 ~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kP 573 (687) .+.. .+ ++...|+.|||||||.+.|.+......+ +... ......+.+ T Consensus 472 -~l~~--------~~------g~~~~kI~VI~NGVd~~~f~~~~~~~~~----~~~~--------------~~~~~~~~~ 518 (694) T PRK15179 472 -RYAD--------WL------GVDERRIPVVYNGLAPLKSVQDDACTAM----MAQF--------------DARTSDARF 518 (694) T ss_pred -HHHH--------Hc------CCChhHEEEECCCcCHHhcCCCchhhHH----HHhh--------------ccccCCCCe Confidence 1110 00 1222399999999998888653322110 0000 001133567 Q ss_pred EEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcc Q 005625 574 IVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRA 653 (687) Q Consensus 574 iIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~ 653 (687) +|+++||+++.||++.||+|++++....++.+|+|+|++.. .++++++++++|+.++|+|+|+ . + T Consensus 519 vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~------------~~~L~~l~~~lgL~~~V~flG~-~--~ 583 (694) T PRK15179 519 TVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL------------LESVREFAQRLGMGERILFTGL-S--R 583 (694) T ss_pred EEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc------------hHHHHHHHHHcCCCCcEEEcCC-c--c Confidence 89999999999999999999998876667889999986522 2457789999999999999996 3 4 Q ss_pred cHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 654 RNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 654 dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +++.+|+.+ |+||+||.+ |||++++||.+ T Consensus 584 dv~~ll~aa----Dv~VlpS~~Egfp~vlLEAMA 613 (694) T PRK15179 584 RVGYWLTQF----NAFLLLSRFEGLPNVLIEAQF 613 (694) T ss_pred hHHHHHHhc----CEEEeccccccchHHHHHHHH Confidence 799999865 999999999 99999999975 No 26 >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=99.90 E-value=6.5e-22 Score=207.98 Aligned_cols=287 Identities=14% Similarity=0.134 Sum_probs=182.9 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+|++.+|+. |..||+.+++.+++++|.+ +|| +|.|+|....... . + ... T Consensus 1 ~i~~i~~~~~~--------~~~gG~~~~~~~la~~L~~--------~g~----~v~v~~~~~~~~~------~-~--~~~ 51 (363) T cd04955 1 KIAIIGTRGIP--------AKYGGFETFVEELAPRLVA--------RGH----EVTVYCRSPYPKQ------K-E--TEY 51 (363) T ss_pred CeEEEecCcCC--------cccCcHHHHHHHHHHHHHh--------cCC----CEEEEEccCCCCC------c-c--ccc Confidence 68999998752 5689999999999999987 899 9999987532211 0 1 112 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecC Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHA 439 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~Ha 439 (687) .+++++++|.....+. .. +.+ .+ ..+...+ . ...++|+||+..... ..+..++++.++|.+++.|+ T Consensus 52 ~~i~~~~~~~~~~~~~-~~-------~~~--~~-~~~~~~~-~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~ 117 (363) T cd04955 52 NGVRLIHIPAPEIGGL-GT-------IIY--DI-LAILHAL-F-VKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDG 117 (363) T ss_pred CCceEEEcCCCCccch-hh-------hHH--HH-HHHHHHH-h-ccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccC Confidence 4788888886542111 00 000 00 0111111 1 135666666654444 33444556679999999998 Q ss_pred CccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCC Q 005625 440 LEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (687) Q Consensus 440 L~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~p 519 (687) +...+. .|.... ..+. ...+..+++.||.||++|..... .+.. .| .. T Consensus 118 ~~~~~~-----~~~~~~--~~~~--~~~~~~~~~~ad~ii~~s~~~~~-------~~~~--------~~---------~~ 164 (363) T cd04955 118 LEWKRA-----KWGRPA--KRYL--KFGEKLAVKFADRLIADSPGIKE-------YLKE--------KY---------GR 164 (363) T ss_pred cceeec-----ccccch--hHHH--HHHHHHHHhhccEEEeCCHHHHH-------HHHH--------hc---------CC Confidence 754321 121110 0111 12467788999999998865433 1100 01 12 Q ss_pred cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 520 KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 520 K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) +..+||||+|...+.+.. ..+ .. + ..+++++++++||+.+.||++.|++|++++.. T Consensus 165 ~~~~i~ngv~~~~~~~~~--~~~-----~~----------------~-~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~ 220 (363) T cd04955 165 DSTYIPYGADHVVSSEED--EIL-----KK----------------Y-GLEPGRYYLLVGRIVPENNIDDLIEAFSKSNS 220 (363) T ss_pred CCeeeCCCcChhhcchhh--hhH-----Hh----------------c-CCCCCcEEEEEecccccCCHHHHHHHHHhhcc Confidence 239999999987665411 110 10 1 11234678899999999999999999987643 Q ss_pred cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHH-HHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC--C Q 005625 600 LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELM-KTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH--P 676 (687) Q Consensus 600 l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li-~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~--g 676 (687) +++|+++|++.+ +. .+.+.+ +++++.++|+|+|+ ++.+++.++|+.+ |+||+||.. + T Consensus 221 ---~~~l~ivG~~~~-----~~-------~~~~~~~~~~~~~~~V~~~g~-~~~~~~~~~~~~a----d~~v~ps~~~e~ 280 (363) T cd04955 221 ---GKKLVIVGNADH-----NT-------PYGKLLKEKAAADPRIIFVGP-IYDQELLELLRYA----ALFYLHGHSVGG 280 (363) T ss_pred ---CceEEEEcCCCC-----cc-------hHHHHHHHHhCCCCcEEEccc-cChHHHHHHHHhC----CEEEeCCccCCC Confidence 688999986522 01 112222 36788999999995 8888888888854 899999998 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 281 ~~~~~~EAma 290 (363) T cd04955 281 TNPSLLEAMA 290 (363) T ss_pred CChHHHHHHH Confidence 9999999975 No 27 >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Probab=99.90 E-value=2.3e-22 Score=218.92 Aligned_cols=294 Identities=14% Similarity=0.128 Sum_probs=194.3 Q ss_pred ccceEEEEccCCCCCCCCCCCCC--CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccc Q 005625 277 MVFNVVILSPHGYFGQANVLGLP--DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLE 354 (687) Q Consensus 277 ~~~rIliiS~Hg~f~~~~vlG~P--dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE 354 (687) |+-||+++...- +--| ..||.++||.++++.|.. +|+|+|...++- + +.| T Consensus 1 ~~~~~~~~~~~~-------~~~p~~~~g~ve~~~~~~~~~l~~---------------~~~~~~~~~~~~--~----~~~ 52 (380) T PRK15484 1 MIDKIIFTVTPI-------FSIPPRGAAAVETWIYQVAKRTSI---------------PNRIACIKNPGY--P----EYT 52 (380) T ss_pred CCceEEEEeccC-------CCCCCccccHHHHHHHHhhhhccC---------------CeeEEEecCCCC--C----chh Confidence 566888776442 2223 379999999999988744 889999875541 1 111 Q ss_pred cccCCCCeEEEEecCCCCcc-ccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcE Q 005625 355 RVSGTEHTHILRVPFRSEKG-ILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQ 433 (687) Q Consensus 355 ~i~~~~~v~IlRvP~~~~~~-~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~ 433 (687) ... +|+.|+++++..... ...+|.+. ..++ |...+.+.+......++||||+|... .+.+.+.++..++|+ T Consensus 53 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~vi~v~~~~-~~~~~~~~~~~~~~~ 124 (380) T PRK15484 53 KVN--DNCDIHYIGFSRIYKRLFQKWTRL-DPLP----YSQRILNIAHKFTITKDSVIVIHNSM-KLYRQIRERAPQAKL 124 (380) T ss_pred hcc--CCCceEEEEeccccchhhhhhhcc-Cchh----HHHHHHHHHHhcCCCCCcEEEEeCcH-HhHHHHHhhCCCCCE Confidence 111 378888887754211 11223221 2233 33344444333223579999999744 455666677778999 Q ss_pred EEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecc Q 005625 434 CTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHG 513 (687) Q Consensus 434 V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~g 513 (687) |.+.|.... ...++.++.||++|..... .+.. T Consensus 125 v~~~h~~~~--------------------------~~~~~~~~~ii~~S~~~~~-------~~~~--------------- 156 (380) T PRK15484 125 VMHMHNAFE--------------------------PELLDKNAKIIVPSQFLKK-------FYEE--------------- 156 (380) T ss_pred EEEEecccC--------------------------hhHhccCCEEEEcCHHHHH-------HHHh--------------- Confidence 999995310 0123467899998865432 1211 Q ss_pred cccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHH Q 005625 514 IDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVEC 593 (687) Q Consensus 514 i~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeA 593 (687) .....++.|||||+|.+.|.+......+ .+ +..++++++|+++||+.+.||++.|++| T Consensus 157 -~~~~~~i~vIpngvd~~~~~~~~~~~~~-----~~----------------~~~~~~~~~il~~Grl~~~Kg~~~Li~A 214 (380) T PRK15484 157 -RLPNADISIVPNGFCLETYQSNPQPNLR-----QQ----------------LNISPDETVLLYAGRISPDKGILLLMQA 214 (380) T ss_pred -hCCCCCEEEecCCCCHHHcCCcchHHHH-----HH----------------hCCCCCCeEEEEeccCccccCHHHHHHH Confidence 0113489999999999888764432211 11 1234467899999999999999999999 Q ss_pred HhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcC Q 005625 594 YGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVY 673 (687) Q Consensus 594 fa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPS 673 (687) +.++.+..++.+|+|+|++.. ...++...+.+++++++++++ ++|+|+|+ ++++++.++|+.+ |+||+|| T Consensus 215 ~~~l~~~~p~~~lvivG~g~~---~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~-~~~~~l~~~~~~a----Dv~v~pS 284 (380) T PRK15484 215 FEKLATAHSNLKLVVVGDPTA---SSKGEKAAYQKKVLEAAKRIG--DRCIMLGG-QPPEKMHNYYPLA----DLVVVPS 284 (380) T ss_pred HHHHHHhCCCeEEEEEeCCcc---ccccchhHHHHHHHHHHHhcC--CcEEEeCC-CCHHHHHHHHHhC----CEEEeCC Confidence 998876667889999986532 111222334456677777775 68999995 7889999999854 9999999 Q ss_pred CC--CCchhhhcccC Q 005625 674 VH--PIPLNFLPSYK 686 (687) Q Consensus 674 l~--gFGLviLEa~~ 686 (687) .+ |||++++||.+ T Consensus 285 ~~~E~f~~~~lEAma 299 (380) T PRK15484 285 QVEEAFCMVAVEAMA 299 (380) T ss_pred CCccccccHHHHHHH Confidence 75 99999999975 No 28 >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. Probab=99.90 E-value=8.8e-22 Score=203.60 Aligned_cols=300 Identities=14% Similarity=0.100 Sum_probs=191.7 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||++++++- .|..||...++.+++++|.+ +|| +|.|+|....... ...... T Consensus 1 kIl~i~~~~---------~~~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~------~~~~~~-- 51 (375) T cd03821 1 KILHVIPSF---------DPKYGGPVRVVLNLSKALAK--------LGH----EVTVATTDAGGDP------LLVALN-- 51 (375) T ss_pred CeEEEcCCC---------CcccCCeehHHHHHHHHHHh--------cCC----cEEEEecCCCCcc------chhhcc-- Confidence 688888762 27899999999999999877 899 8999986422210 001000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCC--ChhHHHHHHHHcCCCcEEEEe Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS--DGNLVASLLAYKMGITQCTIA 437 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys--~aglvA~llAr~lgVP~V~T~ 437 (687) +........ ... ....+.. ..+.+ .....+ .....+||+||+|.. .....+..++++.++|+|++. T Consensus 52 -~~~~~~~~~-~~~-~~~~~~~--~~~~~------~~~~~~-~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 119 (375) T cd03821 52 -GVPVKLFSI-NVA-YGLNLAR--YLFPP------SLLAWL-RLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSP 119 (375) T ss_pred -Cceeeeccc-chh-hhhhhhh--hccCh------hHHHHH-HHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEc Confidence 110000000 000 0000000 00111 111112 222468999999973 345566677788999999999 Q ss_pred cCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccC Q 005625 438 HALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 517 (687) Q Consensus 438 HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~ 517 (687) |+........ ...+.. ....+..+...++.++.|++++.++... ... ... T Consensus 120 ~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~i~~~s~~~~~~-------~~~----------------~~~ 169 (375) T cd03821 120 HGMLDPWALP-HKALKK------RLAWFLFERRLLQAAAAVHATSEQEAAE-------IRR----------------LGL 169 (375) T ss_pred cccccccccc-cchhhh------HHHHHHHHHHHHhcCCEEEECCHHHHHH-------HHh----------------hCC Confidence 9864321110 001110 1111223567788999999988655431 100 112 Q ss_pred CCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhc Q 005625 518 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKN 597 (687) Q Consensus 518 ~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l 597 (687) ..++.+||||+|.+.|.+......| . .+....++++|+++||+.+.||++.+++|+.++ T Consensus 170 ~~~~~vi~~~~~~~~~~~~~~~~~~-----~----------------~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l 228 (375) T cd03821 170 KAPIAVIPNGVDIPPFAALPSRGRR-----R----------------KFPILPDKRIILFLGRLHPKKGLDLLIEAFAKL 228 (375) T ss_pred cccEEEcCCCcChhccCcchhhhhh-----h----------------hccCCCCCcEEEEEeCcchhcCHHHHHHHHHHh Confidence 3589999999999888664322111 1 112345778999999999999999999999988 Q ss_pred cccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 598 SQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 598 ~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) ....++.+++++|.+.. .. ...+..+++++++.++|.|+|+ ++++++..+|+.+ |+||+||.+ | T Consensus 229 ~~~~~~~~l~i~G~~~~-------~~---~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~a----dv~v~ps~~e~ 293 (375) T cd03821 229 AERFPDWHLVIAGPDEG-------GY---RAELKQIAAALGLEDRVTFTGM-LYGEDKAAALADA----DLFVLPSHSEN 293 (375) T ss_pred hhhcCCeEEEEECCCCc-------ch---HHHHHHHHHhcCccceEEEcCC-CChHHHHHHHhhC----CEEEeccccCC Confidence 76667889999885421 11 1234556789999999999995 8888999999864 999999999 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 294 ~~~~~~Eama 303 (375) T cd03821 294 FGIVVAEALA 303 (375) T ss_pred CCcHHHHHHh Confidence 9999999975 No 29 >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Probab=99.90 E-value=2.8e-23 Score=219.19 Aligned_cols=287 Identities=16% Similarity=0.203 Sum_probs=204.6 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) ++|+|+|+|= +|.+||...||..++..|-+ .|| +|.|+|....+..|- ..+ T Consensus 1 ~~i~mVsdff---------~P~~ggveshiy~lSq~li~--------lgh----kVvvithayg~r~gi------ryl-- 51 (426) T KOG1111|consen 1 SRILMVSDFF---------YPSTGGVESHIYALSQCLIR--------LGH----KVVVITHAYGNRVGI------RYL-- 51 (426) T ss_pred CcceeeCccc---------ccCCCChhhhHHHhhcchhh--------cCC----eEEEEeccccCccce------eee-- Confidence 4799999983 69999999999999988877 899 999999887765432 222 Q ss_pred CCCeEEEEecCCCCc--cccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhH--HHHHHHHcCCCcEE Q 005625 359 TEHTHILRVPFRSEK--GILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNL--VASLLAYKMGITQC 434 (687) Q Consensus 359 ~~~v~IlRvP~~~~~--~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~agl--vA~llAr~lgVP~V 434 (687) +.+..|+.+|+...- .-++. -+.-.|.+. ..+++ .+..|||+|.+.+.+ =|.+.|+.+|...| T Consensus 52 t~glkVyylp~~v~~n~tT~pt---v~~~~Pllr-------~i~lr---E~I~ivhghs~fS~lahe~l~hartMGlktV 118 (426) T KOG1111|consen 52 TNGLKVYYLPAVVGYNQTTFPT---VFSDFPLLR-------PILLR---ERIEIVHGHSPFSYLAHEALMHARTMGLKTV 118 (426) T ss_pred cCCceEEEEeeeeeecccchhh---hhccCcccc-------hhhhh---hceEEEecCChHHHHHHHHHHHHHhcCceEE Confidence 347889998885321 00111 111122221 12223 589999999876654 35677899999999 Q ss_pred EEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeeccc Q 005625 435 TIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGI 514 (687) Q Consensus 435 ~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi 514 (687) +|=|++.-. .++.-...++.. ..++...|.+||+|+.-..+ + ++.| T Consensus 119 fTdHSlfGf----ad~~si~~n~ll---------~~sL~~id~~IcVshtsken---t-----------------vlr~- 164 (426) T KOG1111|consen 119 FTDHSLFGF----ADIGSILTNKLL---------PLSLANIDRIICVSHTSKEN---T-----------------VLRG- 164 (426) T ss_pred Eeccccccc----cchhhhhhccee---------eeeecCCCcEEEEeecCCCc---e-----------------EEEe- Confidence 999997321 111100111112 23567889999988653321 1 1111 Q ss_pred ccCCC-cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHH Q 005625 515 DVFDP-KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVEC 593 (687) Q Consensus 515 ~v~~p-K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeA 593 (687) . .+| |+.+|||.++.+.|.|.+... ...+...|..++||..+||+|.|++. T Consensus 165 ~-L~p~kvsvIPnAv~~~~f~P~~~~~---------------------------~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426) T KOG1111|consen 165 A-LAPAKVSVIPNAVVTHTFTPDAADK---------------------------PSADIITIVVASRLVYRKGIDLLLEI 216 (426) T ss_pred c-cCHhHeeeccceeeccccccCcccc---------------------------CCCCeeEEEEEeeeeeccchHHHHHH Confidence 1 245 999999999999999965321 01233578999999999999999999 Q ss_pred HhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcC Q 005625 594 YGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVY 673 (687) Q Consensus 594 fa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPS 673 (687) .+++....++++++++|.|+- +. .+++..+++.+.++|.++| .++++++.+.|. ++|+|+.|| T Consensus 217 Ip~vc~~~p~vrfii~GDGPk---------~i---~lee~lEk~~l~~rV~~lG-~v~h~~Vr~vl~----~G~IFlntS 279 (426) T KOG1111|consen 217 IPSVCDKHPEVRFIIIGDGPK---------RI---DLEEMLEKLFLQDRVVMLG-TVPHDRVRDVLV----RGDIFLNTS 279 (426) T ss_pred HHHHHhcCCCeeEEEecCCcc---------cc---hHHHHHHHhhccCceEEec-ccchHHHHHHHh----cCcEEeccH Confidence 999988889999998775431 22 3455678899999999999 599999999997 469999999 Q ss_pred CC-CCchhhhcccC Q 005625 674 VH-PIPLNFLPSYK 686 (687) Q Consensus 674 l~-gFGLviLEa~~ 686 (687) +. .||++++||.| T Consensus 280 lTEafc~~ivEAaS 293 (426) T KOG1111|consen 280 LTEAFCMVIVEAAS 293 (426) T ss_pred HHHHHHHHHHHHHh Confidence 99 99999999986 No 30 >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. Probab=99.90 E-value=5e-22 Score=212.82 Aligned_cols=286 Identities=15% Similarity=0.149 Sum_probs=185.8 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+.+.++. +.||.+.++.+++++|.+ .|+ ++.|++.. +. + ....++.. T Consensus 3 ~il~ii~~~-----------~~GG~e~~~~~l~~~l~~--------~~~----~~~v~~~~--~~-~-~~~~~~~~---- 51 (374) T TIGR03088 3 LIVHVVYRF-----------DVGGLENGLVNLINHLPA--------DRY----RHAVVALT--EV-S-AFRKRIQR---- 51 (374) T ss_pred eEEEEeCCC-----------CCCcHHHHHHHHHhhccc--------ccc----ceEEEEcC--CC-C-hhHHHHHh---- Confidence 788887652 579999999999999877 688 77777632 11 1 11111111 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcE-EEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQ-CTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~-V~T~H 438 (687) .++.+++++..... . +. +...+.+.+.+ .+|||||+|... ...+.++++..++|. ++|.| T Consensus 52 ~~i~~~~~~~~~~~----------~-~~----~~~~l~~~l~~---~~~Divh~~~~~-~~~~~~~~~~~~~~~~i~~~h 112 (374) T TIGR03088 52 PDVAFYALHKQPGK----------D-VA----VYPQLYRLLRQ---LRPDIVHTRNLA-ALEAQLPAALAGVPARIHGEH 112 (374) T ss_pred cCceEEEeCCCCCC----------C-hH----HHHHHHHHHHH---hCCCEEEEcchh-HHHHHHHHHhcCCCeEEEeec Confidence 36788888754321 1 11 11233344433 689999999753 344566677788885 66777 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) +....... +..|. +.+ ..+...+.+|.+|++|..... .+.. .+ ++.. T Consensus 113 ~~~~~~~~--~~~~~-----~~~-----~~~~~~~~~~~~i~vs~~~~~-------~~~~--------~~------~~~~ 159 (374) T TIGR03088 113 GRDVFDLD--GSNWK-----YRW-----LRRLYRPLIHHYVAVSRDLED-------WLRG--------PV------KVPP 159 (374) T ss_pred Ccccccch--hhHHH-----HHH-----HHHHHHhcCCeEEEeCHHHHH-------HHHH--------hc------CCCh Confidence 65321111 11111 111 123455678999998875432 1110 00 1223 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .|+.+||||||.+.|.|....... ..+. .....++++|+++||+.+.||++.|++|+..+. T Consensus 160 ~~~~vi~ngvd~~~~~~~~~~~~~------~~~~-------------~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374) T TIGR03088 160 AKIHQIYNGVDTERFHPSRGDRSP------ILPP-------------DFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374) T ss_pred hhEEEeccCccccccCCCccchhh------hhHh-------------hcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH Confidence 489999999999888765322110 0000 112456789999999999999999999998875 Q ss_pred ccCC----CceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCC Q 005625 599 QLRE----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYV 674 (687) Q Consensus 599 ~l~~----~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl 674 (687) ...+ +..|+++|++. .. +.+++.++++++.+.|.|+|+ .+++.++|+.+ |+||+||. T Consensus 221 ~~~~~~~~~~~l~i~G~g~---------~~---~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~a----di~v~pS~ 281 (374) T TIGR03088 221 RQLPEGAERLRLVIVGDGP---------AR---GACEQMVRAAGLAHLVWLPGE---RDDVPALMQAL----DLFVLPSL 281 (374) T ss_pred HhCcccccceEEEEecCCc---------hH---HHHHHHHHHcCCcceEEEcCC---cCCHHHHHHhc----CEEEeccc Confidence 4332 57888887542 11 356778899999999999994 46889999854 99999999 Q ss_pred C-CCchhhhcccC Q 005625 675 H-PIPLNFLPSYK 686 (687) Q Consensus 675 ~-gFGLviLEa~~ 686 (687) + |||++++||.+ T Consensus 282 ~Eg~~~~~lEAma 294 (374) T TIGR03088 282 AEGISNTILEAMA 294 (374) T ss_pred cccCchHHHHHHH Confidence 9 99999999975 No 31 >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. Probab=99.90 E-value=1.7e-22 Score=217.31 Aligned_cols=209 Identities=16% Similarity=0.087 Sum_probs=138.4 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) ..+||+||+|++....+. .+++..++|.|++.|+.... .....|. .....++.+|.++++|.+ T Consensus 83 ~~~~Dvv~~h~~~~~~~~-~~~~~~~~~~i~~~H~~~~~---~~~~~~~-------------~~~~~~~~~d~~i~~~~~ 145 (372) T cd03792 83 DLDADVVVIHDPQPLALP-LFKKKRGRPWIWRCHIDLSS---PNRRVWD-------------FLQPYIEDYDAAVFHLPE 145 (372) T ss_pred cCCCCEEEECCCCchhHH-HhhhcCCCeEEEEeeeecCC---CcHHHHH-------------HHHHHHHhCCEEeecHHH Confidence 468999999987643322 22333489999999974321 1111121 113456789998887732 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCC--CCChHHHhhhhhhhhhhhhhcCCCcccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYF--PYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~--p~~~~~~r~~~l~~~i~~ll~~~~~~~~ 562 (687) .+. .. +...++ |||||||...++ +...... ..+++ T Consensus 146 ~~~-------~~-------------------~~~~~~-vipngvd~~~~~~~~~~~~~~------~~~~~---------- 182 (372) T cd03792 146 YVP-------PQ-------------------VPPRKV-IIPPSIDPLSGKNRELSPADI------EYILE---------- 182 (372) T ss_pred hcC-------CC-------------------CCCceE-EeCCCCCCCccccCCCCHHHH------HHHHH---------- Confidence 221 11 112255 999999975422 2222211 11111 Q ss_pred cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCc Q 005625 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (687) Q Consensus 563 ~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~ 642 (687) .++.++++++|+++||+++.||++.|++|++.+....++++|+++|++.. .+.+... .+++++++.++.++ T Consensus 183 --~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~----~~~~~~~---~~~~~~~~~~~~~~ 253 (372) T cd03792 183 --KYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGAT----DDPEGWI---VYEEVLEYAEGDPD 253 (372) T ss_pred --HhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCC----CCchhHH---HHHHHHHHhCCCCC Confidence 12345678999999999999999999999998876667789999986532 0112221 23445557788999 Q ss_pred EEEcCcc-cCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 643 FRWIAAQ-TNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 643 V~flG~~-l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |.|+|+. ++++++.++|+.+ |+||+||.+ |||++++||.+ T Consensus 254 v~~~~~~~~~~~~~~~~~~~a----d~~v~~s~~Eg~g~~~lEA~a 295 (372) T cd03792 254 IHVLTLPPVSDLEVNALQRAS----TVVLQKSIREGFGLTVTEALW 295 (372) T ss_pred eEEEecCCCCHHHHHHHHHhC----eEEEeCCCccCCCHHHHHHHH Confidence 9999963 2788999999854 999999999 99999999975 No 32 >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center Probab=99.90 E-value=3.1e-22 Score=211.89 Aligned_cols=206 Identities=17% Similarity=0.220 Sum_probs=151.7 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) ..+||+||+|+...++.+..++++.|+|+|+|.|+........ +.... .+... ...+...++.||.||++|.. T Consensus 80 ~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~----~~~~~-~~~~~--~~~~~~~~~~~d~ii~~s~~ 152 (367) T cd05844 80 RHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLA----LLLRS-RWALY--ARRRRRLARRAALFIAVSQF 152 (367) T ss_pred hhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccch----hhccc-chhHH--HHHHHHHHHhcCEEEECCHH Confidence 3689999999887888888889999999999999764321111 00000 00000 12345678999999999865 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHV 564 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~ 564 (687) ... .+..+ ++...|+.++|||+|.+.|.+... T Consensus 153 ~~~-------~~~~~---------------~~~~~~i~vi~~g~d~~~~~~~~~-------------------------- 184 (367) T cd05844 153 IRD-------RLLAL---------------GFPPEKVHVHPIGVDTAKFTPATP-------------------------- 184 (367) T ss_pred HHH-------HHHHc---------------CCCHHHeEEecCCCCHHhcCCCCC-------------------------- Confidence 433 11110 112348999999999877654311 Q ss_pred cCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEE Q 005625 565 GTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (687) Q Consensus 565 g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~ 644 (687) ..+++.|+++||+.+.||++.|++|+..+.+..++++|+++|++. + .++++++++++|+.++|+ T Consensus 185 ----~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~---------~---~~~~~~~~~~~~~~~~v~ 248 (367) T cd05844 185 ----ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP---------L---LAALEALARALGLGGRVT 248 (367) T ss_pred ----CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch---------H---HHHHHHHHHHcCCCCeEE Confidence 124568999999999999999999999887666778999988541 1 245678899999999999 Q ss_pred EcCcccCcccHHHHHHHhhcCCcEEEEcCC------C-CCchhhhcccC Q 005625 645 WIAAQTNRARNGELYRYIADTKGAFVQVYV------H-PIPLNFLPSYK 686 (687) Q Consensus 645 flG~~l~~~dl~elYr~aad~~dVFVlPSl------~-gFGLviLEa~~ 686 (687) |+|. ++.+++.++|+.+ |+||+||. . |||++++||.+ T Consensus 249 ~~g~-~~~~~l~~~~~~a----d~~v~ps~~~~~~~~E~~~~~~~EA~a 292 (367) T cd05844 249 FLGA-QPHAEVRELMRRA----RIFLQPSVTAPSGDAEGLPVVLLEAQA 292 (367) T ss_pred ECCC-CCHHHHHHHHHhC----CEEEECcccCCCCCccCCchHHHHHHH Confidence 9995 8889999999864 99999997 5 89999999975 No 33 >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). Probab=99.89 E-value=1.4e-21 Score=212.39 Aligned_cols=289 Identities=15% Similarity=0.155 Sum_probs=173.9 Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccccccchhh Q 005625 309 LDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPY 388 (687) Q Consensus 309 ldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~ 388 (687) .+++++|.+ +|| +|.++|+..... .+ + |+++++++..+... ...++| T Consensus 14 ~~la~~L~~--------~G~----~v~~~~~~~~~~------~~-----~--~v~~~~~~~~~~~~--------~~~~~~ 60 (396) T cd03818 14 RHLAPALAA--------QGH----EVVFLTEPNAAP------PP-----G--GVRVVRYRPPRGPT--------SGTHPY 60 (396) T ss_pred HHHHHHHHH--------CCC----EEEEEecCCCCC------CC-----C--CeeEEEecCCCCCC--------CCCCcc Confidence 567887777 899 999999752111 11 1 68999988764321 022333 Q ss_pred HHHHHHH------HHHHHHH--hcCCCceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCC----Cchhhhhh Q 005625 389 LETFTED------VGSEITA--ELQGFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPD----SDIYWKKF 455 (687) Q Consensus 389 Le~f~~~------~~~~L~~--~~~~~PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~----s~l~w~~~ 455 (687) +..|... +.+.+.. ..+.+|||||+|...+ .+..+++. .++|+|.+.|.+....... ........ T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~--~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396) T cd03818 61 LREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWG--ETLFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLD 138 (396) T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccc--hhhhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchh Confidence 3223211 1111111 1356899999996543 23344444 4589988765432211100 00000000 Q ss_pred cccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCC Q 005625 456 DEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 535 (687) Q Consensus 456 ~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p 535 (687) ...+.-.+......+++.||.||++|..... .+.. . +..|+.|||||||.+.|.| T Consensus 139 -~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~-------~~~~--------~---------~~~ki~vI~ngvd~~~f~~ 193 (396) T cd03818 139 -DALRLRNRNALILLALAQADAGVSPTRWQRS-------TFPA--------E---------LRSRISVIHDGIDTDRLRP 193 (396) T ss_pred -HHHHHHHhhhHhHHHHHhCCEEECCCHHHHh-------hCcH--------h---------hccceEEeCCCccccccCC Confidence 0000000001134679999999999876543 1211 1 1358999999999999887 Q ss_pred CChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEec-CCcCCCHHHHHHHHhhccccCCCceEEEEEccCC Q 005625 536 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMAR-LDHVKNMTGLVECYGKNSQLRELVNLVVVAGYID 614 (687) Q Consensus 536 ~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGR-Ldp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d 614 (687) ......+ ... .....+++++|+++|| +.+.||++.|++|++.+....++++|+|+|++.. T Consensus 194 ~~~~~~~-------~~~------------~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~ 254 (396) T cd03818 194 DPQARLR-------LPN------------GRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGV 254 (396) T ss_pred Cchhhhc-------ccc------------cccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCc Confidence 5432211 000 1112456789999998 9999999999999998877678899999986421 Q ss_pred C--CCCCChHHHHHHHHHHHHHHHcCC---CCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 615 V--NKSKDREEIAEIEKMHELMKTYKL---DGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 615 ~--~~s~d~ee~~el~~L~~li~elgL---~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) . ....+++. ..+ +++++++. .++|+|+|+ ++++++.++|+.+ |+||+||.. +||++++||.+ T Consensus 255 ~~g~~~~~~~~--~~~---~~~~~~~~~~~~~~V~f~G~-v~~~~~~~~l~~a----dv~v~~s~~e~~~~~llEAmA 322 (396) T cd03818 255 SYGAPPPDGES--WKQ---HMLDELGGRLDLSRVHFLGR-VPYDQYLALLQVS----DVHVYLTYPFVLSWSLLEAMA 322 (396) T ss_pred ccCCCCCCccc--HHH---HHHHHhhcccCcceEEEeCC-CCHHHHHHHHHhC----cEEEEcCcccccchHHHHHHH Confidence 0 00111110 111 22333332 578999995 8999999999864 999999999 99999999975 No 34 >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Probab=99.89 E-value=1.1e-21 Score=221.10 Aligned_cols=310 Identities=13% Similarity=0.113 Sum_probs=192.1 Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccc--cCCCCeEEEEecCCCC- Q 005625 296 LGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV--SGTEHTHILRVPFRSE- 372 (687) Q Consensus 296 lG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i--~~~~~v~IlRvP~~~~- 372 (687) .|.-..||.++.+..+|-++++..++.=+-.|+.+...|.+++|.+....|..+-- +.+ .+.+...+-+++-..+ T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 245 (578) T PRK15490 168 TGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFL--KEVLEEQVEVLEIAKITGNLFD 245 (578) T ss_pred ecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhH--HHHHhcCCceEEeeccchhhhh Confidence 34556799999999888888877666655567777889999999875544432221 111 1112333333332111 Q ss_pred -----ccccccccccccchhhHHHHHH-HHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEE-EecCCccccC Q 005625 373 -----KGILRQWISRFDVWPYLETFTE-DVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT-IAHALEKTKY 445 (687) Q Consensus 373 -----~~~~~~~isr~~iwp~Le~f~~-~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~-T~HaL~~~ky 445 (687) .|.++.+++- +-|.. -+.. .+...+ + ..+|||||+|...+++.|.++|+..|+|+++ +.|++.... T Consensus 246 ~~~~~~~~~~~~~~~--~~~~~-~~~~~~l~~~i-r--~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~~- 318 (578) T PRK15490 246 DATIESPELRLLLSH--LPPVC-KYGIKHLVPHL-C--ERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPVV- 318 (578) T ss_pred hccccchHHHHHHhc--CChHH-HHHHHHHHHHH-H--HcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCcc- Confidence 1112222220 01110 0111 222233 3 4799999999988889999999999999964 577621110 Q ss_pred CCCchhhhhhcccccccchhHHHHHHHhcCCEEE------ecCHHHHhccccccccccccccccccccceeecccccCCC Q 005625 446 PDSDIYWKKFDEKYHFSCQFTADLIAMNNADFII------TSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (687) Q Consensus 446 ~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~II------tsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~p 519 (687) .... +..|...+..|+.++ +.|..... .+..+ + ++... T Consensus 319 -~~r~--------------~~~e~~~~~~a~~i~~~sd~v~~s~~v~~-------~l~~~--------l------gip~~ 362 (578) T PRK15490 319 -RKRL--------------FKPEYEPLYQALAVVPGVDFMSNNHCVTR-------HYADW--------L------KLEAK 362 (578) T ss_pred -hhhH--------------HHHHHHHhhhhceeEecchhhhccHHHHH-------HHHHH--------h------CCCHH Confidence 0010 011222334444433 33321111 12111 1 12223 Q ss_pred cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 520 KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 520 K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) |+.|||||||.+.|.|....... .+.... .+ .+++.++|+++||+.+.||...++++++++.+ T Consensus 363 KI~VIyNGVD~~rf~p~~~~~~~---~r~~~~------------~~--l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk 425 (578) T PRK15490 363 HFQVVYNGVLPPSTEPSSEVPHK---IWQQFT------------QK--TQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ 425 (578) T ss_pred HEEEEeCCcchhhcCccchhhHH---HHHHhh------------hc--cCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh Confidence 99999999999988875422110 011110 01 13456799999999999999999999988766 Q ss_pred cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCc Q 005625 600 LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIP 678 (687) Q Consensus 600 l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFG 678 (687) ..++.+|+|+|++. + .++++++++++|+.++|+|+|+ +++++++|+.+ |+||+||.+ ||| T Consensus 426 ~~pdirLvIVGdG~---------~---~eeLk~la~elgL~d~V~FlG~---~~Dv~~~LaaA----DVfVlPS~~EGfp 486 (578) T PRK15490 426 HHPATRFVLVGDGD---------L---RAEAQKRAEQLGILERILFVGA---SRDVGYWLQKM----NVFILFSRYEGLP 486 (578) T ss_pred HCCCeEEEEEeCch---------h---HHHHHHHHHHcCCCCcEEECCC---hhhHHHHHHhC----CEEEEcccccCcc Confidence 56778999988542 2 2466788999999999999996 46899999864 999999999 999 Q ss_pred hhhhcccC Q 005625 679 LNFLPSYK 686 (687) Q Consensus 679 LviLEa~~ 686 (687) ++++||.+ T Consensus 487 ~vlLEAMA 494 (578) T PRK15490 487 NVLIEAQM 494 (578) T ss_pred HHHHHHHH Confidence 99999975 No 35 >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. Probab=99.88 E-value=5.3e-21 Score=198.18 Aligned_cols=297 Identities=19% Similarity=0.221 Sum_probs=194.3 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++|..- .|+.||...++..++++|.+ +|| +|.++|...++... .... T Consensus 1 kil~~~~~~---------~p~~~G~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~~------~~~~--- 50 (374) T cd03817 1 KIGIFTDTY---------LPQVNGVATSIRRLAEELEK--------RGH----EVYVVAPSYPGAPE------EEEV--- 50 (374) T ss_pred CeeEeehhc---------cCCCCCeehHHHHHHHHHHH--------cCC----eEEEEeCCCCCCCc------cccc--- Confidence 688887541 48899999999999988887 799 99999865433210 0000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~H 438 (687) .++...+++.... ..+ ...|. +...+ ..+.+ ..+||+||+|+. ..+..+..++++.++|+|.+.| T Consensus 51 ~~~~~~~~~~~~~----~~~---~~~~~----~~~~~-~~~~~--~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 116 (374) T cd03817 51 VVVRPFRVPTFKY----PDF---RLPLP----IPRAL-IIILK--ELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYH 116 (374) T ss_pred ccccccccccchh----hhh---hcccc----HHHHH-HHHHh--hcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEec Confidence 1122222111110 000 01111 11112 22223 478999999975 4566778888999999999999 Q ss_pred CCccccCCCCchhhhhhcccccccchh-HHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQF-TADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 517 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf-~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~ 517 (687) ..... +.... .... ........ ..+...++.||.|+++|..... .+..+ + . T Consensus 117 ~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~-------~~~~~---------------~-~ 168 (374) T cd03817 117 TMYED-YTHYV-PLGR---LLARAVVRRKLSRRFYNRCDAVIAPSEKIAD-------LLREY---------------G-V 168 (374) T ss_pred CCHHH-HHHHH-hccc---chhHHHHHHHHHHHHhhhCCEEEeccHHHHH-------HHHhc---------------C-C Confidence 86431 11000 0000 00000001 2456788999999998865432 12111 1 1 Q ss_pred CCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhc Q 005625 518 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKN 597 (687) Q Consensus 518 ~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l 597 (687) ..++.++|||+|.+.|.+......+ .. +..+.+++.|+++||+.+.||++.+++|+.++ T Consensus 169 ~~~~~vi~~~~~~~~~~~~~~~~~~-----~~----------------~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~ 227 (374) T cd03817 169 KRPIEVIPTGIDLDRFEPVDGDDER-----RK----------------LGIPEDEPVLLYVGRLAKEKNIDFLIRAFARL 227 (374) T ss_pred CCceEEcCCccchhccCccchhHHH-----Hh----------------cCCCCCCeEEEEEeeeecccCHHHHHHHHHHH Confidence 2479999999999888765432221 11 12245678899999999999999999999987 Q ss_pred cccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 598 SQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 598 ~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) ....++.+++++|++.. .+.++++++++++.++|.|+|+ ++.+++.++|+.+ |++++||.+ + T Consensus 228 ~~~~~~~~l~i~G~~~~------------~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~a----d~~l~~s~~e~ 290 (374) T cd03817 228 LKEEPDVKLVIVGDGPE------------REELEELARELGLADRVIFTGF-VPREELPDYYKAA----DLFVFASTTET 290 (374) T ss_pred HHhCCCeEEEEEeCCch------------HHHHHHHHHHcCCCCcEEEecc-CChHHHHHHHHHc----CEEEecccccC Confidence 76556789998886521 2356678889999999999995 8899999999964 999999999 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 291 ~~~~~~Ea~~ 300 (374) T cd03817 291 QGLVLLEAMA 300 (374) T ss_pred cChHHHHHHH Confidence 9999999975 No 36 >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. Probab=99.88 E-value=1.1e-20 Score=196.73 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=170.7 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) |||+++++..+ ..+.|..||.++++.+++++|.+ +|| +|.++|...+... ... T Consensus 1 MkI~~i~~~~~-----~~~~~~~GG~~~~~~~l~~~L~~--------~g~----~V~v~~~~~~~~~-----~~~----- 53 (335) T cd03802 1 MRIALVAPPRE-----PVPPPAYGGTERVVAALTEGLVA--------RGH----EVTLFASGDSKTA-----APL----- 53 (335) T ss_pred CeEEEEcCCcc-----cCCCcccCcHHHHHHHHHHHHHh--------cCc----eEEEEecCCCCcc-----cce----- Confidence 69999996421 12346789999999999999988 899 9999986422110 000 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEec Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~H 438 (687) ......+.... + .........+...+.+ +.+ ..+||+||+|.+...+. +++..++|.|+|.| T Consensus 54 ---~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~-~~~--~~~~Divh~~~~~~~~~---~~~~~~~~~v~~~h 115 (335) T cd03802 54 ---VPVVPEPLRLD------A---PGRDRAEAEALALAER-ALA--AGDFDIVHNHSLHLPLP---FARPLPVPVVTTLH 115 (335) T ss_pred ---eeccCCCcccc------c---chhhHhhHHHHHHHHH-HHh--cCCCCEEEecCcccchh---hhcccCCCEEEEec Confidence 00000000000 0 0000011111222222 223 46899999998876655 67789999999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) +....... + -......++.++++|..... .+. . . T Consensus 116 ~~~~~~~~-----~---------------~~~~~~~~~~~~~~s~~~~~-------~~~-----------------~--~ 149 (335) T cd03802 116 GPPDPELL-----K---------------LYYAARPDVPFVSISDAQRR-------PWP-----------------P--L 149 (335) T ss_pred CCCCcccc-----h---------------HHHhhCcCCeEEEecHHHHh-------hcc-----------------c--c Confidence 86432110 0 01345667888888765432 110 0 1 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .++.+||||+|.+.|.+.. .+++.|+++||+.+.||++.|++++.+ T Consensus 150 ~~~~vi~ngvd~~~~~~~~--------------------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~-- 195 (335) T cd03802 150 PWVATVHNGIDLDDYPFRG--------------------------------PKGDYLLFLGRISPEKGPHLAIRAARR-- 195 (335) T ss_pred cccEEecCCcChhhCCCCC--------------------------------CCCCEEEEEEeeccccCHHHHHHHHHh-- Confidence 4899999999988775411 234689999999999999999999864 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcC-CCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-- Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK-LDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-- 675 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elg-L~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-- 675 (687) .+.+++++|++.+ .+ .+...+.+.. +.++|.|+|+ ++.+++..+|+.+ |+||+||.+ T Consensus 196 ---~~~~l~i~G~~~~------~~------~~~~~~~~~~~~~~~v~~~G~-~~~~~~~~~~~~~----d~~v~ps~~~E 255 (335) T cd03802 196 ---AGIPLKLAGPVSD------PD------YFYREIAPELLDGPDIEYLGE-VGGAEKAELLGNA----RALLFPILWEE 255 (335) T ss_pred ---cCCeEEEEeCCCC------HH------HHHHHHHHhcccCCcEEEeCC-CCHHHHHHHHHhC----cEEEeCCcccC Confidence 2578998885522 11 1222333333 6789999995 8888888888854 999999984 Q ss_pred CCchhhhcccC Q 005625 676 PIPLNFLPSYK 686 (687) Q Consensus 676 gFGLviLEa~~ 686 (687) +||++++||.+ T Consensus 256 ~~~~~~lEAma 266 (335) T cd03802 256 PFGLVMIEAMA 266 (335) T ss_pred CcchHHHHHHh Confidence 99999999975 No 37 >PLN02846 digalactosyldiacylglycerol synthase Probab=99.88 E-value=3.8e-21 Score=214.59 Aligned_cols=299 Identities=13% Similarity=0.088 Sum_probs=183.1 Q ss_pred cceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCC-CCCCCeEEEEeccCCCCCC-------Ccc Q 005625 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQG-LDISPKILIVTRLIPDAKG-------TTC 349 (687) Q Consensus 278 ~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~G-h~~~~~V~VlTr~ip~~~g-------~~~ 349 (687) .|||+|+|--. .|.++|.++.++-++..|++ +| | +|.|+....+.... .++ T Consensus 4 ~mrIaivTdt~---------lP~vnGva~s~~~~a~~L~~--------~G~h----eV~vvaP~~~~~~~~~~~~~~~~f 62 (462) T PLN02846 4 KQHIAIFTTAS---------LPWMTGTAVNPLFRAAYLAK--------DGDR----EVTLVIPWLSLKDQKLVYPNKITF 62 (462) T ss_pred CCEEEEEEcCC---------CCCCCCeeccHHHHHHHHHh--------cCCc----EEEEEecCCccccccccccccccc Confidence 47999999542 69999999999988888877 89 8 99999876543210 000 Q ss_pred cccc--c-cccCCCCeEEEEecCCCCccccccccc--cccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCC-ChhHH-- Q 005625 350 NQRL--E-RVSGTEHTHILRVPFRSEKGILRQWIS--RFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS-DGNLV-- 421 (687) Q Consensus 350 ~q~l--E-~i~~~~~v~IlRvP~~~~~~~~~~~is--r~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys-~aglv-- 421 (687) +.+. | .+..-.+-+|.|+|..+.. +.+...+ +..+||. .++.+.|.+ .+|||||.|.. ..|+. T Consensus 63 ~~~~~~e~~~~~~~~~~v~r~~s~~~p-~yp~r~~~~~r~~~~~-----~~i~~~l~~---~~pDVIHv~tP~~LG~~~~ 133 (462) T PLN02846 63 SSPSEQEAYVRQWLEERISFLPKFSIK-FYPGKFSTDKRSILPV-----GDISETIPD---EEADIAVLEEPEHLTWYHH 133 (462) T ss_pred cCchhhhhhhhhhccCeEEEecccccc-cCcccccccccccCCh-----HHHHHHHHh---cCCCEEEEcCchhhhhHHH Confidence 0110 0 0111113466677765442 1111100 1112221 244444433 78999999975 45665 Q ss_pred HHHHHHcCCCcEEEEecCCccccCCC-CchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccc Q 005625 422 ASLLAYKMGITQCTIAHALEKTKYPD-SDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHT 500 (687) Q Consensus 422 A~llAr~lgVP~V~T~HaL~~~ky~~-s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~ 500 (687) |..+++++++ +|.|+|+-. ..|.. ....+.. .+..++......-.++|.+|+.|... . .+. T Consensus 134 g~~~~~k~~~-vV~tyHT~y-~~Y~~~~~~g~~~-----~~l~~~~~~~~~r~~~d~vi~pS~~~-~-------~l~--- 195 (462) T PLN02846 134 GKRWKTKFRL-VIGIVHTNY-LEYVKREKNGRVK-----AFLLKYINSWVVDIYCHKVIRLSAAT-Q-------DYP--- 195 (462) T ss_pred HHHHHhcCCc-EEEEECCCh-HHHHHHhccchHH-----HHHHHHHHHHHHHHhcCEEEccCHHH-H-------HHh--- Confidence 7777888866 888999832 11210 0000000 00011111111124589999998532 2 110 Q ss_pred cccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCC--CCEEEEE Q 005625 501 AFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRS--KPIVFSM 578 (687) Q Consensus 501 ~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~--kPiIl~V 578 (687) ..+.+.++|||.+.|.|...... +. +. ..+ .++++++ T Consensus 196 ------------------~~~i~~v~GVd~~~f~~~~~~~~----------~~------------~~-~~~~~~~~~l~v 234 (462) T PLN02846 196 ------------------RSIICNVHGVNPKFLEIGKLKLE----------QQ------------KN-GEQAFTKGAYYI 234 (462) T ss_pred ------------------hCEEecCceechhhcCCCcccHh----------hh------------cC-CCCCcceEEEEE Confidence 12233358999998776543211 00 11 112 3579999 Q ss_pred ecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHH Q 005625 579 ARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGEL 658 (687) Q Consensus 579 GRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~el 658 (687) |||.+.||++.|++|++++....++.+|+|+|+|++ + ++++++++++++..+| |+|+ .+ ..++ T Consensus 235 GRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~---------~---~~L~~~a~~l~l~~~v-f~G~-~~---~~~~ 297 (462) T PLN02846 235 GKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGED---------S---DEVKAAAEKLELDVRV-YPGR-DH---ADPL 297 (462) T ss_pred ecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc---------H---HHHHHHHHhcCCcEEE-ECCC-CC---HHHH Confidence 999999999999999998766556788999986633 2 3567889999998666 8894 43 3368 Q ss_pred HHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 659 YRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 659 Yr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |+.+ |+||+||.+ +||++++||.+ T Consensus 298 ~~~~----DvFv~pS~~Et~g~v~lEAmA 322 (462) T PLN02846 298 FHDY----KVFLNPSTTDVVCTTTAEALA 322 (462) T ss_pred HHhC----CEEEECCCcccchHHHHHHHH Confidence 8754 999999999 99999999975 No 38 >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Probab=99.88 E-value=2.5e-21 Score=208.06 Aligned_cols=273 Identities=12% Similarity=0.154 Sum_probs=171.3 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) |||+++++. .|..||+.+++.+++++|.+ +|+.+ +|.++++..+.. ...+..+ T Consensus 1 mkI~~~~~~----------~~~~GG~e~~~~~l~~~L~~--------~~~g~--~v~v~~~~~~~~-----~~~~~~~-- 53 (359) T PRK09922 1 MKIAFIGEA----------VSGFGGMETVISNVINTFEE--------SKINC--EMFFFCRNDKMD-----KAWLKEI-- 53 (359) T ss_pred CeeEEeccc----------ccCCCchhHHHHHHHHHhhh--------cCcce--eEEEEecCCCCC-----hHHHHhc-- Confidence 699999864 35679999999999999988 73322 888888642211 0111111 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCc--EEEE Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT--QCTI 436 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP--~V~T 436 (687) +. +..++.... .+... + .....+.+.+ + +.+||+||+|...+...+.++++..++| ++.+ T Consensus 54 --~~-~~~~~~~~~-----~~~~~----~---~~~~~l~~~l-~--~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (359) T PRK09922 54 --KY-AQSFSNIKL-----SFLRR----A---KHVYNFSKWL-K--ETQPDIVICIDVISCLYANKARKKSGKQFKIFSW 115 (359) T ss_pred --ch-hcccccchh-----hhhcc----c---HHHHHHHHHH-H--hcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEE Confidence 00 001111100 00000 0 0111233334 3 3789999999876777777877777765 4555 Q ss_pred ecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeeccccc Q 005625 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (687) Q Consensus 437 ~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v 516 (687) .|...... . .+. ...+..||.++++|..... .+..+ ++ T Consensus 116 ~h~~~~~~----~--------~~~--------~~~~~~~d~~i~~S~~~~~-------~~~~~---------------~~ 153 (359) T PRK09922 116 PHFSLDHK----K--------HAE--------CKKITCADYHLAISSGIKE-------QMMAR---------------GI 153 (359) T ss_pred ecCccccc----c--------hhh--------hhhhhcCCEEEEcCHHHHH-------HHHHc---------------CC Confidence 66432110 0 000 1123689999998865432 11110 11 Q ss_pred CCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCC--cCCCHHHHHHHH Q 005625 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD--HVKNMTGLVECY 594 (687) Q Consensus 517 ~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLd--p~Kni~~LVeAf 594 (687) ...|+.+||||+|.+.|..... ...+++.|+++||+. +.||+..|++|+ T Consensus 154 ~~~ki~vi~N~id~~~~~~~~~-----------------------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~ 204 (359) T PRK09922 154 SAQRISVIYNPVEIKTIIIPPP-----------------------------ERDKPAVFLYVGRLKFEGQKNVKELFDGL 204 (359) T ss_pred CHHHEEEEcCCCCHHHccCCCc-----------------------------ccCCCcEEEEEEEEecccCcCHHHHHHHH Confidence 2348999999999654432110 012467899999996 469999999999 Q ss_pred hhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCccc-CcccHHHHHHHhhcCCcEEEEcC Q 005625 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT-NRARNGELYRYIADTKGAFVQVY 673 (687) Q Consensus 595 a~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l-~~~dl~elYr~aad~~dVFVlPS 673 (687) .++. ++.+++++|++.+ .++++++++++++.++|.|+|+.- +.+.+.++|.. +|+||+|| T Consensus 205 ~~~~---~~~~l~ivG~g~~------------~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~----~d~~v~~s 265 (359) T PRK09922 205 SQTT---GEWQLHIIGDGSD------------FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN----VSALLLTS 265 (359) T ss_pred HhhC---CCeEEEEEeCCcc------------HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc----CcEEEECC Confidence 8763 3688999886532 235678899999999999999631 23566777764 39999999 Q ss_pred CC-CCchhhhcccC Q 005625 674 VH-PIPLNFLPSYK 686 (687) Q Consensus 674 l~-gFGLviLEa~~ 686 (687) .+ |||++++||.+ T Consensus 266 ~~Egf~~~~lEAma 279 (359) T PRK09922 266 KFEGFPMTLLEAMS 279 (359) T ss_pred cccCcChHHHHHHH Confidence 99 99999999975 No 39 >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=99.88 E-value=2.2e-20 Score=195.63 Aligned_cols=284 Identities=17% Similarity=0.161 Sum_probs=184.9 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++++.- .|+.||...++.+++++|.+ +|| +|.|+|...... ...+. . T Consensus 1 kil~i~~~~---------~p~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~------~~~~~---~ 50 (357) T cd03795 1 RVLHVGKFY---------PPDRGGIEQVIRDLAEGLAA--------RGI----EVAVLCASPEPK------GRDEE---R 50 (357) T ss_pred CeeEecCCC---------CCCCCcHHHHHHHHHHHHHh--------CCC----ceEEEecCCCCc------chhhh---c Confidence 688888542 47799999999999999888 899 889987642221 11111 1 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecC Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHA 439 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~Ha 439 (687) .+..+.+++..... .+ ++... .....+ +....+||+||+|+..............++|.+.+.|+ T Consensus 51 ~~~~~~~~~~~~~~----~~------~~~~~----~~~~~~-~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 115 (357) T cd03795 51 NGHRVIRAPSLLNV----AS------TPFSP----SFFKQL-KKLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHS 115 (357) T ss_pred cCceEEEeeccccc----cc------ccccH----HHHHHH-HhcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcC Confidence 24566666543220 00 11100 111111 11257899999998643322222233368999999996 Q ss_pred CccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCC Q 005625 440 LEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (687) Q Consensus 440 L~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~p 519 (687) ..... ...+. .++ ..+...++.||.||++|...... ... + ..... T Consensus 116 ~~~~~----~~~~~----~~~-----~~~~~~~~~~d~vi~~s~~~~~~-------~~~--------~-------~~~~~ 160 (357) T cd03795 116 DIVKQ----KLLLK----LYR-----PLQRRFLRRADAIVATSPNYAET-------SPV--------L-------RRFRD 160 (357) T ss_pred hhhcc----chhhh----hhh-----HHHHHHHHhcCEEEeCcHHHHHH-------HHH--------h-------cCCcc Confidence 42211 00000 111 13456789999999988654321 100 0 11124 Q ss_pred cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 520 KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 520 K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) ++.+||||+|.+.|.+...... .. .....++++|+++||+.+.||++.+++|+.++. T Consensus 161 ~~~~i~~gi~~~~~~~~~~~~~---------~~-------------~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~- 217 (357) T cd03795 161 KVRVIPLGLDPARYPRPDALEE---------AI-------------WRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP- 217 (357) T ss_pred ceEEecCCCChhhcCCcchhhh---------Hh-------------hcCCCCCcEEEEecccccccCHHHHHHHHHhcc- Confidence 8999999999887765432110 00 012346789999999999999999999998765 Q ss_pred cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCC--C-C Q 005625 600 LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYV--H-P 676 (687) Q Consensus 600 l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl--~-g 676 (687) +..++++|++. . ...+.++++++++.++|.|+|+ ++++++.++|+.| |++++||. . + T Consensus 218 ---~~~l~i~G~g~---------~---~~~~~~~~~~~~~~~~V~~~g~-v~~~~~~~~~~~a----d~~i~ps~~~~e~ 277 (357) T cd03795 218 ---DAPLVIVGEGP---------L---EAELEALAAALGLLDRVRFLGR-LDDEEKAALLAAC----DVFVFPSVERSEA 277 (357) T ss_pred ---CcEEEEEeCCh---------h---HHHHHHHHHhcCCcceEEEcCC-CCHHHHHHHHHhC----CEEEeCCcccccc Confidence 68888887542 1 2355677889999999999995 8888999999854 99999996 4 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 278 ~g~~~~Ea~~ 287 (357) T cd03795 278 FGIVLLEAMA 287 (357) T ss_pred cchHHHHHHH Confidence 9999999975 No 40 >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have Probab=99.87 E-value=2.6e-20 Score=195.27 Aligned_cols=282 Identities=14% Similarity=0.140 Sum_probs=181.1 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||++++.+. ..||.+.++.+++++|.+ +|| +|.|++... +... ..... T Consensus 1 ~il~~~~~~-----------~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~-~~~~----~~~~~---- 48 (360) T cd04951 1 KILYVITGL-----------GLGGAEKQVVDLADQFVA--------KGH----QVAIISLTG-ESEV----KPPID---- 48 (360) T ss_pred CeEEEecCC-----------CCCCHHHHHHHHHHhccc--------CCc----eEEEEEEeC-CCCc----cchhh---- Confidence 577777542 469999999999998877 899 889887531 1110 00000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHc-CCCcEEEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~-lgVP~V~T~H 438 (687) ...+..++.... .+.++..+ ..+.+.+ + +.+||+||+|....++++.+++.. .++|.++|.| T Consensus 49 -~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~-~--~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h 111 (360) T cd04951 49 -ATIILNLNMSKN------------PLSFLLAL-WKLRKIL-R--QFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAH 111 (360) T ss_pred -ccceEEeccccc------------chhhHHHH-HHHHHHH-H--hcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEee Confidence 111123332211 01111111 1222223 3 368999999988877777776654 3678999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) +..... .. ... ....+...++.+++.|..... .+... + .... T Consensus 112 ~~~~~~----~~--------~~~-----~~~~~~~~~~~~~~~s~~~~~-------~~~~~-------------~-~~~~ 153 (360) T cd04951 112 SKNEGG----RL--------RML-----AYRLTDFLSDLTTNVSKEALD-------YFIAS-------------K-AFNA 153 (360) T ss_pred ccCchh----HH--------HHH-----HHHHHhhccCceEEEcHHHHH-------HHHhc-------------c-CCCc Confidence 764211 00 001 112334456777776654432 11110 0 1123 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .|+.+||||+|...|.+......+ .++ .+...+++++++++||+.+.||++.+++|+.++. T Consensus 154 ~~~~~i~ng~~~~~~~~~~~~~~~-------~~~------------~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~ 214 (360) T cd04951 154 NKSFVVYNGIDTDRFRKDPARRLK-------IRN------------ALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLL 214 (360) T ss_pred ccEEEEccccchhhcCcchHHHHH-------HHH------------HcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHH Confidence 489999999998887664432211 111 1123456789999999999999999999999877 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CC Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PI 677 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gF 677 (687) ...++.+++++|++.. . +++.+.++++++.++|.|+|. . +++.++|+.+ |+||+||.+ || T Consensus 215 ~~~~~~~l~i~G~g~~---------~---~~~~~~~~~~~~~~~v~~~g~-~--~~~~~~~~~a----d~~v~~s~~e~~ 275 (360) T cd04951 215 SDYLDIKLLIAGDGPL---------R---ATLERLIKALGLSNRVKLLGL-R--DDIAAYYNAA----DLFVLSSAWEGF 275 (360) T ss_pred hhCCCeEEEEEcCCCc---------H---HHHHHHHHhcCCCCcEEEecc-c--ccHHHHHHhh----ceEEecccccCC Confidence 6556789999886532 1 345677888999999999995 3 5789999864 999999999 99 Q ss_pred chhhhcccC Q 005625 678 PLNFLPSYK 686 (687) Q Consensus 678 GLviLEa~~ 686 (687) |++++||.+ T Consensus 276 ~~~~~Ea~a 284 (360) T cd04951 276 GLVVAEAMA 284 (360) T ss_pred ChHHHHHHH Confidence 999999975 No 41 >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. Probab=99.86 E-value=6.2e-20 Score=190.17 Aligned_cols=313 Identities=17% Similarity=0.184 Sum_probs=196.6 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++|.+. .|+.||...++.+++++|.+ +|| +|.+++..........+ +. ...... T Consensus 1 kIl~i~~~~---------~~~~~G~~~~~~~l~~~L~~--------~g~----~v~~~~~~~~~~~~~~~-~~-~~~~~~ 57 (394) T cd03794 1 KILILSQYF---------PPELGGGAFRTTELAEELVK--------RGH----EVTVITGSPNYPSGKIY-KG-YKREEV 57 (394) T ss_pred CEEEEeccc---------CCccCCcceeHHHHHHHHHh--------CCc----eEEEEecCCCccccccc-cc-ceEEec Confidence 689999663 34558999999999999887 899 99999865322211000 00 000112 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCC--ChhHHHHHHHHcCCCcEEEEe Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS--DGNLVASLLAYKMGITQCTIA 437 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys--~aglvA~llAr~lgVP~V~T~ 437 (687) .++++++++...... ..++.+ ++.+ ..|.......+.. ...+||+||+|++ .....+..+++..++|.+++. T Consensus 58 ~~~~~~~~~~~~~~~--~~~~~~--~~~~-~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (394) T cd03794 58 DGVRVHRVPLPPYKK--NGLLKR--LLNY-LSFALSALLALLK-RRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEV 131 (394) T ss_pred CCeEEEEEecCCCCc--cchHHH--HHhh-hHHHHHHHHHHHh-cccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEe Confidence 478888888765421 011010 1111 1222233333321 2578999999973 345666777788899999999 Q ss_pred cCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccC Q 005625 438 HALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 517 (687) Q Consensus 438 HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~ 517 (687) |++...........+... ..+.+.. ..+...++.+|.|+++|..... .+..+ +.. T Consensus 132 h~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~d~vi~~s~~~~~-------~~~~~---------------~~~ 186 (394) T cd03794 132 RDLWPESAVALGLLKNGS-LLYRLLR--KLERLIYRRADAIVVISPGMRE-------YLVRR---------------GVP 186 (394) T ss_pred hhhcchhHHHccCccccc-hHHHHHH--HHHHHHHhcCCEEEEECHHHHH-------HHHhc---------------CCC Confidence 986432111100000000 0001111 2356788999999999876543 11100 122 Q ss_pred CCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhc Q 005625 518 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKN 597 (687) Q Consensus 518 ~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l 597 (687) ..++.+||||+|...+.+......+ . ......+++.|+++||+.+.||++.+++|+.++ T Consensus 187 ~~~~~~i~~~~~~~~~~~~~~~~~~-----~----------------~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l 245 (394) T cd03794 187 PEKISVIPNGVDLELFKPPPADESL-----R----------------KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALL 245 (394) T ss_pred cCceEEcCCCCCHHHcCCccchhhh-----h----------------hccCCCCcEEEEEecCcccccCHHHHHHHHHHH Confidence 3589999999998777654432111 0 012245678899999999999999999999988 Q ss_pred cccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 598 SQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 598 ~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) ... ++.+++++|++.+ .+.+.+++...++ ++|.|.| .++.+++.++|+.+ |++++||.. + T Consensus 246 ~~~-~~~~l~i~G~~~~------------~~~~~~~~~~~~~-~~v~~~g-~~~~~~~~~~~~~~----di~i~~~~~~~ 306 (394) T cd03794 246 KDR-PDIRFLIVGDGPE------------KEELKELAKALGL-DNVTFLG-RVPKEELPELLAAA----DVGLVPLKPGP 306 (394) T ss_pred hhc-CCeEEEEeCCccc------------HHHHHHHHHHcCC-CcEEEeC-CCChHHHHHHHHhh----CeeEEeccCcc Confidence 765 6788988875421 1234455666666 5699999 58999999999965 999999998 6 Q ss_pred C-----chhhhcccC Q 005625 677 I-----PLNFLPSYK 686 (687) Q Consensus 677 F-----GLviLEa~~ 686 (687) + |.+++||.+ T Consensus 307 ~~~~~~p~~~~Ea~~ 321 (394) T cd03794 307 AFEGVSPSKLFEYMA 321 (394) T ss_pred cccccCchHHHHHHH Confidence 6 666899975 No 42 >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. Probab=99.86 E-value=2.6e-19 Score=182.85 Aligned_cols=296 Identities=19% Similarity=0.182 Sum_probs=192.4 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||++++... .|..||...++..++++|.+ .|| +|.+++....... ...... T Consensus 1 kI~ii~~~~---------~~~~~G~~~~~~~l~~~L~~--------~g~----~v~i~~~~~~~~~------~~~~~~-- 51 (374) T cd03801 1 KILLVTPEY---------PPSVGGAERHVLELARALAA--------RGH----EVTVLTPGDGGLP------DEEEVG-- 51 (374) T ss_pred CeeEEeccc---------CCccCcHhHHHHHHHHHHHh--------cCc----eEEEEecCCCCCC------ceeeec-- Confidence 688898663 23369999999999999887 799 9999987532221 000000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecC Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHA 439 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~Ha 439 (687) ...+...+.... .........+.......+ + ..+||+||+|++.....+..+++..++|++++.|+ T Consensus 52 -~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~--~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374) T cd03801 52 -GIVVVRPPPLLR----------VRRLLLLLLLALRLRRLL-R--RERFDVVHAHDWLALLAAALAARLLGIPLVLTVHG 117 (374) T ss_pred -CcceecCCcccc----------cchhHHHHHHHHHHHHHh-h--hcCCcEEEEechhHHHHHHHHHHhcCCcEEEEecc Confidence 011110000000 000111111222222222 3 36899999999876655557888999999999998 Q ss_pred CccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCC Q 005625 440 LEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (687) Q Consensus 440 L~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~p 519 (687) .......... . . ... .....+...++.+|.+++.|..... .+.. .+ ..... T Consensus 118 ~~~~~~~~~~-~---~--~~~--~~~~~~~~~~~~~d~~i~~s~~~~~-------~~~~--------~~------~~~~~ 168 (374) T cd03801 118 LEFGRPGNEL-G---L--LLK--LARALERRALRRADRIIAVSEATRE-------ELRE--------LG------GVPPE 168 (374) T ss_pred chhhccccch-h---H--HHH--HHHHHHHHHHHhCCEEEEecHHHHH-------HHHh--------cC------CCCCC Confidence 7543221100 0 0 000 1112356788999999998865443 1211 11 11113 Q ss_pred cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 520 KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 520 K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) ++.+||||+|...|.+.. ...+ . ......+++.|+++||+.+.||++.+++|+..+.. T Consensus 169 ~~~~i~~~~~~~~~~~~~-~~~~-----~----------------~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~ 226 (374) T cd03801 169 KITVIPNGVDTERFRPAP-RAAR-----R----------------RLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRK 226 (374) T ss_pred cEEEecCcccccccCccc-hHHH-----h----------------hcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhh Confidence 899999999988876543 1111 1 01123466899999999999999999999998876 Q ss_pred cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCc Q 005625 600 LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIP 678 (687) Q Consensus 600 l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFG 678 (687) ..++..++++|++. ....+.++++++++.++|.|+|+ ++.+++.++|+.+ |++++||.+ +|| T Consensus 227 ~~~~~~l~i~G~~~------------~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~----di~i~~~~~~~~~ 289 (374) T cd03801 227 EYPDVRLVIVGDGP------------LREELEALAAELGLGDRVTFLGF-VPDEDLPALYAAA----DVFVLPSLYEGFG 289 (374) T ss_pred hcCCeEEEEEeCcH------------HHHHHHHHHHHhCCCcceEEEec-cChhhHHHHHHhc----CEEEecchhcccc Confidence 55678888887431 22455677888999999999995 8889999999864 999999999 999 Q ss_pred hhhhcccC Q 005625 679 LNFLPSYK 686 (687) Q Consensus 679 LviLEa~~ 686 (687) ++++||.+ T Consensus 290 ~~~~Ea~~ 297 (374) T cd03801 290 LVLLEAMA 297 (374) T ss_pred chHHHHHH Confidence 99999975 No 43 >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. Probab=99.85 E-value=3.1e-19 Score=186.10 Aligned_cols=282 Identities=16% Similarity=0.111 Sum_probs=179.1 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++|+. .|..||..+++.+++++|.+ .|| +|.+++...+... ....... T Consensus 1 kI~~v~~~----------~~~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~-------~~~~~~~ 51 (366) T cd03822 1 RIALVSPY----------PPRKCGIATFTTDLVNALSA--------RGP----DVLVVSVAALYPS-------LLYGGEQ 51 (366) T ss_pred CeEEecCC----------CCCCCcHHHHHHHHHHHhhh--------cCC----eEEEEEeecccCc-------ccCCCcc Confidence 68999875 36689999999999999988 799 8888875422210 0000000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCC---hhHHHHHH---HHcCCCcE Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSD---GNLVASLL---AYKMGITQ 433 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~---aglvA~ll---Ar~lgVP~ 433 (687) ..... .. ....+.+ ..+.+.+ + ..+||+||+|.+. +...+..+ ++..++|+ T Consensus 52 ~~~~~--~~-------------~~~~~~~-----~~~~~~~-~--~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (366) T cd03822 52 EVVRV--IV-------------LDNPLDY-----RRAARAI-R--LSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPV 108 (366) T ss_pred cceee--ee-------------cCCchhH-----HHHHHHH-h--hcCCCEEEEeeccccccchhhHHHHHHHhhcCCCE Confidence 00000 00 0011111 1122223 3 3689999998742 22223322 34589999 Q ss_pred EEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecc Q 005625 434 CTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHG 513 (687) Q Consensus 434 V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~g 513 (687) |++.|+.... . ...+ + ...++..++.+|.|+++|..... ++.. T Consensus 109 i~~~h~~~~~-~---~~~~------~-----~~~~~~~~~~~d~ii~~s~~~~~-------~~~~--------------- 151 (366) T cd03822 109 VVTLHTVLLH-E---PRPG------D-----RALLRLLLRRADAVIVMSSELLR-------ALLL--------------- 151 (366) T ss_pred EEEEecCCcc-c---cchh------h-----hHHHHHHHhcCCEEEEeeHHHHH-------HHHh--------------- Confidence 9999986110 0 0000 0 01235678899999999733322 1210 Q ss_pred cccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHH Q 005625 514 IDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVEC 593 (687) Q Consensus 514 i~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeA 593 (687) .....++.+||||+|...+.+.... . . .....++++|+++||+.+.||++.|++| T Consensus 152 -~~~~~~~~~i~~~~~~~~~~~~~~~-~----------~-------------~~~~~~~~~i~~~G~~~~~K~~~~ll~a 206 (366) T cd03822 152 -RAYPEKIAVIPHGVPDPPAEPPESL-K----------A-------------LGGLDGRPVLLTFGLLRPYKGLELLLEA 206 (366) T ss_pred -hcCCCcEEEeCCCCcCcccCCchhh-H----------h-------------hcCCCCCeEEEEEeeccCCCCHHHHHHH Confidence 0112499999999998766543221 0 0 0123467899999999999999999999 Q ss_pred HhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcC Q 005625 594 YGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVY 673 (687) Q Consensus 594 fa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPS 673 (687) +.++....++..++++|++.. .... ......++++++++.++|.|.|..++.+++.++|+.+ |++|+|| T Consensus 207 ~~~~~~~~~~~~l~i~G~~~~------~~~~-~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~a----d~~v~ps 275 (366) T cd03822 207 LPLLVAKHPDVRLLVAGETHP------DLER-YRGEAYALAERLGLADRVIFINRYLPDEELPELFSAA----DVVVLPY 275 (366) T ss_pred HHHHHhhCCCeEEEEeccCcc------chhh-hhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhc----CEEEecc Confidence 998876666788998885432 1110 0011114588899999999998448889999999964 9999999 Q ss_pred CC---CCchhhhcccC Q 005625 674 VH---PIPLNFLPSYK 686 (687) Q Consensus 674 l~---gFGLviLEa~~ 686 (687) .+ +||++++||.+ T Consensus 276 ~~e~~~~~~~~~Ea~a 291 (366) T cd03822 276 RSADQTQSGVLAYAIG 291 (366) T ss_pred cccccccchHHHHHHH Confidence 97 89999999864 No 44 >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. Probab=99.85 E-value=1e-19 Score=200.59 Aligned_cols=319 Identities=13% Similarity=0.042 Sum_probs=189.4 Q ss_pred CccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccccc Q 005625 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (687) Q Consensus 276 p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~ 355 (687) |..-||+|+|. ++ +|....+.+++++|.+ +|| +|.|+|...++. .+. T Consensus 1 ~~~~~~~~~~~------------~~-~~~~~R~~~~a~~L~~--------~G~----~V~ii~~~~~~~--------~~~ 47 (415) T cd03816 1 PKRKRVCVLVL------------GD-IGRSPRMQYHALSLAK--------HGW----KVDLVGYLETPP--------HDE 47 (415) T ss_pred CCccEEEEEEe------------cc-cCCCHHHHHHHHHHHh--------cCc----eEEEEEecCCCC--------CHH Confidence 34457888874 22 4445677888988887 899 999998643221 111 Q ss_pred ccCCCCeEEEEecCCC-CccccccccccccchhhHHHH---HHHHHHHHHHhcCCCceEEEeCCCC---hhHHHHHHHHc Q 005625 356 VSGTEHTHILRVPFRS-EKGILRQWISRFDVWPYLETF---TEDVGSEITAELQGFPDFIIGNYSD---GNLVASLLAYK 428 (687) Q Consensus 356 i~~~~~v~IlRvP~~~-~~~~~~~~isr~~iwp~Le~f---~~~~~~~L~~~~~~~PDLIH~Hys~---aglvA~llAr~ 428 (687) .....++.+++++..+ ..+..+ .+..+.... +..+...+++ ..+||+||+|... ...+|.++++. T Consensus 48 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~--~~~~Dvi~~~~~~~~~~~~~a~~~~~~ 119 (415) T cd03816 48 ILSNPNITIHPLPPPPQRLNKLP------FLLFAPLKVLWQFFSLLWLLYK--LRPADYILIQNPPSIPTLLIAWLYCLL 119 (415) T ss_pred HhcCCCEEEEECCCCccccccch------HHHHHHHHHHHHHHHHHHHHHh--cCCCCEEEEeCCCCchHHHHHHHHHHH Confidence 1112478888887764 111110 011111111 1122222333 3589999998643 34567777888 Q ss_pred CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccc Q 005625 429 MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLY 508 (687) Q Consensus 429 lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Ly 508 (687) .++|+|+|.|+....... .+. + .......+.. ..|....+.||.|||+|...... +.++ T Consensus 120 ~~~~~V~~~h~~~~~~~~-~~~-~-~~~~~~~~~~--~~e~~~~~~ad~ii~vS~~~~~~----l~~~------------ 178 (415) T cd03816 120 RRTKLIIDWHNYGYTILA-LKL-G-ENHPLVRLAK--WYEKLFGRLADYNLCVTKAMKED----LQQF------------ 178 (415) T ss_pred hCCeEEEEcCCchHHHHh-ccc-C-CCCHHHHHHH--HHHHHHhhcCCEeeecCHHHHHH----HHhh------------ Confidence 999999999986321110 000 0 0000011111 23677889999999998754321 1111 Q ss_pred eeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhh--hcCCCc-ccccccCCCCCCCCEEEEEecCCcCC Q 005625 509 RVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQL--LFDPEQ-NDEHVGTLSDRSKPIVFSMARLDHVK 585 (687) Q Consensus 509 rvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~l--l~~~~~-~~~~~g~l~~~~kPiIl~VGRLdp~K 585 (687) +....|+.|||||. ...|.|......+ ....++ -++..+ .....+ ...++..+++++||+.+.| T Consensus 179 ------~~~~~ki~vI~Ng~-~~~f~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~grl~~~K 245 (415) T cd03816 179 ------NNWKIRATVLYDRP-PEQFRPLPLEEKH-----ELFLKLAKTFLTRELRIGAVQ-LSEERPALLVSSTSWTPDE 245 (415) T ss_pred ------hccCCCeeecCCCC-HHHceeCcHHHHH-----HHHHhccccccccccccccce-ecCCCceEEEEeccccCCC Confidence 12234999999995 4677776543221 000000 000000 000001 1123445788999999999 Q ss_pred CHHHHHHHHhhcccc------CCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHH Q 005625 586 NMTGLVECYGKNSQL------RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELY 659 (687) Q Consensus 586 ni~~LVeAfa~l~~l------~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elY 659 (687) |++.|++|+..+... .++..|+|+|++.. .++++++++++++++.+.+.|+ +++++++++| T Consensus 246 ~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~------------~~~l~~~~~~~~l~~~~~~~g~-~~~~~~~~~l 312 (415) T cd03816 246 DFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL------------KEKYLERIKELKLKKVTIRTPW-LSAEDYPKLL 312 (415) T ss_pred CHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc------------HHHHHHHHHHcCCCcEEEEcCc-CCHHHHHHHH Confidence 999999999987532 24578888886521 2466788999999876777785 7899999999 Q ss_pred HHhhcCCcEEEEcCC---C-CCchhhhcccC Q 005625 660 RYIADTKGAFVQVYV---H-PIPLNFLPSYK 686 (687) Q Consensus 660 r~aad~~dVFVlPSl---~-gFGLviLEa~~ 686 (687) +.+ |+||+|+. . +||++++||.+ T Consensus 313 ~~a----Dv~v~~~~~~~~~~~p~~~~Eama 339 (415) T cd03816 313 ASA----DLGVSLHTSSSGLDLPMKVVDMFG 339 (415) T ss_pred HhC----CEEEEccccccccCCcHHHHHHHH Confidence 964 99997532 3 79999999975 No 45 >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. Probab=99.85 E-value=2.9e-19 Score=182.36 Aligned_cols=283 Identities=14% Similarity=0.124 Sum_probs=183.5 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||++++... ..||...++.+++++|.+ +|| +|.+++........ ....... T Consensus 1 kIl~~~~~~-----------~~gG~~~~~~~l~~~l~~--------~g~----~v~v~~~~~~~~~~----~~~~~~~-- 51 (353) T cd03811 1 KILFVIPSL-----------GGGGAERVLLNLANGLDK--------RGY----DVTLVVLRDEGDYL----ELLPSNV-- 51 (353) T ss_pred CeEEEeecc-----------cCCCcchhHHHHHHHHHh--------cCc----eEEEEEcCCCCccc----cccccch-- Confidence 578888652 279999999999999876 799 99999864322110 0000000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~H 438 (687) ............ ...+. +...+.+.+ + ..+||+||+|+. ...+++.+.++. ++|.+++.| T Consensus 52 ~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~-~--~~~~dii~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 112 (353) T cd03811 52 KLIPVRVLKLKS-----------LRDLL----AILRLRRLL-R--KEKPDVVISHLTTTPNVLALLAARL-GTKLIVWEH 112 (353) T ss_pred hhhceeeeeccc-----------ccchh----HHHHHHHHH-H--hcCCCEEEEcCccchhHHHHHHhhc-CCceEEEEc Confidence 000011111000 01111 111233333 3 358999999998 666666665555 999999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) +........... .. ..+...++.+|.+++.|..... .+.. .+ +... T Consensus 113 ~~~~~~~~~~~~--------~~-----~~~~~~~~~~d~ii~~s~~~~~-------~~~~--------~~------~~~~ 158 (353) T cd03811 113 NSLSLELKRKLR--------LL-----LLIRKLYRRADKIVAVSEGVKE-------DLLK--------LL------GIPP 158 (353) T ss_pred Ccchhhhccchh--------HH-----HHHHhhccccceEEEeccchhh-------hHHH--------hh------cCCc Confidence 875432211000 00 1345778999999998765432 1211 11 1112 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .++.+||||+|.+.+.+...... ......++++|+++||+.+.||++.+++|+.++. T Consensus 159 ~~~~vi~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~ 215 (353) T cd03811 159 DKIEVIYNPIDIEEIRALAEEPL-----------------------ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLR 215 (353) T ss_pred cccEEecCCcChhhcCcccchhh-----------------------hcCCCCCceEEEEEecchhhcChHHHHHHHHHhh Confidence 48999999999887765432110 0112356789999999999999999999999887 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CC Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PI 677 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gF 677 (687) ...++.+++++|++.. . ..+.++++++++.++|.|.|+ . +++.++|+.+ |++|+||.+ || T Consensus 216 ~~~~~~~l~i~G~~~~---------~---~~~~~~~~~~~~~~~v~~~g~-~--~~~~~~~~~~----d~~i~ps~~e~~ 276 (353) T cd03811 216 KEGPDARLVILGDGPL---------R---EELEALAKELGLADRVHFLGF-Q--SNPYPYLKAA----DLFVLSSRYEGF 276 (353) T ss_pred hcCCCceEEEEcCCcc---------H---HHHHHHHHhcCCCccEEEecc-c--CCHHHHHHhC----CEEEeCcccCCC Confidence 6656789998885422 1 244578899999999999995 3 4688888864 999999999 99 Q ss_pred chhhhcccC Q 005625 678 PLNFLPSYK 686 (687) Q Consensus 678 GLviLEa~~ 686 (687) |++++||.+ T Consensus 277 ~~~~~Ea~~ 285 (353) T cd03811 277 PNVLLEAMA 285 (353) T ss_pred CcHHHHHHH Confidence 999999975 No 46 >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. Probab=99.85 E-value=8.2e-20 Score=190.31 Aligned_cols=292 Identities=16% Similarity=0.100 Sum_probs=183.0 Q ss_pred eEEEEccCCCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 280 NVVILSPHGYFGQANVLGLP-DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~P-dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) ||++++.+- .| ..||..+|+.+++++|.+ .|+ .|.+++........ ..... . T Consensus 1 ~ili~~~~~---------~~~~~gG~~~~~~~l~~~L~~--------~~~----~v~~~~~~~~~~~~----~~~~~-~- 53 (365) T cd03809 1 RILIDARFL---------ASRRPTGIGRYARELLRALLK--------LDP----EEVLLLLPGAPGLL----LLPLR-A- 53 (365) T ss_pred CEEEechhh---------hcCCCCcHHHHHHHHHHHHHh--------cCC----ceEEEEecCccccc----cccch-h- Confidence 577777552 23 789999999999999988 799 88888765322110 00000 0 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEec Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~H 438 (687) .... ..... ....+.....+.......+ . ..+||+||+|++..... +..++|+++++| T Consensus 54 --~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~-~--~~~~Dii~~~~~~~~~~-----~~~~~~~i~~~h 111 (365) T cd03809 54 --ALRL---LLRLP---------RRLLWGLLFLLRAGDRLLL-L--LLGLDLLHSPHNTAPLL-----RLRGVPVVVTIH 111 (365) T ss_pred --cccc---ccccc---------cccccchhhHHHHHHHHHh-h--hcCCCeeeecccccCcc-----cCCCCCEEEEec Confidence 0000 00000 0011111111111111112 2 36899999998765443 678999999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) ++....+......+. ... ....++..++.+|.+++.|..... .+.. .+ +... T Consensus 112 d~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~d~~i~~s~~~~~-------~~~~--------~~------~~~~ 163 (365) T cd03809 112 DLIPLRFPEYFSPGF-----RRY--FRRLLRRALRRADAIITVSEATKR-------DLLR--------YL------GVPP 163 (365) T ss_pred cchhhhCcccCCHHH-----HHH--HHHHHHHHHHHcCEEEEccHHHHH-------HHHH--------Hh------CcCH Confidence 875432221110000 000 012356789999999998865432 1111 01 1112 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .++.++|||+|...+.+..... + .. ....++++.|+++||+.+.||++.+++++..+. T Consensus 164 ~~~~vi~~~~~~~~~~~~~~~~-~-----~~----------------~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~ 221 (365) T cd03809 164 DKIVVIPLGVDPRFRPPPAEAE-V-----LR----------------ALYLLPRPYFLYVGTIEPRKNLERLLEAFARLP 221 (365) T ss_pred HHEEeeccccCccccCCCchHH-H-----HH----------------HhcCCCCCeEEEeCCCccccCHHHHHHHHHHHH Confidence 3899999999988776644322 1 00 012346789999999999999999999999887 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CC Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PI 677 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gF 677 (687) .....++++++|++.+ ... .....++++++.++|.|+|+ ++.+++.++|+.+ |++++||.+ +| T Consensus 222 ~~~~~~~l~i~G~~~~-------~~~----~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~----d~~l~ps~~e~~ 285 (365) T cd03809 222 AKGPDPKLVIVGKRGW-------LNE----ELLARLRELGLGDRVRFLGY-VSDEELAALYRGA----RAFVFPSLYEGF 285 (365) T ss_pred HhcCCCCEEEecCCcc-------ccH----HHHHHHHHcCCCCeEEECCC-CChhHHHHHHhhh----hhhcccchhccC Confidence 6555678998885432 111 11223367899999999995 8889999999864 999999999 99 Q ss_pred chhhhcccC Q 005625 678 PLNFLPSYK 686 (687) Q Consensus 678 GLviLEa~~ 686 (687) |++++||.+ T Consensus 286 ~~~~~Ea~a 294 (365) T cd03809 286 GLPVLEAMA 294 (365) T ss_pred CCCHHHHhc Confidence 999999976 No 47 >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. Probab=99.85 E-value=2.3e-19 Score=184.85 Aligned_cols=287 Identities=13% Similarity=0.073 Sum_probs=187.2 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++++-. ..||.++++.+++++|.+ +|+ +|.+++...... ....+.. T Consensus 1 ~i~~i~~~~-----------~~gG~~~~~~~l~~~l~~--------~~~----~v~~~~~~~~~~----~~~~~~~---- 49 (365) T cd03807 1 KVLHVITGL-----------DVGGAERMLVRLLKGLDR--------DRF----EHVVISLTDRGE----LGEELEE---- 49 (365) T ss_pred CeEEEEeec-----------cCccHHHHHHHHHHHhhh--------ccc----eEEEEecCcchh----hhHHHHh---- Confidence 577776531 339999999999999877 799 888887532111 1111111 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHc-CCCcEEEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~-lgVP~V~T~H 438 (687) .++.++.++..... ..+.. ...+.+.+ + +.+||+||+|.......+.+++.. .++|.+.+.| T Consensus 50 ~~i~v~~~~~~~~~----------~~~~~----~~~~~~~~-~--~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 112 (365) T cd03807 50 AGVPVYCLGKRPGR----------PDPGA----LLRLYKLI-R--RLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIR 112 (365) T ss_pred cCCeEEEEeccccc----------ccHHH----HHHHHHHH-H--hhCCCEEEeccccccHHHHHHHHhcCCCcEEEEec Confidence 36777777654320 01111 11233333 2 368999999987777777776666 7889999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) ....... .|.. ..+ ...+....+.+|.+++.|..... .+..+ +... T Consensus 113 ~~~~~~~-----~~~~--~~~-----~~~~~~~~~~~~~~i~~s~~~~~-------~~~~~---------------~~~~ 158 (365) T cd03807 113 HSDLDLG-----KKST--RLV-----ARLRRLLSSFIPLIVANSAAAAE-------YHQAI---------------GYPP 158 (365) T ss_pred CCccccc-----chhH--hHH-----HHHHHHhccccCeEEeccHHHHH-------HHHHc---------------CCCh Confidence 8753321 1110 001 11234566788998888765433 12110 1123 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .++.++|||+|...|.+....... .++ .+..++++++|+++||+.+.||++.+++|+..+. T Consensus 159 ~~~~vi~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365) T cd03807 159 KKIVVIPNGVDTERFSPDLDARAR-------LRE------------ELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365) T ss_pred hheeEeCCCcCHHhcCCcccchHH-------HHH------------hcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH Confidence 489999999998877654432211 101 1223456789999999999999999999999877 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHH-HcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-C Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK-TYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-P 676 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~-elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-g 676 (687) ...++.+++++|.+.. . . .....+. ++++.++|.|+|. .+++.++|+.+ |++|+||.+ | T Consensus 220 ~~~~~~~l~i~G~~~~------~---~---~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~a----di~v~ps~~e~ 280 (365) T cd03807 220 KKFPNARLLLVGDGPD------R---A---NLELLALKELGLEDKVILLGE---RSDVPALLNAL----DVFVLSSLSEG 280 (365) T ss_pred HhCCCeEEEEecCCcc------h---h---HHHHHHHHhcCCCceEEEccc---cccHHHHHHhC----CEEEeCCcccc Confidence 6567788998875422 1 1 2223344 8899999999994 35788999864 999999999 9 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) ||++++||.+ T Consensus 281 ~~~~~~Ea~a 290 (365) T cd03807 281 FPNVLLEAMA 290 (365) T ss_pred CCcHHHHHHh Confidence 9999999975 No 48 >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. Probab=99.84 E-value=1.1e-19 Score=200.90 Aligned_cols=300 Identities=15% Similarity=0.119 Sum_probs=183.5 Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCC------CCccccccccccCCCCeEEEEec-CCCCc Q 005625 301 TGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAK------GTTCNQRLERVSGTEHTHILRVP-FRSEK 373 (687) Q Consensus 301 tGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~------g~~~~q~lE~i~~~~~v~IlRvP-~~~~~ 373 (687) -||.++-+.+.+++|.+. ..|| +|.|+|....... -..|-+ .+. . .++.++++. .+.. T Consensus 13 ggg~ervl~~a~~~l~~~------~~~~----~v~i~t~~~~~~~~~~l~~~~~~f~-~~~-~--~~~~~~~~~~~~~~- 77 (419) T cd03806 13 GGGGERVLWCAVRALQKR------YPNN----IVVIYTGDLDATPEEILEKVESRFN-IEL-D--RPRIVFFLLKYRKL- 77 (419) T ss_pred CCCchHHHHHHHHHHHHh------CCCc----EEEEECCCCCCCHHHHHHHHHHhcC-eec-C--CCceEEEEecceee- Confidence 359999999999999772 1256 9999997632210 000111 111 1 245555553 2110 Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCC-CC-hhHHHHHHHHcCCCcEEEEecCCcc--ccC---- Q 005625 374 GILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNY-SD-GNLVASLLAYKMGITQCTIAHALEK--TKY---- 445 (687) Q Consensus 374 ~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hy-s~-aglvA~llAr~lgVP~V~T~HaL~~--~ky---- 445 (687) +-++...|+.++ .++...+...+.+..+.+||||..|. +. +..++.++ .++|+|.-.|--.. ... T Consensus 78 -~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~---~~~~~i~y~h~P~~~~d~l~~~~ 150 (419) T cd03806 78 -VEASTYPRFTLL---GQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLL---GGCPVGAYVHYPTISTDMLQKVR 150 (419) T ss_pred -eccccCCceeeH---HHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHh---cCCeEEEEecCCcchHHHHHHHh Confidence 111222233332 22333333333332245899999886 33 23333333 38899999992100 000 Q ss_pred ------------CCCch-hhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeec Q 005625 446 ------------PDSDI-YWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVH 512 (687) Q Consensus 446 ------------~~s~l-~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~ 512 (687) ..+.. .+ +...|.. .....++.+++.||.||++|..... .+.. .+. T Consensus 151 ~~~~~~~~~~~~~~~~~~~~--~k~~y~~-~~~~~~~~~~~~aD~ii~~S~~~~~-------~~~~--------~~~--- 209 (419) T cd03806 151 SREASYNNSATIARSPVLSK--AKLLYYR-LFAFLYGLAGSFADVVMVNSTWTRN-------HIRS--------LWK--- 209 (419) T ss_pred hccccccCccchhccchHHH--HHHHHHH-HHHHHHHHHhhcCCEEEECCHHHHH-------HHHH--------HhC--- Confidence 00000 00 0000100 0002578899999999998864432 1111 110 Q ss_pred ccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHH Q 005625 513 GIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVE 592 (687) Q Consensus 513 gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVe 592 (687) ...|+.|||||+|.+.|.+.... ...++++|+++||+.+.||++.+++ T Consensus 210 ----~~~~~~vi~~gvd~~~~~~~~~~----------------------------~~~~~~~il~vgr~~~~K~~~~li~ 257 (419) T cd03806 210 ----RNTKPSIVYPPCDVEELLKLPLD----------------------------EKTRENQILSIAQFRPEKNHPLQLR 257 (419) T ss_pred ----cCCCcEEEcCCCCHHHhcccccc----------------------------cccCCcEEEEEEeecCCCCHHHHHH Confidence 12389999999998776543210 1234579999999999999999999 Q ss_pred HHhhccccCC-----CceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCc Q 005625 593 CYGKNSQLRE-----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKG 667 (687) Q Consensus 593 Afa~l~~l~~-----~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~d 667 (687) ||+++.+..+ +.+|+|+|++.+ +.+ .+..++++++++++++.++|.|+|. ++.+++.++|+.+ | T Consensus 258 A~~~l~~~~~~~~~~~~~lvivG~~~~---~~~---~~~~~~L~~~~~~l~l~~~V~f~g~-v~~~~l~~~l~~a----d 326 (419) T cd03806 258 AFAKLLKRLPEEIKEKIKLVLIGSCRN---EDD---EKRVEDLKLLAKELGLEDKVEFVVN-APFEELLEELSTA----S 326 (419) T ss_pred HHHHHHHhCcccccCceEEEEEcCCCC---ccc---HHHHHHHHHHHHHhCCCCeEEEecC-CCHHHHHHHHHhC----e Confidence 9998865433 478999987533 112 2245678899999999999999995 8999999999964 9 Q ss_pred EEEEcCCC-CCchhhhcccC Q 005625 668 AFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 668 VFVlPSl~-gFGLviLEa~~ 686 (687) +||+||.. +||++++||.+ T Consensus 327 v~v~~s~~E~Fgi~~lEAMa 346 (419) T cd03806 327 IGLHTMWNEHFGIGVVEYMA 346 (419) T ss_pred EEEECCccCCcccHHHHHHH Confidence 99999999 99999999975 No 49 >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=99.84 E-value=2.3e-19 Score=186.45 Aligned_cols=286 Identities=16% Similarity=0.142 Sum_probs=183.8 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++|... .|..||...++..++++|.+ +|| +|.++|....... .... T Consensus 1 kIl~i~~~~---------~p~~~G~~~~~~~l~~~L~~--------~g~----~v~~~~~~~~~~~------~~~~---- 49 (364) T cd03814 1 RIAIVTDTF---------LPQVNGVVRTLQRLVEHLRA--------RGH----EVLVIAPGPFRES------EGPA---- 49 (364) T ss_pred CeEEEeccc---------CccccceehHHHHHHHHHHH--------CCC----EEEEEeCCchhhc------cCCC---- Confidence 688998652 36679999999999998877 899 9999986432210 0000 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCC-hhHHHHHHHHcCCCcEEEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSD-GNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~-aglvA~llAr~lgVP~V~T~H 438 (687) ....+..++......+ ++.+.. ...+.+.+ + ..+||+||+|... .+..+..++++.++|++.+.| T Consensus 50 ~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~-~--~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 115 (364) T cd03814 50 RVVPVPSVPLPGYPEI------RLALPP-----RRRVRRLL-D--AFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYH 115 (364) T ss_pred CceeecccccCcccce------Eecccc-----hhhHHHHH-H--hcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEe Confidence 1222322222211100 011110 01122222 2 3689999999653 456777888899999999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) .............+ . ..+. ...++...+.+|.|++.|..... .+.. ... T Consensus 116 ~~~~~~~~~~~~~~--~---~~~~--~~~~~~~~~~~d~i~~~s~~~~~-------~~~~-----------------~~~ 164 (364) T cd03814 116 TDFPEYLRYYGLGP--L---SWLA--WAYLRWFHNRADRVLVPSPSLAD-------ELRA-----------------RGF 164 (364) T ss_pred cChHHHhhhcccch--H---hHhh--HHHHHHHHHhCCEEEeCCHHHHH-------HHhc-----------------cCC Confidence 75321100000000 0 0000 11235668899999999876542 1110 113 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .++.+++||+|.+.|.|....... +. .+ ...+++.|+++||+.+.||++.+++++.++. T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~~~~----~~----------------~~-~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~ 223 (364) T cd03814 165 RRVRLWPRGVDTELFHPRRRDEAL----RA----------------RL-GPPDRPVLLYVGRLAPEKNLEALLDADLPLR 223 (364) T ss_pred CceeecCCCccccccCcccccHHH----HH----------------Hh-CCCCCeEEEEEeccccccCHHHHHHHHHHhh Confidence 489999999999888765432210 01 11 1345678999999999999999999999887 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CC Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PI 677 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gF 677 (687) .. ++.+++++|++.+ . +.+. +..++|.|.|+ ++.+++.++|+.+ |++++||.+ +| T Consensus 224 ~~-~~~~l~i~G~~~~---------~---~~~~------~~~~~v~~~g~-~~~~~~~~~~~~~----d~~l~~s~~e~~ 279 (364) T cd03814 224 RR-PPVRLVIVGDGPA---------R---ARLE------ARYPNVHFLGF-LDGEELAAAYASA----DVFVFPSRTETF 279 (364) T ss_pred hc-CCceEEEEeCCch---------H---HHHh------ccCCcEEEEec-cCHHHHHHHHHhC----CEEEECcccccC Confidence 65 6788998886422 1 1111 56789999995 8889999999964 999999999 99 Q ss_pred chhhhcccC Q 005625 678 PLNFLPSYK 686 (687) Q Consensus 678 GLviLEa~~ 686 (687) |++++||.+ T Consensus 280 ~~~~lEa~a 288 (364) T cd03814 280 GLVVLEAMA 288 (364) T ss_pred CcHHHHHHH Confidence 999999975 No 50 >PLN02275 transferase, transferring glycosyl groups Probab=99.84 E-value=5.5e-19 Score=191.71 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=176.4 Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccc Q 005625 299 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 378 (687) Q Consensus 299 PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~ 378 (687) ||.|+. ..+.+++++|.+ +|+ .+|.|++.. +. | +........+++|+|+|. +... . T Consensus 13 ~~~g~~-~r~~~~~~~l~~--------~~~---~~v~vi~~~--~~-~-----~~~~~~~~~~v~v~r~~~-~~~~---~ 68 (371) T PLN02275 13 GDFGRS-PRMQYHALSLAR--------QAS---FQVDVVAYG--GS-E-----PIPALLNHPSIHIHLMVQ-PRLL---Q 68 (371) T ss_pred cCCCCC-HHHHHHHHHHHh--------cCC---ceEEEEEec--CC-C-----CCHHHhcCCcEEEEECCC-cccc---c Confidence 566665 577778888877 665 168888753 21 1 111112225799999986 3210 0 Q ss_pred ccccccchh---hHHH---HHHHHHHHHHHhcCCCceEEEeCCCC---hhHHHHHHHHcCCCcEEEEecCCccccCCCCc Q 005625 379 WISRFDVWP---YLET---FTEDVGSEITAELQGFPDFIIGNYSD---GNLVASLLAYKMGITQCTIAHALEKTKYPDSD 449 (687) Q Consensus 379 ~isr~~iwp---~Le~---f~~~~~~~L~~~~~~~PDLIH~Hys~---aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~ 449 (687) -+++ ++. |+.. +...+...+.. ...+||+||+|... +.++|.++++..++|+|+|.|++...... .+ T Consensus 69 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-~~ 144 (371) T PLN02275 69 RLPR--VLYALALLLKVAIQFLMLLWFLCV-KIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLA-LS 144 (371) T ss_pred cccc--chHHHHHHHHHHHHHHHHHHHHHh-hCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHh-cc Confidence 0111 122 2211 11122222211 14799999998643 35677888888999999999986321100 00 Q ss_pred hhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCC Q 005625 450 IYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD 529 (687) Q Consensus 450 l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD 529 (687) .... ...+.+.. ..|+..++.||.||++|..... ....+ + | + ++.|||||+ T Consensus 145 ~~~~--~~~~~~~~--~~e~~~~~~ad~ii~~S~~~~~-------~l~~~--------~----g--~---~i~vi~n~~- 195 (371) T PLN02275 145 LGRS--HPLVRLYR--WYERHYGKMADGHLCVTKAMQH-------ELDQN--------W----G--I---RATVLYDQP- 195 (371) T ss_pred cCCC--CHHHHHHH--HHHHHHHhhCCEEEECCHHHHH-------HHHHh--------c----C--C---CeEEECCCC- Confidence 0000 00011111 2467889999999999875432 11100 0 1 1 288999995 Q ss_pred CCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc----------- Q 005625 530 MDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS----------- 598 (687) Q Consensus 530 ~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~----------- 598 (687) .+.|.|...... . ...+..+++++||+.+.||++.|++|+..+. T Consensus 196 ~~~f~~~~~~~~------------------------~-~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~ 250 (371) T PLN02275 196 PEFFRPASLEIR------------------------L-RPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESD 250 (371) T ss_pred HHHcCcCCchhc------------------------c-cCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhcccccc Confidence 466655432100 0 1123357889999999999999999998763 Q ss_pred ------ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEc Q 005625 599 ------QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQV 672 (687) Q Consensus 599 ------~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlP 672 (687) ...++.+++|+|+|+. .++++++++++|+++ |.|.|..+++++++++|+.+ |+||+| T Consensus 251 ~~~~~~~~~~~i~l~ivG~G~~------------~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~a----Dv~v~~ 313 (371) T PLN02275 251 SASGKQSLYPRLLFIITGKGPQ------------KAMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSA----DLGVSL 313 (371) T ss_pred ccccccccCCCeEEEEEeCCCC------------HHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhC----CEEEEe Confidence 1235688999986532 246678899999987 77755247899999999965 999986 Q ss_pred C--C-C-CCchhhhcccC Q 005625 673 Y--V-H-PIPLNFLPSYK 686 (687) Q Consensus 673 S--l-~-gFGLviLEa~~ 686 (687) + . . +||++++||.+ T Consensus 314 ~~s~~~e~~p~~llEAmA 331 (371) T PLN02275 314 HTSSSGLDLPMKVVDMFG 331 (371) T ss_pred ccccccccccHHHHHHHH Confidence 3 3 3 79999999975 No 51 >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. Probab=99.84 E-value=1.1e-18 Score=179.41 Aligned_cols=286 Identities=18% Similarity=0.209 Sum_probs=185.0 Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccccc Q 005625 301 TGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWI 380 (687) Q Consensus 301 tGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~i 380 (687) .||...++.+++++|.+ +|+ +|.++|....... ......... ........... .+. T Consensus 13 ~~g~~~~~~~~~~~l~~--------~g~----~v~v~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-----~~~ 68 (377) T cd03798 13 NGGGGIFVKELARALAK--------RGV----EVTVLAPGPWGPK------LLDLLKGRL-VGVERLPVLLP-----VVP 68 (377) T ss_pred CchHHHHHHHHHHHHHH--------CCC----ceEEEecCCCCCC------chhhccccc-ccccccccCcc-----hhh Confidence 68999999999988886 899 9999986432211 000000000 00000000000 000 Q ss_pred ccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccc Q 005625 381 SRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKY 459 (687) Q Consensus 381 sr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y 459 (687) .....+ ....+...+.+.+.. ...+||+||+|+. ..+.++..+++..++|.+.+.|+.......... + T Consensus 69 ~~~~~~-~~~~~~~~~~~~l~~-~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--~------- 137 (377) T cd03798 69 LLKGPL-LYLLAARALLKLLKL-KRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKR--L------- 137 (377) T ss_pred ccccch-hHHHHHHHHHHHHhc-ccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchh--h------- Confidence 000001 111223333333331 2479999999975 456778888899999999999987543221100 0 Q ss_pred cccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChH Q 005625 460 HFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEK 539 (687) Q Consensus 460 ~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~ 539 (687) ....+...++.+|.|++.|..... .+.. . .....++.++|||+|.+.|.+.... T Consensus 138 ----~~~~~~~~~~~~d~ii~~s~~~~~-------~~~~--------~-------~~~~~~~~~i~~~~~~~~~~~~~~~ 191 (377) T cd03798 138 ----LRALLRRALRRADAVIAVSEALAD-------ELKA--------L-------GIDPEKVTVIPNGVDTERFSPADRA 191 (377) T ss_pred ----HHHHHHHHHhcCCeEEeCCHHHHH-------HHHH--------h-------cCCCCceEEcCCCcCcccCCCcchH Confidence 011345678999999999865543 1211 0 1123489999999999888765432 Q ss_pred HHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCC Q 005625 540 QKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSK 619 (687) Q Consensus 540 ~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~ 619 (687) .. .. .....+++.|+++|++.+.||++.+++++..+....++..++++|.+.+ T Consensus 192 ~~---------~~-------------~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~----- 244 (377) T cd03798 192 EA---------RK-------------LGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL----- 244 (377) T ss_pred HH---------Hh-------------ccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc----- Confidence 11 00 1123467899999999999999999999998776556778887764421 Q ss_pred ChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 620 DREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 620 d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) .+.+.++++++++.+.|.+.|+ ++++++.++|+.+ |++++||.+ +||++++||.+ T Consensus 245 -------~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~a----d~~i~~~~~~~~~~~~~Ea~~ 300 (377) T cd03798 245 -------REALEALAAELGLEDRVTFLGA-VPHEEVPAYYAAA----DVFVLPSLREGFGLVLLEAMA 300 (377) T ss_pred -------hHHHHHHHHhcCCcceEEEeCC-CCHHHHHHHHHhc----CeeecchhhccCChHHHHHHh Confidence 1345667888999999999995 8999999999864 999999999 99999999975 No 52 >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=99.84 E-value=1.6e-20 Score=210.31 Aligned_cols=212 Identities=16% Similarity=0.172 Sum_probs=153.4 Q ss_pred CCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCcccc----CCCCchhhhh--hccc-ccccchhHHHHHHHhcCCE Q 005625 406 GFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTK----YPDSDIYWKK--FDEK-YHFSCQFTADLIAMNNADF 477 (687) Q Consensus 406 ~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~k----y~~s~l~w~~--~~~~-y~~s~rf~aE~iam~~AD~ 477 (687) .++|+||+|.. .++++|.++++..|+|+|+|.|+..... ..... |.. +... .++.. ..++.+++.||. T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~--~l~~~~~~~ad~ 247 (475) T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQAD--WEMSYFRRLWIRFFE--SLGRLAYQAADR 247 (475) T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcc--cchHHHHHHHHHHHH--HHHHHHHHhCCE Confidence 58999999965 5788999999999999999999963211 00000 100 0000 01111 245778999999 Q ss_pred EEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCC Q 005625 478 IITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDP 557 (687) Q Consensus 478 IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~ 557 (687) ||+.|...... ..++ +....|+.|||||+|.+.|.+.... T Consensus 248 Ii~~s~~~~~~----~~~~------------------g~~~~ki~vIpNgid~~~f~~~~~~------------------ 287 (475) T cd03813 248 ITTLYEGNRER----QIED------------------GADPEKIRVIPNGIDPERFAPARRA------------------ 287 (475) T ss_pred EEecCHHHHHH----HHHc------------------CCCHHHeEEeCCCcCHHHcCCcccc------------------ Confidence 99988654320 0011 1122399999999999887663210 Q ss_pred CcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHc Q 005625 558 EQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTY 637 (687) Q Consensus 558 ~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~el 637 (687) ...+++++|+++||+.+.||++.|++|+..+.+..++.+++|+|++.. +. ...++++++++++ T Consensus 288 ---------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~-----~~---~~~~e~~~li~~l 350 (475) T cd03813 288 ---------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDE-----DP---EYAEECRELVESL 350 (475) T ss_pred ---------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCc-----Ch---HHHHHHHHHHHHh Confidence 013457899999999999999999999998877667889999885421 12 2456778899999 Q ss_pred CCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 638 KLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 638 gL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |+.++|+|+| ++++.++|+.+ |+||+||.. |||++++||.+ T Consensus 351 ~l~~~V~f~G----~~~v~~~l~~a----Dv~vlpS~~Eg~p~~vlEAma 392 (475) T cd03813 351 GLEDNVKFTG----FQNVKEYLPKL----DVLVLTSISEGQPLVILEAMA 392 (475) T ss_pred CCCCeEEEcC----CccHHHHHHhC----CEEEeCchhhcCChHHHHHHH Confidence 9999999999 35789999854 999999999 99999999975 No 53 >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. Probab=99.83 E-value=1.5e-18 Score=181.72 Aligned_cols=199 Identities=19% Similarity=0.179 Sum_probs=146.4 Q ss_pred CCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCH Q 005625 405 QGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTY 483 (687) Q Consensus 405 ~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~ 483 (687) ..+||+||+|++ ....++.+.++..++|+++|.|+....... .. ..+...++.+|.|+++|. T Consensus 77 ~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~vi~~s~ 139 (355) T cd03799 77 RLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRSP--DA---------------IDLDEKLARADFVVAISE 139 (355) T ss_pred hcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEecccccccC--ch---------------HHHHHHHhhCCEEEECCH Confidence 368999999987 455566666666789999999975321110 00 124567889999999987 Q ss_pred HHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccc Q 005625 484 QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 484 qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) .... .+..+ + +....++.+||||+|.+.|.+.. . T Consensus 140 ~~~~-------~l~~~--------~------~~~~~~~~vi~~~~d~~~~~~~~---~---------------------- 173 (355) T cd03799 140 YNRQ-------QLIRL--------L------GCDPDKIHVVHCGVDLERFPPRP---P---------------------- 173 (355) T ss_pred HHHH-------HHHHh--------c------CCCcccEEEEeCCcCHHHcCCcc---c---------------------- Confidence 6543 12110 0 11234899999999987665432 0 Q ss_pred ccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcE Q 005625 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 643 (687) Q Consensus 564 ~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V 643 (687) ....+++.|+++||+.+.||++.+++++.++....++.+++++|++.. .+.+.+.++++++.++| T Consensus 174 ---~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~------------~~~~~~~~~~~~~~~~v 238 (355) T cd03799 174 ---PPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL------------RDELEALIAELGLEDRV 238 (355) T ss_pred ---cccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc------------HHHHHHHHHHcCCCCeE Confidence 012356789999999999999999999998776556788888886521 23566788899999999 Q ss_pred EEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-------CCchhhhcccC Q 005625 644 RWIAAQTNRARNGELYRYIADTKGAFVQVYVH-------PIPLNFLPSYK 686 (687) Q Consensus 644 ~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-------gFGLviLEa~~ 686 (687) +|.|+ ++.+++..+|+.+ |++++||.+ |||++++||.+ T Consensus 239 ~~~g~-~~~~~l~~~~~~a----di~l~~s~~~~~~~~e~~~~~~~Ea~a 283 (355) T cd03799 239 TLLGA-KSQEEVRELLRAA----DLFVLPSVTAADGDREGLPVVLMEAMA 283 (355) T ss_pred EECCc-CChHHHHHHHHhC----CEEEecceecCCCCccCccHHHHHHHH Confidence 99995 8889999999854 999999983 89999999964 No 54 >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. Probab=99.83 E-value=1.5e-18 Score=177.14 Aligned_cols=272 Identities=15% Similarity=0.179 Sum_probs=181.5 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||++++++- .| .||...++.+++++|.+ +|| +|.++|....+. .. ..+ . T Consensus 1 kI~i~~~~~---------~~-~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~------~~-~~~--~ 49 (348) T cd03820 1 KILFVIPSL---------GN-AGGAERVLSNLANALAE--------KGH----EVTIISLDKGEP------PF-YEL--D 49 (348) T ss_pred CeEEEeccc---------cC-CCChHHHHHHHHHHHHh--------CCC----eEEEEecCCCCC------Cc-ccc--C Confidence 578888652 12 89999999999998877 799 999998643220 01 111 1 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCC-CcEEEEec Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMG-ITQCTIAH 438 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lg-VP~V~T~H 438 (687) +++.+..++...... +. ..+. +...+.+.+ + ..+||+||+|++. ....+.....+ +|.+.+.| T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~----~~~~~~~~l-~--~~~~d~i~~~~~~--~~~~~~~~~~~~~~~i~~~~ 113 (348) T cd03820 50 PKIKVIDLGDKRDSK----LL---ARFK----KLRRLRKLL-K--NNKPDVVISFLTS--LLTFLASLGLKIVKLIVSEH 113 (348) T ss_pred Cccceeecccccccc----hh---cccc----chHHHHHhh-c--ccCCCEEEEcCch--HHHHHHHHhhccccEEEecC Confidence 356666665543210 00 0000 111222223 3 3799999999876 22233333445 49999999 Q ss_pred CCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCC Q 005625 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFD 518 (687) Q Consensus 439 aL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~ 518 (687) ....... ....|. ..+...++.+|.|++.|..... .+. .... T Consensus 114 ~~~~~~~--~~~~~~------------~~~~~~~~~~d~ii~~s~~~~~-------~~~-----------------~~~~ 155 (348) T cd03820 114 NSPDAYK--KRLRRL------------LLRRLLYRRADAVVVLTEEDRA-------LYY-----------------KKFN 155 (348) T ss_pred CCccchh--hhhHHH------------HHHHHHHhcCCEEEEeCHHHHH-------Hhh-----------------ccCC Confidence 7643211 000000 0246778999999998866521 110 1123 Q ss_pred CcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcc Q 005625 519 PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNS 598 (687) Q Consensus 519 pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~ 598 (687) .++.+||||+|...+.+. ...+++.++++||+.+.||++.+++|+.++. T Consensus 156 ~~~~vi~~~~~~~~~~~~-------------------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~ 204 (348) T cd03820 156 KNVVVIPNPLPFPPEEPS-------------------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIA 204 (348) T ss_pred CCeEEecCCcChhhcccc-------------------------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHH Confidence 489999999997654321 0235678999999999999999999999887 Q ss_pred ccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CC Q 005625 599 QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PI 677 (687) Q Consensus 599 ~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gF 677 (687) ...++.+++++|++.+ . +.+.++++++++.++|.|.|+ .+++.++|+.+ |++|+||.+ || T Consensus 205 ~~~~~~~l~i~G~~~~---------~---~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~a----d~~i~ps~~e~~ 265 (348) T cd03820 205 KKHPDWKLRIVGDGPE---------R---EALEALIKELGLEDRVILLGF---TKNIEEYYAKA----SIFVLTSRFEGF 265 (348) T ss_pred hcCCCeEEEEEeCCCC---------H---HHHHHHHHHcCCCCeEEEcCC---cchHHHHHHhC----CEEEeCcccccc Confidence 6667889998885422 1 245567899999999999995 57899999864 999999999 99 Q ss_pred chhhhcccC Q 005625 678 PLNFLPSYK 686 (687) Q Consensus 678 GLviLEa~~ 686 (687) |++++||.+ T Consensus 266 ~~~~~Ea~a 274 (348) T cd03820 266 PMVLLEAMA 274 (348) T ss_pred CHHHHHHHH Confidence 999999975 No 55 >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). Probab=99.82 E-value=1.5e-18 Score=179.73 Aligned_cols=279 Identities=15% Similarity=0.166 Sum_probs=171.0 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGT 359 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~ 359 (687) ||+++|++- ....+||...++.+++++|.+ +|| +|.+++....... . .... T Consensus 1 kIl~i~~~~--------~~~~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~-~--~~~~------ 51 (359) T cd03823 1 RILVVNHLY--------PPRSVGGAEVVAHDLAEALAK--------RGH----EVAVLTAGEDPPR-Q--DKEV------ 51 (359) T ss_pred CeeEEcccC--------CcccccchHHHHHHHHHHHHh--------cCC----ceEEEeCCCCCCC-c--cccc------ Confidence 688998652 122469999999999999987 899 9999976422211 0 0000 Q ss_pred CCeEEEEecC--CCCccccccccccccchhhH-HHHHHHHHHHHHHhcCCCceEEEeCCCC-hhHHHHHHHHcCCCcEEE Q 005625 360 EHTHILRVPF--RSEKGILRQWISRFDVWPYL-ETFTEDVGSEITAELQGFPDFIIGNYSD-GNLVASLLAYKMGITQCT 435 (687) Q Consensus 360 ~~v~IlRvP~--~~~~~~~~~~isr~~iwp~L-e~f~~~~~~~L~~~~~~~PDLIH~Hys~-aglvA~llAr~lgVP~V~ 435 (687) .+..+...+. ......... ....+.+. ..+...+ ..+.+ ..+||+||+|... .+......++..++|.|+ T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~--~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~ 125 (359) T cd03823 52 IGVVVYGRPIDEVLRSALPRD---LFHLSDYDNPAVVAEF-ARLLE--DFRPDVVHFHHLQGLGVSILRAARDRGIPIVL 125 (359) T ss_pred ccceeeccccccccCCCchhh---hhHHHhccCHHHHHHH-HHHHH--HcCCCEEEECCccchHHHHHHHHHhcCCCEEE Confidence 1222222210 000000000 00000000 1111122 22333 3689999999863 333444567788999999 Q ss_pred EecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccc Q 005625 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (687) Q Consensus 436 T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~ 515 (687) +.|+...... +. .......|.++++|..... .+..+ + T Consensus 126 ~~hd~~~~~~------~~---------------~~~~~~~d~ii~~s~~~~~-------~~~~~---------------~ 162 (359) T cd03823 126 TLHDYWLICP------RQ---------------GLFKKGGDAVIAPSRFLLD-------RYVAN---------------G 162 (359) T ss_pred EEeeeeeecc------hh---------------hhhccCCCEEEEeCHHHHH-------HHHHc---------------C Confidence 9997532110 00 0111233999998865432 12111 1 Q ss_pred cCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHh Q 005625 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (687) Q Consensus 516 v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa 595 (687) ....++.+||||+|...+.+... ....++++|+++||+.+.||++.+++|+. T Consensus 163 ~~~~~~~vi~n~~~~~~~~~~~~----------------------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~ 214 (359) T cd03823 163 LFAEKISVIRNGIDLDRAKRPRR----------------------------APPGGRLRFGFIGQLTPHKGVDLLLEAFK 214 (359) T ss_pred CCccceEEecCCcChhhcccccc----------------------------CCCCCceEEEEEecCccccCHHHHHHHHH Confidence 11248999999999876644221 01235678999999999999999999999 Q ss_pred hccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCC- Q 005625 596 KNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYV- 674 (687) Q Consensus 596 ~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl- 674 (687) ++.. ++.+++++|++.. .. .. .... +..++|+++|+ ++++++.++|+.+ |++++||. T Consensus 215 ~l~~--~~~~l~i~G~~~~------~~---~~---~~~~---~~~~~v~~~g~-~~~~~~~~~~~~a----d~~i~ps~~ 272 (359) T cd03823 215 RLPR--GDIELVIVGNGLE------LE---EE---SYEL---EGDPRVEFLGA-YPQEEIDDFYAEI----DVLVVPSIW 272 (359) T ss_pred HHHh--cCcEEEEEcCchh------hh---HH---HHhh---cCCCeEEEeCC-CCHHHHHHHHHhC----CEEEEcCcc Confidence 8765 5788998886522 11 11 1111 67789999995 8889999999864 99999998 Q ss_pred C-CCchhhhcccC Q 005625 675 H-PIPLNFLPSYK 686 (687) Q Consensus 675 ~-gFGLviLEa~~ 686 (687) + |||++++||.+ T Consensus 273 ~e~~~~~~~Ea~a 285 (359) T cd03823 273 PENFPLVIREALA 285 (359) T ss_pred cCCCChHHHHHHH Confidence 5 99999999975 No 56 >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. Probab=99.82 E-value=6.2e-18 Score=173.45 Aligned_cols=275 Identities=17% Similarity=0.175 Sum_probs=180.8 Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccccc Q 005625 301 TGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWI 380 (687) Q Consensus 301 tGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~i 380 (687) .||...++.+++++|.+ +|| +|.++|...... . ..+ ..++.++.+|..... . T Consensus 9 ~~g~~~~~~~l~~~L~~--------~g~----~v~~~~~~~~~~--~----~~~----~~~~~~~~~~~~~~~------~ 60 (359) T cd03808 9 DGGLYSFRLPLIKALRA--------AGY----EVHVVAPPGDEL--E----ELE----ALGVKVIPIPLDRRG------I 60 (359) T ss_pred chhHHHHHHHHHHHHHh--------cCC----eeEEEecCCCcc--c----ccc----cCCceEEeccccccc------c Confidence 58889999999988876 799 999998642221 0 111 236778888765421 0 Q ss_pred ccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHH-cCCCcEEEEecCCccccCCCCchhhhhhcccc Q 005625 381 SRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAY-KMGITQCTIAHALEKTKYPDSDIYWKKFDEKY 459 (687) Q Consensus 381 sr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr-~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y 459 (687) ..+..+. ....+.+.+ + +.+||+||+|....++++.++++ ..+.+++++.|+....... ....+. T Consensus 61 ---~~~~~~~-~~~~~~~~~-~--~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~------ 126 (359) T cd03808 61 ---NPFKDLK-ALLRLYRLL-R--KERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTS-GGLKRR------ 126 (359) T ss_pred ---ChHhHHH-HHHHHHHHH-H--hcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhcc-chhHHH------ Confidence 1111111 111233333 3 47899999998877888888777 4556678888887543211 111110 Q ss_pred cccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChH Q 005625 460 HFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEK 539 (687) Q Consensus 460 ~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~ 539 (687) +. ...++..++.+|.+++.|..... .+..+ + + .....++.++++|+|.+.|.+.... T Consensus 127 -~~--~~~~~~~~~~~d~ii~~s~~~~~-------~~~~~--------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (359) T cd03808 127 -LY--LLLERLALRFTDKVIFQNEDDRD-------LALKL--------G----I-IKKKKTVLIPGSGVDLDRFSPSPEP 183 (359) T ss_pred -HH--HHHHHHHHhhccEEEEcCHHHHH-------HHHHh--------c----C-CCcCceEEecCCCCChhhcCccccc Confidence 00 12356778899999999876543 12111 0 0 0002377888999998766442210 Q ss_pred HHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCC Q 005625 540 QKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSK 619 (687) Q Consensus 540 ~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~ 619 (687) ...+++.|+++||+.+.||++.+++++..+....++.+++++|++.. T Consensus 184 ----------------------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~----- 230 (359) T cd03808 184 ----------------------------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE----- 230 (359) T ss_pred ----------------------------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc----- Confidence 12356799999999999999999999998876567789999886532 Q ss_pred ChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 620 DREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 620 d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) .+. .... ++.+++..++|+|.|+ .+++.++|+.+ |++++||.+ |||++++||.+ T Consensus 231 -~~~---~~~~--~~~~~~~~~~v~~~g~---~~~~~~~~~~a----di~i~ps~~e~~~~~~~Ea~~ 285 (359) T cd03808 231 -ENP---AAIL--EIEKLGLEGRVEFLGF---RDDVPELLAAA----DVFVLPSYREGLPRVLLEAMA 285 (359) T ss_pred -chh---hHHH--HHHhcCCcceEEEeec---cccHHHHHHhc----cEEEecCcccCcchHHHHHHH Confidence 111 1111 4677888999999995 56899999864 999999999 99999999975 No 57 >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Probab=99.81 E-value=1.7e-18 Score=193.96 Aligned_cols=342 Identities=18% Similarity=0.160 Sum_probs=198.1 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccccccc- Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS- 357 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~- 357 (687) |||+.+|..- ...-+|||..--+-.|.++|++ .|+ +|.|+....+.-. ..+...++.+. T Consensus 1 M~Il~v~~E~-------~p~vK~GGLaDv~~alpk~L~~--------~g~----~v~v~lP~y~~~~-~~~~~~~~~~~~ 60 (487) T COG0297 1 MKILFVASEI-------FPFVKTGGLADVVGALPKALAK--------RGV----DVRVLLPSYPKVQ-KEWRDLLKVVGK 60 (487) T ss_pred Ccceeeeeee-------cCccccCcHHHHHHHhHHHHHh--------cCC----eEEEEcCCchhhh-hhhccccceeeE Confidence 5899888763 1235899998877777777777 898 8888876665211 11111111110 Q ss_pred ------CCCCeEEEEecCCC--Ccc-cc--ccccccc--cchhh---HHHHHH--HHHHHHHHhcC--CCceEEEeCCCC Q 005625 358 ------GTEHTHILRVPFRS--EKG-IL--RQWISRF--DVWPY---LETFTE--DVGSEITAELQ--GFPDFIIGNYSD 417 (687) Q Consensus 358 ------~~~~v~IlRvP~~~--~~~-~~--~~~isr~--~iwp~---Le~f~~--~~~~~L~~~~~--~~PDLIH~Hys~ 417 (687) +.....++...... .+- ++ +.+..|. ..|.| .++|+. .+..++..... ..|||||+|+|. T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWq 140 (487) T COG0297 61 FGVLKGGRAQLFIVKEYGKDGGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQ 140 (487) T ss_pred eeeeecccceEEEEEeecccCCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHH Confidence 10111111111100 000 00 1112221 12222 122321 22223332222 479999999999 Q ss_pred hhHHHHHHHH----cCCCcEEEEecCCccccCCC-Cchhhhhhcc-ccc-----ccchhHHHHHHHhcCCEEEecCH--- Q 005625 418 GNLVASLLAY----KMGITQCTIAHALEKTKYPD-SDIYWKKFDE-KYH-----FSCQFTADLIAMNNADFIITSTY--- 483 (687) Q Consensus 418 aglvA~llAr----~lgVP~V~T~HaL~~~ky~~-s~l~w~~~~~-~y~-----~s~rf~aE~iam~~AD~IItsS~--- 483 (687) .++++.+++. ...+|.|+|+|++.+..... ....|--+.. .|+ +..++..++-.+..||+|+|+|. T Consensus 141 t~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa 220 (487) T COG0297 141 TGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYA 220 (487) T ss_pred HHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHH Confidence 9999999998 45899999999985433211 0011111110 111 11333456788999999999874 Q ss_pred HHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHH----------hhhhhhhhhhhh Q 005625 484 QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK----------RLTALHGSIEQL 553 (687) Q Consensus 484 qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~----------r~~~l~~~i~~l 553 (687) +|+. + -.| +..|-|+-+- ..-++.-|-||+|.+.+.|.++... +...-+..+. T Consensus 221 ~Ei~-t----~~~----g~gl~g~l~~------~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~-- 283 (487) T COG0297 221 GEIY-T----PEY----GEGLEGLLSW------RSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQ-- 283 (487) T ss_pred Hhhc-c----ccc----cccchhhhhh------ccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHH-- Confidence 3442 0 111 1122233221 1238899999999999988765311 0000011121 Q ss_pred hcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHH Q 005625 554 LFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHEL 633 (687) Q Consensus 554 l~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~l 633 (687) +..+...+.+.|++.++|||+.+||++.+++++..+.+. ..++|++|.+ + .+ ..+.+..+ T Consensus 284 --------~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~--~~~~vilG~g-d------~~---le~~~~~l 343 (487) T COG0297 284 --------ERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQ--GWQLVLLGTG-D------PE---LEEALRAL 343 (487) T ss_pred --------HHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHh--CceEEEEecC-c------HH---HHHHHHHH Confidence 223444455789999999999999999999999877653 4889999854 3 23 23567788 Q ss_pred HHHcCCCCcEEE-cCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhccc Q 005625 634 MKTYKLDGQFRW-IAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSY 685 (687) Q Consensus 634 i~elgL~~~V~f-lG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~ 685 (687) ++++.- ++.. +|+ + ..+++.+.+.+|+|++||++ |||++-++|. T Consensus 344 a~~~~~--~~~~~i~~--~----~~la~~i~agaD~~lmPSrfEPcGL~ql~am 389 (487) T COG0297 344 ASRHPG--RVLVVIGY--D----EPLAHLIYAGADVILMPSRFEPCGLTQLYAM 389 (487) T ss_pred HHhcCc--eEEEEeee--c----HHHHHHHHhcCCEEEeCCcCcCCcHHHHHHH Confidence 888754 5544 453 3 34555555567999999999 9999999986 No 58 >PLN02949 transferase, transferring glycosyl groups Probab=99.80 E-value=6.6e-18 Score=189.43 Aligned_cols=302 Identities=16% Similarity=0.176 Sum_probs=178.5 Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEE----EecCCCCccc Q 005625 300 DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHIL----RVPFRSEKGI 375 (687) Q Consensus 300 dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~Il----RvP~~~~~~~ 375 (687) .-||.++-+.+.+++|.+ .|+++ .|.|+|... |+ +..+.++++..+=++.+. -|+.+ T Consensus 45 ~ggG~ERvl~~a~~~l~~--------~~~~~--~v~iyt~~~-d~---~~~~~l~~~~~~~~i~~~~~~~~v~l~----- 105 (463) T PLN02949 45 DGGGGERVLWCAVRAIQE--------ENPDL--DCVIYTGDH-DA---SPDSLAARARDRFGVELLSPPKVVHLR----- 105 (463) T ss_pred CCCChhhHHHHHHHHHHh--------hCCCC--eEEEEcCCC-CC---CHHHHHHHHHhhcceecCCCceEEEec----- Confidence 346999999999999987 68755 888888653 22 112222222222233221 11110 Q ss_pred cccccccccchhhH---HHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccc--------- Q 005625 376 LRQWISRFDVWPYL---ETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKT--------- 443 (687) Q Consensus 376 ~~~~isr~~iwp~L---e~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~--------- 443 (687) .+.|+++ ..||.+ .+....+...+.......||++.=....+ .+..+++..++|++...|--... T Consensus 106 ~~~~~~~-~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~--~~~pl~~~~~~~v~~yvH~p~~~~dm~~~v~~ 182 (463) T PLN02949 106 KRKWIEE-ETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYA--FTYPLARLFGCKVVCYTHYPTISSDMISRVRD 182 (463) T ss_pred ccccccc-ccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcc--cHHHHHHhcCCcEEEEEeCCcchHHHHHHHhh Confidence 1356653 456652 11111111111111124676555332211 12233445689999999932110 Q ss_pred ---cCCC----Cchhhh-hhcccccccchhH-HHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeeccc Q 005625 444 ---KYPD----SDIYWK-KFDEKYHFSCQFT-ADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGI 514 (687) Q Consensus 444 ---ky~~----s~l~w~-~~~~~y~~s~rf~-aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi 514 (687) .|.. ..-.|. ..+..|. ..+. .+..+.+.||.|||+|...... +.+. + T Consensus 183 ~~~~~~~~~~~a~~~~~~~~k~~Y~--~~~~~l~~~~~~~ad~ii~nS~~t~~~----l~~~-----------~------ 239 (463) T PLN02949 183 RSSMYNNDASIARSFWLSTCKILYY--RAFAWMYGLVGRCAHLAMVNSSWTKSH----IEAL-----------W------ 239 (463) T ss_pred cccccCccchhhccchhHHHHHHHH--HHHHHHHHHHcCCCCEEEECCHHHHHH----HHHH-----------c------ Confidence 0100 000000 0011111 1111 4567789999999988643321 1111 1 Q ss_pred ccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHH Q 005625 515 DVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECY 594 (687) Q Consensus 515 ~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAf 594 (687) ....++.||+||+|.+.|..... ...+++++++++||+.|+||++.+|+|| T Consensus 240 -~~~~~i~vvyp~vd~~~~~~~~~----------------------------~~~~~~~~il~vGR~~~~Kg~~llI~A~ 290 (463) T PLN02949 240 -RIPERIKRVYPPCDTSGLQALPL----------------------------ERSEDPPYIISVAQFRPEKAHALQLEAF 290 (463) T ss_pred -CCCCCeEEEcCCCCHHHcccCCc----------------------------cccCCCCEEEEEEeeeccCCHHHHHHHH Confidence 01237899999999765522110 0023457899999999999999999999 Q ss_pred hhccc----cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEE Q 005625 595 GKNSQ----LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFV 670 (687) Q Consensus 595 a~l~~----l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFV 670 (687) +++.+ ..++.+|+|+||++. .+..+..++++++++++|+.++|.|+|. ++.+++.++|+.+ ++|| T Consensus 291 ~~l~~~~~~~~~~~~LvIvG~~~~------~~~~~~~~eL~~la~~l~L~~~V~f~g~-v~~~el~~ll~~a----~~~v 359 (463) T PLN02949 291 ALALEKLDADVPRPKLQFVGSCRN------KEDEERLQKLKDRAKELGLDGDVEFHKN-VSYRDLVRLLGGA----VAGL 359 (463) T ss_pred HHHHHhccccCCCcEEEEEeCCCC------cccHHHHHHHHHHHHHcCCCCcEEEeCC-CCHHHHHHHHHhC----cEEE Confidence 97643 124688999987632 1122345678899999999999999995 8889999999864 8999 Q ss_pred EcCCC-CCchhhhcccC Q 005625 671 QVYVH-PIPLNFLPSYK 686 (687) Q Consensus 671 lPSl~-gFGLviLEa~~ 686 (687) +||.+ +||++++||.+ T Consensus 360 ~~s~~E~FGivvlEAMA 376 (463) T PLN02949 360 HSMIDEHFGISVVEYMA 376 (463) T ss_pred eCCccCCCChHHHHHHH Confidence 99999 99999999975 No 59 >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. Probab=99.80 E-value=3.7e-18 Score=192.90 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=109.2 Q ss_pred CCCceEEEeCCCChhHHHHHHH-HcCCCcEEEEecCCccccCCCC---chh-------hhhhcccccccchhHHHHHHHh Q 005625 405 QGFPDFIIGNYSDGNLVASLLA-YKMGITQCTIAHALEKTKYPDS---DIY-------WKKFDEKYHFSCQFTADLIAMN 473 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llA-r~lgVP~V~T~HaL~~~ky~~s---~l~-------w~~~~~~y~~s~rf~aE~iam~ 473 (687) ..++||+|+|.|+++..+..++ +..+||+|+|.|+.....+... ++| |.+......+..+...|+.+.. T Consensus 146 ~~~~dViH~HeWm~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590) T cd03793 146 DEPAVVAHFHEWQAGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590) T ss_pred CCCCeEEEEcchhHhHHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh Confidence 4689999999999999999998 7789999999999876654211 111 1111112344555667999999 Q ss_pred cCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhh Q 005625 474 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQL 553 (687) Q Consensus 474 ~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~l 553 (687) .||.+||+|.....+ -+ .||. . +|.. |||||+|.+.|.+..+.+...+..+++|.+. T Consensus 226 ~Ad~fttVS~it~~E-------~~--------~Ll~------~-~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f 282 (590) T cd03793 226 CAHVFTTVSEITAYE-------AE--------HLLK------R-KPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEF 282 (590) T ss_pred hCCEEEECChHHHHH-------HH--------HHhC------C-CCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHH Confidence 999999998654332 00 1222 1 3333 9999999999876553222111112222211 Q ss_pred hcCCCccccccc-CCCCCCCCEEEE-EecCCc-CCCHHHHHHHHhhccc Q 005625 554 LFDPEQNDEHVG-TLSDRSKPIVFS-MARLDH-VKNMTGLVECYGKNSQ 599 (687) Q Consensus 554 l~~~~~~~~~~g-~l~~~~kPiIl~-VGRLdp-~Kni~~LVeAfa~l~~ 599 (687) . ....++ +..+++++++++ +||++. .||++.||+|++++.. T Consensus 283 ~-----~~~~~~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590) T cd03793 283 V-----RGHFYGHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590) T ss_pred H-----HHHHhhhcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHH Confidence 0 000012 334678888877 799999 9999999999998864 No 60 >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. Probab=99.80 E-value=7.7e-19 Score=191.34 Aligned_cols=207 Identities=11% Similarity=0.047 Sum_probs=134.3 Q ss_pred CCCceEEEeCCCChhHHHHHHH-HcCCCcEEEEecCCccccCC---CCchhhhhhccccccc-ch-hHHHHHHHhcCCEE Q 005625 405 QGFPDFIIGNYSDGNLVASLLA-YKMGITQCTIAHALEKTKYP---DSDIYWKKFDEKYHFS-CQ-FTADLIAMNNADFI 478 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llA-r~lgVP~V~T~HaL~~~ky~---~s~l~w~~~~~~y~~s-~r-f~aE~iam~~AD~I 478 (687) ..++|+||+++... +..+. +..++|.|++.|+++...+. ... .|.. ...|+.. .. ...|+..++.||.| T Consensus 102 ~~~~D~v~~~~~~~---~~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~e~~~~~~ad~v 176 (397) T TIGR03087 102 AEPVDAIVVFSSAM---AQYVTPHVRGVPRIVDFVDVDSDKWLQYARTK-RWPL-RWIYRREGRLLLAYERAIAARFDAA 176 (397) T ss_pred hCCCCEEEEecccc---ceeccccccCCCeEeehhhHHHHHHHHHHhcc-Ccch-hHHHHHHHHHHHHHHHHHHhhCCeE Confidence 47899999997543 23332 35689999999986422110 000 0000 0011110 00 12477889999999 Q ss_pred EecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCC Q 005625 479 ITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPE 558 (687) Q Consensus 479 ItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~ 558 (687) |++|..+... +.++ + .....|+.|||||||.+.|.|...... T Consensus 177 i~~S~~~~~~----l~~~-----------~------~~~~~~v~vipngvd~~~f~~~~~~~~----------------- 218 (397) T TIGR03087 177 TFVSRAEAEL----FRRL-----------A------PEAAGRITAFPNGVDADFFSPDRDYPN----------------- 218 (397) T ss_pred EEcCHHHHHH----HHHh-----------C------CCCCCCeEEeecccchhhcCCCccccC----------------- Confidence 9999876541 1111 0 011238999999999988865431100 Q ss_pred cccccccCCCCCCCCEEEEEecCCcCCCHHHHH----HHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHH Q 005625 559 QNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLV----ECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELM 634 (687) Q Consensus 559 ~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LV----eAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li 634 (687) .+ .+++++|+++||+++.||++.++ +++..+....++++++|+|+++. . . + T Consensus 219 ------~~--~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~----------~---~----~ 273 (397) T TIGR03087 219 ------PY--PPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS----------P---A----V 273 (397) T ss_pred ------CC--CCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh----------H---H----H Confidence 11 24568999999999999999998 56666655557889999886521 1 1 2 Q ss_pred HHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC--CCchhhhcccC Q 005625 635 KTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH--PIPLNFLPSYK 686 (687) Q Consensus 635 ~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~--gFGLviLEa~~ 686 (687) ++++..++|+|+|+ ++ ++..+|+.+ |+||+||.. |||++++||.+ T Consensus 274 ~~l~~~~~V~~~G~-v~--~~~~~~~~a----dv~v~Ps~~~eG~~~~~lEAma 320 (397) T TIGR03087 274 RALAALPGVTVTGS-VA--DVRPYLAHA----AVAVAPLRIARGIQNKVLEAMA 320 (397) T ss_pred HHhccCCCeEEeee-cC--CHHHHHHhC----CEEEecccccCCcccHHHHHHH Confidence 33455678999995 65 688888754 999999974 99999999975 No 61 >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. Probab=99.79 E-value=5.8e-18 Score=177.84 Aligned_cols=264 Identities=16% Similarity=0.131 Sum_probs=164.7 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) |||++++.. +..||.++++.+++++|.+ +|| +|.+++.. . . T Consensus 1 MkIl~~~~~-----------~~~gG~~~~~~~l~~~l~~--------~G~----~v~v~~~~---~-------~------ 41 (365) T cd03825 1 MKVLHLNTS-----------DISGGAARAAYRLHRALQA--------AGV----DSTMLVQE---K-------K------ 41 (365) T ss_pred CeEEEEecC-----------CCCCcHHHHHHHHHHHHHh--------cCC----ceeEEEee---c-------c------ Confidence 699999853 3459999999999998887 899 88888742 0 0 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcC--CCcEEEE Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKM--GITQCTI 436 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~l--gVP~V~T 436 (687) . +.+.+ + ..+||+||+|++..+.++..+..++ ++|.|+| T Consensus 42 -------------~-----------------------~~~~~-~--~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (365) T cd03825 42 -------------A-----------------------LISKI-E--IINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWT 82 (365) T ss_pred -------------h-----------------------hhhCh-h--cccCCEEEEEccccCccCHHHHHHHHcCCCEEEE Confidence 0 00011 1 3689999999876655555444444 9999999 Q ss_pred ecCCcccc----CCCCchhhh-hh-----ccccc---ccchhH-HHHHHH-hcCCEEEecCHHHHhcccccccccccccc Q 005625 437 AHALEKTK----YPDSDIYWK-KF-----DEKYH---FSCQFT-ADLIAM-NNADFIITSTYQEIAGTKNTVGQYESHTA 501 (687) Q Consensus 437 ~HaL~~~k----y~~s~l~w~-~~-----~~~y~---~s~rf~-aE~iam-~~AD~IItsS~qEi~~~~~~v~qyes~~~ 501 (687) .|+..... +......|. .. ...+. ...++. .....+ ..++.+|++|..... .+.+. T Consensus 83 ~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~----~~~~~----- 153 (365) T cd03825 83 LHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLAD----CARSS----- 153 (365) T ss_pred cccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHH----HHHhc----- Confidence 99763210 000000000 00 00000 111111 111122 456778887743221 01111 Q ss_pred ccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecC Q 005625 502 FTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL 581 (687) Q Consensus 502 f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRL 581 (687) + .+...|+.|||||+|.+.|.|......+ .. +..+++++++++.|+. T Consensus 154 ------~------~~~~~~~~vi~ngi~~~~~~~~~~~~~~-----~~----------------~~~~~~~~~i~~~~~~ 200 (365) T cd03825 154 ------S------LFKGIPIEVIPNGIDTTIFRPRDKREAR-----KR----------------LGLPADKKIILFGAVG 200 (365) T ss_pred ------c------ccCCCceEEeCCCCcccccCCCcHHHHH-----HH----------------hCCCCCCeEEEEEecC Confidence 0 1123499999999999988775543221 11 1234566778888777 Q ss_pred Cc--CCCHHHHHHHHhhcccc-CCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccC-cccHHH Q 005625 582 DH--VKNMTGLVECYGKNSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN-RARNGE 657 (687) Q Consensus 582 dp--~Kni~~LVeAfa~l~~l-~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~-~~dl~e 657 (687) .. .||++.+++|++.+... .++..++++|++.. +. ..++.++|.|+|+ ++ .+++.+ T Consensus 201 ~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~-------~~------------~~~~~~~v~~~g~-~~~~~~~~~ 260 (365) T cd03825 201 GTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP-------EI------------PPDLPFPVHYLGS-LNDDESLAL 260 (365) T ss_pred CCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch-------hh------------hccCCCceEecCC-cCCHHHHHH Confidence 55 99999999999987653 35667777765421 00 0156789999996 66 778899 Q ss_pred HHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 658 LYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 658 lYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +|+.+ |++++||.+ |||++++||.+ T Consensus 261 ~~~~a----d~~l~ps~~e~~g~~~~Eam~ 286 (365) T cd03825 261 IYSAA----DVFVVPSLQENFPNTAIEALA 286 (365) T ss_pred HHHhC----CEEEeccccccccHHHHHHHh Confidence 99854 999999999 99999999975 No 62 >PRK10125 putative glycosyl transferase; Provisional Probab=99.78 E-value=1.3e-17 Score=184.07 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=124.7 Q ss_pred CCCceEEEeCCCChh---HH--HH----HHHHcCCCcEEEEecCCccc----cCCCCchhhhhhcc------cc-----c Q 005625 405 QGFPDFIIGNYSDGN---LV--AS----LLAYKMGITQCTIAHALEKT----KYPDSDIYWKKFDE------KY-----H 460 (687) Q Consensus 405 ~~~PDLIH~Hys~ag---lv--A~----llAr~lgVP~V~T~HaL~~~----ky~~s~l~w~~~~~------~y-----~ 460 (687) ..+|||||.|...++ +- .. +..+..++|+|.|.|+.... .|....-.|+.--. .| . T Consensus 92 ~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d 171 (405) T PRK10125 92 TPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVD 171 (405) T ss_pred ccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccc Confidence 578999999977663 31 11 11345689999999987421 11111112211000 00 0 Q ss_pred ccchh-----HHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCC Q 005625 461 FSCQF-----TADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 535 (687) Q Consensus 461 ~s~rf-----~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p 535 (687) .+.+. ..-....+.++.+|++|..-.. .+.+ .+ + ..++.|||||||++.+.+ T Consensus 172 ~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~-------~~~~--------~~------~--~~~i~vI~NGid~~~~~~ 228 (405) T PRK10125 172 RAHQLVAGKRQLFREMLALGCQFISPSQHVAD-------AFNS--------LY------G--PGRCRIINNGIDMATEAI 228 (405) T ss_pred hHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHH-------HHHH--------Hc------C--CCCEEEeCCCcCcccccc Confidence 01010 0001223457889988754332 1111 11 1 248999999999754332 Q ss_pred CChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecC--CcCCCHHHHHHHHhhccccCCCceEEEEEccC Q 005625 536 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL--DHVKNMTGLVECYGKNSQLRELVNLVVVAGYI 613 (687) Q Consensus 536 ~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRL--dp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~ 613 (687) ...... . + ..+++++|+++||. ++.||+..|++|+.++ .++..|+++|++. T Consensus 229 ~~~~~~--------~--------------~--~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~ 281 (405) T PRK10125 229 LAELPP--------V--------------R--ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFS 281 (405) T ss_pred cccccc--------c--------------c--cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCC Confidence 211000 0 0 12467899999994 4789999999999865 3467888887541 Q ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 614 DVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 614 d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) . + ...+|.++|+..++.++.++|+.+ |+||+||++ |||++++||.+ T Consensus 282 ~--------~---------------~~~~v~~~g~~~~~~~l~~~y~~a----DvfV~pS~~Egfp~vilEAmA 328 (405) T PRK10125 282 P--------F---------------TAGNVVNHGFETDKRKLMSALNQM----DALVFSSRVDNYPLILCEALS 328 (405) T ss_pred c--------c---------------cccceEEecCcCCHHHHHHHHHhC----CEEEECCccccCcCHHHHHHH Confidence 1 0 024688999755678889999864 999999999 99999999975 No 63 >PLN02501 digalactosyldiacylglycerol synthase Probab=99.77 E-value=7.8e-18 Score=192.50 Aligned_cols=204 Identities=10% Similarity=0.053 Sum_probs=134.2 Q ss_pred CCCceEEEeCCC-ChhHH--HHHHHHcCCCcEEEEecCCccccCCC-CchhhhhhcccccccchhHHHHHHHhcCCEEEe Q 005625 405 QGFPDFIIGNYS-DGNLV--ASLLAYKMGITQCTIAHALEKTKYPD-SDIYWKKFDEKYHFSCQFTADLIAMNNADFIIT 480 (687) Q Consensus 405 ~~~PDLIH~Hys-~aglv--A~llAr~lgVP~V~T~HaL~~~ky~~-s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IIt 480 (687) ..+|||||.+.. .-|+. |..+|++++ |+|.++|+-... |.. ....+ +. .+..+.......-.+||.||+ T Consensus 432 ~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~e-Yl~~y~~g~--L~---~~llk~l~~~v~r~hcD~VIa 504 (794) T PLN02501 432 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLE-YIKREKNGA--LQ---AFFVKHINNWVTRAYCHKVLR 504 (794) T ss_pred ccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcHH-HHhHhcchh--HH---HHHHHHHHHHHHHhhCCEEEc Confidence 368999999975 46777 889999999 999999986432 211 01000 00 000001001111123899999 Q ss_pred cCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcc Q 005625 481 STYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQN 560 (687) Q Consensus 481 sS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~ 560 (687) +|..... +. ...+..| ||||++.|.|......+ ++ T Consensus 505 PS~atq~--------L~--------------------~~vI~nV-nGVDte~F~P~~r~~~~--------r~-------- 539 (794) T PLN02501 505 LSAATQD--------LP--------------------KSVICNV-HGVNPKFLKIGEKVAEE--------RE-------- 539 (794) T ss_pred CCHHHHH--------hc--------------------ccceeec-ccccccccCCcchhHHH--------Hh-------- Confidence 8843221 10 0112222 69999998886543221 11 Q ss_pred cccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCC Q 005625 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (687) Q Consensus 561 ~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~ 640 (687) .......+.++++|||.+.||++.|++|++.+....++.+|+|||+|++ + ++++++++++++ T Consensus 540 -----lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~---------r---eeLe~la~eLgL- 601 (794) T PLN02501 540 -----LGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGED---------A---HEVQRAAKRLDL- 601 (794) T ss_pred -----cCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCcc---------H---HHHHHHHHHcCC- Confidence 1122223458999999999999999999998765556788999886532 2 356678888888 Q ss_pred CcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 641 GQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 641 ~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +|.|+|. .++..++|+.+ ||||+||.+ +||++++||.+ T Consensus 602 -~V~FLG~---~dd~~~lyasa----DVFVlPS~sEgFGlVlLEAMA 640 (794) T PLN02501 602 -NLNFLKG---RDHADDSLHGY----KVFINPSISDVLCTATAEALA 640 (794) T ss_pred -EEEecCC---CCCHHHHHHhC----CEEEECCCcccchHHHHHHHH Confidence 4999995 34566788864 999999999 99999999975 No 64 >TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. Probab=99.73 E-value=8.9e-17 Score=181.95 Aligned_cols=203 Identities=17% Similarity=0.211 Sum_probs=139.2 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCC--chhhhhhcccccccchhHHHHHHHhcCCEEEecC Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDS--DIYWKKFDEKYHFSCQFTADLIAMNNADFIITST 482 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s--~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS 482 (687) ..++||||++-......+ ++....++|.+.+.|+-........ ...|.. .|.+ -...++.+|.||++| T Consensus 209 ~~~~di~i~dr~~~~~~~-~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~---~y~~------~~~~~~~~D~iI~~S 278 (500) T TIGR02918 209 LTKKDIIILDRSTGIGQA-VLENKGPAKLGVVVHAEHFSESATNETYILWNN---YYEY------QFSNADYIDFFITAT 278 (500) T ss_pred CCCCCEEEEcCCcccchH-HHhcCCCceEEEEEChhhhcCccCcchhHHHHH---HHHH------HHhchhhCCEEEECC Confidence 468999999876543323 4466678999999998543221111 111321 1211 123467899999999 Q ss_pred HHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccc Q 005625 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (687) Q Consensus 483 ~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~ 562 (687) .+.... ...++..+ +...+++.+||||++...+.|.. T Consensus 279 ~~~~~~---l~~~~~~~---------------~~~~~ki~viP~g~~~~~~~~~~------------------------- 315 (500) T TIGR02918 279 DIQNQI---LKNQFKKY---------------YNIEPRIYTIPVGSLDELQYPEQ------------------------- 315 (500) T ss_pred HHHHHH---HHHHhhhh---------------cCCCCcEEEEcCCCcccccCccc------------------------- Confidence 643221 11122111 11235899999998754433210 Q ss_pred cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCc Q 005625 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (687) Q Consensus 563 ~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~ 642 (687) .+++..|+++|||.+.||++.|++|++++.+..++++|+|+|++. + .+.++++++++++.++ T Consensus 316 ------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~---------~---~~~l~~~i~~~~l~~~ 377 (500) T TIGR02918 316 ------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG---------E---KQKLQKIINENQAQDY 377 (500) T ss_pred ------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch---------h---HHHHHHHHHHcCCCCe Confidence 112347999999999999999999999887767789999998652 2 2467788999999999 Q ss_pred EEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 643 FRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 643 V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |+|+|+ . ++.++|+.+ |+||+||.+ |||++++||.+ T Consensus 378 V~f~G~-~---~~~~~~~~a----dv~v~pS~~Egfgl~~lEAma 414 (500) T TIGR02918 378 IHLKGH-R---NLSEVYKDY----ELYLSASTSEGFGLTLMEAVG 414 (500) T ss_pred EEEcCC-C---CHHHHHHhC----CEEEEcCccccccHHHHHHHH Confidence 999994 3 588899854 999999999 99999999975 No 65 >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. Probab=99.71 E-value=5.1e-16 Score=170.81 Aligned_cols=203 Identities=13% Similarity=0.154 Sum_probs=143.0 Q ss_pred CCCceEEEeCCCC-hhHHHHHHHHcCCCc-EEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecC Q 005625 405 QGFPDFIIGNYSD-GNLVASLLAYKMGIT-QCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITST 482 (687) Q Consensus 405 ~~~PDLIH~Hys~-aglvA~llAr~lgVP-~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS 482 (687) ..++|++|+++.. .+..+.+++++.+.| +|.|+|+..... . .....+ +.....+++.+|.||+.| T Consensus 125 ~~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~--~------~~~~~~-----~~~~~~~~~~~d~ii~~S 191 (407) T cd04946 125 DGQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLYE--D------RYPSGY-----IPLRRYLLSSLDAVFPCS 191 (407) T ss_pred ccCceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhhh--h------hccccc-----hHHHHHHHhcCCEEEECC Confidence 4678999997654 455566778888887 999999864211 0 000011 112235678999999998 Q ss_pred HHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccc Q 005625 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (687) Q Consensus 483 ~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~ 562 (687) ...... ....| +....++.|+|+|+|...+.+.. T Consensus 192 ~~~~~~---l~~~~------------------~~~~~ki~vi~~gv~~~~~~~~~------------------------- 225 (407) T cd04946 192 EQGRNY---LQKRY------------------PAYKEKIKVSYLGVSDPGIISKP------------------------- 225 (407) T ss_pred HHHHHH---HHHHC------------------CCccccEEEEECCcccccccCCC------------------------- Confidence 765431 00011 11234899999999976554320 Q ss_pred cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCc--eEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCC Q 005625 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELV--NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (687) Q Consensus 563 ~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~--nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~ 640 (687) ...+++.|+++||+.+.||++.|++|+.++....+.. .++++|++. + .+.++++++++++. T Consensus 226 -----~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~---------~---~~~l~~~~~~~~~~ 288 (407) T cd04946 226 -----SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP---------L---EDTLKELAESKPEN 288 (407) T ss_pred -----CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch---------H---HHHHHHHHHhcCCC Confidence 1124568999999999999999999999887655433 456676542 1 23566788888999 Q ss_pred CcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 641 GQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 641 ~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++|.|+|+ ++.+++.++|+.+ .+|+||+||.+ |||++++||.+ T Consensus 289 ~~V~f~G~-v~~~e~~~~~~~~--~~~v~v~~S~~Eg~p~~llEAma 332 (407) T cd04946 289 ISVNFTGE-LSNSEVYKLYKEN--PVDVFVNLSESEGLPVSIMEAMS 332 (407) T ss_pred ceEEEecC-CChHHHHHHHhhc--CCCEEEeCCccccccHHHHHHHH Confidence 99999995 8889999999853 24899999999 99999999976 No 66 >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. Probab=99.69 E-value=5.6e-16 Score=164.73 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=127.6 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCC------CCchhhhhhcccccccchhHHHHHHHhcCCEE Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYP------DSDIYWKKFDEKYHFSCQFTADLIAMNNADFI 478 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~------~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~I 478 (687) ..++|+||++.... +..+....++|.+.+.|+.....+. .....+......+........|..+++.||.| T Consensus 81 ~~~~D~v~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 157 (351) T cd03804 81 LSGYDLVISSSHAV---AKGVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARVDYF 157 (351) T ss_pred ccCCCEEEEcCcHH---hccccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcCCCEE Confidence 46899999876422 2222256788999999974211110 00000000000000001112456778999999 Q ss_pred EecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCC Q 005625 479 ITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPE 558 (687) Q Consensus 479 ItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~ 558 (687) |+.|..... .+.. .+..+..+|+||+|.+.|.+.. T Consensus 158 i~~S~~~~~-------~~~~-----------------~~~~~~~vi~~~~d~~~~~~~~--------------------- 192 (351) T cd03804 158 IANSRFVAR-------RIKK-----------------YYGRDATVIYPPVDTDRFTPAE--------------------- 192 (351) T ss_pred EECCHHHHH-------HHHH-----------------HhCCCcEEECCCCCHhhcCcCC--------------------- Confidence 999876543 1111 0123678999999977664321 Q ss_pred cccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcC Q 005625 559 QNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK 638 (687) Q Consensus 559 ~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elg 638 (687) ..+++++++||+.+.||++.|++|+.+++ .+|+|+|++. +.+ ++.+ + T Consensus 193 -----------~~~~~il~~G~~~~~K~~~~li~a~~~~~-----~~l~ivG~g~---------~~~---~l~~-----~ 239 (351) T cd03804 193 -----------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG-----KRLVVIGDGP---------ELD---RLRA-----K 239 (351) T ss_pred -----------CCCCEEEEEEcCccccChHHHHHHHHHCC-----CcEEEEECCh---------hHH---HHHh-----h Confidence 13457999999999999999999998753 6799988652 122 2222 5 Q ss_pred CCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 639 LDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 639 L~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) +.++|+|+|+ ++++++.++|+.+ |+||+||..+||++++||.+ T Consensus 240 ~~~~V~~~g~-~~~~~~~~~~~~a----d~~v~ps~e~~g~~~~Eama 282 (351) T cd03804 240 AGPNVTFLGR-VSDEELRDLYARA----RAFLFPAEEDFGIVPVEAMA 282 (351) T ss_pred cCCCEEEecC-CCHHHHHHHHHhC----CEEEECCcCCCCchHHHHHH Confidence 6789999995 8999999999864 99999986699999999975 No 67 >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Probab=99.68 E-value=5.3e-15 Score=156.98 Aligned_cols=260 Identities=13% Similarity=0.110 Sum_probs=163.8 Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCc--cccc Q 005625 300 DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEK--GILR 377 (687) Q Consensus 300 dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~--~~~~ 377 (687) .+||...++.+++++|.+ +|| +|.|+|..... ..+.+ ...++++.++|+.... +..+ T Consensus 8 ~~gG~~~~~~~la~~l~~--------~G~----ev~v~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 66 (350) T cd03785 8 GTGGHIFPALALAEELRE--------RGA----EVLFLGTKRGL--------EARLV-PKAGIPLHTIPVGGLRRKGSLK 66 (350) T ss_pred CchhhhhHHHHHHHHHHh--------CCC----EEEEEECCCcc--------hhhcc-cccCCceEEEEecCcCCCChHH Confidence 578999999999999888 899 99999874211 11111 1136788888875321 1110 Q ss_pred cccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcc Q 005625 378 QWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDE 457 (687) Q Consensus 378 ~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~ 457 (687) .+. ..|..+. ....+.+.+ + +.+||+||+|....++.+.++++..++|+++..|+... . T Consensus 67 ~~~---~~~~~~~-~~~~~~~~i-~--~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~------~-------- 125 (350) T cd03785 67 KLK---APFKLLK-GVLQARKIL-K--KFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVP------G-------- 125 (350) T ss_pred HHH---HHHHHHH-HHHHHHHHH-H--hcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCc------c-------- Confidence 000 0111111 111222223 3 36899999998777888888899999999876554210 0 Q ss_pred cccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCC Q 005625 458 KYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS 537 (687) Q Consensus 458 ~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~ 537 (687) + .+++.++.+|.|+++|..+.. + + ...|+.+|+||+|.+.|.+.. T Consensus 126 ---~-----~~~~~~~~~~~vi~~s~~~~~--------~--~-----------------~~~~~~~i~n~v~~~~~~~~~ 170 (350) T cd03785 126 ---L-----ANRLLARFADRVALSFPETAK--------Y--F-----------------PKDKAVVTGNPVREEILALDR 170 (350) T ss_pred ---H-----HHHHHHHhhCEEEEcchhhhh--------c--C-----------------CCCcEEEECCCCchHHhhhhh Confidence 0 123456779999998876532 1 0 124899999999987665422 Q ss_pred hHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHH-HHHHHhhccccCCCceEEEEEccCCCC Q 005625 538 EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTG-LVECYGKNSQLRELVNLVVVAGYIDVN 616 (687) Q Consensus 538 ~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~-LVeAfa~l~~l~~~~nLVLVGG~~d~~ 616 (687) . | . .+..++++++|+++|+....||... +++|+..+.. ++..++++.|..+ T Consensus 171 ~---~-----~----------------~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~~~~i~G~g~-- 222 (350) T cd03785 171 E---R-----A----------------RLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQVIHQTGKGD-- 222 (350) T ss_pred h---H-----H----------------hcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeEEEEEcCCcc-- Confidence 1 1 1 1123567788999998888888765 4588877652 3455554444311 Q ss_pred CCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 617 KSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 617 ~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) .+++.+.++++ .++|+|+|+ + +++.++|+.| |+||.+| | |++++||.+ T Consensus 223 ----------~~~l~~~~~~~--~~~v~~~g~-~--~~~~~~l~~a----d~~v~~s--g-~~t~~Eam~ 270 (350) T cd03785 223 ----------LEEVKKAYEEL--GVNYEVFPF-I--DDMAAAYAAA----DLVISRA--G-ASTVAELAA 270 (350) T ss_pred ----------HHHHHHHHhcc--CCCeEEeeh-h--hhHHHHHHhc----CEEEECC--C-HhHHHHHHH Confidence 13445566665 578999996 4 6889999864 9999765 3 578888864 No 68 >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Probab=99.68 E-value=3.9e-15 Score=159.55 Aligned_cols=267 Identities=12% Similarity=0.095 Sum_probs=164.6 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) |||++++- .+||.+....+++++|.+ +|| +|.++|... ... ....+. T Consensus 2 ~~i~i~~~-------------g~gG~~~~~~~la~~L~~--------~g~----ev~vv~~~~-~~~----~~~~~~--- 48 (357) T PRK00726 2 KKILLAGG-------------GTGGHVFPALALAEELKK--------RGW----EVLYLGTAR-GME----ARLVPK--- 48 (357) T ss_pred cEEEEEcC-------------cchHhhhHHHHHHHHHHh--------CCC----EEEEEECCC-chh----hhcccc--- Confidence 78888863 257888877888888877 899 999998632 110 011111 Q ss_pred CCCeEEEEecCCCCccccccccccc-cchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEe Q 005625 359 TEHTHILRVPFRSEKGILRQWISRF-DVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 437 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~-~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~ 437 (687) .++++++++.....+- ...++. ..+.++..+ ..+. .+++ +.+||+||+|.+..++.+.++++..++|+|++. T Consensus 49 -~g~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~~~-~~ik--~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 121 (357) T PRK00726 49 -AGIEFHFIPSGGLRRK--GSLANLKAPFKLLKGV-LQAR-KILK--RFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHE 121 (357) T ss_pred -CCCcEEEEeccCcCCC--ChHHHHHHHHHHHHHH-HHHH-HHHH--hcCCCEEEECCCcchhHHHHHHHHcCCCEEEEc Confidence 3778888886432100 000000 011111111 1222 2223 368999999998778888888999999999887 Q ss_pred cCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccC Q 005625 438 HALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 517 (687) Q Consensus 438 HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~ 517 (687) |.... . ..+++.++.+|.+++++.+... + +. T Consensus 122 ~~~~~------~----------------~~~r~~~~~~d~ii~~~~~~~~-------~--------------------~~ 152 (357) T PRK00726 122 QNAVP------G----------------LANKLLARFAKKVATAFPGAFP-------E--------------------FF 152 (357) T ss_pred CCCCc------c----------------HHHHHHHHHhchheECchhhhh-------c--------------------cC Confidence 74210 0 0134567789999988764321 0 01 Q ss_pred CCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHH-HHHhh Q 005625 518 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLV-ECYGK 596 (687) Q Consensus 518 ~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LV-eAfa~ 596 (687) ..|+.+||||||.+.|.+.... . .+..+++.++|+++|+..+.|++..++ +|+.+ T Consensus 153 ~~~i~vi~n~v~~~~~~~~~~~--------~----------------~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~ 208 (357) T PRK00726 153 KPKAVVTGNPVREEILALAAPP--------A----------------RLAGREGKPTLLVVGGSQGARVLNEAVPEALAL 208 (357) T ss_pred CCCEEEECCCCChHhhcccchh--------h----------------hccCCCCCeEEEEECCcHhHHHHHHHHHHHHHH Confidence 2499999999997765542210 0 011245678899999999999876665 99887 Q ss_pred ccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCC Q 005625 597 NSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHP 676 (687) Q Consensus 597 l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~g 676 (687) +... ...++++|++ . . +.+.+.++ +++. |.|+|+ + ++++++|..+ |+||.+| | T Consensus 209 ~~~~--~~~~~~~G~g-~--------~----~~~~~~~~-~~~~--v~~~g~-~--~~~~~~~~~~----d~~i~~~--g 261 (357) T PRK00726 209 LPEA--LQVIHQTGKG-D--------L----EEVRAAYA-AGIN--AEVVPF-I--DDMAAAYAAA----DLVICRA--G 261 (357) T ss_pred hhhC--cEEEEEcCCC-c--------H----HHHHHHhh-cCCc--EEEeeh-H--hhHHHHHHhC----CEEEECC--C Confidence 6532 2234444432 1 1 22333445 7775 999996 4 5788999864 9999866 2 Q ss_pred CchhhhcccC Q 005625 677 IPLNFLPSYK 686 (687) Q Consensus 677 FGLviLEa~~ 686 (687) +.+++||.+ T Consensus 262 -~~~~~Ea~~ 270 (357) T PRK00726 262 -ASTVAELAA 270 (357) T ss_pred -HHHHHHHHH Confidence 577778754 No 69 >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra Probab=99.65 E-value=7e-15 Score=157.35 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=137.9 Q ss_pred CCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCC-chhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 406 GFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDS-DIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 406 ~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s-~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) .++|+||+|....... .++......+.|.+.|+......... ...|.. .+. .....++.+|.||++|.. T Consensus 98 ~~~diii~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~d~ii~~s~~ 167 (372) T cd04949 98 TKPDVFILDRPTLDGQ-ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLINN---FYE------YVFENLDKVDGVIVATEQ 167 (372) T ss_pred CCCCEEEECCccccch-hHHhccCCceEEEEEChHHhCCcccccccccch---hhH------HHHhChhhCCEEEEccHH Confidence 7899999997654333 34444556678889997543221110 011111 111 112346789999998875 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHV 564 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~ 564 (687) .... ...++ + ...++.+||||+|.+.+.+... T Consensus 168 ~~~~---l~~~~------------------~-~~~~v~~ip~g~~~~~~~~~~~-------------------------- 199 (372) T cd04949 168 QKQD---LQKQF------------------G-NYNPIYTIPVGSIDPLKLPAQF-------------------------- 199 (372) T ss_pred HHHH---HHHHh------------------C-CCCceEEEcccccChhhcccch-------------------------- Confidence 5431 00111 0 1235899999999776654320 Q ss_pred cCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEE Q 005625 565 GTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (687) Q Consensus 565 g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~ 644 (687) ...+++.|+++||+.+.||++.+++|+.++....++++|+++|.+.. . ..+..+++++++.+.|. T Consensus 200 ---~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~---------~---~~~~~~~~~~~~~~~v~ 264 (372) T cd04949 200 ---KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE---------E---EKLKELIEELGLEDYVF 264 (372) T ss_pred ---hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch---------H---HHHHHHHHHcCCcceEE Confidence 01234679999999999999999999999877677899999885521 1 24556778999999999 Q ss_pred EcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 645 WIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 645 flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |.|+ .+++.++|+.+ |+||+||.+ |||++++||.+ T Consensus 265 ~~g~---~~~~~~~~~~a----d~~v~~S~~Eg~~~~~lEAma 300 (372) T cd04949 265 LKGY---TRDLDEVYQKA----QLSLLTSQSEGFGLSLMEALS 300 (372) T ss_pred EcCC---CCCHHHHHhhh----hEEEecccccccChHHHHHHh Confidence 9994 35789999864 999999999 99999999975 No 70 >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3 Probab=99.63 E-value=3.8e-14 Score=150.29 Aligned_cols=255 Identities=15% Similarity=0.113 Sum_probs=154.9 Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccccc Q 005625 301 TGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWI 380 (687) Q Consensus 301 tGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~i 380 (687) +||-+....+++++|.+ +|| +|.++|+. +. .. ..+ . ...++++.+++.....+ .. T Consensus 10 ~~g~~~~~~~La~~L~~--------~g~----eV~vv~~~--~~--~~--~~~--~-~~~g~~~~~i~~~~~~~---~~- 64 (348) T TIGR01133 10 TGGHIFPALAVAEELIK--------RGV----EVLWLGTK--RG--LE--KRL--V-PKAGIEFYFIPVGGLRR---KG- 64 (348) T ss_pred cHHHHhHHHHHHHHHHh--------CCC----EEEEEeCC--Cc--ch--hcc--c-ccCCCceEEEeccCcCC---CC- Confidence 34544433577777766 899 99999863 21 10 011 0 11368888888754211 00 Q ss_pred ccccchhhH---HHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcc Q 005625 381 SRFDVWPYL---ETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDE 457 (687) Q Consensus 381 sr~~iwp~L---e~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~ 457 (687) ....+... -.....+.+.+ + +.+||+||+|....++.+.++++.+++|+|+..|... . . T Consensus 65 -~~~~l~~~~~~~~~~~~l~~~i-~--~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~----~--~-------- 126 (348) T TIGR01133 65 -SFRLIKTPLKLLKAVFQARRIL-K--KFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV----P--G-------- 126 (348) T ss_pred -hHHHHHHHHHHHHHHHHHHHHH-H--hcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC----c--c-------- Confidence 01111111 11112233333 3 4789999999877778888889999999985443210 0 0 Q ss_pred cccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCC Q 005625 458 KYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS 537 (687) Q Consensus 458 ~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~ 537 (687) ..+++..+.+|.||+.|..... + -+..+|+||+|...+.+.. T Consensus 127 --------~~~~~~~~~~d~ii~~~~~~~~--------~----------------------~~~~~i~n~v~~~~~~~~~ 168 (348) T TIGR01133 127 --------LTNKLLSRFAKKVLISFPGAKD--------H----------------------FEAVLVGNPVRQEIRSLPV 168 (348) T ss_pred --------HHHHHHHHHhCeeEECchhHhh--------c----------------------CCceEEcCCcCHHHhcccc Confidence 0134566789999998875432 2 0347999999876554321 Q ss_pred hHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHH-HHHHHhhccccCCCceEEEEEccCCCC Q 005625 538 EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTG-LVECYGKNSQLRELVNLVVVAGYIDVN 616 (687) Q Consensus 538 ~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~-LVeAfa~l~~l~~~~nLVLVGG~~d~~ 616 (687) . + .+ +..++++++|+++||....|++.. +++|+.++.. ++.++++++|+. T Consensus 169 ~---~-----~~----------------~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~~--- 219 (348) T TIGR01133 169 P---R-----ER----------------FGLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGKN--- 219 (348) T ss_pred h---h-----hh----------------cCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCcc--- Confidence 1 1 10 123456789999999988999765 5588877653 245565555542 Q ss_pred CCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 617 KSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 617 ~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) + .+++++.++++++.+.|.|+. + ++.++|..+ |+||.+| | |.+++||.+ T Consensus 220 -----~----~~~l~~~~~~~~l~~~v~~~~----~-~~~~~l~~a----d~~v~~~--g-~~~l~Ea~~ 268 (348) T TIGR01133 220 -----D----LEKVKNVYQELGIEAIVTFID----E-NMAAAYAAA----DLVISRA--G-ASTVAELAA 268 (348) T ss_pred -----h----HHHHHHHHhhCCceEEecCcc----c-CHHHHHHhC----CEEEECC--C-hhHHHHHHH Confidence 1 135667788888877766662 2 688999864 9999865 4 688889864 No 71 >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. Probab=99.63 E-value=3e-15 Score=167.85 Aligned_cols=236 Identities=16% Similarity=0.094 Sum_probs=141.4 Q ss_pred CCceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 406 GFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 406 ~~PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) ...|+||.|...--+++.++.++ .+.|+++..|.-. +.+.+ |..+ .++ ..-...|-.||.|...|.. T Consensus 130 ~~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~Hipf----P~~e~-~~~l------p~~-~~ll~~~l~~D~igF~t~~ 197 (460) T cd03788 130 RPGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPF----PSSEI-FRCL------PWR-EELLRGLLGADLIGFQTER 197 (460) T ss_pred CCCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCC----CChHH-HhhC------CCh-HHHHHHHhcCCEEEECCHH Confidence 35799999988777777776554 4689999999642 22111 2211 111 0113567789999887754 Q ss_pred HHhccccccccccccccccccccc----eeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLY----RVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQN 560 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Ly----rvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~ 560 (687) -.. .+-+.+. .+-+.. ..+.- .....++.|||||||++.|.+...... .+..++++. T Consensus 198 ~~~-------~Fl~~~~-~~l~~~~~~~~~i~~-~g~~~~i~vip~GID~~~f~~~~~~~~----~~~~~~~~~------ 258 (460) T cd03788 198 YAR-------NFLSCCS-RLLGLEVTDDGGVEY-GGRRVRVGAFPIGIDPDAFRKLAASPE----VQERAAELR------ 258 (460) T ss_pred HHH-------HHHHHHH-HHcCCcccCCceEEE-CCEEEEEEEEeCeEcHHHHHHHhcCch----hHHHHHHHH------ Confidence 322 1110000 000000 00000 001237999999999998875432111 011111111 Q ss_pred cccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCC----ceEEEEEccCCCCCCCChHHHHHHHHHHHHHHH Q 005625 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLREL----VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT 636 (687) Q Consensus 561 ~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~----~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~e 636 (687) + ..+++++|+++|||++.||++.+++||.++.+..++ +.|+++|++.. ....+.....+++.+++++ T Consensus 259 ----~--~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~---g~~~~~~~l~~~l~~~v~~ 329 (460) T cd03788 259 ----E--RLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSR---TDVPEYQELRREVEELVGR 329 (460) T ss_pred ----H--hcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCC---cCcHHHHHHHHHHHHHHHH Confidence 1 235788999999999999999999999987654443 56777775321 0112222334455666665 Q ss_pred cCCC------CcEEE-cCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 637 YKLD------GQFRW-IAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 637 lgL~------~~V~f-lG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) .+.. ..|++ .| .++++++.++|+.| |+||+||.+ |||++++||.+ T Consensus 330 in~~~g~~~~~~v~~~~g-~v~~~el~~~y~~a----Dv~v~pS~~Eg~~lv~lEAma 382 (460) T cd03788 330 INGKFGTLDWTPVRYLYR-SLPREELAALYRAA----DVALVTPLRDGMNLVAKEYVA 382 (460) T ss_pred HHhccCCCCceeEEEEeC-CCCHHHHHHHHHhc----cEEEeCccccccCcccceeEE Confidence 4431 23554 56 58999999999965 999999999 99999999975 No 72 >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Probab=99.56 E-value=2.6e-13 Score=149.47 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=126.2 Q ss_pred CCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHH Q 005625 406 GFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQE 485 (687) Q Consensus 406 ~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qE 485 (687) .+||+||++.++........+++.|+|++++.|.+.... ...|..+ . ...+..++.+|.|++.|... T Consensus 123 ~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~~~s----~~~~~~~-------~--~~~r~~~~~~d~ii~~S~~~ 189 (425) T PRK05749 123 WRPKLVIIMETELWPNLIAELKRRGIPLVLANARLSERS----FKRYQKF-------K--RFYRLLFKNIDLVLAQSEED 189 (425) T ss_pred hCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCChhh----HHHHHHH-------H--HHHHHHHHhCCEEEECCHHH Confidence 689999988443222223346788999998877553211 1111111 1 12356788999999998765 Q ss_pred HhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccccc Q 005625 486 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG 565 (687) Q Consensus 486 i~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g 565 (687) .. .+..+ ++... +.|++|+ +.+.+.+......+ ..+++ . T Consensus 190 ~~-------~l~~~---------------g~~~~-i~vi~n~-~~d~~~~~~~~~~~-----~~~r~------------~ 228 (425) T PRK05749 190 AE-------RFLAL---------------GAKNE-VTVTGNL-KFDIEVPPELAARA-----ATLRR------------Q 228 (425) T ss_pred HH-------HHHHc---------------CCCCC-cEecccc-cccCCCChhhHHHH-----HHHHH------------H Confidence 43 12211 22223 7788774 43333322111111 11111 1 Q ss_pred CCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEE Q 005625 566 TLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW 645 (687) Q Consensus 566 ~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~f 645 (687) + . +++++++++|+. .|+.+.|++|+.++.+..++++|+|+|+++ ++ .+++.++++++|+.. +.| T Consensus 229 ~-~-~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~---------~r--~~~l~~~~~~~gl~~-~~~ 292 (425) T PRK05749 229 L-A-PNRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHP---------ER--FKEVEELLKKAGLSY-VRR 292 (425) T ss_pred h-c-CCCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCCh---------hh--HHHHHHHHHhCCCcE-EEc Confidence 1 1 467888888874 688999999999876556778898887542 22 245678889999863 555 Q ss_pred cCccc-----------CcccHHHHHHHhhcCCcE-EEEcCCC-CCchhhhcccC Q 005625 646 IAAQT-----------NRARNGELYRYIADTKGA-FVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 646 lG~~l-----------~~~dl~elYr~aad~~dV-FVlPSl~-gFGLviLEa~~ 686 (687) .|... ...+++.+|+.+ |+ ||.||+. +||++++||.+ T Consensus 293 ~~~~~~~~~~~v~l~~~~~el~~~y~~a----Di~~v~~S~~e~~g~~~lEAma 342 (425) T PRK05749 293 SQGEPPSADTDVLLGDTMGELGLLYAIA----DIAFVGGSLVKRGGHNPLEPAA 342 (425) T ss_pred cCCCCCCCCCcEEEEecHHHHHHHHHhC----CEEEECCCcCCCCCCCHHHHHH Confidence 44211 135799999865 89 5557888 99999999964 No 73 >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib Probab=99.55 E-value=6.1e-14 Score=157.33 Aligned_cols=236 Identities=17% Similarity=0.174 Sum_probs=138.4 Q ss_pred CceEEEeCCCChhHHHHHHHHcC-CCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHH Q 005625 407 FPDFIIGNYSDGNLVASLLAYKM-GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQE 485 (687) Q Consensus 407 ~PDLIH~Hys~aglvA~llAr~l-gVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qE 485 (687) .-|+|..|...--+++.++.++. ..++.+..|.- ++.+++ |..+ .... .-..+|-.||.|.-.|+.. T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHip----fP~~e~-f~~l----p~r~---~il~gll~~dligF~t~~~ 194 (456) T TIGR02400 127 PGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIP----FPSSEI-YRTL----PWRR---ELLEGLLAYDLVGFQTYDD 194 (456) T ss_pred CCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCC----CCChHH-HhhC----CcHH---HHHHHHhcCCEEEECCHHH Confidence 45899999888888888887664 45777888843 222221 1111 1111 1256899999999888766 Q ss_pred HhccccccccccccccccccccceeecccccC-CC-cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccc Q 005625 486 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF-DP-KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 486 i~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~-~p-K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) ... +.+.+...+ ++-..-.++... .. ++.++|||||++.|.+.......... ..++++ T Consensus 195 ~~~-------Fl~~~~~~l-~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~-~~~lr~----------- 254 (456) T TIGR02400 195 ARN-------FLSAVSREL-GLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKR-IAELRE----------- 254 (456) T ss_pred HHH-------HHHHHHHHh-CCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHH-HHHHHH----------- Confidence 541 221111000 000000001111 22 89999999999998754321110000 011221 Q ss_pred ccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCC----ceEEEEEccCCCCCCCChHHH-HHHHHHHHHHHHcC Q 005625 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLREL----VNLVVVAGYIDVNKSKDREEI-AEIEKMHELMKTYK 638 (687) Q Consensus 564 ~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~----~nLVLVGG~~d~~~s~d~ee~-~el~~L~~li~elg 638 (687) .+ +++++|++||||++.||+..+++||.++.+..+. +.|+++|+... . ++++. ...+++++++.+.+ T Consensus 255 -~~---~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~r---g-~~~~~~~l~~~i~~lv~~in 326 (456) T TIGR02400 255 -SL---KGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSR---G-DVPEYQQLRRQVEELVGRIN 326 (456) T ss_pred -Hc---CCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCc---c-CchHHHHHHHHHHHHHHHHH Confidence 11 3678999999999999999999999987544433 45777764321 1 12222 22223333332221 Q ss_pred -CCCc-----EEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 639 -LDGQ-----FRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 639 -L~~~-----V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ..+. |++++..++++++.++|+.| |+||+||++ |||+|++||.+ T Consensus 327 ~~~~~~~~~pv~~l~~~~~~~el~aly~aa----Dv~vv~S~~EG~~Lv~lEamA 377 (456) T TIGR02400 327 GRFGTLDWTPIRYLNRSYDREELMALYRAA----DVGLVTPLRDGMNLVAKEYVA 377 (456) T ss_pred hccCCCCCccEEEEcCCCCHHHHHHHHHhC----cEEEECccccccCccHHHHHH Confidence 1111 44544358899999999964 999999999 99999999864 No 74 >PRK13609 diacylglycerol glucosyltransferase; Provisional Probab=99.54 E-value=1.4e-13 Score=149.21 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=115.7 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) ..+||+||+++...++.....++..++|++++.++....+ .+..+.+|.++++|.. T Consensus 102 ~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~~~------------------------~~~~~~ad~i~~~s~~ 157 (380) T PRK13609 102 AEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCLHK------------------------IWVHREVDRYFVATDH 157 (380) T ss_pred HhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCCCc------------------------ccccCCCCEEEECCHH Confidence 3789999999776655444555667899887666532111 1234578999998864 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHV 564 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~ 564 (687) ... .+..+ ++...|+.++++.++. .|.+...... ++. T Consensus 158 ~~~-------~l~~~---------------gi~~~ki~v~G~p~~~-~f~~~~~~~~----~~~---------------- 194 (380) T PRK13609 158 VKK-------VLVDI---------------GVPPEQVVETGIPIRS-SFELKINPDI----IYN---------------- 194 (380) T ss_pred HHH-------HHHHc---------------CCChhHEEEECcccCh-HHcCcCCHHH----HHH---------------- Confidence 432 12111 2223377777555442 2322211110 111 Q ss_pred cCCCCCCCCEEE-EEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcE Q 005625 565 GTLSDRSKPIVF-SMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 643 (687) Q Consensus 565 g~l~~~~kPiIl-~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V 643 (687) .+..++++++++ +.|++...||+..+++++.+. ++.+++++||.. ++. .+++++++++++ ++| T Consensus 195 ~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~~----~~~~~viv~G~~-------~~~---~~~l~~~~~~~~--~~v 258 (380) T PRK13609 195 KYQLCPNKKILLIMAGAHGVLGNVKELCQSLMSV----PDLQVVVVCGKN-------EAL---KQSLEDLQETNP--DAL 258 (380) T ss_pred HcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhhC----CCcEEEEEeCCC-------HHH---HHHHHHHHhcCC--CcE Confidence 122345666554 558888899999999998642 457888777641 222 245566676665 789 Q ss_pred EEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 644 RWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 644 ~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) +|+|+ + +++.++|+.+ |+||. .+.|++++||.+ T Consensus 259 ~~~g~-~--~~~~~l~~~a----D~~v~---~~gg~t~~EA~a 291 (380) T PRK13609 259 KVFGY-V--ENIDELFRVT----SCMIT---KPGGITLSEAAA 291 (380) T ss_pred EEEec-h--hhHHHHHHhc----cEEEe---CCCchHHHHHHH Confidence 99996 4 3688898854 89883 255999999864 No 75 >PHA01630 putative group 1 glycosyl transferase Probab=99.53 E-value=5e-14 Score=151.82 Aligned_cols=178 Identities=7% Similarity=0.000 Sum_probs=117.5 Q ss_pred eCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHH-HhcCCEEEecCHHHHhcccc Q 005625 413 GNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIA-MNNADFIITSTYQEIAGTKN 491 (687) Q Consensus 413 ~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~ia-m~~AD~IItsS~qEi~~~~~ 491 (687) .|+.-+...+.-...+.|+|+|+|+|+... +. . ..+... .+.||.|||+|...... T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~v~e~~~~~~-------l~-----------~--~~~~~~~~~~ad~ii~~S~~~~~~--- 108 (331) T PHA01630 52 YYTIFNSMLFWKGIPHVGKNIVFEVADTDA-------IS-----------H--TALYFFRNQPVDEIVVPSQWSKNA--- 108 (331) T ss_pred ehhhhhHHHHHhhccccCCceEEEEEeech-------hh-----------H--HHHHHHhhccCCEEEECCHHHHHH--- Confidence 343333333333345679999999998211 11 0 123344 67899999999765431 Q ss_pred ccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCC Q 005625 492 TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRS 571 (687) Q Consensus 492 ~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~ 571 (687) +..+ |++. ..++.|||||||.+.|.|.... ..+ T Consensus 109 ----l~~~-------------g~~~-~~~i~vIpNGVd~~~f~~~~~~-----------------------------~~~ 141 (331) T PHA01630 109 ----FYTS-------------GLKI-PQPIYVIPHNLNPRMFEYKPKE-----------------------------KPH 141 (331) T ss_pred ----HHHc-------------CCCC-CCCEEEECCCCCHHHcCCCccc-----------------------------cCC Confidence 1110 1111 2389999999998877653210 113 Q ss_pred CCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccC Q 005625 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 651 (687) Q Consensus 572 kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~ 651 (687) +.+++++||+.++||++.|++|++++....++..++++|++.. + .++ .++.+ +.| .++ T Consensus 142 ~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~--------~----~~l------~~~~~---~~~-~v~ 199 (331) T PHA01630 142 PCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML--------D----PRL------FGLNG---VKT-PLP 199 (331) T ss_pred CEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc--------c----hhh------ccccc---eec-cCC Confidence 3466677899999999999999998876556788888874321 0 011 13333 355 378 Q ss_pred cccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 652 RARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 652 ~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++++.++|+.+ |+||+||.+ +||++++||.+ T Consensus 200 ~~~l~~~y~~a----Dv~v~pS~~E~fgl~~lEAMA 231 (331) T PHA01630 200 DDDIYSLFAGC----DILFYPVRGGAFEIPVIEALA 231 (331) T ss_pred HHHHHHHHHhC----CEEEECCccccCChHHHHHHH Confidence 89999999864 999999999 99999999975 No 76 >PHA01633 putative glycosyl transferase group 1 Probab=99.50 E-value=2.4e-13 Score=146.88 Aligned_cols=123 Identities=11% Similarity=0.073 Sum_probs=88.2 Q ss_pred eEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccC Q 005625 522 NIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR 601 (687) Q Consensus 522 ~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~ 601 (687) .+|++|||.+.|.|......+ ++.+. + ...++.++|+++||++++||++.|++|+.++.+.. T Consensus 116 i~I~~GVD~~~f~p~~~~~~~---~r~~~--------------~-~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~ 177 (335) T PHA01633 116 LPVFHGINFKIVENAEKLVPQ---LKQKL--------------D-KDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKY 177 (335) T ss_pred eeeeCCCChhhcCccchhhHH---HHHHh--------------C-cCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhC Confidence 357899999998875421110 11111 1 01246678999999999999999999999876543 Q ss_pred CC----ceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCc--ccCcccHHHHHHHhhcCCcEEEEcCCC Q 005625 602 EL----VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA--QTNRARNGELYRYIADTKGAFVQVYVH 675 (687) Q Consensus 602 ~~----~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~--~l~~~dl~elYr~aad~~dVFVlPSl~ 675 (687) ++ .+++++|++ ..+++++.++|+|+|+ .++++++.++|+.+ |+||+||.+ T Consensus 178 p~~~~~i~l~ivG~~--------------------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~a----DifV~PS~~ 233 (335) T PHA01633 178 PDIAKKIHFFVISHK--------------------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAM----DFTIVPSGT 233 (335) T ss_pred CCccccEEEEEEcHH--------------------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhC----CEEEECCcc Confidence 32 356555321 1345788999999952 35678899999864 999999999 Q ss_pred -CCchhhhcccC Q 005625 676 -PIPLNFLPSYK 686 (687) Q Consensus 676 -gFGLviLEa~~ 686 (687) |||++++||.+ T Consensus 234 EgfGlvlLEAMA 245 (335) T PHA01633 234 EGFGMPVLESMA 245 (335) T ss_pred ccCCHHHHHHHH Confidence 99999999975 No 77 >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Probab=99.39 E-value=3.8e-12 Score=151.47 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=135.3 Q ss_pred ceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHH Q 005625 408 PDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 486 (687) Q Consensus 408 PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi 486 (687) =|+|-.|...--+++.++.++ -++++.+..|.-. |.+.++ ..+ ..+ ..-..+|-.||.|-.-|+.-. T Consensus 148 ~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPF----Ps~e~f-r~l------p~r-~~il~gll~aDligF~t~~y~ 215 (797) T PLN03063 148 GDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPF----PSSEIY-KTL------PSR-SELLRAVLTADLIGFHTYDFA 215 (797) T ss_pred CCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCC----CCHHHH-hhC------CCH-HHHHHHHhcCCEEEeCCHHHH Confidence 389999988777788877654 5678888888642 222211 111 111 112467889999888775443 Q ss_pred hccccccccccccccccccccceeecccccC--CCcceEeeCCCCCCCCCCCChHH-HhhhhhhhhhhhhhcCCCccccc Q 005625 487 AGTKNTVGQYESHTAFTLPGLYRVVHGIDVF--DPKFNIVSPGADMDIYFPYSEKQ-KRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 487 ~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~--~pK~~VIpnGVD~~~F~p~~~~~-~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) . .+.+.+.-.| ++-....++... ..++.++|+|||++.|.+..... .+. ...++++ T Consensus 216 r-------~Fl~~~~r~l-~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~--~~~~lr~----------- 274 (797) T PLN03063 216 R-------HFLSACTRIL-GVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQ--HMKELKR----------- 274 (797) T ss_pred H-------HHHHHHHHHh-CccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHH--HHHHHHH----------- Confidence 2 1111000000 000000011111 12799999999998886532211 110 0011221 Q ss_pred ccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCc----eEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcC- Q 005625 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELV----NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK- 638 (687) Q Consensus 564 ~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~----nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elg- 638 (687) . ..++++|++||||++.||+..+++||.++.+..+.. -|+.+++... .++++ .+++++.+++++ T Consensus 275 --~--~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr----~~~~~---y~~l~~~v~~l~g 343 (797) T PLN03063 275 --F--FAGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTR----NDVPE---YQKLKSQVHELVG 343 (797) T ss_pred --h--cCCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCC----CchHH---HHHHHHHHHHHHH Confidence 1 135789999999999999999999999876555543 2444443211 12333 234455555553 Q ss_pred -CCCc---EEE-----cCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 639 -LDGQ---FRW-----IAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 639 -L~~~---V~f-----lG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++++ +.| ++..++.+++.++|+.| |+||.||++ |||+|++||.+ T Consensus 344 ~In~~~g~~~~~pv~~l~~~v~~~el~aly~~A----DvfvvtSlrEGmnLv~lEamA 397 (797) T PLN03063 344 RINGRFGSVSSVPIHHLDCSVDFNYLCALYAIT----DVMLVTSLRDGMNLVSYEFVA 397 (797) T ss_pred HhhcccccCCCceeEEecCCCCHHHHHHHHHhC----CEEEeCccccccCcchhhHhe Confidence 3332 333 33247889999999964 999999999 99999999864 No 78 >PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A. Probab=99.38 E-value=1.9e-12 Score=119.89 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=85.9 Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccc Q 005625 302 GGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWIS 381 (687) Q Consensus 302 GGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~is 381 (687) ||..+|+.+++++|.+ +|| +|.|+|...++. .+ +.. ..++.+.++|+....... T Consensus 1 GG~~~~~~~l~~~L~~--------~G~----~V~v~~~~~~~~------~~-~~~--~~~~~~~~~~~~~~~~~~----- 54 (160) T PF13579_consen 1 GGIERYVRELARALAA--------RGH----EVTVVTPQPDPE------DD-EEE--EDGVRVHRLPLPRRPWPL----- 54 (160) T ss_dssp SHHHHHHHHHHHHHHH--------TT-----EEEEEEE---GG------G--SEE--ETTEEEEEE--S-SSSGG----- T ss_pred CCHHHHHHHHHHHHHH--------CCC----EEEEEecCCCCc------cc-ccc--cCCceEEeccCCccchhh----- Confidence 8999999999999988 899 999999753222 11 111 247999999987652110 Q ss_pred cccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccc Q 005625 382 RFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHF 461 (687) Q Consensus 382 r~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~ 461 (687) ..+. +...+.+.+ .....+||+||+|++.+++++.++++..++|+|+|.|+...... ..|.. .+ T Consensus 55 --~~~~----~~~~~~~~l-~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~~~~-----~~ 118 (160) T PF13579_consen 55 --RLLR----FLRRLRRLL-AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLFRRG----SRWKR-----RL 118 (160) T ss_dssp --GHCC----HHHHHHHHC-HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T----------HHH-----HH T ss_pred --hhHH----HHHHHHHHH-hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECCCchhhc----cchhh-----HH Confidence 0111 111222222 22357999999999877888888877889999999998542211 11211 11 Q ss_pred cchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCC Q 005625 462 SCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG 527 (687) Q Consensus 462 s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnG 527 (687) .. ..+...++.||.|++.|..... .+..+ ++...|+.||||| T Consensus 119 ~~--~~~~~~~~~ad~vi~~S~~~~~-------~l~~~---------------g~~~~ri~vipnG 160 (160) T PF13579_consen 119 YR--WLERRLLRRADRVIVVSEAMRR-------YLRRY---------------GVPPDRIHVIPNG 160 (160) T ss_dssp HH--HHHHHHHHH-SEEEESSHHHHH-------HHHHH------------------GGGEEE---- T ss_pred HH--HHHHHHHhcCCEEEECCHHHHH-------HHHHh---------------CCCCCcEEEeCcC Confidence 11 2467889999999999976543 12211 2223499999998 No 79 >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Probab=99.36 E-value=7.8e-11 Score=114.44 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=72.5 Q ss_pred EEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHH Q 005625 577 SMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNG 656 (687) Q Consensus 577 ~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~ 656 (687) ++||+.+.||++.+++|+..+....++.+++++|++.+ .. .....+.+++..++|.++|...+.++.. T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~------~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (229) T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPE------RE------YLEELLAALLLLDRVIFLGGLDPEELLA 176 (229) T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC------hH------HHHHHHHhcCCcccEEEeCCCCcHHHHH Confidence 89999999999999999998876666889999986532 11 1223367788899999999522444555 Q ss_pred HHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 657 ELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 657 elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) .+++ .+|+++.||.. +||.+++||.+ T Consensus 177 ~~~~----~~di~l~~~~~e~~~~~~~Eam~ 203 (229) T cd01635 177 LLLA----AADVFVLPSLREGFGLVVLEAMA 203 (229) T ss_pred HHhh----cCCEEEecccccCcChHHHHHHh Confidence 5554 24999999999 99999999975 No 80 >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional Probab=99.35 E-value=9.4e-12 Score=147.09 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=137.3 Q ss_pred CceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHH Q 005625 407 FPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQE 485 (687) Q Consensus 407 ~PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qE 485 (687) .-|+|-.|...--+++..+.++ -+.+..+..|... |.+.+. ..+ ..+ ..-..+|-.||.|---|..- T Consensus 133 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pf----P~~~~f-~~l------p~~-~~ll~~ll~~Dligf~t~~~ 200 (726) T PRK14501 133 PGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPF----PSFEVF-RLL------PWR-EEILEGLLGADLIGFHTYDY 200 (726) T ss_pred CCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCC----CChHHH-hhC------CCh-HHHHHHHhcCCeEEeCCHHH Confidence 3489999988877888888655 3567777888652 222211 111 111 11246788999988776543 Q ss_pred Hhccccccccccccccccc--cccceeecccccCC-C-cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCccc Q 005625 486 IAGTKNTVGQYESHTAFTL--PGLYRVVHGIDVFD-P-KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQND 561 (687) Q Consensus 486 i~~~~~~v~qyes~~~f~l--p~Lyrvv~gi~v~~-p-K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~ 561 (687) .. .+-+.+.-.+ +.-.. ++.... . ++.++|+|||++.|.+...... .+...+++. T Consensus 201 ~r-------~Fl~~~~~~l~~~~~~~---~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~----~~~~~~~lr------- 259 (726) T PRK14501 201 VR-------HFLSSVLRVLGYETELG---EIRLGGRIVRVDAFPMGIDYDKFHNSAQDPE----VQEEIRRLR------- 259 (726) T ss_pred HH-------HHHHHHHHHcCCccCCC---eEEECCEEEEEEEEECeEcHHHHHHHhcCch----HHHHHHHHH------- Confidence 22 1110000000 00000 001111 2 7999999999999875432111 001111110 Q ss_pred ccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCC----CceEEEEEccCCCCCCCCh-HH-HHHHHHHHHHHH Q 005625 562 EHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRE----LVNLVVVAGYIDVNKSKDR-EE-IAEIEKMHELMK 635 (687) Q Consensus 562 ~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~----~~nLVLVGG~~d~~~s~d~-ee-~~el~~L~~li~ 635 (687) . ..+++++|++||||++.||+..+++||.++.+..+ ++.|++||++.. ++ ++ .+..+++.+++. T Consensus 260 ---~--~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr-----~~~~~~~~l~~~~~~~v~ 329 (726) T PRK14501 260 ---Q--DLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSR-----TGVPQYQEMKREIDELVG 329 (726) T ss_pred ---H--HcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCC-----cchHHHHHHHHHHHHHHH Confidence 0 12467899999999999999999999998754444 367888874311 11 21 222233444444 Q ss_pred HcC-C------CCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 636 TYK-L------DGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 636 elg-L------~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +.+ . ..-+.|.| .++++++.++|+.| |+||+||++ |||++++||.+ T Consensus 330 ~in~~~~~~~~~pv~~~~~-~~~~~~l~~ly~~a----Dv~v~~S~~EG~~lv~~Eama 383 (726) T PRK14501 330 RINGEFGTVDWTPIHYFYR-SLPFEELVALYRAA----DVALVTPLRDGMNLVAKEYVA 383 (726) T ss_pred HHHhhcCCCCcceEEEEeC-CCCHHHHHHHHHhc----cEEEecccccccCcccceEEE Confidence 432 1 12345667 48999999999965 999999999 99999999864 No 81 >PLN02605 monogalactosyldiacylglycerol synthase Probab=99.33 E-value=3e-11 Score=131.83 Aligned_cols=193 Identities=10% Similarity=0.033 Sum_probs=117.4 Q ss_pred CCCceEEEeCCC-ChhHHHHHHHH-----cCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEE Q 005625 405 QGFPDFIIGNYS-DGNLVASLLAY-----KMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFI 478 (687) Q Consensus 405 ~~~PDLIH~Hys-~aglvA~llAr-----~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~I 478 (687) +.+||+||+++. ..+..+.++++ ..++|++++++++.... .. +..+.+|.+ T Consensus 98 ~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~-----~~------------------w~~~~~d~~ 154 (382) T PLN02605 98 KYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCH-----PT------------------WFHKGVTRC 154 (382) T ss_pred hcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcC-----cc------------------cccCCCCEE Confidence 368999999753 33222233332 35899988876542110 01 124578999 Q ss_pred EecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCC Q 005625 479 ITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPE 558 (687) Q Consensus 479 ItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~ 558 (687) +++|..... ....+ ++...|+.++++++|.+.+.+..... ++++ T Consensus 155 ~~~s~~~~~-------~l~~~---------------g~~~~ki~v~g~~v~~~f~~~~~~~~--------~~r~------ 198 (382) T PLN02605 155 FCPSEEVAK-------RALKR---------------GLEPSQIRVYGLPIRPSFARAVRPKD--------ELRR------ 198 (382) T ss_pred EECCHHHHH-------HHHHc---------------CCCHHHEEEECcccCHhhccCCCCHH--------HHHH------ Confidence 998865432 11110 22234899999999865443322111 1111 Q ss_pred cccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc----cCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHH Q 005625 559 QNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ----LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELM 634 (687) Q Consensus 559 ~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~----l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li 634 (687) .+..++++|+|+++||....|++..+++++..... ..++.++++++|.. .+.+ +++.+. T Consensus 199 ------~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~-------~~~~---~~L~~~- 261 (382) T PLN02605 199 ------ELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN-------KKLQ---SKLESR- 261 (382) T ss_pred ------HcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC-------HHHH---HHHHhh- Confidence 12346788999999999999999999999975421 12345555555531 1222 233222 Q ss_pred HHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 635 KTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 635 ~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) ....+|+|+|+ + ++++++|+.+ |+||.+| .|++++||.+ T Consensus 262 ---~~~~~v~~~G~-~--~~~~~l~~aa----Dv~V~~~---g~~ti~EAma 300 (382) T PLN02605 262 ---DWKIPVKVRGF-V--TNMEEWMGAC----DCIITKA---GPGTIAEALI 300 (382) T ss_pred ---cccCCeEEEec-c--ccHHHHHHhC----CEEEECC---CcchHHHHHH Confidence 33467999996 5 4799999854 9999765 3789999864 No 82 >PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A. Probab=99.31 E-value=1.9e-11 Score=114.97 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=82.2 Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccc Q 005625 298 LPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILR 377 (687) Q Consensus 298 ~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~ 377 (687) .+..||.++|+.+++++|.+ +|| +|.|+|....+.. .+.. .......+.... T Consensus 8 ~~~~GG~e~~~~~l~~~l~~--------~G~----~v~v~~~~~~~~~-------~~~~----~~~~~~~~~~~~----- 59 (177) T PF13439_consen 8 LPNIGGAERVVLNLARALAK--------RGH----EVTVVSPGVKDPI-------EEEL----VKIFVKIPYPIR----- 59 (177) T ss_dssp TTSSSHHHHHHHHHHHHHHH--------TT-----EEEEEESS-TTS--------SSTE----EEE---TT-SST----- T ss_pred CCCCChHHHHHHHHHHHHHH--------CCC----EEEEEEcCCCccc-------hhhc----cceeeeeecccc----- Confidence 36789999999999999988 899 9999986533321 0000 011111111111 Q ss_pred cccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccc-cCCCCchhhhhhc Q 005625 378 QWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKT-KYPDSDIYWKKFD 456 (687) Q Consensus 378 ~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~-ky~~s~l~w~~~~ 456 (687) . . ..+...+...+.+.+.+ .+|||||+|.+.....+.+..+ ++|.|.|.|+.... ...... .|. .. T Consensus 60 -~----~-~~~~~~~~~~~~~~i~~---~~~DiVh~~~~~~~~~~~~~~~--~~~~v~~~H~~~~~~~~~~~~-~~~-~~ 126 (177) T PF13439_consen 60 -K----R-FLRSFFFMRRLRRLIKK---EKPDIVHIHGPPAFWIALLACR--KVPIVYTIHGPYFERRFLKSK-LSP-YS 126 (177) T ss_dssp -S----S---HHHHHHHHHHHHHHH---HT-SEEECCTTHCCCHHHHHHH--CSCEEEEE-HHH--HHTTTTS-CCC-HH T ss_pred -c----c-cchhHHHHHHHHHHHHH---cCCCeEEecccchhHHHHHhcc--CCCEEEEeCCCcccccccccc-cch-hh Confidence 0 0 00111122233344433 4899999998654444444444 99999999987521 000000 000 00 Q ss_pred ccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCC Q 005625 457 EKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYF 534 (687) Q Consensus 457 ~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~ 534 (687) .+ ..+ .+....+.+|.|||+|...... +.++ ++...|+.|||||||.+.|. T Consensus 127 -~~--~~~--~~~~~~~~~~~ii~vS~~~~~~----l~~~------------------~~~~~ki~vI~ngid~~~F~ 177 (177) T PF13439_consen 127 -YL--NFR--IERKLYKKADRIIAVSESTKDE----LIKF------------------GIPPEKIHVIYNGIDTDRFR 177 (177) T ss_dssp -HH--HHC--TTHHHHCCSSEEEESSHHHHHH----HHHH------------------T--SS-EEE----B-CCCH- T ss_pred -hh--hhh--hhhhHHhcCCEEEEECHHHHHH----HHHh------------------CCcccCCEEEECCccHHHcC Confidence 00 000 1234478999999998654431 1112 22234999999999999873 No 83 >TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. Probab=99.31 E-value=6.4e-11 Score=136.93 Aligned_cols=258 Identities=11% Similarity=0.062 Sum_probs=150.2 Q ss_pred HhcCCCceEEEeCCCChhHHHHHHHHc--------------CCCcEEEEecCCcccc---CCC-------------Cchh Q 005625 402 AELQGFPDFIIGNYSDGNLVASLLAYK--------------MGITQCTIAHALEKTK---YPD-------------SDIY 451 (687) Q Consensus 402 ~~~~~~PDLIH~Hys~aglvA~llAr~--------------lgVP~V~T~HaL~~~k---y~~-------------s~l~ 451 (687) +.++.+||+||+|.|.++++...+.+. .+.++|+|.|++...- ++. .++. T Consensus 156 ~~l~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~ 235 (601) T TIGR02094 156 RALGIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLP 235 (601) T ss_pred HHcCCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCC Confidence 445679999999999999888775321 1466899999874322 221 1222 Q ss_pred hhhhccc-ccc---cchhHHHHHHHhcCCEEEecCH--HHHhccccccccccccccccccccceeecccccCCCcceEee Q 005625 452 WKKFDEK-YHF---SCQFTADLIAMNNADFIITSTY--QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVS 525 (687) Q Consensus 452 w~~~~~~-y~~---s~rf~aE~iam~~AD~IItsS~--qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIp 525 (687) |..+... ..+ ..++.+-..++..||.|.|+|. .++. +...+. ++...+ .-..++.=|- T Consensus 236 ~~~~~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~--~~l~~~-----------l~~~~~---~~~~~i~gIt 299 (601) T TIGR02094 236 REQLLALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVS--RKMWQF-----------LYPGYE---EEEVPIGYVT 299 (601) T ss_pred HHHHHhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHH--HHHHHh-----------hhhhcc---cccCCcccee Confidence 2211100 000 1234556789999999999985 2221 011111 111000 0012588888 Q ss_pred CCCCCCCCCCCChHHH----------------------------hhhhhhhhhhhhhc--------------CC-Ccccc Q 005625 526 PGADMDIYFPYSEKQK----------------------------RLTALHGSIEQLLF--------------DP-EQNDE 562 (687) Q Consensus 526 nGVD~~~F~p~~~~~~----------------------------r~~~l~~~i~~ll~--------------~~-~~~~~ 562 (687) ||||...|.|.+.+.- ++.+.+.+.++.|. |. +.... T Consensus 300 NGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~ 379 (601) T TIGR02094 300 NGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILM 379 (601) T ss_pred CCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhh Confidence 9999998876542211 00001111111110 00 00000 Q ss_pred cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccC----CCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcC Q 005625 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK 638 (687) Q Consensus 563 ~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~----~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elg 638 (687) ..+...+++.|+|.+++||+..||.+.+++++.++.++. ..+++|+.| ..++ .|..-++.++.+.+++++.. T Consensus 380 ~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~G-ka~p---~d~~gk~~i~~i~~la~~~~ 455 (601) T TIGR02094 380 ATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAG-KAHP---ADGEGKEIIQRIVEFSKRPE 455 (601) T ss_pred hhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEE-ecCc---ccchHHHHHHHHHHHHhccc Confidence 123335788999999999999999999999988775421 346777665 3222 23444556777888888766 Q ss_pred CCCcEEEc-CcccCcccHHHHHHHhhcCCcEEEE-cCC-C-CCchhhhccc Q 005625 639 LDGQFRWI-AAQTNRARNGELYRYIADTKGAFVQ-VYV-H-PIPLNFLPSY 685 (687) Q Consensus 639 L~~~V~fl-G~~l~~~dl~elYr~aad~~dVFVl-PSl-~-gFGLviLEa~ 685 (687) ..++|.|+ || + ..+.++ +.+++|+|.+ ||. + ++|++-+.|. T Consensus 456 ~~~kv~f~~~Y--d-~~lA~~---i~aG~Dv~L~~Psr~~EacGtsqMka~ 500 (601) T TIGR02094 456 FRGRIVFLENY--D-INLARY---LVSGVDVWLNNPRRPLEASGTSGMKAA 500 (601) T ss_pred CCCCEEEEcCC--C-HHHHHH---HhhhheeEEeCCCCCcCCchHHHHHHH Confidence 78899995 55 3 223332 2234599999 999 8 9999887664 No 84 >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st Probab=99.19 E-value=1.7e-10 Score=123.31 Aligned_cols=201 Identities=13% Similarity=0.067 Sum_probs=122.0 Q ss_pred CCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 406 GFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 406 ~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) .+||+||+|.. ...+.+.++|+.+|+|++++.|+... +.. ...|.. .+ ....+.||.++++|.. T Consensus 87 ~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s--~~~-~~~~~~----~r--------~~~~~~ad~~~~~s~~ 151 (363) T cd03786 87 EKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRS--FDR-GMPDEE----NR--------HAIDKLSDLHFAPTEE 151 (363) T ss_pred hCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEeccccc--CCC-CCCchH----HH--------HHHHHHhhhccCCCHH Confidence 58999999964 45677888999999999988876421 100 111111 00 1235678999998865 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCC-CCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGV-D~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) ... .+..+ ++...|+.+|+|++ |...+.+.... . ...++ T Consensus 152 ~~~-------~l~~~---------------G~~~~kI~vign~v~d~~~~~~~~~~-~------~~~~~----------- 191 (363) T cd03786 152 ARR-------NLLQE---------------GEPPERIFVVGNTMIDALLRLLELAK-K------ELILE----------- 191 (363) T ss_pred HHH-------HHHHc---------------CCCcccEEEECchHHHHHHHHHHhhc-c------chhhh----------- Confidence 543 12111 22234899999985 53322211110 0 00000 Q ss_pred ccCCCCCCCCEEEEEecCCc---CCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC- Q 005625 564 VGTLSDRSKPIVFSMARLDH---VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL- 639 (687) Q Consensus 564 ~g~l~~~~kPiIl~VGRLdp---~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL- 639 (687) .++.++++.+++++||+.. .||++.|++|+.++.. + ++.+++.+.+ ..+ +++.+.++++++ T Consensus 192 -~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~--~--~~~vi~~~~~-------~~~---~~l~~~~~~~~~~ 256 (363) T cd03786 192 -LLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAE--E--DVPVVFPNHP-------RTR---PRIREAGLEFLGH 256 (363) T ss_pred -hcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHh--c--CCEEEEECCC-------ChH---HHHHHHHHhhccC Confidence 1122333446778899875 7999999999987643 1 3444442211 111 355667788887 Q ss_pred CCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhccc Q 005625 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSY 685 (687) Q Consensus 640 ~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~ 685 (687) .++|+|+|+ .+.++++.+|+.| |+||.||- |+ ..||. T Consensus 257 ~~~v~~~~~-~~~~~~~~l~~~a----d~~v~~Sg---gi-~~Ea~ 293 (363) T cd03786 257 HPNVLLISP-LGYLYFLLLLKNA----DLVLTDSG---GI-QEEAS 293 (363) T ss_pred CCCEEEECC-cCHHHHHHHHHcC----cEEEEcCc---cH-Hhhhh Confidence 788999995 6678899988854 99999994 43 46664 No 85 >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center Probab=99.16 E-value=3.6e-09 Score=115.14 Aligned_cols=196 Identities=9% Similarity=0.015 Sum_probs=124.4 Q ss_pred cCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCH Q 005625 404 LQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTY 483 (687) Q Consensus 404 ~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~ 483 (687) ++.+.+++.++...... +++...+.++|+-+|+.... ... .. . .....|...++.||.|||+|. T Consensus 99 ~~~~~~i~~~~~P~~~~---~~~~~~~~~~Vyd~~D~~~~-~~~--~~--~--------~~~~~e~~~~~~ad~vi~~S~ 162 (373) T cd04950 99 LGFGRPILWYYTPYTLP---VAALLQASLVVYDCVDDLSA-FPG--GP--P--------ELLEAERRLLKRADLVFTTSP 162 (373) T ss_pred cCCCCcEEEEeCccHHH---HHhhcCCCeEEEEcccchhc-cCC--CC--H--------HHHHHHHHHHHhCCEEEECCH Confidence 35666777776444333 33336778888888864221 111 00 0 001357888999999999886 Q ss_pred HHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccc Q 005625 484 QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 484 qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) .-.. .+.. ..+++.+||||||.+.|.+......+ .+. T Consensus 163 ~l~~-------~~~~------------------~~~~i~~i~ngvd~~~f~~~~~~~~~-------~~~----------- 199 (373) T cd04950 163 SLYE-------AKRR------------------LNPNVVLVPNGVDYEHFAAARDPPPP-------PAD----------- 199 (373) T ss_pred HHHH-------HHhh------------------CCCCEEEcccccCHHHhhcccccCCC-------hhH----------- Confidence 5432 1111 12589999999999888664321100 000 Q ss_pred ccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcE Q 005625 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 643 (687) Q Consensus 564 ~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V 643 (687) ....++|+|+|+|++.+.++++.|.++.. ..++.+++++|++.. ..+ ...+ .-.++| T Consensus 200 ---~~~~~~~~i~y~G~l~~~~d~~ll~~la~----~~p~~~~vliG~~~~------~~~---~~~~-------~~~~nV 256 (373) T cd04950 200 ---LAALPRPVIGYYGAIAEWLDLELLEALAK----ARPDWSFVLIGPVDV------SID---PSAL-------LRLPNV 256 (373) T ss_pred ---HhcCCCCEEEEEeccccccCHHHHHHHHH----HCCCCEEEEECCCcC------ccC---hhHh-------ccCCCE Confidence 12346789999999999888876654433 246789999985411 011 1111 114689 Q ss_pred EEcCcccCcccHHHHHHHhhcCCcEEEEcCCC------CCchhhhcccC Q 005625 644 RWIAAQTNRARNGELYRYIADTKGAFVQVYVH------PIPLNFLPSYK 686 (687) Q Consensus 644 ~flG~~l~~~dl~elYr~aad~~dVFVlPSl~------gFGLviLEa~~ 686 (687) +|+|+ ++.++++.+|+.+ |++++|+.. ++|+.++|+.+ T Consensus 257 ~~~G~-~~~~~l~~~l~~~----Dv~l~P~~~~~~~~~~~P~Kl~EylA 300 (373) T cd04950 257 HYLGP-KPYKELPAYLAGF----DVAILPFRLNELTRATSPLKLFEYLA 300 (373) T ss_pred EEeCC-CCHHHHHHHHHhC----CEEecCCccchhhhcCCcchHHHHhc Confidence 99995 8999999999864 999999862 67899999875 No 86 >PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A .... Probab=99.13 E-value=2e-10 Score=118.93 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=98.1 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcc-cccccccc- Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTC-NQRLERVS- 357 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~-~q~lE~i~- 357 (687) ||+++|+.- -..-.+||....+..|++||++ +|| +|.|++........... ...+..+. T Consensus 1 kIl~vt~E~-------~P~~k~GGLgdv~~~L~kaL~~--------~G~----~V~Vi~P~y~~~~~~~~~~~~~~~~~~ 61 (245) T PF08323_consen 1 KILMVTSEY-------APFAKVGGLGDVVGSLPKALAK--------QGH----DVRVIMPKYGFIDEEYFQLEPVRRLSV 61 (245) T ss_dssp EEEEE-S-B-------TTTB-SSHHHHHHHHHHHHHHH--------TT-----EEEEEEE-THHHHHHCTTEEEEEEES- T ss_pred CEEEEEccc-------CcccccCcHhHHHHHHHHHHHh--------cCC----eEEEEEccchhhhhhhhcceEEEEecc Confidence 799999883 1124899999999999999988 899 99999876522110000 00000000 Q ss_pred ---C----------------CCCeEEEEecCCCCccccccccccccch-------hh-HHHHH--HHHHHHHHHhcCCCc Q 005625 358 ---G----------------TEHTHILRVPFRSEKGILRQWISRFDVW-------PY-LETFT--EDVGSEITAELQGFP 408 (687) Q Consensus 358 ---~----------------~~~v~IlRvP~~~~~~~~~~~isr~~iw-------p~-Le~f~--~~~~~~L~~~~~~~P 408 (687) + ..++.++-+... .+..|..+| +. .++|+ ..+..++.+.++.+| T Consensus 62 ~~~~~v~~~~~~~~~v~~~~~~~v~v~~i~~~-------~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~p 134 (245) T PF08323_consen 62 PFGGPVPVGVWYEVRVYRYPVDGVPVYFIDNP-------EYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKP 134 (245) T ss_dssp STTCEEEEE----EEEEEEEETTEEEEEEESH-------HHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S- T ss_pred ccccccccccceEEEEEEEEcCCccEEEecCh-------hhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCC Confidence 0 013333333221 122233344 21 23332 122223334345799 Q ss_pred eEEEeCCCChhHHHHHHHHcC-------CCcEEEEecCCccccC------CCCchhhhhh--cccccccchhHHHHHHHh Q 005625 409 DFIIGNYSDGNLVASLLAYKM-------GITQCTIAHALEKTKY------PDSDIYWKKF--DEKYHFSCQFTADLIAMN 473 (687) Q Consensus 409 DLIH~Hys~aglvA~llAr~l-------gVP~V~T~HaL~~~ky------~~s~l~w~~~--~~~y~~s~rf~aE~iam~ 473 (687) ||||+|.|.+++++.+++... ++|+|+|+|+++.... ...++.|..+ ...+.+...+...+.++. T Consensus 135 DIIH~hDW~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in~lk~gi~ 214 (245) T PF08323_consen 135 DIIHCHDWHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQINFLKAGIV 214 (245) T ss_dssp SEEEEECGGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEEHHHHHHH T ss_pred CEEEecCchHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccCHHHHHHH Confidence 999999999999999998876 6999999999854321 1122333221 112333344556679999 Q ss_pred cCCEEEecCH Q 005625 474 NADFIITSTY 483 (687) Q Consensus 474 ~AD~IItsS~ 483 (687) .||.|+|+|. T Consensus 215 ~AD~v~TVS~ 224 (245) T PF08323_consen 215 YADKVTTVSP 224 (245) T ss_dssp HSSEEEESSH T ss_pred hcCEeeeCCH Confidence 9999999985 No 87 >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. Probab=99.12 E-value=1.8e-09 Score=122.09 Aligned_cols=233 Identities=11% Similarity=0.042 Sum_probs=141.0 Q ss_pred CceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHH Q 005625 407 FPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQE 485 (687) Q Consensus 407 ~PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qE 485 (687) .=|+|-.|...--+++..+.++ .+.++-+-.|.- +|.+.+ |..+ ..+ ..-..+|-.||.|=--|... T Consensus 132 ~~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiP----FPs~ei-fr~L------P~r-~~ll~glL~aDliGFqt~~y 199 (487) T TIGR02398 132 EGATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTP----FPSADV-FNIL------PWR-EQIIGSLLCCDYIGFHIPRY 199 (487) T ss_pred CCCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCC----CCChHH-HhhC------Cch-HHHHHHHhcCCeEEeCCHHH Confidence 3489999988877888888664 345566666753 222111 1111 000 11246778888877665433 Q ss_pred Hhccccccccccccccccccccc---ee------------------ecccccCCC--cceEeeCCCCCCCCCCCCh---H Q 005625 486 IAGTKNTVGQYESHTAFTLPGLY---RV------------------VHGIDVFDP--KFNIVSPGADMDIYFPYSE---K 539 (687) Q Consensus 486 i~~~~~~v~qyes~~~f~lp~Ly---rv------------------v~gi~v~~p--K~~VIpnGVD~~~F~p~~~---~ 539 (687) .. .+-+.+ -.+-++- ++ -.++..... ++.++|.|||++.|.+... . T Consensus 200 ~~-------~Fl~~~-~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~ 271 (487) T TIGR02398 200 VE-------NFVDAA-RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASI 271 (487) T ss_pred HH-------HHHHHH-HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchH Confidence 32 111100 0000000 00 000111112 6899999999998864321 1 Q ss_pred HHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCC----CceEEEEEccCCC Q 005625 540 QKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRE----LVNLVVVAGYIDV 615 (687) Q Consensus 540 ~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~----~~nLVLVGG~~d~ 615 (687) ..+. .++++. + .++++|++++|||+.||+...++||.++.+.++ ++.|+.||.... T Consensus 272 ~~~~----~~lr~~------------~---~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr- 331 (487) T TIGR02398 272 REMM----ERIRSE------------L---AGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAA- 331 (487) T ss_pred HHHH----HHHHHH------------c---CCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCc- Confidence 1111 123221 1 257899999999999999999999998755444 467888875422 Q ss_pred CCCCChHHHHHHHHHHHHHHHc-------CCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 616 NKSKDREEIAEIEKMHELMKTY-------KLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 616 ~~s~d~ee~~el~~L~~li~el-------gL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) +...+..+..+++++++.+. +...-+.+.| .++.+++..+|+.| |||+.+|++ ||+||..|+.. T Consensus 332 --~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~-~v~~~el~alYr~A----DV~lvT~lrDGmNLVa~Eyva 403 (487) T TIGR02398 332 --SGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTR-SLPYEEVSAWFAMA----DVMWITPLRDGLNLVAKEYVA 403 (487) T ss_pred --ccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcC-CCCHHHHHHHHHhC----CEEEECccccccCcchhhHHh Confidence 11223333445566666664 5566678889 49999999999965 999999999 99999999753 No 88 >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. Probab=99.11 E-value=8.4e-10 Score=119.23 Aligned_cols=203 Identities=12% Similarity=-0.010 Sum_probs=119.1 Q ss_pred CCceEEEeCC-CChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 406 GFPDFIIGNY-SDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 406 ~~PDLIH~Hy-s~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) .+||+||+|. +..++.|+++|+.+|+|++++.+++- +...... |.+. ..| ...-+.||.++++|.. T Consensus 85 ~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~-s~~~~~~--~~~~------~~r----~~~~~~ad~~~~~s~~ 151 (365) T TIGR00236 85 EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLR-TGDRYSP--MPEE------INR----QLTGHIADLHFAPTEQ 151 (365) T ss_pred cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCC-cCCCCCC--CccH------HHH----HHHHHHHHhccCCCHH Confidence 6899999995 56778899999999999998877651 1000000 1110 000 1122358999998865 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCC-CCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGV-D~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) ... .... .++...|+.+++||+ |.. +.+..... + ..+.+ T Consensus 152 ~~~-------~l~~---------------~G~~~~~I~vign~~~d~~-~~~~~~~~-~-----~~~~~----------- 191 (365) T TIGR00236 152 AKD-------NLLR---------------ENVKADSIFVTGNTVIDAL-LTNVEIAY-S-----SPVLS----------- 191 (365) T ss_pred HHH-------HHHH---------------cCCCcccEEEeCChHHHHH-HHHHhhcc-c-----hhHHH----------- Confidence 432 1111 022234899999997 432 21111000 0 11111 Q ss_pred ccCCCCCCCCEEEEEe-cC-CcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCC Q 005625 564 VGTLSDRSKPIVFSMA-RL-DHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG 641 (687) Q Consensus 564 ~g~l~~~~kPiIl~VG-RL-dp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~ 641 (687) .+ . .+++++++++ |. ...||+..|++|+.++....++.++++++++ + ...+ + .+.+.++..+ T Consensus 192 -~~-~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~-~------~~~~---~---~~~~~~~~~~ 255 (365) T TIGR00236 192 -EF-G-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHL-N------PVVR---E---PLHKHLGDSK 255 (365) T ss_pred -hc-C-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCC-C------hHHH---H---HHHHHhCCCC Confidence 11 1 2345666655 54 3469999999999887654556777776543 1 1111 1 2344456778 Q ss_pred cEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 642 QFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 642 ~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) +|+|+| .++..+...+|+.+ |++|.|| |.+++||.+ T Consensus 256 ~v~~~~-~~~~~~~~~~l~~a----d~vv~~S----g~~~~EA~a 291 (365) T TIGR00236 256 RVHLIE-PLEYLDFLNLAANS----HLILTDS----GGVQEEAPS 291 (365) T ss_pred CEEEEC-CCChHHHHHHHHhC----CEEEECC----hhHHHHHHH Confidence 999999 47777777777654 8999887 445677753 No 89 >PRK13608 diacylglycerol glucosyltransferase; Provisional Probab=99.09 E-value=1.5e-09 Score=119.30 Aligned_cols=189 Identities=11% Similarity=0.120 Sum_probs=111.9 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) ..+||+||+++...++.....++.+++|+++..++... . ..| ..+.+|.++++|.. T Consensus 102 ~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~~----~--~~w------------------~~~~~d~~~v~s~~ 157 (391) T PRK13608 102 KEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRL----H--KNW------------------ITPYSTRYYVATKE 157 (391) T ss_pred HhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCCc----c--ccc------------------ccCCCCEEEECCHH Confidence 37999999986554433333345679998654333210 0 011 23568999998865 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHV 564 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~ 564 (687) ... .+..+ | +...|+.|+.++|+.. |.+...... .++ T Consensus 158 ~~~-------~l~~~-------------g--i~~~ki~v~GiPv~~~-f~~~~~~~~--------~~~------------ 194 (391) T PRK13608 158 TKQ-------DFIDV-------------G--IDPSTVKVTGIPIDNK-FETPIDQKQ--------WLI------------ 194 (391) T ss_pred HHH-------HHHHc-------------C--CCHHHEEEECeecChH-hcccccHHH--------HHH------------ Confidence 443 12111 2 2123888887777643 332111111 111 Q ss_pred cCCCCCCCCE-EEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcE Q 005625 565 GTLSDRSKPI-VFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 643 (687) Q Consensus 565 g~l~~~~kPi-Il~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V 643 (687) .+..++++++ +++.||+...||+..+++++.+ ..++.++++++|+. .+. .++ +.+.++..++| T Consensus 195 ~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~---~~~~~~~vvv~G~~-------~~l---~~~---l~~~~~~~~~v 258 (391) T PRK13608 195 DNNLDPDKQTILMSAGAFGVSKGFDTMITDILA---KSANAQVVMICGKS-------KEL---KRS---LTAKFKSNENV 258 (391) T ss_pred HcCCCCCCCEEEEECCCcccchhHHHHHHHHHh---cCCCceEEEEcCCC-------HHH---HHH---HHHHhccCCCe Confidence 1223455665 4568899999999999998642 22457787776641 111 122 33445556789 Q ss_pred EEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 644 RWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 644 ~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) .++|+ + ++++++|+.+ |+||.. +.|+|++||.+ T Consensus 259 ~~~G~-~--~~~~~~~~~a----Dl~I~k---~gg~tl~EA~a 291 (391) T PRK13608 259 LILGY-T--KHMNEWMASS----QLMITK---PGGITISEGLA 291 (391) T ss_pred EEEec-c--chHHHHHHhh----hEEEeC---CchHHHHHHHH Confidence 99996 4 5789999865 999852 46899999864 No 90 >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... Probab=99.07 E-value=2.7e-10 Score=109.02 Aligned_cols=102 Identities=21% Similarity=0.292 Sum_probs=83.6 Q ss_pred CCCCCCEEEEEecCCcCCCHHHHHHHHhhcccc-CCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEc Q 005625 568 SDRSKPIVFSMARLDHVKNMTGLVECYGKNSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (687) Q Consensus 568 ~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l-~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~fl 646 (687) ...++++|+++||+.+.||++.|++|+..+... .+...++++|.+ . ....+...++.+++.++|+|+ T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~-~-----------~~~~~~~~~~~~~~~~~i~~~ 78 (172) T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG-E-----------YKKELKNLIEKLNLKENIIFL 78 (172) T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC-C-----------HHHHHHHHHHHTTCGTTEEEE T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc-c-----------ccccccccccccccccccccc Confidence 456788999999999999999999999988653 567888888722 1 224567889999999999999 Q ss_pred CcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 647 AAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 647 G~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |. .+.+++.++|+.+ |++|+||.+ +||++++||.+ T Consensus 79 ~~-~~~~~l~~~~~~~----di~v~~s~~e~~~~~~~Ea~~ 114 (172) T PF00534_consen 79 GY-VPDDELDELYKSS----DIFVSPSRNEGFGLSLLEAMA 114 (172) T ss_dssp ES-HSHHHHHHHHHHT----SEEEE-BSSBSS-HHHHHHHH T ss_pred cc-ccccccccccccc----eeccccccccccccccccccc Confidence 95 6788999999974 999999999 99999999974 No 91 >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. Probab=99.00 E-value=1.4e-08 Score=120.23 Aligned_cols=257 Identities=12% Similarity=0.135 Sum_probs=149.5 Q ss_pred HhcCCCceEEEeCCCChhHHHH-----HHHHc----------CCCcEEEEecCCccc---cCCC-------------Cch Q 005625 402 AELQGFPDFIIGNYSDGNLVAS-----LLAYK----------MGITQCTIAHALEKT---KYPD-------------SDI 450 (687) Q Consensus 402 ~~~~~~PDLIH~Hys~aglvA~-----llAr~----------lgVP~V~T~HaL~~~---ky~~-------------s~l 450 (687) +.++.+||+||+|.|.+++++. ++... .+...|+|.|++... +++. .++ T Consensus 243 r~lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl 322 (778) T cd04299 243 RALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGL 322 (778) T ss_pred HHhCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCC Confidence 4456789999999999999888 55432 145689999987432 2211 122 Q ss_pred hhhhhcccc-cc----cchhHHHHHHHhcCCEEEecCHH--HHhccccccccccccccccccccceeecccccCCCcceE Q 005625 451 YWKKFDEKY-HF----SCQFTADLIAMNNADFIITSTYQ--EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNI 523 (687) Q Consensus 451 ~w~~~~~~y-~~----s~rf~aE~iam~~AD~IItsS~q--Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~V 523 (687) .|..+.... .+ ..+|.+-..+++.|+.|.|+|.- ++. ++.... ++. |.+...-++.- T Consensus 323 ~~~~~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vs--r~mf~~-----------~~~---g~p~~~~~i~~ 386 (778) T cd04299 323 SRDRFLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVS--REMFAG-----------LWP---GFPVEEVPIGH 386 (778) T ss_pred CHHHHhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHH--HHHhhh-----------hhc---cCCcccCceec Confidence 232221110 01 12355567899999999999852 222 111111 111 11111126888 Q ss_pred eeCCCCCCCCC-CCChHH---------------------------HhhhhhhhhhhhhhcCC-------------Ccccc Q 005625 524 VSPGADMDIYF-PYSEKQ---------------------------KRLTALHGSIEQLLFDP-------------EQNDE 562 (687) Q Consensus 524 IpnGVD~~~F~-p~~~~~---------------------------~r~~~l~~~i~~ll~~~-------------~~~~~ 562 (687) |-||||...|. |...+- ..+.+.+.+.++.|... ....+ T Consensus 387 ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~ 466 (778) T cd04299 387 VTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEE 466 (778) T ss_pred eeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhh Confidence 88999988887 421110 00011111111111000 00000 Q ss_pred --cccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccC----CCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHH Q 005625 563 --HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT 636 (687) Q Consensus 563 --~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~----~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~e 636 (687) ..+...+|+.++|.++.|+...|+.+.+++.+.++.++- ..+++|+.| ... +.|.+-+..++.+.+++++ T Consensus 467 ~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaG-KAh---P~d~~gK~iIk~i~~~a~~ 542 (778) T cd04299 467 IGEADDVLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAG-KAH---PADEPGKELIQEIVEFSRR 542 (778) T ss_pred hhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEE-ecC---ccchHHHHHHHHHHHHHhC Confidence 012235678899999999999999999999987775422 246676655 322 2345556678888888987 Q ss_pred cCCCCcEEEc-CcccCcccHHHHHHHhhcCCcEEEEcCC--C-CCchhhhcc Q 005625 637 YKLDGQFRWI-AAQTNRARNGELYRYIADTKGAFVQVYV--H-PIPLNFLPS 684 (687) Q Consensus 637 lgL~~~V~fl-G~~l~~~dl~elYr~aad~~dVFVlPSl--~-gFGLviLEa 684 (687) ....++|.|+ ++ + ..+... +..++||+.+||+ + ++|.+-+.| T Consensus 543 p~~~~kVvfle~Y--d-~~lA~~---LvaG~DvwLn~prrp~EAsGTSgMKA 588 (778) T cd04299 543 PEFRGRIVFLEDY--D-MALARH---LVQGVDVWLNTPRRPLEASGTSGMKA 588 (778) T ss_pred cCCCCcEEEEcCC--C-HHHHHH---HHhhhhhcccCCCCCCCCCccchHHH Confidence 7888899996 54 3 223322 2234599999999 7 999887655 No 92 >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Probab=98.95 E-value=1.9e-08 Score=108.81 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=59.9 Q ss_pred CCCCCEEEEE-e-cCCcC-CCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHc-CCCCcEE Q 005625 569 DRSKPIVFSM-A-RLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTY-KLDGQFR 644 (687) Q Consensus 569 ~~~kPiIl~V-G-RLdp~-Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~el-gL~~~V~ 644 (687) ++++++|+.+ | |.... ++++.+++|+..+.+..++.+++++||++ +.+ +++.++++++ ++. +. T Consensus 183 ~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~--------~~~---~~~~~~~~~~~~~~--v~ 249 (380) T PRK00025 183 DPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP--------KRR---EQIEEALAEYAGLE--VT 249 (380) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh--------hhH---HHHHHHHhhcCCCC--eE Confidence 4566765543 4 66554 45789999998876555667888877632 222 3445566776 664 44 Q ss_pred EcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhccc Q 005625 645 WIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSY 685 (687) Q Consensus 645 flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~ 685 (687) +.. .+++++|+.+ |++|.|| |.+.+||. T Consensus 250 ~~~-----~~~~~~~~~a----Dl~v~~s----G~~~lEa~ 277 (380) T PRK00025 250 LLD-----GQKREAMAAA----DAALAAS----GTVTLELA 277 (380) T ss_pred EEc-----ccHHHHHHhC----CEEEECc----cHHHHHHH Confidence 432 3688999864 9999998 77777774 No 93 >TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA Probab=98.89 E-value=6.2e-08 Score=106.67 Aligned_cols=192 Identities=17% Similarity=0.095 Sum_probs=113.9 Q ss_pred CCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCH Q 005625 405 QGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTY 483 (687) Q Consensus 405 ~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~ 483 (687) ..+||+|+++.. ..++....+|+.+|+|+++-+ +-+ -+-|+.. . -+...+.+|.|++++. T Consensus 87 ~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~-------~waw~~~--~---------~r~l~~~~d~v~~~~~ 147 (385) T TIGR00215 87 QAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQ-------VWAWRKW--R---------AKKIEKATDFLLAILP 147 (385) T ss_pred hcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCc-------HhhcCcc--h---------HHHHHHHHhHhhccCC Confidence 378999999975 346656668899999987332 111 1122211 0 1244578899999886 Q ss_pred HHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCC-CChHHHhhhhhhhhhhhhhcCCCcccc Q 005625 484 QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP-YSEKQKRLTALHGSIEQLLFDPEQNDE 562 (687) Q Consensus 484 qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p-~~~~~~r~~~l~~~i~~ll~~~~~~~~ 562 (687) .|.. .|..+ ..+..+|.|++-.+.... ....+.| . T Consensus 148 ~e~~-------~~~~~------------------g~~~~~vGnPv~~~~~~~~~~~~~~r-----~-------------- 183 (385) T TIGR00215 148 FEKA-------FYQKK------------------NVPCRFVGHPLLDAIPLYKPDRKSAR-----E-------------- 183 (385) T ss_pred CcHH-------HHHhc------------------CCCEEEECCchhhhccccCCCHHHHH-----H-------------- Confidence 6543 22110 124556666663222111 1111111 1 Q ss_pred cccCCCCCCCCEEEEE--ecCCc-CCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC Q 005625 563 HVGTLSDRSKPIVFSM--ARLDH-VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (687) Q Consensus 563 ~~g~l~~~~kPiIl~V--GRLdp-~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL 639 (687) .+..++++|+|+.+ ||..+ .|++..+++|+..+....++.++++++++.. .. +.+.++.++++. T Consensus 184 --~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--------~~---~~~~~~~~~~~~ 250 (385) T TIGR00215 184 --KLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--------RR---LQFEQIKAEYGP 250 (385) T ss_pred --HcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--------hH---HHHHHHHHHhCC Confidence 12235677888776 48888 7999999999988765555666766554311 11 234455667777 Q ss_pred CCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhccc Q 005625 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSY 685 (687) Q Consensus 640 ~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~ 685 (687) ..+|.+.+. +..++|+.+ |+||.+| |.+.+||. T Consensus 251 ~~~v~~~~~-----~~~~~l~aA----Dl~V~~S----Gt~tlEa~ 283 (385) T TIGR00215 251 DLQLHLIDG-----DARKAMFAA----DAALLAS----GTAALEAA 283 (385) T ss_pred CCcEEEECc-----hHHHHHHhC----CEEeecC----CHHHHHHH Confidence 778877653 345677643 9999999 66666664 No 94 >PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Probab=98.78 E-value=2.2e-07 Score=86.24 Aligned_cols=127 Identities=18% Similarity=0.227 Sum_probs=82.5 Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccccccc Q 005625 306 VYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDV 385 (687) Q Consensus 306 vyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~i 385 (687) .++.+++++|.+ +|+ +|.|+|..... ...+ ..+++.+++++.... .. T Consensus 11 ~~~~~~~~~L~~--------~g~----~V~ii~~~~~~-------~~~~---~~~~i~~~~~~~~~k-----------~~ 57 (139) T PF13477_consen 11 TFIYNLAKELKK--------RGY----DVHIITPRNDY-------EKYE---IIEGIKVIRLPSPRK-----------SP 57 (139) T ss_pred HHHHHHHHHHHH--------CCC----EEEEEEcCCCc-------hhhh---HhCCeEEEEecCCCC-----------cc Confidence 467888887777 799 99999873111 0111 124889999975432 13 Q ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEeCCCCh-hHHHHHHHHcCC-CcEEEEecCCccccCCCCchhhhhhcccccccc Q 005625 386 WPYLETFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMG-ITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSC 463 (687) Q Consensus 386 wp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~a-glvA~llAr~lg-VP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~ 463 (687) ++++. +. .+.+.+ + +.+||+||+|+..+ +++|.++++..+ +|+|+|.|+........ .. .+. T Consensus 58 ~~~~~-~~-~l~k~i-k--~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~~~~~-~~---------~~~- 121 (139) T PF13477_consen 58 LNYIK-YF-RLRKII-K--KEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFYNSSK-KK---------KLK- 121 (139) T ss_pred HHHHH-HH-HHHHHh-c--cCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeeecCCc-hH---------HHH- Confidence 44442 22 343333 3 46899999999865 899999999999 99999999875422111 00 011 Q ss_pred hhHHHHHHHhcCCEEEecC Q 005625 464 QFTADLIAMNNADFIITST 482 (687) Q Consensus 464 rf~aE~iam~~AD~IItsS 482 (687) + ...+.+++.||.|++.| T Consensus 122 ~-~~~~~~~k~~~~ii~~~ 139 (139) T PF13477_consen 122 K-FIIKFAFKRADKIIVQS 139 (139) T ss_pred H-HHHHHHHHhCCEEEEcC Confidence 1 13567899999999864 No 95 >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Probab=98.77 E-value=1.4e-07 Score=94.63 Aligned_cols=211 Identities=20% Similarity=0.165 Sum_probs=132.2 Q ss_pred ceEEEeCCCChhH---HHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 408 PDFIIGNYSDGNL---VASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 408 PDLIH~Hys~agl---vA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) +|++|.+...... .........+.+.+...|............. .......+.. ........+.++.+++.+.. T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (381) T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLL--LLLGLLRLLL-KRLKKALRLLADRVIAVSPA 160 (381) T ss_pred cceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccch--hhHHHHHHHH-HHHHHhccccccEEEECCHH Confidence 5999998764333 4566667788999999998754322111000 0000000000 00001111246777777654 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHV 564 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~ 564 (687) ... .+..+ ....++.++|+|+|.+.+.+... T Consensus 161 ~~~-------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 191 (381) T COG0438 161 LKE-------LLEAL----------------GVPNKIVVIPNGIDTEKFAPARI-------------------------- 191 (381) T ss_pred HHH-------HHHHh----------------CCCCCceEecCCcCHHHcCcccc-------------------------- Confidence 311 01110 01237999999999887665300 Q ss_pred cCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEE Q 005625 565 GTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (687) Q Consensus 565 g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~ 644 (687) ....+..+.+++++||+.+.||+..+++++..+.......+++++|++.. . ...+..++.+++..+.|. T Consensus 192 ~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~------~-----~~~~~~~~~~~~~~~~v~ 260 (381) T COG0438 192 GLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPE------R-----REELEKLAKKLGLEDNVK 260 (381) T ss_pred CCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCc------c-----HHHHHHHHHHhCCCCcEE Confidence 00011113689999999999999999999998776544467888876532 1 123445888889899999 Q ss_pred EcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 645 WIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 645 flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) |+|+ ++.++...+|+.+ |++|+||.+ +||++++||.+ T Consensus 261 ~~g~-~~~~~~~~~~~~~----~~~v~ps~~e~~~~~~~Ea~a 298 (381) T COG0438 261 FLGY-VPDEELAELLASA----DVFVLPSLSEGFGLVLLEAMA 298 (381) T ss_pred Eecc-cCHHHHHHHHHhC----CEEEeccccccchHHHHHHHh Confidence 9995 7766777777744 899999999 99999999964 No 96 >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Probab=98.69 E-value=3.2e-07 Score=110.46 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=133.0 Q ss_pred ceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHH Q 005625 408 PDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 486 (687) Q Consensus 408 PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi 486 (687) =|+|-.|...--+++.++.++ -+.++.+..|.-. |.+.+ |..+ ..+ ..-..+|-.||.|=--|+.-. T Consensus 232 gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPF----Ps~Ei-fr~L------P~r-~elL~glL~aDlIGFqT~~y~ 299 (934) T PLN03064 232 GDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPF----PSSEI-HRTL------PSR-SELLRSVLAADLVGFHTYDYA 299 (934) T ss_pred CCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCC----CChHH-HhhC------CcH-HHHHHHHhcCCeEEeCCHHHH Confidence 389999988877888888665 4567777778642 22221 1111 111 112567889999887776543 Q ss_pred hccccccccccccccccccccceeecccccCCC--cceEeeCCCCCCCCCCCCh---HHHhhhhhhhhhhhhhcCCCccc Q 005625 487 AGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP--KFNIVSPGADMDIYFPYSE---KQKRLTALHGSIEQLLFDPEQND 561 (687) Q Consensus 487 ~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~p--K~~VIpnGVD~~~F~p~~~---~~~r~~~l~~~i~~ll~~~~~~~ 561 (687) . .+-+.+.- +-++-....+|..... ++.+.|-|||++.|..... ...+. .++++ T Consensus 300 r-------hFl~~c~r-lLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~----~~lr~--------- 358 (934) T PLN03064 300 R-------HFVSACTR-ILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHI----KELKE--------- 358 (934) T ss_pred H-------HHHHHHHH-HhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHH----HHHHH--------- Confidence 3 12111100 0011100111221122 5778899999998864221 11111 12222 Q ss_pred ccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCc--eEEEE--EccCCCCCCCChHHHHHHHHHHHHHHHc Q 005625 562 EHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELV--NLVVV--AGYIDVNKSKDREEIAEIEKMHELMKTY 637 (687) Q Consensus 562 ~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~--nLVLV--GG~~d~~~s~d~ee~~el~~L~~li~el 637 (687) .+ .++++|++|+|||+.||+...++||.++.+..+.. ++|+| + .+ ..+...+.+....++.+++.+- T Consensus 359 ---~~---~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa-~p--sr~~v~eY~~l~~~V~~~V~rI 429 (934) T PLN03064 359 ---RF---AGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIA-VP--TRTDVPEYQKLTSQVHEIVGRI 429 (934) T ss_pred ---Hh---CCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEc-CC--CCCCcHHHHHHHHHHHHHHHHH Confidence 11 25679999999999999999999999865544432 34444 2 11 1111122222223334444332 Q ss_pred C-CCCc-----EEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhccc Q 005625 638 K-LDGQ-----FRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSY 685 (687) Q Consensus 638 g-L~~~-----V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~ 685 (687) + -.+. |+++.-.++.+++..+|+.| |||+.||+. ||+++..|+. T Consensus 430 N~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~A----DV~lvTslrDGmNLva~Eyv 480 (934) T PLN03064 430 NGRFGTLTAVPIHHLDRSLDFHALCALYAVT----DVALVTSLRDGMNLVSYEFV 480 (934) T ss_pred hhhccCCCcceEEEeccCCCHHHHHHHHHhC----CEEEeCccccccCchHHHHH Confidence 2 1222 55554347899999999965 999999999 9999999974 No 97 >PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases. Probab=98.47 E-value=5e-06 Score=83.18 Aligned_cols=178 Identities=18% Similarity=0.235 Sum_probs=111.4 Q ss_pred ceEEEEccCCCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccccccc Q 005625 279 FNVVILSPHGYFGQANVLGLP-DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~P-dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~ 357 (687) -||.|+...| .| ..||-++.|-+|+..|.+ +|+ +|.|.++..... ... . T Consensus 2 kkIaIiGtrG---------IPa~YGGfET~ve~L~~~l~~--------~g~----~v~Vyc~~~~~~------~~~---~ 51 (185) T PF09314_consen 2 KKIAIIGTRG---------IPARYGGFETFVEELAPRLVS--------KGI----DVTVYCRSDYYP------YKE---F 51 (185) T ss_pred ceEEEEeCCC---------CCcccCcHHHHHHHHHHHHhc--------CCc----eEEEEEccCCCC------CCC---c Confidence 3899999886 44 489999999888877766 899 999998752111 111 1 Q ss_pred CCCCeEEEEecCCCCccccccccccccchhh-HHHHHHHHHHHHHHhcCCCceEEEeCCCC-hhHHHHHHHH--cCCCcE Q 005625 358 GTEHTHILRVPFRSEKGILRQWISRFDVWPY-LETFTEDVGSEITAELQGFPDFIIGNYSD-GNLVASLLAY--KMGITQ 433 (687) Q Consensus 358 ~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~-Le~f~~~~~~~L~~~~~~~PDLIH~Hys~-aglvA~llAr--~lgVP~ 433 (687) ...|++++.+|.....+. ....| +... ..++..+ +..+.+.|+||.+... +++++.++.. +.|.|+ T Consensus 52 ~y~gv~l~~i~~~~~g~~--------~si~yd~~sl-~~al~~~-~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v 121 (185) T PF09314_consen 52 EYNGVRLVYIPAPKNGSA--------ESIIYDFLSL-LHALRFI-KQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKV 121 (185) T ss_pred ccCCeEEEEeCCCCCCch--------HHHHHHHHHH-HHHHHHH-hhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcE Confidence 124899999987643211 11111 1101 0111111 2123468899988765 6666666654 357899 Q ss_pred EEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecc Q 005625 434 CTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHG 513 (687) Q Consensus 434 V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~g 513 (687) +++.|+++... -+|..+.+.|- + ..|+++.+.||.+|+-|. +|. .|-. T Consensus 122 ~vN~DGlEWkR-----~KW~~~~k~~l---k-~~E~~avk~ad~lIaDs~-~I~-------~y~~--------------- 169 (185) T PF09314_consen 122 VVNMDGLEWKR-----AKWGRPAKKYL---K-FSEKLAVKYADRLIADSK-GIQ-------DYIK--------------- 169 (185) T ss_pred EECCCcchhhh-----hhcCHHHHHHH---H-HHHHHHHHhCCEEEEcCH-HHH-------HHHH--------------- Confidence 99999997532 34554433321 1 368899999999999874 444 2311 Q ss_pred cccCC-CcceEeeCCCC Q 005625 514 IDVFD-PKFNIVSPGAD 529 (687) Q Consensus 514 i~v~~-pK~~VIpnGVD 529 (687) ..+. ++..+||.|+| T Consensus 170 -~~y~~~~s~~IaYGad 185 (185) T PF09314_consen 170 -ERYGRKKSTFIAYGAD 185 (185) T ss_pred -HHcCCCCcEEecCCCC Confidence 1234 68999999987 No 98 >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Probab=98.37 E-value=7.9e-06 Score=87.99 Aligned_cols=159 Identities=10% Similarity=0.055 Sum_probs=91.7 Q ss_pred CCc-eEEEeCCCCh-h--HHHHHH--HHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEE Q 005625 406 GFP-DFIIGNYSDG-N--LVASLL--AYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFII 479 (687) Q Consensus 406 ~~P-DLIH~Hys~a-g--lvA~ll--Ar~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~II 479 (687) .++ |+||.++... + +.+.++ .++.|+|+|+++|++......... + + ...|...++.||.|| T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~~---------~-~---~~~~~~~~~~aD~iI 128 (333) T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSNY---------Y-L---MKEEIDMLNLADVLI 128 (333) T ss_pred CCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhccccc---------h-h---hHHHHHHHHhCCEEE Confidence 566 9999998532 2 223222 234589999999997543211100 0 0 123677899999999 Q ss_pred ecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCc Q 005625 480 TSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQ 559 (687) Q Consensus 480 tsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~ 559 (687) |.|..... .+..+ ++...++.++++..+.....+ + . T Consensus 129 ~~S~~~~~-------~l~~~---------------g~~~~~i~~~~~~~~~~~~~~------~-----~----------- 164 (333) T PRK09814 129 VHSKKMKD-------RLVEE---------------GLTTDKIIVQGIFDYLNDIEL------V-----K----------- 164 (333) T ss_pred ECCHHHHH-------HHHHc---------------CCCcCceEecccccccccccc------c-----c----------- Confidence 99876543 11111 111236666654432210000 0 0 Q ss_pred ccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC Q 005625 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (687) Q Consensus 560 ~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL 639 (687) ....++.|+|+|||.+.++ |.+ ..++.+++|+|.+.. .+ +. T Consensus 165 --------~~~~~~~i~yaG~l~k~~~---l~~-------~~~~~~l~i~G~g~~---------~~------------~~ 205 (333) T PRK09814 165 --------TPSFQKKINFAGNLEKSPF---LKN-------WSQGIKLTVFGPNPE---------DL------------EN 205 (333) T ss_pred --------cccCCceEEEecChhhchH---HHh-------cCCCCeEEEECCCcc---------cc------------cc Confidence 0123568999999994432 211 224578888875422 10 34 Q ss_pred CCcEEEcCcccCcccHHHHHHH Q 005625 640 DGQFRWIAAQTNRARNGELYRY 661 (687) Q Consensus 640 ~~~V~flG~~l~~~dl~elYr~ 661 (687) .++|.|.|+ +++++++++|+. T Consensus 206 ~~~V~f~G~-~~~eel~~~l~~ 226 (333) T PRK09814 206 SANISYKGW-FDPEELPNELSK 226 (333) T ss_pred CCCeEEecC-CCHHHHHHHHhc Confidence 578999995 899999999874 No 99 >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Probab=98.35 E-value=1.4e-05 Score=85.72 Aligned_cols=211 Identities=16% Similarity=0.214 Sum_probs=132.0 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCcc-------c-cCCCC-chhhhhhccccc-ccchhHHHHHHHhc Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEK-------T-KYPDS-DIYWKKFDEKYH-FSCQFTADLIAMNN 474 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~-------~-ky~~s-~l~w~~~~~~y~-~s~rf~aE~iam~~ 474 (687) +..|||.+-....+ +.-...++..++|++.-+|--.- - +.+.+ -+.|.++. .|+ |++- =..+-.+ T Consensus 148 r~~Pdi~IDtMGY~-fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~Kla-Y~rlFa~l---Y~~~G~~ 222 (465) T KOG1387|consen 148 RFPPDIFIDTMGYP-FSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLA-YWRLFALL---YQSAGSK 222 (465) T ss_pred hCCchheEecCCCc-chhHHHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHH-HHHHHHHH---HHhcccc Confidence 57899988553221 11123344678999988883210 0 00112 23344432 122 2221 1356678 Q ss_pred CCEEEecCH---HHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhh Q 005625 475 ADFIITSTY---QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIE 551 (687) Q Consensus 475 AD~IItsS~---qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~ 551 (687) ||.|+|.|. .-|. |. .. .-+..||+|..|.+.. + T Consensus 223 ad~vm~NssWT~nHI~-------qi-----------W~--------~~~~~iVyPPC~~e~l-----------------k 259 (465) T KOG1387|consen 223 ADIVMTNSSWTNNHIK-------QI-----------WQ--------SNTCSIVYPPCSTEDL-----------------K 259 (465) T ss_pred ceEEEecchhhHHHHH-------HH-----------hh--------ccceeEEcCCCCHHHH-----------------H Confidence 999999642 2233 11 11 1267888886664411 1 Q ss_pred hhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhcccc------CCCceEEEEEccCCCCCCCChHHHH Q 005625 552 QLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQL------RELVNLVVVAGYIDVNKSKDREEIA 625 (687) Q Consensus 552 ~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l------~~~~nLVLVGG~~d~~~s~d~ee~~ 625 (687) .. + +. .+.+.+.++++|.+.|.||+. .++.++..... -...+|++||+-+. .+..+ T Consensus 260 s~-~---------~t-e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRn------eeD~e 321 (465) T KOG1387|consen 260 SK-F---------GT-EGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRN------EEDEE 321 (465) T ss_pred HH-h---------cc-cCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCC------hhhHH Confidence 10 0 11 234568899999999999999 55555433222 24578999997654 23344 Q ss_pred HHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 626 EIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 626 el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ..+.|++++++++++++|.|-- .+|.+++-++|.-| -+=|..-.. -||+.+.|+.+ T Consensus 322 rvk~Lkd~a~~L~i~~~v~F~~-N~Py~~lv~lL~~a----~iGvh~MwNEHFGIsVVEyMA 378 (465) T KOG1387|consen 322 RVKSLKDLAEELKIPKHVQFEK-NVPYEKLVELLGKA----TIGVHTMWNEHFGISVVEYMA 378 (465) T ss_pred HHHHHHHHHHhcCCccceEEEe-cCCHHHHHHHhccc----eeehhhhhhhhcchhHHHHHh Confidence 5789999999999999999988 68999999999865 566777777 99999999754 No 100 >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Probab=98.12 E-value=0.00095 Score=72.98 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=61.2 Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccc Q 005625 299 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 378 (687) Q Consensus 299 PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~ 378 (687) ..|||.+.-.+.+++.|.+ +|| +|.++++...- ... -+. ..+.....++.....+.. T Consensus 9 GGTGGHi~Pala~a~~l~~--------~g~----~v~~vg~~~~~------e~~--l~~-~~g~~~~~~~~~~l~~~~-- 65 (352) T PRK12446 9 GGSAGHVTPNLAIIPYLKE--------DNW----DISYIGSHQGI------EKT--IIE-KENIPYYSISSGKLRRYF-- 65 (352) T ss_pred CCcHHHHHHHHHHHHHHHh--------CCC----EEEEEECCCcc------ccc--cCc-ccCCcEEEEeccCcCCCc-- Confidence 3699998888877777765 799 99999864211 111 111 124555666543221100 Q ss_pred ccccc-cchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 379 WISRF-DVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 379 ~isr~-~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) .+..+ ..+..+..+ ..+.+ +.+ +.+||+||++....+.-+.++|+.+++|+++ T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~-i~~--~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352) T PRK12446 66 DLKNIKDPFLVMKGV-MDAYV-RIR--KLKPDVIFSKGGFVSVPVVIGGWLNRVPVLL 119 (352) T ss_pred hHHHHHHHHHHHHHH-HHHHH-HHH--hcCCCEEEecCchhhHHHHHHHHHcCCCEEE Confidence 00000 001111111 12222 223 4799999998766666678999999999865 No 101 >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. Probab=98.06 E-value=8.8e-05 Score=85.21 Aligned_cols=97 Identities=4% Similarity=0.028 Sum_probs=78.0 Q ss_pred EEEEEe--cCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCC----------- Q 005625 574 IVFSMA--RLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD----------- 640 (687) Q Consensus 574 iIl~VG--RLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~----------- 640 (687) -+.+++ || +.|.++.+|+|+.+.....+++.|.+.|-+ + .+ ...+.++++++++++. T Consensus 321 ~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~-~------~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~ 390 (519) T TIGR03713 321 TEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYN-N------DN--DITQLLEDILEQINEEYNQDKNFFSLS 390 (519) T ss_pred eEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEec-C------ch--hHHHHHHHHHHHHHhhhchhhhccccc Confidence 467778 99 999999999999998777789999887733 1 11 1234666778888777 Q ss_pred ------------------CcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcccC Q 005625 641 ------------------GQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 641 ------------------~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~~ 686 (687) ++|.|.|+ .+..++.+.|.-+ .++|.+|.. ||| +.|||.| T Consensus 391 ~~~~~~~~~~~~~~~~~~~~v~f~gy-~~e~dl~~~~~~a----rl~id~s~~eg~~-~~ieAiS 449 (519) T TIGR03713 391 EQDENQPILQTDEEQKEKERIAFTTL-TNEEDLISALDKL----RLIIDLSKEPDLY-TQISGIS 449 (519) T ss_pred hhhhhhhcccchhhcccccEEEEEec-CCHHHHHHHHhhh----eEEEECCCCCChH-HHHHHHH Confidence 89999996 5555888888865 899999999 999 9999976 No 102 >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A. Probab=97.90 E-value=9e-06 Score=74.76 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=62.7 Q ss_pred CCEEEEEecCCcCCCHHHHHH-HHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCccc Q 005625 572 KPIVFSMARLDHVKNMTGLVE-CYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 650 (687) Q Consensus 572 kPiIl~VGRLdp~Kni~~LVe-Afa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l 650 (687) .++|+++|++.+.||+..|++ |+.++.+..+++.++|+|++++ ++.++ ...+|+|.|+ + T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--------------~l~~~-----~~~~v~~~g~-~ 61 (135) T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--------------ELKRL-----RRPNVRFHGF-V 61 (135) T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---------------HHCCH-----HHCTEEEE-S-- T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--------------HHHHh-----cCCCEEEcCC-H Confidence 357999999999999999999 9998877777899998876421 12222 2459999996 5 Q ss_pred CcccHHHHHHHhhcCCcEEEEcCCC--CCchhhhcccC Q 005625 651 NRARNGELYRYIADTKGAFVQVYVH--PIPLNFLPSYK 686 (687) Q Consensus 651 ~~~dl~elYr~aad~~dVFVlPSl~--gFGLviLEa~~ 686 (687) +++.++|+. +|+.+.|+.. +++..++||.+ T Consensus 62 --~e~~~~l~~----~dv~l~p~~~~~~~~~k~~e~~~ 93 (135) T PF13692_consen 62 --EELPEILAA----ADVGLIPSRFNEGFPNKLLEAMA 93 (135) T ss_dssp --HHHHHHHHC-----SEEEE-BSS-SCC-HHHHHHHC T ss_pred --HHHHHHHHh----CCEEEEEeeCCCcCcHHHHHHHH Confidence 467777774 3999999975 89999999865 No 103 >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. Probab=97.88 E-value=0.00018 Score=82.72 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=84.4 Q ss_pred CceEEEeCCCChhHHHHHH-HHcCCCcEEEEecCCccc---------cCCC-CchhhhhhcccccccchhHHHHHHHhcC Q 005625 407 FPDFIIGNYSDGNLVASLL-AYKMGITQCTIAHALEKT---------KYPD-SDIYWKKFDEKYHFSCQFTADLIAMNNA 475 (687) Q Consensus 407 ~PDLIH~Hys~aglvA~ll-Ar~lgVP~V~T~HaL~~~---------ky~~-s~l~w~~~~~~y~~s~rf~aE~iam~~A 475 (687) ..=+.|+|-|++|.-..++ .+...|..|+|-|+.--. -|.. ....|.+....+....+...|+.+...| T Consensus 143 ~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~A 222 (633) T PF05693_consen 143 PKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYA 222 (633) T ss_dssp EEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHS T ss_pred CcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhc Confidence 3447799999888533333 233456789999986211 1211 1112333223355566677899999999 Q ss_pred CEEEecCH---HHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhh Q 005625 476 DFIITSTY---QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQ 552 (687) Q Consensus 476 D~IItsS~---qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ 552 (687) |...|+|. .|.. +. |. .+.=.|+|||+|.+.|....+-+......+++|.+ T Consensus 223 dvFTTVSeITa~Ea~-------~L----------L~---------r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~ 276 (633) T PF05693_consen 223 DVFTTVSEITAKEAE-------HL----------LK---------RKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHE 276 (633) T ss_dssp SEEEESSHHHHHHHH-------HH----------HS---------S--SEE----B-GGGTSSTTHHHHHHHHHHHHHHH T ss_pred CeeeehhhhHHHHHH-------HH----------hC---------CCCCEEcCCCccccccccchHHHHHHHHHHHHHHH Confidence 99999874 3332 11 11 12336789999987665443322211122333433 Q ss_pred hhcCCCccccc-ccC-CCCCCC-CEEEEEecCC-cCCCHHHHHHHHhhccc Q 005625 553 LLFDPEQNDEH-VGT-LSDRSK-PIVFSMARLD-HVKNMTGLVECYGKNSQ 599 (687) Q Consensus 553 ll~~~~~~~~~-~g~-l~~~~k-PiIl~VGRLd-p~Kni~~LVeAfa~l~~ 599 (687) ..- .+ .|. -.++++ -+|++.||.. ..||++.+|||++++.. T Consensus 277 fv~------~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~ 321 (633) T PF05693_consen 277 FVR------GHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNH 321 (633) T ss_dssp HHH------HHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHH T ss_pred HHH------HHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHH Confidence 210 00 111 113344 4688889998 59999999999998753 No 104 >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Probab=97.48 E-value=0.015 Score=64.16 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=129.8 Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccc Q 005625 300 DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQW 379 (687) Q Consensus 300 dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~ 379 (687) .|||.+.-.+.+++.|.+ +|++ +|.++-.. +. ..+.+....++.+.-++...... . T Consensus 9 GTGGHv~pAlAl~~~l~~--------~g~~---~v~~~~~~--~~-------~e~~l~~~~~~~~~~I~~~~~~~----~ 64 (357) T COG0707 9 GTGGHVFPALALAEELAK--------RGWE---QVIVLGTG--DG-------LEAFLVKQYGIEFELIPSGGLRR----K 64 (357) T ss_pred CCccchhHHHHHHHHHHh--------hCcc---EEEEeccc--cc-------ceeeeccccCceEEEEecccccc----c Confidence 589998777767666666 8982 34444211 11 01112222367777787765421 1 Q ss_pred cccccch-hhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhccc Q 005625 380 ISRFDVW-PYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEK 458 (687) Q Consensus 380 isr~~iw-p~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~ 458 (687) .+...++ |+-.-......+.+++ ..+||+|.+-......-+.++|..+|+|+++-.-+.-. +..|+ T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~il~--~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~------G~ank----- 131 (357) T COG0707 65 GSLKLLKAPFKLLKGVLQARKILK--KLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP------GLANK----- 131 (357) T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc------chhHH----- Confidence 1101111 0000011112233334 47999999977666666778888999999865433211 22222 Q ss_pred ccccchhHHHHHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCCh Q 005625 459 YHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSE 538 (687) Q Consensus 459 y~~s~rf~aE~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~ 538 (687) +..+.|+.|-++ +.+.. .+ ..+.++.++-+-|..+.+. ... T Consensus 132 -----------~~~~~a~~V~~~-f~~~~-------~~-------------------~~~~~~~~tG~Pvr~~~~~-~~~ 172 (357) T COG0707 132 -----------ILSKFAKKVASA-FPKLE-------AG-------------------VKPENVVVTGIPVRPEFEE-LPA 172 (357) T ss_pred -----------HhHHhhceeeec-ccccc-------cc-------------------CCCCceEEecCcccHHhhc-cch Confidence 334556666553 32211 11 1123677777777655443 221 Q ss_pred HHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCC Q 005625 539 KQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKS 618 (687) Q Consensus 539 ~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s 618 (687) ...+ . ....++++|+.+|-=---+.+..++.... ..+.+..+++...|.. T Consensus 173 ~~~~---------~--------------~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~--~~l~~~~~v~~~~G~~----- 222 (357) T COG0707 173 AEVR---------K--------------DGRLDKKTILVTGGSQGAKALNDLVPEAL--AKLANRIQVIHQTGKN----- 222 (357) T ss_pred hhhh---------h--------------hccCCCcEEEEECCcchhHHHHHHHHHHH--HHhhhCeEEEEEcCcc----- Confidence 1111 0 01127888999885443344555554443 2223346666665641 Q ss_pred CChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEE Q 005625 619 KDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQ 671 (687) Q Consensus 619 ~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVl 671 (687) ..++++..-++++. ++..+| . ++++++|+.+ |+.|. T Consensus 223 -------~~~~~~~~~~~~~~---~~v~~f-~--~dm~~~~~~A----DLvIs 258 (357) T COG0707 223 -------DLEELKSAYNELGV---VRVLPF-I--DDMAALLAAA----DLVIS 258 (357) T ss_pred -------hHHHHHHHHhhcCc---EEEeeH-H--hhHHHHHHhc----cEEEe Confidence 13344455555555 888897 3 4799999864 88875 No 105 >PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B. Probab=97.46 E-value=0.00081 Score=76.59 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=110.9 Q ss_pred CCceEEEeCCCChhHHHHHHHHcC-CCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 406 GFPDFIIGNYSDGNLVASLLAYKM-GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 406 ~~PDLIH~Hys~aglvA~llAr~l-gVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) ..-|+|-.|...--+++.++.++. +.++.+..|.-. |.+.+ ++.+ ..+ ..-..+|-.||.|=--|+. T Consensus 140 ~~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPF----Ps~e~-fr~l------P~r-~eiL~glL~aDlIgFqt~~ 207 (474) T PF00982_consen 140 RPGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPF----PSSEI-FRCL------PWR-EEILRGLLGADLIGFQTFE 207 (474) T ss_dssp -TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S--------HHH-HTTS------TTH-HHHHHHHTTSSEEEESSHH T ss_pred cCCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCC----CCHHH-HhhC------CcH-HHHHHHhhcCCEEEEecHH Confidence 356899999877777777776654 567777888642 21111 1111 111 1125678899999887754 Q ss_pred HHhccccccccccccccccccccceeec--ccccCCC--cceEeeCCCCCCCCCCCCh---HHHhhhhhhhhhhhhhcCC Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVH--GIDVFDP--KFNIVSPGADMDIYFPYSE---KQKRLTALHGSIEQLLFDP 557 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~--gi~v~~p--K~~VIpnGVD~~~F~p~~~---~~~r~~~l~~~i~~ll~~~ 557 (687) -.. .+-+.+. .+-++-..-. ++..... ++.+.|-|||++.|..... ..++. .++++. T Consensus 208 ~~~-------nFl~~~~-r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~----~~l~~~---- 271 (474) T PF00982_consen 208 YAR-------NFLSCCK-RLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERA----EELREK---- 271 (474) T ss_dssp HHH-------HHHHHHH-HHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHH----HHHHHH---- T ss_pred HHH-------HHHHHHH-HHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHH----HHHHHh---- Confidence 432 1111100 0000000000 0111112 6888899999877642111 11111 122221 Q ss_pred CcccccccCCCCCC-CCEEEEEecCCcCCCHHHHHHHHhhccc----cCCCceEEEEEccCCCCCCCChHHHHHHHHHHH Q 005625 558 EQNDEHVGTLSDRS-KPIVFSMARLDHVKNMTGLVECYGKNSQ----LRELVNLVVVAGYIDVNKSKDREEIAEIEKMHE 632 (687) Q Consensus 558 ~~~~~~~g~l~~~~-kPiIl~VGRLdp~Kni~~LVeAfa~l~~----l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~ 632 (687) + .+ ..+|+.+.|+|+.||+..=++||.++.+ .+..+.|+-|+-. ..+...+.+...+++.+ T Consensus 272 --------~---~~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~p---sr~~~~~y~~~~~~v~~ 337 (474) T PF00982_consen 272 --------F---KGKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVP---SREDVPEYQELRREVEE 337 (474) T ss_dssp --------T---TT-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B----STTSHHHHHHHHHHHH T ss_pred --------c---CCCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeec---cCccchhHHHHHHHHHH Confidence 1 23 4799999999999999999999987744 3445556555421 22222323333334444 Q ss_pred HHHH----cCCCC--cEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcc Q 005625 633 LMKT----YKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPS 684 (687) Q Consensus 633 li~e----lgL~~--~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa 684 (687) ++.+ +|-.+ -|+++--.++.+++..+|+.| |+++..|+. |.-++..|- T Consensus 338 ~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~a----Dv~lvTslrDGmNLva~Ey 392 (474) T PF00982_consen 338 LVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAA----DVALVTSLRDGMNLVAKEY 392 (474) T ss_dssp HHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-----SEEEE--SSBS--HHHHHH T ss_pred HHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhh----hhEEecchhhccCCcceEE Confidence 4433 55333 355554358999999999975 999999999 999999885 No 106 >PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] Probab=97.40 E-value=0.0055 Score=74.47 Aligned_cols=232 Identities=17% Similarity=0.196 Sum_probs=133.1 Q ss_pred eEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHh Q 005625 409 DFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIA 487 (687) Q Consensus 409 DLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~ 487 (687) |+|-.|...--+++.++.++ -.+++.+..|.-. |.+.++ ..+ ..| ..-..+|-.||.|=--|+.-.. T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPF----Ps~eif-r~L------P~r-~eiL~glL~aDlIGFht~~yar 270 (854) T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPF----PSSEIY-KTL------PIR-EELLRALLNSDLIGFHTFDYAR 270 (854) T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCC----CChHHH-hhC------CcH-HHHHHHHhcCCeEEecCHHHHH Confidence 89999988777788877655 4567778888642 222211 111 011 1225678899998877754432 Q ss_pred ccccccccccccccccccccc----eeecccccCCC--cceEeeCCCCCCCCCCC---ChHHHhhhhhhhhhhhhhcCCC Q 005625 488 GTKNTVGQYESHTAFTLPGLY----RVVHGIDVFDP--KFNIVSPGADMDIYFPY---SEKQKRLTALHGSIEQLLFDPE 558 (687) Q Consensus 488 ~~~~~v~qyes~~~f~lp~Ly----rvv~gi~v~~p--K~~VIpnGVD~~~F~p~---~~~~~r~~~l~~~i~~ll~~~~ 558 (687) .+-+ ++-.|-|+- ++..|+..... ++.+.|-|||+..|... .+...+. .++++ T Consensus 271 -------~Fl~-~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~----~~l~~------ 332 (854) T PLN02205 271 -------HFLS-CCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKV----KELIK------ 332 (854) T ss_pred -------HHHH-HHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHH----HHHHH------ Confidence 1211 000011110 00001111112 78889999998877422 1111221 12221 Q ss_pred cccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCC----CceEEEEEccCCCCCCCChH---HHHHHHHHH Q 005625 559 QNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRE----LVNLVVVAGYIDVNKSKDRE---EIAEIEKMH 631 (687) Q Consensus 559 ~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~----~~nLVLVGG~~d~~~s~d~e---e~~el~~L~ 631 (687) . +.++++.+|+.|-|||.-||+..=++||.++.+.++ .+.||-|+-. ..+.-.+ .+.+++++- T Consensus 333 ------~-~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~p---sr~~~~~y~~~~~ev~~~v 402 (854) T PLN02205 333 ------Q-FCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANP---ARGKGKDVKEVQAETHSTV 402 (854) T ss_pred ------H-hccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecC---CCcccHHHHHHHHHHHHHH Confidence 1 122457899999999999999999999998754443 4455555421 1111122 333333333 Q ss_pred HHHHH-cCCCC--cEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcc Q 005625 632 ELMKT-YKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPS 684 (687) Q Consensus 632 ~li~e-lgL~~--~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa 684 (687) ..|+. +|-.+ -|+++--.++.+++..+|+.| |+++..|+. |+-|+.-|- T Consensus 403 ~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~A----Dv~lVT~lRDGMNLva~Ey 455 (854) T PLN02205 403 KRINETFGKPGYDPIVLIDAPLKFYERVAYYVVA----ECCLVTAVRDGMNLIPYEY 455 (854) T ss_pred HHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhc----cEEEeccccccccccchhe Confidence 33332 33222 367764357889999999965 999999999 999998874 No 107 >PRK10117 trehalose-6-phosphate synthase; Provisional Probab=97.35 E-value=0.0062 Score=69.30 Aligned_cols=231 Identities=13% Similarity=0.082 Sum_probs=129.2 Q ss_pred ceEEEeCCCChhHHHHHHHHc-CCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHH Q 005625 408 PDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 486 (687) Q Consensus 408 PDLIH~Hys~aglvA~llAr~-lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi 486 (687) =|+|-.|...--+++..+.++ .+.++.+-.|.-. |.+.+ |..+ ..+ ..-..+|-.||.|=--|.... T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPF----Ps~ei-fr~L------P~r-~eil~glL~aDlIGFqt~~y~ 191 (474) T PRK10117 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPF----PTPEI-FNAL------PPH-DELLEQLCDYDLLGFQTENDR 191 (474) T ss_pred CCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCC----CChHH-HhhC------CCh-HHHHHHHHhCccceeCCHHHH Confidence 489999988777778777554 4556777777532 22221 1111 111 112467888898776665433 Q ss_pred hccccccccccccccccccccceee-cccccCC-C-cceEeeCCCCCCCCCCCCh--HHHhhhhhhhhhhhhhcCCCccc Q 005625 487 AGTKNTVGQYESHTAFTLPGLYRVV-HGIDVFD-P-KFNIVSPGADMDIYFPYSE--KQKRLTALHGSIEQLLFDPEQND 561 (687) Q Consensus 487 ~~~~~~v~qyes~~~f~lp~Lyrvv-~gi~v~~-p-K~~VIpnGVD~~~F~p~~~--~~~r~~~l~~~i~~ll~~~~~~~ 561 (687) . .+-+.+ -.+-++-..- ..+.... . ++.+.|-|||++.|..... ...+. .++++. T Consensus 192 r-------nFl~~~-~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~----~~lr~~-------- 251 (474) T PRK10117 192 L-------AFLDCL-SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKL----AQLKAE-------- 251 (474) T ss_pred H-------HHHHHH-HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHH----HHHHHH-------- Confidence 2 111100 0000000000 0000001 1 6888899999888753211 11111 122211 Q ss_pred ccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccC----CCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHH- Q 005625 562 EHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT- 636 (687) Q Consensus 562 ~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~----~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~e- 636 (687) + .++.+|+.+-|||+-||+..=++||.++.+.+ .++.|+-|+-. +.+.-.+.+....++.+++.+ T Consensus 252 ----~---~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~p---sR~~v~~Y~~l~~~v~~~vg~I 321 (474) T PRK10117 252 ----L---KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPT---SRGDVQAYQDIRHQLETEAGRI 321 (474) T ss_pred ----c---CCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCC---CCCccHHHHHHHHHHHHHHHHH Confidence 1 25679999999999999999999999875444 34555555421 222222333333344444444 Q ss_pred ---cCCCC--cEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcc Q 005625 637 ---YKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPS 684 (687) Q Consensus 637 ---lgL~~--~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa 684 (687) +|=.+ -|+++--.++++++..+|+.| ||.+..|+. |+-||.-|- T Consensus 322 Ng~fg~~~w~Pv~y~~~~~~~~~l~alyr~A----Dv~lVTplRDGMNLVAkEy 371 (474) T PRK10117 322 NGKYGQLGWTPLYYLNQHFDRKLLMKIFRYS----DVGLVTPLRDGMNLVAKEY 371 (474) T ss_pred HhccCCCCceeEEEecCCCCHHHHHHHHHhc----cEEEecccccccccccchh Confidence 33222 255554357899999999965 999999999 999998874 No 108 >PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important. Probab=97.13 E-value=0.0063 Score=60.44 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=82.0 Q ss_pred CCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccccccchhhHHHH---------HHHH Q 005625 326 QGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETF---------TEDV 396 (687) Q Consensus 326 ~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f---------~~~~ 396 (687) +|| +|.-+|.. .. ... . +|+++++....... ...+.||+..| +..+ T Consensus 2 ~gh----~v~fl~~~--~~------~~~---~--~GV~~~~y~~~~~~--------~~~~~~~~~~~e~~~~rg~av~~a 56 (171) T PF12000_consen 2 RGH----EVVFLTER--KR------PPI---P--PGVRVVRYRPPRGP--------TPGTHPYVRDFEAAVLRGQAVARA 56 (171) T ss_pred CCC----EEEEEecC--CC------CCC---C--CCcEEEEeCCCCCC--------CCCCCcccccHHHHHHHHHHHHHH Confidence 789 88988843 11 111 1 37888887663221 12233332222 1233 Q ss_pred HHHHHHhcCCCceEEEeCCCChhHHHHHHHHcC-CCcEEE------EecCCccccCCCCchhhhhhcccccccchhHHHH Q 005625 397 GSEITAELQGFPDFIIGNYSDGNLVASLLAYKM-GITQCT------IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADL 469 (687) Q Consensus 397 ~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~l-gVP~V~------T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~ 469 (687) +..|++ .+..||||.+|..-|. +..++... ++|++. ..++.....-+.....+.. ..+...+=+.-. T Consensus 57 ~~~L~~-~Gf~PDvI~~H~GWGe--~Lflkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~---~~~~r~rN~~~l 130 (171) T PF12000_consen 57 ARQLRA-QGFVPDVIIAHPGWGE--TLFLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDD---RARLRMRNAHNL 130 (171) T ss_pred HHHHHH-cCCCCCEEEEcCCcch--hhhHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHH---HHHHHHHhHHHH Confidence 444544 3778999999975543 34556666 788764 1222110000000111111 111112223346 Q ss_pred HHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCC Q 005625 470 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIY 533 (687) Q Consensus 470 iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F 533 (687) .++..||..|++|.-... +| |..+ ..|+.||+-|||++.+ T Consensus 131 ~~l~~~D~~isPT~wQ~~-------~f--------P~~~---------r~kI~VihdGiDt~~~ 170 (171) T PF12000_consen 131 LALEQADAGISPTRWQRS-------QF--------PAEF---------RSKISVIHDGIDTDRF 170 (171) T ss_pred HHHHhCCcCcCCCHHHHH-------hC--------CHHH---------HcCcEEeecccchhhc Confidence 788999999999964332 33 3333 3699999999998765 No 109 >COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] Probab=96.37 E-value=0.16 Score=58.16 Aligned_cols=234 Identities=17% Similarity=0.108 Sum_probs=126.9 Q ss_pred eEEEeCCCChhHHHHHHHHcC-CCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHHHHh Q 005625 409 DFIIGNYSDGNLVASLLAYKM-GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIA 487 (687) Q Consensus 409 DLIH~Hys~aglvA~llAr~l-gVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~qEi~ 487 (687) |+|-.|...--+++..+..+. ..+..+..|.-..+.--...+.|. ..-...+-.||+|=--|..-.. T Consensus 149 DiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r------------~eIl~gll~~dligFqt~~y~~ 216 (486) T COG0380 149 DIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWR------------EEILEGLLGADLIGFQTESYAR 216 (486) T ss_pred CEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchH------------HHHHHHhhcCCeeEecCHHHHH Confidence 999999877777777776554 456777778643221001112221 1114567788988754432221 Q ss_pred ccccccccccccccccccccceeec-ccccCCCcceEeeCCCCCCCCCCCChHH---HhhhhhhhhhhhhhcCCCccccc Q 005625 488 GTKNTVGQYESHTAFTLPGLYRVVH-GIDVFDPKFNIVSPGADMDIYFPYSEKQ---KRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 488 ~~~~~v~qyes~~~f~lp~Lyrvv~-gi~v~~pK~~VIpnGVD~~~F~p~~~~~---~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) ..-+...+.. .++ +.-.+.. |-+.-.-++...|-|||+..|....... .+. .++++ T Consensus 217 nF~~~~~r~~---~~~--~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~----~el~~----------- 276 (486) T COG0380 217 NFLDLCSRLL---GVT--GDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKV----LELKA----------- 276 (486) T ss_pred HHHHHHHHhc---ccc--ccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHH----HHHHH----------- Confidence 1000000000 000 0000000 0000012677889999987764221100 111 11222 Q ss_pred ccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccC----CCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHc-C Q 005625 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTY-K 638 (687) Q Consensus 564 ~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~----~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~el-g 638 (687) .+ ..++.+|+.+-|||..||+..=+.||.++.+.. ..+-++-++-. +...-.+.+....+++.++.+. | T Consensus 277 --~~-~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~p---Sr~~v~~y~~~~~~i~~~V~rIN~ 350 (486) T COG0380 277 --EL-GRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPP---SREDVEEYQALRLQIEELVGRING 350 (486) T ss_pred --Hh-cCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCC---CccccHHHHHHHHHHHHHHHHHHh Confidence 11 224789999999999999999999999886443 34445544422 1111222223334444444442 2 Q ss_pred CCCc-----EEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhcc Q 005625 639 LDGQ-----FRWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPS 684 (687) Q Consensus 639 L~~~-----V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa 684 (687) ..|. |.++--.++++++..+|+.+ |+++..|+. |.-+|..|- T Consensus 351 ~fG~~~~~Pv~~l~~~~~~~~l~al~~~a----Dv~lVtplrDGMNLvakEy 398 (486) T COG0380 351 EFGSLSWTPVHYLHRDLDRNELLALYRAA----DVMLVTPLRDGMNLVAKEY 398 (486) T ss_pred hcCCCCcceeEEEeccCCHHHHHHHHhhh----ceeeeccccccccHHHHHH Confidence 3344 44444358889999999965 999999999 999998884 No 110 >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Probab=96.13 E-value=0.21 Score=52.72 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=26.9 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCCcc Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEK 442 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL~~ 442 (687) ..+||+|.+-+... +..+|+..|+|++...|.... T Consensus 92 ~~~pDlVIsD~~~~---~~~aa~~~giP~i~i~~~~~~ 126 (318) T PF13528_consen 92 EFRPDLVISDFYPL---AALAARRAGIPVIVISNQYWF 126 (318) T ss_pred hcCCCEEEEcChHH---HHHHHHhcCCCEEEEEehHHc Confidence 46899999875443 567788999999988876543 No 111 >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. Probab=96.07 E-value=0.91 Score=48.12 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=59.0 Q ss_pred CCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccC Q 005625 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 651 (687) Q Consensus 572 kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~ 651 (687) +.+++++|-.++.+....+++++.+.. ...++.+|.|... +. .+++++.++.+ ++|++.++ + T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~-------~~---~~~l~~~~~~~---~~i~~~~~-~- 232 (279) T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSN-------PN---LDELKKFAKEY---PNIILFID-V- 232 (279) T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCC-------cC---HHHHHHHHHhC---CCEEEEeC-H- Confidence 458999999999876778889987542 3456655555422 11 23445555553 47888885 3 Q ss_pred cccHHHHHHHhhcCCcEEEEcCCCCCchhhhcccC Q 005625 652 RARNGELYRYIADTKGAFVQVYVHPIPLNFLPSYK 686 (687) Q Consensus 652 ~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~~ 686 (687) +++++++..+ |++|.++ |.|+.|+.+ T Consensus 233 -~~m~~lm~~a----Dl~Is~~----G~T~~E~~a 258 (279) T TIGR03590 233 -ENMAELMNEA----DLAIGAA----GSTSWERCC 258 (279) T ss_pred -HHHHHHHHHC----CEEEECC----chHHHHHHH Confidence 5788998864 9999854 677777654 No 112 >PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process Probab=96.00 E-value=0.027 Score=50.04 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=47.1 Q ss_pred CCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhH--HHHHHHHcCCCcEEEEe Q 005625 360 EHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNL--VASLLAYKMGITQCTIA 437 (687) Q Consensus 360 ~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~agl--vA~llAr~lgVP~V~T~ 437 (687) .|.+|+.+|+.+.- .....|-+-... .+.+.|.- ..+.||||+|.+.+++ =|.+-|+.+|++.|+|= T Consensus 14 ngLKVYYlP~~~~~--------~~~t~Pt~~~~~-pl~R~Ili--rE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTD 82 (90) T PF08288_consen 14 NGLKVYYLPLKVFY--------NQCTLPTLFGSF-PLLRNILI--RERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTD 82 (90) T ss_pred CCeEEEeecchhhh--------cCcchHHHHHhh-HHHHHHHH--HcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeec Confidence 48899999987531 123344332111 23344332 4689999999875544 56778999999999999 Q ss_pred cCC Q 005625 438 HAL 440 (687) Q Consensus 438 HaL 440 (687) |++ T Consensus 83 HSL 85 (90) T PF08288_consen 83 HSL 85 (90) T ss_pred ccc Confidence 998 No 113 >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function. Probab=95.58 E-value=1.7 Score=47.81 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=23.4 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEec Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~H 438 (687) +.+||++.++.+. -|..+|..+|+|.|.-.. T Consensus 81 ~~~pDv~is~~s~---~a~~va~~lgiP~I~f~D 111 (335) T PF04007_consen 81 KFKPDVAISFGSP---EAARVAFGLGIPSIVFND 111 (335) T ss_pred hhCCCEEEecCcH---HHHHHHHHhCCCeEEEec Confidence 3789999988664 355667789999987654 No 114 >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. Probab=94.65 E-value=0.15 Score=55.78 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.8 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCC Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHAL 440 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL 440 (687) ..+||+|+++. ....|..+|+++|||.|.+.++. T Consensus 102 ~~~pDlvi~d~--~~~~~~~~A~~~giP~v~~~~~~ 135 (401) T cd03784 102 DWGPDLVVADP--LAFAGAVAAEALGIPAVRLLLGP 135 (401) T ss_pred ccCCCEEEeCc--HHHHHHHHHHHhCCCeEEeeccc Confidence 37899999986 23446778899999999888764 No 115 >TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Probab=94.53 E-value=0.17 Score=57.46 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=61.2 Q ss_pred HHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCc Q 005625 588 TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKG 667 (687) Q Consensus 588 ~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~d 667 (687) +.+|++++.+.+.-|++.|-|.++. +. -.+|.++ ++| ++-+.+.|+ ...++.++|.-| | T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~t---------e~---s~kL~~L-~~y--~nvvly~~~--~~~~l~~ly~~~----d 349 (438) T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALT---------EM---SSKLMSL-DKY--DNVKLYPNI--TTQKIQELYQTC----D 349 (438) T ss_pred HHHHHHHHHHHHhCCCcEEEEEecC---------cc---cHHHHHH-Hhc--CCcEEECCc--ChHHHHHHHHhc----c Confidence 8999999988777788999872232 11 1466777 777 788888895 345788999965 9 Q ss_pred EEEEcCCC-CCchhhhcccC Q 005625 668 AFVQVYVH-PIPLNFLPSYK 686 (687) Q Consensus 668 VFVlPSl~-gFGLviLEa~~ 686 (687) +++..|.. +||++++||.+ T Consensus 350 lyLdin~~e~~~~al~eA~~ 369 (438) T TIGR02919 350 IYLDINHGNEILNAVRRAFE 369 (438) T ss_pred EEEEccccccHHHHHHHHHH Confidence 99999999 99999999864 No 116 >TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. Probab=94.09 E-value=2.1 Score=47.85 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=22.9 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) ..+||+|.+- |++++.++|+.+|+|+++ T Consensus 91 ~~~p~~v~~~---Gg~v~~~aA~~~~~p~~~ 118 (396) T TIGR03492 91 AKKGDLIVAV---GDIVPLLFAWLSGKPYAF 118 (396) T ss_pred hhcCCEEEEE---CcHHHHHHHHHcCCCceE Confidence 4499999874 667788889999999876 No 117 >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] Probab=92.54 E-value=13 Score=41.33 Aligned_cols=293 Identities=15% Similarity=0.091 Sum_probs=141.7 Q ss_pred CCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHh-c Q 005625 326 QGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAE-L 404 (687) Q Consensus 326 ~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~-~ 404 (687) +|. +|+++--..+ .+.|.+-.-++++|+.+|..+.....+ +.-..+ +..|-+-+ .-+.+. . T Consensus 39 ~gf----~VdliGy~~s--------~p~e~l~~hprI~ih~m~~l~~~~~~p----~~~~l~-lKvf~Qfl-~Ll~aL~~ 100 (444) T KOG2941|consen 39 LGF----QVDLIGYVES--------IPLEELLNHPRIRIHGMPNLPFLQGGP----RVLFLP-LKVFWQFL-SLLWALFV 100 (444) T ss_pred cCC----eEEEEEecCC--------CChHHHhcCCceEEEeCCCCcccCCCc----hhhhhH-HHHHHHHH-HHHHHHHh Confidence 798 8998854321 145555556799999988765432222 111111 22222111 111111 1 Q ss_pred CCCceEEEeCCCC---hhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEec Q 005625 405 QGFPDFIIGNYSD---GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITS 481 (687) Q Consensus 405 ~~~PDLIH~Hys~---aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IIts 481 (687) ...||+|-....+ .-.++.+++...|..+++--|.++++- ...+.-.......+... ..|...-+-||.-.|+ T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl--~l~~~~g~~h~lV~l~~--~~E~~fgk~a~~nLcV 176 (444) T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSL--QLKLKLGFQHPLVRLVR--WLEKYFGKLADYNLCV 176 (444) T ss_pred ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHH--HHHhhcCCCCchHHHHH--HHHHHhhcccccchhh Confidence 4678988877542 345667777888999999999887640 00000000000011111 2366777889999999 Q ss_pred CHHHHhccccccccccccccccccccceeecccccCCCcc------e--EeeCCCCCCCCCCCChHHHhhhhhhhhhhhh Q 005625 482 TYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKF------N--IVSPGADMDIYFPYSEKQKRLTALHGSIEQL 553 (687) Q Consensus 482 S~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~------~--VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~l 553 (687) |++... |....+.--.|. -+| +.+..+- + -.+-|=|-+.|..... +. +..+.. T Consensus 177 T~AMr~---dL~qnWgi~ra~---v~Y------DrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~-q~------~~~~~t 237 (444) T KOG2941|consen 177 TKAMRE---DLIQNWGINRAK---VLY------DRPPSKPTPLDEQHELFMKLAGDHSPFRAREP-QD------KALERT 237 (444) T ss_pred HHHHHH---HHHHhcCCceeE---EEe------cCCCCCCCchhHHHHHHhhhccccchhhhccc-cc------chhhhh Confidence 976543 222222100000 011 1100000 0 0001112122221100 00 111111 Q ss_pred hcCCCcccccccCCCCCCCCE-EEEEecCCcCCCHHHHHHHHhhc-----cccCCCceEE-EEEccCCCCCCCChHHHHH Q 005625 554 LFDPEQNDEHVGTLSDRSKPI-VFSMARLDHVKNMTGLVECYGKN-----SQLRELVNLV-VVAGYIDVNKSKDREEIAE 626 (687) Q Consensus 554 l~~~~~~~~~~g~l~~~~kPi-Il~VGRLdp~Kni~~LVeAfa~l-----~~l~~~~nLV-LVGG~~d~~~s~d~ee~~e 626 (687) .|.+.++..... ..++.|. +++--.-.|..++.-|++|...- ..-....+|+ |++|. |+++ T Consensus 238 af~~k~~s~~v~--~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK--------GPlk-- 305 (444) T KOG2941|consen 238 AFTKKDASGDVQ--LLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK--------GPLK-- 305 (444) T ss_pred hHhhhcccchhh--hccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC--------Cchh-- Confidence 111111111111 1244554 44555789999999999998622 1111234554 55565 2343 Q ss_pred HHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC Q 005625 627 IEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH 675 (687) Q Consensus 627 l~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~ 675 (687) ++..+.|+++++.. |.+.-.++.-+|-|.+...| | -||....|.+ T Consensus 306 -E~Y~~~I~~~~~~~-v~~~tpWL~aEDYP~ll~sa-D-lGVcLHtSSS 350 (444) T KOG2941|consen 306 -EKYSQEIHEKNLQH-VQVCTPWLEAEDYPKLLASA-D-LGVCLHTSSS 350 (444) T ss_pred -HHHHHHHHHhcccc-eeeeecccccccchhHhhcc-c-cceEeeecCc Confidence 34567899999864 44433247778889888754 3 3677777765 No 118 >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. Probab=92.12 E-value=4.5 Score=44.60 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=28.2 Q ss_pred CCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecC Q 005625 405 QGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHA 439 (687) Q Consensus 405 ~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~Ha 439 (687) ..+||+|..|.. ...+.|+++|..++||+++..=+ T Consensus 91 ~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365) T TIGR03568 91 RLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365) T ss_pred HhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC Confidence 368999999974 56778899999999999965444 No 119 >TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. Probab=91.88 E-value=0.87 Score=48.87 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.5 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEEEecCC Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHAL 440 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~HaL 440 (687) ..+||+|++.+.. .+.++|+.+|||.+.+.|.. T Consensus 91 ~~~pDlVi~d~~~---~~~~aA~~~~iP~i~i~~q~ 123 (321) T TIGR00661 91 EYNPDLIISDFEY---STVVAAKLLKIPVICISNQN 123 (321) T ss_pred hcCCCEEEECCch---HHHHHHHhcCCCEEEEecch Confidence 4789999998554 45778999999999887843 No 120 >PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY. Probab=91.01 E-value=0.34 Score=51.47 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=48.7 Q ss_pred CCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCcccc-CCC-Cchhhh----hhccc-ccccchhHHHHHHHhcCCE Q 005625 406 GFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTK-YPD-SDIYWK----KFDEK-YHFSCQFTADLIAMNNADF 477 (687) Q Consensus 406 ~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~k-y~~-s~l~w~----~~~~~-y~~s~rf~aE~iam~~AD~ 477 (687) .+.||.|+... .+|++|++++++.|+|++.|-|+..... +.. ..-.|. .+... ..|.. ..-+.++++||. T Consensus 171 P~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~--~l~~~~Y~~Ad~ 248 (268) T PF11997_consen 171 PKADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFE--SLSRLAYRAADR 248 (268) T ss_pred CCCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHH--HHHHHHHHhhCe Confidence 46799999976 6899999999999999999999984211 000 011121 01000 11111 123578999999 Q ss_pred EEecCH Q 005625 478 IITSTY 483 (687) Q Consensus 478 IItsS~ 483 (687) |++... T Consensus 249 I~~l~~ 254 (268) T PF11997_consen 249 ITPLYE 254 (268) T ss_pred ecccch Confidence 998653 No 121 >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] Probab=90.74 E-value=34 Score=38.81 Aligned_cols=96 Identities=18% Similarity=0.108 Sum_probs=59.6 Q ss_pred CCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcE-------- Q 005625 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF-------- 643 (687) Q Consensus 572 kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V-------- 643 (687) +|++.+.|. ...--+.+++++..+++..+++.|++|=.. +|+ .+.+++++++.|+.=.- T Consensus 231 r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRH---------pER--f~~v~~l~~~~gl~~~~rS~~~~~~ 297 (419) T COG1519 231 RPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRH---------PER--FKAVENLLKRKGLSVTRRSQGDPPF 297 (419) T ss_pred CceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCC---------hhh--HHHHHHHHHHcCCeEEeecCCCCCC Confidence 788888887 233344578999888887777877777443 233 56778889998764211 Q ss_pred ----EEcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhccc Q 005625 644 ----RWIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSY 685 (687) Q Consensus 644 ----~flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~ 685 (687) .++|-.+ -++..+|+.+ | =+||==|+- -=|=.+||+. T Consensus 298 ~~tdV~l~Dtm--GEL~l~y~~a-d--iAFVGGSlv~~GGHN~LEpa 339 (419) T COG1519 298 SDTDVLLGDTM--GELGLLYGIA-D--IAFVGGSLVPIGGHNPLEPA 339 (419) T ss_pred CCCcEEEEecH--hHHHHHHhhc-c--EEEECCcccCCCCCChhhHH Confidence 1122111 2456667643 2 567777777 3377777764 No 122 >KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] Probab=87.14 E-value=0.31 Score=54.77 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=81.8 Q ss_pred EEEeCCCChhHHHHHHHHcCCCc--EEEEecCCccccCCC---Cchh----hhhhcc---cccccchhHHHHHHHhcCCE Q 005625 410 FIIGNYSDGNLVASLLAYKMGIT--QCTIAHALEKTKYPD---SDIY----WKKFDE---KYHFSCQFTADLIAMNNADF 477 (687) Q Consensus 410 LIH~Hys~aglvA~llAr~lgVP--~V~T~HaL~~~ky~~---s~l~----w~~~~~---~y~~s~rf~aE~iam~~AD~ 477 (687) +-|-|-|.+| ||..++|...+| .|+|-|+.--.+|.- .+.| --++++ +..+..|+..|+-+...|+. T Consensus 177 VahFHEW~AG-VgL~l~R~rrl~iaTifTTHATLLGRyLCA~~~DfYNnLd~f~vD~EAGkr~IYHrYC~ERaa~h~AhV 255 (692) T KOG3742|consen 177 VAHFHEWQAG-VGLILCRARRLDIATIFTTHATLLGRYLCAGNVDFYNNLDSFDVDKEAGKRQIYHRYCLERAAAHTAHV 255 (692) T ss_pred HHHHHHHHhc-cchheehhcccceEEEeehhHHHHHHHHhcccchhhhchhhcccchhhccchhHHHHHHHHHhhhhhhh Confidence 3456668777 466666665555 567888752222210 0111 001111 12233455578888888888 Q ss_pred EEecCHHHHhccccccccccc-cccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcC Q 005625 478 IITSTYQEIAGTKNTVGQYES-HTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFD 556 (687) Q Consensus 478 IItsS~qEi~~~~~~v~qyes-~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~ 556 (687) ..|+|. |.+ +|. | -|.| ..=.|.|||.+...|...-+-+.-.+.-.++|.+..-| T Consensus 256 FTTVSe--ITa-------~EAeH------lLkR---------KPD~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRG 311 (692) T KOG3742|consen 256 FTTVSE--ITA-------LEAEH------LLKR---------KPDVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRG 311 (692) T ss_pred hhhHHH--HHH-------HHHHH------HHhc---------CCCeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhh Confidence 777753 331 221 1 0111 23356799999888864332211100011223322110 Q ss_pred CCcccccccCCCCCCC-CEEEEEecCC-cCCCHHHHHHHHhhcc Q 005625 557 PEQNDEHVGTLSDRSK-PIVFSMARLD-HVKNMTGLVECYGKNS 598 (687) Q Consensus 557 ~~~~~~~~g~l~~~~k-PiIl~VGRLd-p~Kni~~LVeAfa~l~ 598 (687) . --.+..| +-+| -++|..||.. ..||-+..||+++++. T Consensus 312 H--F~GhlDF--dLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692) T KOG3742|consen 312 H--FHGHLDF--DLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692) T ss_pred h--ccccccc--cccceEEEEEeeeeeeccCchHHHHHHHHHhH Confidence 0 0011122 2344 4577778987 4999999999999874 No 123 >TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. Probab=85.50 E-value=3.8 Score=44.93 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=58.0 Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcc-cccccc Q 005625 302 GGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKG-ILRQWI 380 (687) Q Consensus 302 GGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~-~~~~~i 380 (687) -|-+.-.+.+|++|.+ +|| +|.++|... +...++. .|+..+-+|...... ..+. . T Consensus 6 ~Ghv~P~l~lA~~L~~--------~Gh----~V~~~~~~~-------~~~~v~~----~G~~~~~~~~~~~~~~~~~~-~ 61 (392) T TIGR01426 6 HGHVNPTLGVVEELVA--------RGH----RVTYATTEE-------FAERVEA----AGAEFVLYGSALPPPDNPPE-N 61 (392) T ss_pred cccccccHHHHHHHHh--------CCC----eEEEEeCHH-------HHHHHHH----cCCEEEecCCcCcccccccc-c Confidence 4556667888888877 899 999998631 1112221 245555554322110 0000 0 Q ss_pred ccccchhhHHHHHH---HHHHHHHHh-cCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEec Q 005625 381 SRFDVWPYLETFTE---DVGSEITAE-LQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 381 sr~~iwp~Le~f~~---~~~~~L~~~-~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~H 438 (687) .....+..++.+.. .....+... ...+||+|.++... ..|..+|+++|||.|.+.. T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~--~~~~~~A~~~giP~v~~~~ 121 (392) T TIGR01426 62 TEEEPIDIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIAS--WTGRLLARKWDVPVISSFP 121 (392) T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcc--HHHHHHHHHhCCCEEEEeh Confidence 00122222222221 111222221 13589999988743 3577889999999987653 No 124 >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. Probab=84.03 E-value=8.9 Score=42.16 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=87.6 Q ss_pred CCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCHH Q 005625 406 GFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (687) Q Consensus 406 ~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~q 484 (687) .+||+|..+.- ...++|+++|..++||+++.--|+-..... ++. .++..+ ...-+-|+.-.|+|.. T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~-~g~----~de~~R--------~~i~~la~lhf~~t~~ 132 (346) T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRT-EGM----PDEINR--------HAIDKLAHLHFAPTEE 132 (346) T ss_dssp HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-TT-SST----THHHHH--------HHHHHH-SEEEESSHH T ss_pred cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCccccC-CCC----chhhhh--------hhhhhhhhhhccCCHH Confidence 58999998854 467788999999999988776665211110 011 111111 1334568888888865 Q ss_pred HHhccccccccccccccccccccceeecccccCCCcceEeeC-CCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCccccc Q 005625 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (687) Q Consensus 485 Ei~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpn-GVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~ 563 (687) .... +.+. +..+.|+.++-| ++|.-.. ... ...+.... T Consensus 133 ~~~~----L~~~------------------G~~~~rI~~vG~~~~D~l~~-----~~~---~~~~~~~~----------- 171 (346) T PF02350_consen 133 ARER----LLQE------------------GEPPERIFVVGNPGIDALLQ-----NKE---EIEEKYKN----------- 171 (346) T ss_dssp HHHH----HHHT------------------T--GGGEEE---HHHHHHHH-----HHH---TTCC-HHH----------- T ss_pred HHHH----HHhc------------------CCCCCeEEEEChHHHHHHHH-----hHH---HHhhhhhh----------- Confidence 4321 0111 222337777743 4442100 000 00000000 Q ss_pred ccCCCCCCCCEEEEEe-cCCc---CCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC Q 005625 564 VGTLSDRSKPIVFSMA-RLDH---VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (687) Q Consensus 564 ~g~l~~~~kPiIl~VG-RLdp---~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL 639 (687) .+...+..+++++... |... ..+...+.+++..+.+. .+.++|+...+.| . . -..+.+.++++ T Consensus 172 ~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p------~-~---~~~i~~~l~~~-- 238 (346) T PF02350_consen 172 SGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNP------R-G---SDIIIEKLKKY-- 238 (346) T ss_dssp HHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-H------H-H---HHHHHHHHTT--- T ss_pred HHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCc------h-H---HHHHHHHhccc-- Confidence 0111124556666554 3322 23455677777666554 5667776654321 1 1 12334444444 Q ss_pred CCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcC Q 005625 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQVY 673 (687) Q Consensus 640 ~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPS 673 (687) ++|++.. .++..+.-.+++.| ++.|-=| T Consensus 239 -~~v~~~~-~l~~~~~l~ll~~a----~~vvgdS 266 (346) T PF02350_consen 239 -DNVRLIE-PLGYEEYLSLLKNA----DLVVGDS 266 (346) T ss_dssp -TTEEEE-----HHHHHHHHHHE----SEEEESS T ss_pred -CCEEEEC-CCCHHHHHHHHhcc----eEEEEcC Confidence 3999988 47777777777765 6666544 No 125 >PLN02448 UDP-glycosyltransferase family protein Probab=81.33 E-value=17 Score=41.38 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=68.0 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhC--CCCCCCeEEEEeccCCCCCCCccccccccc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQ--GLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~--Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i 356 (687) .+|++++.- .-|.+.-.++|++.|.. . |+ .|+++|..... ..++.. T Consensus 11 ~hVvlvp~p-------------a~GHi~P~l~LA~~L~~--------~~~G~----~VT~~~t~~~~-------~~i~~~ 58 (459) T PLN02448 11 CHVVAMPYP-------------GRGHINPMMNLCKLLAS--------RKPDI----LITFVVTEEWL-------GLIGSD 58 (459) T ss_pred cEEEEECCc-------------ccccHHHHHHHHHHHHc--------CCCCc----EEEEEeCCchH-------hHhhcc Confidence 478888743 35777888999988876 7 99 99999763211 112221 Q ss_pred cCCCCeEEEEecCCCCccccccccccccchhhHHHHH---HHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcE Q 005625 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFT---EDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQ 433 (687) Q Consensus 357 ~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~---~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~ 433 (687) ....+++++.+|.+...+. . +..+++.++..+. ....+.+++.+..++|.|.++.... .|..+|+++|||. T Consensus 59 ~~~~gi~fv~lp~~~p~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~--wa~~vA~~lgIP~ 132 (459) T PLN02448 59 PKPDNIRFATIPNVIPSEL-V---RAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLF--WAVGVGNRRNIPV 132 (459) T ss_pred CCCCCEEEEECCCCCCCcc-c---cccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccH--HHHHHHHHhCCCe Confidence 1113678888875311111 0 0112333333222 2223333343334679998875543 5778899999997 Q ss_pred EE Q 005625 434 CT 435 (687) Q Consensus 434 V~ 435 (687) +. T Consensus 133 v~ 134 (459) T PLN02448 133 AS 134 (459) T ss_pred EE Confidence 64 No 126 >PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B .... Probab=73.23 E-value=5.6 Score=36.68 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=56.3 Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCC-CCcccccc Q 005625 300 DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFR-SEKGILRQ 378 (687) Q Consensus 300 dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~-~~~~~~~~ 378 (687) -|+|-+.-.+.++++|.+ +|| +|.+.|.. + .+......|.....++.. ... +. T Consensus 7 Gt~Ghv~P~lala~~L~~--------rGh----~V~~~~~~--~---------~~~~v~~~Gl~~~~~~~~~~~~---~~ 60 (139) T PF03033_consen 7 GTRGHVYPFLALARALRR--------RGH----EVRLATPP--D---------FRERVEAAGLEFVPIPGDSRLP---RS 60 (139) T ss_dssp SSHHHHHHHHHHHHHHHH--------TT-----EEEEEETG--G---------GHHHHHHTT-EEEESSSCGGGG---HH T ss_pred CChhHHHHHHHHHHHHhc--------cCC----eEEEeecc--c---------ceecccccCceEEEecCCcCcC---cc Confidence 478888888888888877 899 99988853 1 111112247777777665 111 00 Q ss_pred ccccccchhhHH--HHHHHHHHHHHHhc-------C--CCceEEEeCCCChhHHHHHHHHcCCCcEEEEecC Q 005625 379 WISRFDVWPYLE--TFTEDVGSEITAEL-------Q--GFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHA 439 (687) Q Consensus 379 ~isr~~iwp~Le--~f~~~~~~~L~~~~-------~--~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~Ha 439 (687) .-....++.... .....+.+.+.+.. . ..+|++.++. ...++..++.+++||.+.+... T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~vaE~~~iP~~~~~~~ 130 (139) T PF03033_consen 61 LEPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAP--LAFAAALVAEQLGIPGVANRLF 130 (139) T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHH--HHTHHHHHHHHHTS-EEEEESS T ss_pred cchhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhh--hcCccceeEhhhCchHHHHhhC Confidence 000001111110 11112222222210 1 2455554432 3446788899999999987664 No 127 >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A. Probab=71.57 E-value=10 Score=43.60 Aligned_cols=101 Identities=9% Similarity=0.033 Sum_probs=62.1 Q ss_pred CCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCC-CcEE Q 005625 566 TLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD-GQFR 644 (687) Q Consensus 566 ~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~-~~V~ 644 (687) ++.+.+..++.+..++ .|=-+..+++++++.+.-+++.|++..... .++ +.+.+.++++|+. +||. T Consensus 279 ~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~~~-----~~l~~~~~~~Gv~~~Ri~ 345 (468) T PF13844_consen 279 YGLPEDAVVFGSFNNL--FKISPETLDLWARILKAVPNSRLWLLRFPA------SGE-----ARLRRRFAAHGVDPDRII 345 (468) T ss_dssp GT--SSSEEEEE-S-G--GG--HHHHHHHHHHHHHSTTEEEEEEETST------THH-----HHHHHHHHHTTS-GGGEE T ss_pred cCCCCCceEEEecCcc--ccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------HHH-----HHHHHHHHHcCCChhhEE Confidence 3445555555555554 566788888998887777889998765431 122 4667888999996 8899 Q ss_pred EcCcccCcccHHHHHHHhhcCCcEEEEcCCC-CCchhhhccc Q 005625 645 WIAAQTNRARNGELYRYIADTKGAFVQVYVH-PIPLNFLPSY 685 (687) Q Consensus 645 flG~~l~~~dl~elYr~aad~~dVFVlPSl~-gFGLviLEa~ 685 (687) |.+ ..++++--..|+.+ ||+.=+-.| | |.|.+||+ T Consensus 346 f~~-~~~~~ehl~~~~~~----DI~LDT~p~nG-~TTt~dAL 381 (468) T PF13844_consen 346 FSP-VAPREEHLRRYQLA----DICLDTFPYNG-GTTTLDAL 381 (468) T ss_dssp EEE----HHHHHHHGGG-----SEEE--SSS---SHHHHHHH T ss_pred EcC-CCCHHHHHHHhhhC----CEEeeCCCCCC-cHHHHHHH Confidence 999 46665555556543 999988777 5 78888875 No 128 >PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane []. Probab=71.16 E-value=18 Score=35.95 Aligned_cols=115 Identities=24% Similarity=0.371 Sum_probs=59.2 Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccccc Q 005625 301 TGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWI 380 (687) Q Consensus 301 tGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~i 380 (687) .||.-...+.+.+++..+ ...++..++|...+.... .+ .++|+.... ...++.+|-... +.+.|. T Consensus 7 sGGHt~eml~L~~~~~~~----------~~~~~~~ivt~~d~~S~~-k~-~~~~~~~~~-~~~~~~~~r~r~--v~q~~~ 71 (170) T PF08660_consen 7 SGGHTAEMLRLLKALDND----------RYQPRTYIVTEGDKQSRS-KA-EQLEKSSSK-RHKILEIPRARE--VGQSYL 71 (170) T ss_pred CcHHHHHHHHHHHHhhhh----------cCCCcEEEEEcCCcccHH-HH-HHHHHhccc-cceeeccceEEE--echhhH Confidence 588877777777776332 234588888864322210 00 012221110 112333332110 111111 Q ss_pred ccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcC------CCcEEEE Q 005625 381 SRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKM------GITQCTI 436 (687) Q Consensus 381 sr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~l------gVP~V~T 436 (687) ..+|..+..+.. ....+.+ .+||+|.+|.+-.++...++++.+ |.++|++ T Consensus 72 --~~~~~~l~~~~~-~~~il~r---~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170) T PF08660_consen 72 --TSIFTTLRAFLQ-SLRILRR---ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170) T ss_pred --hhHHHHHHHHHH-HHHHHHH---hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE Confidence 123444444432 2233333 689999999987777777888877 8888875 No 129 >PLN02208 glycosyltransferase family protein Probab=63.87 E-value=1.1e+02 Score=34.90 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=62.4 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) .+||++..- .-|...-.+++|+.|+. +|+ +|+++|... .. ..++.... T Consensus 5 ~hvv~~P~p-------------aqGHi~P~l~LAk~La~--------~G~----~VT~vtt~~--~~-----~~i~~~~a 52 (442) T PLN02208 5 FHAFMFPWF-------------AFGHMIPFLHLANKLAE--------KGH----RVTFLLPKK--AQ-----KQLEHHNL 52 (442) T ss_pred CEEEEecCc-------------cccHHHHHHHHHHHHHh--------CCC----EEEEEeccc--hh-----hhhhcccC Confidence 368888743 25778889999999987 899 999998532 11 11221110 Q ss_pred -CCCeEEEEecCCCCccccccccccccchhhHHHH-------HHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCC Q 005625 359 -TEHTHILRVPFRSEKGILRQWISRFDVWPYLETF-------TEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMG 430 (687) Q Consensus 359 -~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f-------~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lg 430 (687) ...+++..+|+.+.+++-...-+...+-.++..+ ....++.+++ +.+||.|.+. .. + .+..+|+.+| T Consensus 53 ~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~--~~~~~cVV~D-~~-~-wa~~vA~e~g 127 (442) T PLN02208 53 FPDSIVFHPLTIPPVNGLPAGAETTSDIPISMDNLLSEALDLTRDQVEAAVR--ALRPDLIFFD-FA-Q-WIPEMAKEHM 127 (442) T ss_pred CCCceEEEEeCCCCccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEEC-Cc-H-hHHHHHHHhC Confidence 1145566665532111110000000111122222 1112222333 3478999888 33 3 5677788999 Q ss_pred CcEE Q 005625 431 ITQC 434 (687) Q Consensus 431 VP~V 434 (687) ||.+ T Consensus 128 iP~~ 131 (442) T PLN02208 128 IKSV 131 (442) T ss_pred CCEE Confidence 9975 No 130 >PLN00414 glycosyltransferase family protein Probab=57.34 E-value=2e+02 Score=33.02 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=28.7 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ 340 (687) .+||++.. | .-|...-.+++|+.|.. +|+ +|+++|.. T Consensus 5 ~HVvlvPf------------p-aqGHi~PmL~LAk~Las--------~G~----~VT~vtt~ 41 (446) T PLN00414 5 FHAFMYPW------------F-GFGHMIPYLHLANKLAE--------KGH----RVTFFLPK 41 (446) T ss_pred CEEEEecC------------c-ccchHHHHHHHHHHHHh--------CCC----EEEEEeCC Confidence 46777763 2 35778889999999887 899 99999853 No 131 >PLN02554 UDP-glycosyltransferase family protein Probab=54.38 E-value=1.8e+02 Score=33.54 Aligned_cols=127 Identities=9% Similarity=0.077 Sum_probs=65.4 Q ss_pred ccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEeccCCCCCCCccccccc Q 005625 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQG--LDISPKILIVTRLIPDAKGTTCNQRLE 354 (687) Q Consensus 277 ~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~G--h~~~~~V~VlTr~ip~~~g~~~~q~lE 354 (687) |.++||++..- .-|...-.+++|+.|+. +| . .|+++|.......--.-..... T Consensus 1 ~~~hvvl~P~p-------------aqGHi~P~l~LAk~La~--------~G~~~----~vT~v~t~~~~~~~~~~~~~~~ 55 (481) T PLN02554 1 MKIELVFIPSP-------------GIGHLRPTVELAKLLVD--------SDDRL----SITVIIIPSRSGDDASSSAYIA 55 (481) T ss_pred CceEEEEeCCc-------------chhhHHHHHHHHHHHHh--------CCCCE----EEEEEeCCCccchhhhhhhhhh Confidence 56789998743 25777888999999987 77 5 7888865321110000000011 Q ss_pred cccC--CCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhc------CCCc-eEEEeCCCChhHHHHHH Q 005625 355 RVSG--TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAEL------QGFP-DFIIGNYSDGNLVASLL 425 (687) Q Consensus 355 ~i~~--~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~------~~~P-DLIH~Hys~aglvA~ll 425 (687) .... .++++++.+|.+...+ ... ..++.++..+...+...+.+.. ..+| +.|.+-... ..|.-+ T Consensus 56 ~~~~~~~~~i~~~~lp~~~~~~---~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~--~wa~dv 128 (481) T PLN02554 56 SLSASSEDRLRYEVISAGDQPT---TED--PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFC--TSMIDV 128 (481) T ss_pred hcccCCCCCeEEEEcCCCCCCc---ccc--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcc--hhHHHH Confidence 1110 1258888888764211 000 1333334333333333332211 1234 556655333 256677 Q ss_pred HHcCCCcEEE Q 005625 426 AYKMGITQCT 435 (687) Q Consensus 426 Ar~lgVP~V~ 435 (687) |+++|||.+. T Consensus 129 A~~lgIP~~~ 138 (481) T PLN02554 129 ANEFGVPSYM 138 (481) T ss_pred HHHhCCCEEE Confidence 8899999643 No 132 >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Probab=53.29 E-value=59 Score=38.40 Aligned_cols=102 Identities=9% Similarity=0.054 Sum_probs=65.5 Q ss_pred CCCCCCEEEEEecCCcCCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCC-CCcEEEc Q 005625 568 SDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL-DGQFRWI 646 (687) Q Consensus 568 ~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL-~~~V~fl 646 (687) .+++..++++.++. .|=...++.-+.++.+.-++.-|+|.||+.+ + .....+++++++.|+ .++.+|. T Consensus 426 lp~~avVf~c~~n~--~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-------~--~~~~~l~~la~~~Gv~~eRL~f~ 494 (620) T COG3914 426 LPEDAVVFCCFNNY--FKITPEVFALWMQILSAVPNSVLLLKAGGDD-------A--EINARLRDLAEREGVDSERLRFL 494 (620) T ss_pred CCCCeEEEEecCCc--ccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-------H--HHHHHHHHHHHHcCCChhheeec Confidence 34454455555543 4444455554444544457777888877522 2 245788899999999 4899999 Q ss_pred CcccCcccHHHHHHHhhcCCcEEEEcCCCCCchhhhccc Q 005625 647 AAQTNRARNGELYRYIADTKGAFVQVYVHPIPLNFLPSY 685 (687) Q Consensus 647 G~~l~~~dl~elYr~aad~~dVFVlPSl~gFGLviLEa~ 685 (687) +. .++++--+-|..| |+|.=.=-||=+-|.+||+ T Consensus 495 p~-~~~~~h~a~~~iA----DlvLDTyPY~g~TTa~daL 528 (620) T COG3914 495 PP-APNEDHRARYGIA----DLVLDTYPYGGHTTASDAL 528 (620) T ss_pred CC-CCCHHHHHhhchh----heeeecccCCCccchHHHH Confidence 94 7778888888865 8886554443355666654 No 133 >PLN03007 UDP-glucosyltransferase family protein Probab=53.10 E-value=1.8e+02 Score=33.46 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=29.5 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ 340 (687) .+||+++.-| -|.+.-.+++|+.|.. +|+ +|+++|.. T Consensus 6 ~hVvlvp~pa-------------~GHi~P~L~LAk~L~~--------rG~----~VT~vtt~ 42 (482) T PLN03007 6 LHILFFPFMA-------------HGHMIPTLDMAKLFSS--------RGA----KSTILTTP 42 (482) T ss_pred cEEEEECCCc-------------cccHHHHHHHHHHHHh--------CCC----EEEEEECC Confidence 4789988532 5777888999998887 899 99999864 No 134 >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process Probab=48.74 E-value=3.3e+02 Score=30.59 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=49.1 Q ss_pred CCCCCCEEEEE-e-cCCc-CCCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEE Q 005625 568 SDRSKPIVFSM-A-RLDH-VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (687) Q Consensus 568 ~~~~kPiIl~V-G-RLdp-~Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~ 644 (687) .++++|+|..+ | |-.. .+++..++++..++.+..++.++++.... .... +.+++...+++..-.+. T Consensus 180 l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~--------~~~~---~~i~~~~~~~~~~~~~~ 248 (373) T PF02684_consen 180 LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP--------EVHE---ELIEEILAEYPPDVSIV 248 (373) T ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC--------HHHH---HHHHHHHHhhCCCCeEE Confidence 35677765444 4 6655 44558889999988877777777654322 1111 22445556666554554 Q ss_pred EcCcccCcccHHHHHHHhhcCCcEEEEcC Q 005625 645 WIAAQTNRARNGELYRYIADTKGAFVQVY 673 (687) Q Consensus 645 flG~~l~~~dl~elYr~aad~~dVFVlPS 673 (687) ... .+--++++.+ |+-+..| T Consensus 249 ~~~-----~~~~~~m~~a----d~al~~S 268 (373) T PF02684_consen 249 IIE-----GESYDAMAAA----DAALAAS 268 (373) T ss_pred EcC-----CchHHHHHhC----cchhhcC Confidence 442 1234555533 7776666 No 135 >PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A .... Probab=47.50 E-value=1.3e+02 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=25.7 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLI 341 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~i 341 (687) ||||+...-|+.+ ..+..|+++|.+ .|| +|.|+.... T Consensus 1 M~ILlTNDDGi~a--------------~Gi~aL~~~L~~--------~g~----~V~VvAP~~ 37 (196) T PF01975_consen 1 MRILLTNDDGIDA--------------PGIRALAKALSA--------LGH----DVVVVAPDS 37 (196) T ss_dssp SEEEEE-SS-TTS--------------HHHHHHHHHHTT--------TSS----EEEEEEESS T ss_pred CeEEEEcCCCCCC--------------HHHHHHHHHHHh--------cCC----eEEEEeCCC Confidence 6999999877532 456777777744 689 999998654 No 136 >KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism] Probab=46.26 E-value=60 Score=39.58 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=86.3 Q ss_pred cceEeeCCCCCCCCCCCChHHHhhhhhhhhhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 520 KFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 520 K~~VIpnGVD~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) .+.+.|-|+|...|........- ..-..+++. . ..++.+|+-+-|+|..||+..=+.||.+... T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~-~~~~~ei~~-------------~--~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~ 303 (732) T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYV-GSKGMEIKE-------------P--FKGKKLILGVDRLDSIKGIQLKLLAFEQFLE 303 (732) T ss_pred eeeecccccchHHhhccccchhH-HHHHHHHhh-------------h--ccCCceEecccccccccCchHHHHHHHHHHH Confidence 67888999998877532211100 000122321 1 1467899999999999999887788876643 Q ss_pred ----cCCCceEEEEEccCCCCCCCCh---HHHHHHHHHHHHHHHc-C--CCCcEEEcCcccCcccHHHHHHHhhcCCcEE Q 005625 600 ----LRELVNLVVVAGYIDVNKSKDR---EEIAEIEKMHELMKTY-K--LDGQFRWIAAQTNRARNGELYRYIADTKGAF 669 (687) Q Consensus 600 ----l~~~~nLVLVGG~~d~~~s~d~---ee~~el~~L~~li~el-g--L~~~V~flG~~l~~~dl~elYr~aad~~dVF 669 (687) .++.+.++.|.-.. .+... +.+..+......+++- + ....|+++--.++..++-++|..+ |++ T Consensus 304 ~~pe~~~kVvliqi~~~~---~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Va----ev~ 376 (732) T KOG1050|consen 304 EYPEWIDKVVLIQIENPK---RTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVA----EVC 376 (732) T ss_pred hChhhhceEEEEEEecCC---cccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhh----hhe Confidence 34455555554221 11112 1233333333333332 2 235676665468888999999865 899 Q ss_pred EEcCCC-CCchhhhcc Q 005625 670 VQVYVH-PIPLNFLPS 684 (687) Q Consensus 670 VlPSl~-gFGLviLEa 684 (687) ...|+. |..++.+|. T Consensus 377 ~v~s~rdGmnl~~~e~ 392 (732) T KOG1050|consen 377 PVTSWRDGMNLVFLEY 392 (732) T ss_pred eecccccccchhhhHH Confidence 999999 999999874 No 137 >PLN02173 UDP-glucosyl transferase family protein Probab=43.34 E-value=3.9e+02 Score=30.72 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=64.7 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) .+||++..- .-|...-.+++|+.|+. +|+ .|+++|....-. .+.. .. T Consensus 6 ~hvv~~P~p-------------aqGHi~P~l~lAk~La~--------~G~----~vT~v~t~~~~~-------~~~~-~~ 52 (449) T PLN02173 6 GHVLAVPFP-------------SQGHITPIRQFCKRLHS--------KGF----KTTHTLTTFIFN-------TIHL-DP 52 (449) T ss_pred cEEEEecCc-------------ccccHHHHHHHHHHHHc--------CCC----EEEEEECCchhh-------hccc-CC Confidence 468888743 25778889999999877 799 999997642111 1110 01 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHH---HHHHHHHHHhc--CCCc-eEEEeCCCChhHHHHHHHHcCCCc Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFT---EDVGSEITAEL--QGFP-DFIIGNYSDGNLVASLLAYKMGIT 432 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~---~~~~~~L~~~~--~~~P-DLIH~Hys~aglvA~llAr~lgVP 432 (687) .++++++.+|.+-..+-... ..++..++..+. ....+.+++.. ..+| +.|.+..... .+.-+|+++||| T Consensus 53 ~~~i~~~~ipdglp~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~--Wa~dVA~elgIP 127 (449) T PLN02173 53 SSPISIATISDGYDQGGFSS---AGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMP--WALDLAREFGLA 127 (449) T ss_pred CCCEEEEEcCCCCCCccccc---ccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcch--hHHHHHHHhCCC Confidence 13578888876321100000 012233433322 11222223322 2356 8888765443 456668899999 Q ss_pred EEE Q 005625 433 QCT 435 (687) Q Consensus 433 ~V~ 435 (687) .+. T Consensus 128 ~v~ 130 (449) T PLN02173 128 AAP 130 (449) T ss_pred EEE Confidence 754 No 138 >PLN02992 coniferyl-alcohol glucosyltransferase Probab=43.32 E-value=3.1e+02 Score=31.80 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=63.1 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALE-NEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~-~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) .||++..- .-|.+.-.+++|+.|. . .|+ +|+++|...... ...... +. T Consensus 7 HVvl~P~p-------------aqGHi~P~l~LAk~La~~--------~g~----~vT~v~t~~n~~---~~~~~~--~~- 55 (481) T PLN02992 7 HAAMFSSP-------------GMGHVIPVIELGKRLSAN--------HGF----HVTVFVLETDAA---SAQSKF--LN- 55 (481) T ss_pred EEEEeCCc-------------ccchHHHHHHHHHHHHhC--------CCc----EEEEEeCCCchh---hhhhcc--cc- Confidence 67777643 2577788899999887 4 688 999997642110 000010 11 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHHH---HHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTE---DVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~---~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) ..+++++.+|+....+.-+. ..+....+..+.. .-.+.++++...+|+.|.+-.... .+.-+|+++|||.++ T Consensus 56 ~~~i~~~~lp~p~~~glp~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~--Wa~dVA~elgIP~v~ 130 (481) T PLN02992 56 STGVDIVGLPSPDISGLVDP---SAHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGT--DALCLGGEFNMLTYI 130 (481) T ss_pred CCCceEEECCCccccCCCCC---CccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcch--hHHHHHHHcCCCEEE Confidence 12578888886322111000 0011111211111 222233343334688887766542 466778899999654 No 139 >COG4195 Phage-related replication protein [General function prediction only] Probab=42.63 E-value=20 Score=36.39 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=38.0 Q ss_pred CcHHHHHHHHHHHHHhhcCCCcchHhHHhcCCCccceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH Q 005625 244 DTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENE 318 (687) Q Consensus 244 ~~~~r~~e~~~~l~~~l~~p~~~~le~f~~r~p~~~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~ 318 (687) ..+++.-...+-|.+....-|+..+++ .+ .-.+|+|++||| ||.+--+-||++++.++ T Consensus 6 ~~~~d~y~~f~~Lse~esp~dy~ii~~--e~--~~S~v~ilapHG-------------G~IE~GvSELare~s~e 63 (208) T COG4195 6 ISAEDEYSNFASLSENESPVDYGIIYT--EK--LGSRVLILAPHG-------------GGIEGGVSELAREFSDE 63 (208) T ss_pred CCccccccCHHHHHhccCcccCCeEEe--ec--cCceEEEEeccC-------------CccCccHHHHHHHHHHH Confidence 335555556667777766455555543 11 123799999997 56655578999998875 No 140 >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. Probab=41.65 E-value=36 Score=40.45 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=25.9 Q ss_pred HHHHHHcCCC----Cc--EEEcCcccCccc---HHHHHHHhhcCCcEEEEcCCC-CCchhhhccc Q 005625 631 HELMKTYKLD----GQ--FRWIAAQTNRAR---NGELYRYIADTKGAFVQVYVH-PIPLNFLPSY 685 (687) Q Consensus 631 ~~li~elgL~----~~--V~flG~~l~~~d---l~elYr~aad~~dVFVlPSl~-gFGLviLEa~ 685 (687) .+.+++.||. ++ |+|..-.++..+ .-.+|.+.. +.|+-|+||+| |+|.|.+||. T Consensus 427 Ln~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~-GcdLgvFPSYYEPWGYTPlE~~ 490 (633) T PF05693_consen 427 LNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVR-GCDLGVFPSYYEPWGYTPLECT 490 (633) T ss_dssp HHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHH-HSSEEEE--SSBSS-HHHHHHH T ss_pred HHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhc-cCceeeeccccccccCChHHHh Confidence 4456666664 44 555431122111 122444332 34999999999 9999999984 No 141 >PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B. Probab=41.60 E-value=1.1e+02 Score=30.72 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=27.8 Q ss_pred CCceEEEeCCC--ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhhhcccccccchhHHHHHHHhcCCEEEecCH Q 005625 406 GFPDFIIGNYS--DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTY 483 (687) Q Consensus 406 ~~PDLIH~Hys--~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~~~~~y~~s~rf~aE~iam~~AD~IItsS~ 483 (687) .+||++..--. -.|++ ..+++.|||++...=-+...... . |.. + .. .-+..++.-|.|.+.|. T Consensus 94 ~~P~~~i~~EtElWPnll--~~a~~~~ip~~LvNarls~~s~~--~--~~~------~-~~--~~r~~l~~f~~i~aqs~ 158 (186) T PF04413_consen 94 WRPDLLIWVETELWPNLL--REAKRRGIPVVLVNARLSERSFR--R--YRR------F-PF--LFRPLLSRFDRILAQSE 158 (186) T ss_dssp H--SEEEEES----HHHH--HH-----S-EEEEEE-------------------------H--HHHHHGGG-SEEEESSH T ss_pred hCCCEEEEEccccCHHHH--HHHhhcCCCEEEEeeeeccccch--h--hhh------h-HH--HHHHHHHhCCEEEECCH Confidence 57998887654 34553 33567899988765544221110 1 111 1 11 12356788899999887 Q ss_pred HHHh Q 005625 484 QEIA 487 (687) Q Consensus 484 qEi~ 487 (687) .+.. T Consensus 159 ~da~ 162 (186) T PF04413_consen 159 ADAE 162 (186) T ss_dssp HHHH T ss_pred HHHH Confidence 6654 No 142 >COG1647 Esterase/lipase [General function prediction only] Probab=41.24 E-value=2.9e+02 Score=29.27 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEe Q 005625 392 FTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 437 (687) Q Consensus 392 f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~ 437 (687) .+.+..+.+.. ++-..|..+-.|+||+.|..+|....++-+++. T Consensus 71 ~v~d~Y~~L~~--~gy~eI~v~GlSmGGv~alkla~~~p~K~iv~m 114 (243) T COG1647 71 DVEDGYRDLKE--AGYDEIAVVGLSMGGVFALKLAYHYPPKKIVPM 114 (243) T ss_pred HHHHHHHHHHH--cCCCeEEEEeecchhHHHHHHHhhCCccceeee Confidence 34455566654 355668888889999999999999887655443 No 143 >PLN02562 UDP-glycosyltransferase Probab=40.62 E-value=2e+02 Score=32.82 Aligned_cols=116 Identities=11% Similarity=0.161 Sum_probs=63.5 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCcccccccc-ccC Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER-VSG 358 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~-i~~ 358 (687) +||++..- .-|...-.+++|+.|.. .|+ +|+++|..... ..++. +.. T Consensus 8 HVVlvPfP-------------aqGHi~PmL~LAk~Las--------~G~----~VT~vtt~~~~-------~~~~~~~~~ 55 (448) T PLN02562 8 KIILVPYP-------------AQGHVTPMLKLASAFLS--------RGF----EPVVITPEFIH-------RRISATLDP 55 (448) T ss_pred EEEEEcCc-------------cccCHHHHHHHHHHHHh--------CCC----EEEEEeCcchh-------hhhhhccCC Confidence 68888743 25778889999999987 799 99999864211 11111 111 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHH---HHHHHHHHHhcC--CCceEEEeCCCChhHHHHHHHHcCCCcE Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFT---EDVGSEITAELQ--GFPDFIIGNYSDGNLVASLLAYKMGITQ 433 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~---~~~~~~L~~~~~--~~PDLIH~Hys~aglvA~llAr~lgVP~ 433 (687) ..+++++.+|.+...+. + .+++.+...+. ..-...+++.+. ..++.|.+.... ..+.-+|+++|||. T Consensus 56 ~~~i~~v~lp~g~~~~~-----~-~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~--~w~~~vA~~~giP~ 127 (448) T PLN02562 56 KLGITFMSISDGQDDDP-----P-RDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLA--SWAIGVADRCGVPV 127 (448) T ss_pred CCCEEEEECCCCCCCCc-----c-ccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCcc--HhHHHHHHHhCCCE Confidence 13578888876532111 1 12222222222 112222333322 223677766544 24566788999997 Q ss_pred EE Q 005625 434 CT 435 (687) Q Consensus 434 V~ 435 (687) ++ T Consensus 128 ~~ 129 (448) T PLN02562 128 AG 129 (448) T ss_pred EE Confidence 54 No 144 >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein Probab=39.85 E-value=4.6e+02 Score=30.29 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=28.9 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ 340 (687) .+||++..- .-|...-.+++|+.|+. +|+ +|+++|.. T Consensus 10 ~HVvl~Pfp-------------aqGHi~P~l~LAk~La~--------~G~----~VTfv~T~ 46 (477) T PLN02863 10 THVLVFPFP-------------AQGHMIPLLDLTHRLAL--------RGL----TITVLVTP 46 (477) T ss_pred CEEEEecCc-------------ccchHHHHHHHHHHHHh--------CCC----EEEEEeCC Confidence 478888743 36777788999999987 798 99998764 No 145 >COG3171 Uncharacterized protein conserved in bacteria [Function unknown] Probab=37.49 E-value=28 Score=32.57 Aligned_cols=31 Identities=35% Similarity=0.601 Sum_probs=26.9 Q ss_pred HhhhcCCcccc----CCcHHHHHHHHHHHHHhhcC Q 005625 232 VLQGMGFEKGW----GDTAEHVLEMMHLLLDILQA 262 (687) Q Consensus 232 ~~~~~g~e~gw----g~~~~r~~e~~~~l~~~l~~ 262 (687) +||+|||...| |.+|+-+-|++..+.|-+-+ T Consensus 25 EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~ 59 (119) T COG3171 25 EFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIA 59 (119) T ss_pred HHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHc Confidence 59999999999 77799999999888776665 No 146 >PLN02670 transferase, transferring glycosyl groups Probab=36.14 E-value=4.9e+02 Score=30.13 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=63.2 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccc--c Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV--S 357 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i--~ 357 (687) +||++..- .-|...-.+++|+.|+. .|+ .|+++|...... ++... . T Consensus 8 HVvl~P~p-------------aqGHi~P~l~LAk~La~--------~G~----~vT~v~t~~n~~-------~~~~~~~~ 55 (472) T PLN02670 8 HVAMFPWL-------------AMGHLIPFLRLSKLLAQ--------KGH----KISFISTPRNLH-------RLPKIPSQ 55 (472) T ss_pred EEEEeCCh-------------hhhHHHHHHHHHHHHHh--------CCC----EEEEEeCCchHH-------hhhhcccc Confidence 68888743 24777888999999877 798 999987542110 11110 0 Q ss_pred CCCCeEEEEecCCCCccccccccccccc----hhhHHHHH---HHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCC Q 005625 358 GTEHTHILRVPFRSEKGILRQWISRFDV----WPYLETFT---EDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMG 430 (687) Q Consensus 358 ~~~~v~IlRvP~~~~~~~~~~~isr~~i----wp~Le~f~---~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lg 430 (687) ...+++++.+|+....++-+.--+..++ +.++.... ....+++++ +.+|+.|.+....+ .+.-+|+++| T Consensus 56 ~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~cvI~D~f~~--wa~~vA~~~g 131 (472) T PLN02670 56 LSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLE--TSKPDWIIYDYASH--WLPSIAAELG 131 (472) T ss_pred CCCCeeEEECCCCccCCCCCCcccccccchhhHHHHHHHHHHhHHHHHHHHH--hCCCcEEEECCcch--hHHHHHHHcC Confidence 1125788888864321211000000111 12222211 122233333 23688888765442 3566688899 Q ss_pred CcEEE Q 005625 431 ITQCT 435 (687) Q Consensus 431 VP~V~ 435 (687) ||.++ T Consensus 132 IP~~~ 136 (472) T PLN02670 132 ISKAF 136 (472) T ss_pred CCEEE Confidence 99653 No 147 >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown. Probab=36.12 E-value=4.6e+02 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=27.2 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCC--cEEEEec Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGI--TQCTIAH 438 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgV--P~V~T~H 438 (687) ...||||++-...+..++..+++..|- +.|++.+ T Consensus 55 ~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~ 90 (311) T PF06258_consen 55 PPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMD 90 (311) T ss_pred CCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcC Confidence 357999999999888889999988876 5665544 No 148 >PLN02764 glycosyltransferase family protein Probab=35.49 E-value=4.2e+02 Score=30.59 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.9 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ 340 (687) +.||++..- .-|...-.+++|+.|+. +|+ .|+++|.. T Consensus 6 ~Hvvl~P~p-------------aqGHi~P~l~LAk~La~--------~g~----~vT~~tt~ 42 (453) T PLN02764 6 FHVLMYPWF-------------ATGHMTPFLFLANKLAE--------KGH----TVTFLLPK 42 (453) T ss_pred cEEEEECCc-------------ccccHHHHHHHHHHHHh--------CCC----EEEEEeCc Confidence 378888743 24777888999999987 798 99999864 No 149 >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] Probab=35.44 E-value=7.1e+02 Score=28.27 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=96.2 Q ss_pred CCCceEEEeCCC-ChhHHHHHHHHcCCCcEEEEecCCccccCCCCchhhhh-hcccccccchhHHHHHHHhcCCEEEecC Q 005625 405 QGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKK-FDEKYHFSCQFTADLIAMNNADFIITST 482 (687) Q Consensus 405 ~~~PDLIH~Hys-~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s~l~w~~-~~~~y~~s~rf~aE~iam~~AD~IItsS 482 (687) ..+||+|-.|.- ...++|+++|...+||+++.--|+-. .+.+|.+ ++ + .+.-.-||.-.|+| T Consensus 90 ~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt-----~~~~~PEE~N------R-----~l~~~~S~~hfapt 153 (383) T COG0381 90 EEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT-----GDLYFPEEIN------R-----RLTSHLSDLHFAPT 153 (383) T ss_pred hhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc-----CCCCCcHHHH------H-----HHHHHhhhhhcCCh Confidence 478998888753 56677899999999999988777621 1222322 11 1 12334566667777 Q ss_pred HHHHhccccccccccccccccccccceeecccccCCCcceEeeCCC-CCCCCCCCChHHHhhhhhhhhhhhhhcCCCccc Q 005625 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEKQKRLTALHGSIEQLLFDPEQND 561 (687) Q Consensus 483 ~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGV-D~~~F~p~~~~~~r~~~l~~~i~~ll~~~~~~~ 561 (687) ..... + |.+ . |+...++.|+-|-+ |.-.+.. ..+.+ +.+ T Consensus 154 e~ar~--------n----------Ll~--E--G~~~~~IfvtGnt~iDal~~~~------------~~~~~------~~~ 193 (383) T COG0381 154 EIARK--------N----------LLR--E--GVPEKRIFVTGNTVIDALLNTR------------DRVLE------DSK 193 (383) T ss_pred HHHHH--------H----------HHH--c--CCCccceEEeCChHHHHHHHHH------------hhhcc------chh Confidence 54432 1 111 0 22223688877643 3111110 00000 000 Q ss_pred ccccCCCCCCCCEEEEEe-cCCcC-CCHHHHHHHHhhccccCCCceEEEEEccCCCCCCCChHHHHHHHHHHHHH-HHcC Q 005625 562 EHVGTLSDRSKPIVFSMA-RLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELM-KTYK 638 (687) Q Consensus 562 ~~~g~l~~~~kPiIl~VG-RLdp~-Kni~~LVeAfa~l~~l~~~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li-~elg 638 (687) .....+.+.++.+|+..+ |-.-. +++..+++|+.++.+..++..++.- -. + . ..+++.. +.++ T Consensus 194 ~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp-~H-~------~------~~v~e~~~~~L~ 259 (383) T COG0381 194 ILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYP-VH-P------R------PRVRELVLKRLK 259 (383) T ss_pred hHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEe-CC-C------C------hhhhHHHHHHhC Confidence 000002345556666655 55443 8899999999988776544443322 12 1 1 1223333 4556 Q ss_pred CCCcEEEcCcccCcccHHHHHH Q 005625 639 LDGQFRWIAAQTNRARNGELYR 660 (687) Q Consensus 639 L~~~V~flG~~l~~~dl~elYr 660 (687) -.++|.++. .+...+.-.+.. T Consensus 260 ~~~~v~li~-pl~~~~f~~L~~ 280 (383) T COG0381 260 NVERVKLID-PLGYLDFHNLMK 280 (383) T ss_pred CCCcEEEeC-CcchHHHHHHHH Confidence 566788876 355555555544 No 150 >PLN03015 UDP-glucosyl transferase Probab=34.00 E-value=7.1e+02 Score=28.89 Aligned_cols=117 Identities=12% Similarity=0.201 Sum_probs=58.2 Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccccc Q 005625 302 GGQVVYILDQVRALENEMLLRIKRQ-GLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWI 380 (687) Q Consensus 302 GGqvvyVldlarAL~~~l~~~l~~~-Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~i 380 (687) -|...-.+++|+.|+. . |. .|+++|....... ..-...........+++++.+|+....++.+. T Consensus 14 qGHi~P~l~LAk~La~--------~~g~----~vT~v~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~-- 78 (470) T PLN03015 14 LGHLIPILELGNRLSS--------VLNI----HVTILAVTSGSSS-PTETEAIHAAAARTTCQITEIPSVDVDNLVEP-- 78 (470) T ss_pred cccHHHHHHHHHHHHh--------CCCC----eEEEEECCCchhh-hccccccccccCCCceEEEECCCCccccCCCC-- Confidence 4777889999999976 4 77 8999865422210 00000011110001588888886543221000 Q ss_pred ccccchhhHHHH----HHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEe Q 005625 381 SRFDVWPYLETF----TEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 437 (687) Q Consensus 381 sr~~iwp~Le~f----~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~ 437 (687) .. +.+..+..+ ...+.+.| +.+..+|+.|.+-... ..+.-+|+++|||.++.+ T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~ciV~D~f~--~w~~~vA~~lgIP~~~~f 135 (470) T PLN03015 79 DA-TIFTKMVVKMRAMKPAVRDAV-KSMKRKPTVMIVDFFG--TALMSIADDVGVTAKYVY 135 (470) T ss_pred Cc-cHHHHHHHHHHhchHHHHHHH-HhcCCCCeEEEEcCCc--HHHHHHHHHcCCCEEEEE Confidence 00 222222111 12222223 3333467877766544 245667889999954433 No 151 >PRK12560 adenine phosphoribosyltransferase; Provisional Probab=33.99 E-value=1.1e+02 Score=30.83 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=26.8 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) ..++|+|.|-...+-..|..+|..+++|+++ T Consensus 49 ~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~ 79 (187) T PRK12560 49 DKDIDKIVTEEDKGAPLATPVSLLSGKPLAM 79 (187) T ss_pred CCCCCEEEEEccccHHHHHHHHHhhCCCEEE Confidence 5689999998877778899999999999865 No 152 >PRK12342 hypothetical protein; Provisional Probab=32.46 E-value=1.4e+02 Score=31.67 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=27.8 Q ss_pred CceEEEeCC----CChhHHHHHHHHcCCCcEEEEecCC Q 005625 407 FPDFIIGNY----SDGNLVASLLAYKMGITQCTIAHAL 440 (687) Q Consensus 407 ~PDLIH~Hy----s~aglvA~llAr~lgVP~V~T~HaL 440 (687) .||||.|-- .+.+.++..+|..+|+|+++-+-.+ T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~ 146 (254) T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKI 146 (254) T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEE Confidence 599999762 3568899999999999999877654 No 153 >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional Probab=32.05 E-value=3.8e+02 Score=31.19 Aligned_cols=30 Identities=7% Similarity=-0.069 Sum_probs=21.5 Q ss_pred CCCceEEEeCCCChhHHHHHHHHcC-CCcEEEE Q 005625 405 QGFPDFIIGNYSDGNLVASLLAYKM-GITQCTI 436 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr~l-gVP~V~T 436 (687) ..++|+|.+-... ..+..+++.+ ++|.|.+ T Consensus 134 ~~kFDlvi~e~~~--~c~~~la~~~~~~p~i~~ 164 (507) T PHA03392 134 NNKFDLLVTEAFL--DYPLVFSHLFGDAPVIQI 164 (507) T ss_pred CCceeEEEecccc--hhHHHHHHHhCCCCEEEE Confidence 4579999998553 3445578889 9997643 No 154 >PLN02534 UDP-glycosyltransferase Probab=28.32 E-value=8.8e+02 Score=28.24 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=28.1 Q ss_pred eEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecc Q 005625 280 NVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (687) Q Consensus 280 rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ 340 (687) +||++..- .-|...-.+++|+.|+. +|+ .|+++|.. T Consensus 10 Hvv~vPfp-------------aqGHi~P~l~LAk~La~--------~G~----~vT~v~t~ 45 (491) T PLN02534 10 HFVLIPLM-------------AQGHMIPMIDMARLLAE--------RGV----IVSLVTTP 45 (491) T ss_pred EEEEECCC-------------CcchHHHHHHHHHHHHh--------CCC----eEEEEECC Confidence 67777632 25778889999999887 799 99999764 No 155 >PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A. Probab=28.29 E-value=48 Score=30.03 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHhhcCCCcchHhHHhcCCC Q 005625 247 EHVLEMMHLLLDILQAPDPSTLEKFLGRLP 276 (687) Q Consensus 247 ~r~~e~~~~l~~~l~~p~~~~le~f~~r~p 276 (687) .|.+|.+.-|.|+++.||-+.|+.|++|.. T Consensus 24 dkFldSf~el~dv~~~~d~DelmdFIsryA 53 (110) T PF11513_consen 24 DKFLDSFKELIDVITSPDIDELMDFISRYA 53 (110) T ss_dssp HHHHHHHHHHHHHTTS--CCHHHHHHHHH- T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHhh Confidence 588999999999999999999999999864 No 156 >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. Probab=28.09 E-value=1.3e+02 Score=30.44 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=25.7 Q ss_pred eEEEeCCCChhHHHHHHHHcCCCcEEEEecCC Q 005625 409 DFIIGNYSDGNLVASLLAYKMGITQCTIAHAL 440 (687) Q Consensus 409 DLIH~Hys~aglvA~llAr~lgVP~V~T~HaL 440 (687) .++.|+ |.||+.|.++|.+.++|.|...=++ T Consensus 61 ~~liGS-SlGG~~A~~La~~~~~~avLiNPav 91 (187) T PF05728_consen 61 VVLIGS-SLGGFYATYLAERYGLPAVLINPAV 91 (187) T ss_pred eEEEEE-ChHHHHHHHHHHHhCCCEEEEcCCC Confidence 366665 7999999999999999998886655 No 157 >PRK13932 stationary phase survival protein SurE; Provisional Probab=27.70 E-value=7.8e+02 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=21.1 Q ss_pred CCCceEEEeC------C----CChhHH-HHHHHHcCCCcEEEEe Q 005625 405 QGFPDFIIGN------Y----SDGNLV-ASLLAYKMGITQCTIA 437 (687) Q Consensus 405 ~~~PDLIH~H------y----s~aglv-A~llAr~lgVP~V~T~ 437 (687) ..+||+|.+- . ..+|.| |++-|...|||-+-.- T Consensus 89 ~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S 132 (257) T PRK13932 89 PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFS 132 (257) T ss_pred CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEE Confidence 4689999853 1 123444 4455778899987553 No 158 >PLN02210 UDP-glucosyl transferase Probab=27.29 E-value=4.8e+02 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.8 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHH--HHHHHHHHHhCCCCCCCeEEEEecc Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRAL--ENEMLLRIKRQGLDISPKILIVTRL 340 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL--~~~l~~~l~~~Gh~~~~~V~VlTr~ 340 (687) .+||++..= .-|.+.-.+++|+.| .. +|+ +|+++|.. T Consensus 9 ~hvv~~P~p-------------a~GHi~P~l~La~~L~L~~--------~G~----~VT~v~t~ 47 (456) T PLN02210 9 THVLMVTLA-------------FQGHINPMLKLAKHLSLSS--------KNL----HFTLATTE 47 (456) T ss_pred CEEEEeCCc-------------ccccHHHHHHHHHHHHhhc--------CCc----EEEEEecc Confidence 478888632 357788889999984 45 799 99999764 No 159 >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein Probab=25.97 E-value=1e+03 Score=27.35 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=62.2 Q ss_pred ceEEEEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccC Q 005625 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (687) Q Consensus 279 ~rIliiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~ 358 (687) ..||++..- .-|...-.+++|+.|+. .|+ .|+++|...... +.. .. T Consensus 8 ~HVvlvPfp-------------aqGHi~P~l~LAk~La~--------~G~----~VT~v~T~~n~~------~~~---~~ 53 (451) T PLN02410 8 RRVVLVPVP-------------AQGHISPMMQLAKTLHL--------KGF----SITIAQTKFNYF------SPS---DD 53 (451) T ss_pred CEEEEECCC-------------ccccHHHHHHHHHHHHc--------CCC----EEEEEeCccccc------ccc---cC Confidence 478888743 25777888999999877 798 999987642111 111 11 Q ss_pred CCCeEEEEecCCCCccccccccccccchhhHHHHH----HHHHHHHHHhc----CCCceEEEeCCCChhHHHHHHHHcCC Q 005625 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFT----EDVGSEITAEL----QGFPDFIIGNYSDGNLVASLLAYKMG 430 (687) Q Consensus 359 ~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~----~~~~~~L~~~~----~~~PDLIH~Hys~aglvA~llAr~lg 430 (687) ..+++...+|.+-..+-.. ....+.++..+. ..+...+ +.+ ..+|+.|.+....+ .+.-+|+++| T Consensus 54 ~~~i~~~~ip~glp~~~~~----~~~~~~~~~~~~~~~~~~~~~~L-~~l~~~~~~p~~cVI~D~f~~--Wa~dvA~~lg 126 (451) T PLN02410 54 FTDFQFVTIPESLPESDFK----NLGPIEFLHKLNKECQVSFKDCL-GQLVLQQGNEIACVVYDEFMY--FAEAAAKEFK 126 (451) T ss_pred CCCeEEEeCCCCCCccccc----ccCHHHHHHHHHHHhHHHHHHHH-HHHHhccCCCcEEEEECCcch--HHHHHHHHcC Confidence 1256777777532110000 011223333222 1122222 221 23468888765542 4566788899 Q ss_pred CcEEE Q 005625 431 ITQCT 435 (687) Q Consensus 431 VP~V~ 435 (687) ||.+. T Consensus 127 IP~v~ 131 (451) T PLN02410 127 LPNVI 131 (451) T ss_pred CCEEE Confidence 99654 No 160 >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Probab=25.91 E-value=98 Score=36.06 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=57.9 Q ss_pred HHHHhcCCEEEecCHHHHhccccccccccccccccccccceeecccccCCCcceEeeCCCCCCCCCCCChHHHhhhhhhh Q 005625 469 LIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHG 548 (687) Q Consensus 469 ~iam~~AD~IItsS~qEi~~~~~~v~qyes~~~f~lp~Lyrvv~gi~v~~pK~~VIpnGVD~~~F~p~~~~~~r~~~l~~ 548 (687) .-....+|.++++|+--.. ++.. +++.| + ..++.+.++++|.+.+.+....... +++. T Consensus 204 ~e~~~~~~~~~~ns~~~~~-------~f~~----~~~~L-------~--~~d~~~~y~ei~~s~~~~~~~~~~~--~~~~ 261 (495) T KOG0853|consen 204 EETTGLAWKILVNSYFTKR-------QFKA----TFVSL-------S--NSDITSTYPEIDGSWFTYGQYESHL--ELRL 261 (495) T ss_pred hhhhhccceEecchhhhhh-------hhhh----hhhhc-------C--CCCcceeeccccchhccccccccch--hccc Confidence 3456678999998875433 2321 12222 1 2358999999998877652211110 0001 Q ss_pred hhhhhhcCCCcccccccCCCCCCCCEEEEEecCCcCCCHHHHHHHHhhccc Q 005625 549 SIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQ 599 (687) Q Consensus 549 ~i~~ll~~~~~~~~~~g~l~~~~kPiIl~VGRLdp~Kni~~LVeAfa~l~~ 599 (687) ..+ ........+.+...+-|+.|.||++..++||..+.. T Consensus 262 ~~r------------~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~ 300 (495) T KOG0853|consen 262 PVR------------LYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHD 300 (495) T ss_pred ccc------------eeeeecccceEeeeeeecCCCCCceeehhhHHhhhc Confidence 000 011223336788999999999999999999876543 No 161 >PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Probab=25.71 E-value=2e+02 Score=31.87 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=28.7 Q ss_pred CCCceEEEeCCCChhHHHHHHHH-------cCCCcEEEEe--cCCcc Q 005625 405 QGFPDFIIGNYSDGNLVASLLAY-------KMGITQCTIA--HALEK 442 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr-------~lgVP~V~T~--HaL~~ 442 (687) .+++|.|.+-|-|-|+++..+-. .+|.|+|-|- |+..+ T Consensus 256 ~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf 302 (326) T PRK03371 256 EGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAF 302 (326) T ss_pred ccCCCEEEEccccccchhheecccccceEEecCCCeeEecCCCCchh Confidence 47899999999999998875432 3688888764 66543 No 162 >PRK13935 stationary phase survival protein SurE; Provisional Probab=25.21 E-value=8.5e+02 Score=25.96 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=21.4 Q ss_pred CCCceEEEeC------C----CChhHH-HHHHHHcCCCcEEEEec Q 005625 405 QGFPDFIIGN------Y----SDGNLV-ASLLAYKMGITQCTIAH 438 (687) Q Consensus 405 ~~~PDLIH~H------y----s~aglv-A~llAr~lgVP~V~T~H 438 (687) ..+||+|.+- . ..+|.| |+.-|...|||-+-.-. T Consensus 84 ~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253) T PRK13935 84 DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253) T ss_pred cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc Confidence 4689999853 1 123444 44557788999875533 No 163 >PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Probab=25.00 E-value=2.4e+02 Score=31.34 Aligned_cols=182 Identities=16% Similarity=0.239 Sum_probs=90.9 Q ss_pred HHHHHHHHHHhcCCCC----CCCchhHHHHhhhcCCccccCCcHHHHHHHHHHHHHhhcCCCcchHhHHhcCCCccceEE Q 005625 207 QSSLSKAEDHLSKLPP----DTPFSQFEYVLQGMGFEKGWGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVV 282 (687) Q Consensus 207 ~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~g~e~gwg~~~~r~~e~~~~l~~~l~~p~~~~le~f~~r~p~~~rIl 282 (687) -.+|++|.+...+=.- ..|-.+-.-......|. |.| +.|.+++...++.-+ |.. + -+||+ T Consensus 101 ~~~l~~A~~~~~~g~~~alvTaPI~K~al~~aG~~~~---GhT--------e~La~~~~~~~~~Mm---l~~-~-~LrV~ 164 (332) T PRK00232 101 LETLARALDGCLAGEFDAICTAPVNKGAINDAGIPFS---GHT--------EFFAELSGTTGVVMM---LAT-E-GLRVA 164 (332) T ss_pred HHHHHHHHHHHHcCCCCEEEECCcCHHHHHhCCCCCC---CHH--------HHHHHHhCCCCeEEE---Eec-C-CeEEE Confidence 3345555555443332 25666655444444442 333 677777776554211 111 2 26999 Q ss_pred EEccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCC-CCCccccccccc-c--- Q 005625 283 ILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDA-KGTTCNQRLERV-S--- 357 (687) Q Consensus 283 iiS~Hg~f~~~~vlG~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~-~g~~~~q~lE~i-~--- 357 (687) .+|.|==+. .|...-.. .-|.+.++. +.+.|++.|. ..|+|-|. .++|.+ ++..|+.+-+.+ . T Consensus 165 lvT~HipL~--~V~~~it~----e~i~~~i~~----~~~~l~~~gi-~~PrIaV~-gLNPHAGE~G~~G~EE~~iI~PAI 232 (332) T PRK00232 165 LVTTHLPLR--DVADAITP----ERLEEVIRI----LHADLRRKGI-AEPRIAVC-GLNPHAGEGGHFGREEIDIIIPAL 232 (332) T ss_pred EeccchhHH--HHHHHhCH----HHHHHHHHH----HHHHHHHhCC-CCCcEEEE-eeCCCCCCCCCCCHHHHHHHHHHH Confidence 999992110 11000000 112233332 2334553476 56888755 566766 555565532222 1 Q ss_pred ---CCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHH------- Q 005625 358 ---GTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAY------- 427 (687) Q Consensus 358 ---~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr------- 427 (687) ..+|+.+. =|+. ...+| .+...+++|.|.+-|-|-|+++..+-. T Consensus 233 ~~~~~~G~~v~-GP~p-----------aDt~F--------------~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNv 286 (332) T PRK00232 233 EELRAEGINLV-GPLP-----------ADTLF--------------QPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNI 286 (332) T ss_pred HHHHhCCCCcC-CCCC-----------chhhc--------------cccccCCCCEEEECcccccchhheecccCcceEE Confidence 11233331 1221 11111 122247899999999999998875432 Q ss_pred cCCCcEEEE--ecCCcc Q 005625 428 KMGITQCTI--AHALEK 442 (687) Q Consensus 428 ~lgVP~V~T--~HaL~~ 442 (687) .+|.|+|-| -|+..+ T Consensus 287 TlGLPiiRTS~DHGTAf 303 (332) T PRK00232 287 TLGLPFIRTSVDHGTAL 303 (332) T ss_pred ecCCCeeEeCCCCcchh Confidence 367888876 366543 No 164 >PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A. Probab=24.90 E-value=29 Score=28.82 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=26.0 Q ss_pred CCCCCcchHHHH---HHHHhHhHHHHHHHHHHHHhcCCc Q 005625 5 KLSRIPSIRERV---EDTLSVHRNELVSLLSRYVAQGKG 40 (687) Q Consensus 5 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 40 (687) .+.|+|+|...+ +....-...+|.+||.+.++.||= T Consensus 13 ~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L 51 (60) T PF08672_consen 13 PLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKL 51 (60) T ss_dssp EHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSE T ss_pred CHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcE Confidence 467888888887 333466778999999999998873 No 165 >cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame Probab=24.84 E-value=1.2e+02 Score=32.43 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=26.8 Q ss_pred eEEEEccCCCCCCC-CCCC------------CCCCCchhHHHHHHHHHHHHHHHHHHHhCCC Q 005625 280 NVVILSPHGYFGQA-NVLG------------LPDTGGQVVYILDQVRALENEMLLRIKRQGL 328 (687) Q Consensus 280 rIliiS~Hg~f~~~-~vlG------------~PdtGGqvvyVldlarAL~~~l~~~l~~~Gh 328 (687) -|+++|+|...... ...+ .|+.+....|=..-...|++++.+.+.+.|. T Consensus 46 ~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~y~~~g~~~LA~~i~~~l~~~Gi 107 (272) T cd07362 46 VILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPYDYPGDPELGRLLVEEGQEAGL 107 (272) T ss_pred EEEEECCCcccccceeeeccCccccccccCcCCchhhccccCCCCCHHHHHHHHHHHHHcCC Confidence 38999999655331 1111 1222222233333356666777777888998 No 166 >PRK09177 xanthine-guanine phosphoribosyltransferase; Validated Probab=24.70 E-value=1.4e+02 Score=29.16 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=35.0 Q ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEec Q 005625 386 WPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 386 wp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~H 438 (687) |..+.+-+..+...+.+ .++||+|.|--.-|-..|..+++.+++|.+-+.| T Consensus 12 ~~~i~~~i~~la~~I~~--~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~ 62 (156) T PRK09177 12 WDQLHRDARALAWRLLP--AGQWKGIIAVTRGGLVPAAILARELGIRLVDTVC 62 (156) T ss_pred HHHHHHHHHHHHHHHHh--hCCCCEEEEEecCCeehHHHHHHHcCCCceeEEE Confidence 44455555555555544 2479999998655556899999999999864544 No 167 >PLN02293 adenine phosphoribosyltransferase Probab=24.12 E-value=1.7e+02 Score=29.50 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=25.9 Q ss_pred CCceEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 406 GFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 406 ~~PDLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) .++|+|.+-...|=..|..+|..+|+|+++ T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~ 90 (187) T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVP 90 (187) T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEE Confidence 479999998777777899999999999874 No 168 >PLN02152 indole-3-acetate beta-glucosyltransferase Probab=23.65 E-value=7.9e+02 Score=28.31 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=56.1 Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccccccCCCCeEEEEecCCCCcccccccc Q 005625 301 TGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWI 380 (687) Q Consensus 301 tGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~i 380 (687) ..|...-.+++++.|+.. .|+ .|+++|....... .-+......++++++.+|-+-..+.- - T Consensus 13 ~qGHi~P~l~La~~La~~-------~G~----~vT~v~t~~~~~~-----~~~~~~~~~~~i~~~~i~dglp~g~~---~ 73 (455) T PLN02152 13 AQGHVNPSLRFARRLIKT-------TGT----RVTFATCLSVIHR-----SMIPNHNNVENLSFLTFSDGFDDGVI---S 73 (455) T ss_pred ccccHHHHHHHHHHHhhC-------CCc----EEEEEeccchhhh-----hhhccCCCCCCEEEEEcCCCCCCccc---c Confidence 367888899999988741 588 9999876421110 00111111125777777632221110 0 Q ss_pred ccccchhhHHHHH----HHHHHHHHHhc-CCCc-eEEEeCCCChhHHHHHHHHcCCCcEEE Q 005625 381 SRFDVWPYLETFT----EDVGSEITAEL-QGFP-DFIIGNYSDGNLVASLLAYKMGITQCT 435 (687) Q Consensus 381 sr~~iwp~Le~f~----~~~~~~L~~~~-~~~P-DLIH~Hys~aglvA~llAr~lgVP~V~ 435 (687) ...++..++.... ..+...+.+.. .++| +.|.+..... .+.-+|+++|||.+. T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~--wa~dvA~~lgIP~~~ 132 (455) T PLN02152 74 NTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPN--WAPKVARRFHLPSVL 132 (455) T ss_pred ccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccH--hHHHHHHHhCCCEEE Confidence 0112222322221 12222222211 2244 7788765442 356678899999643 No 169 >cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do Probab=23.48 E-value=5e+02 Score=27.35 Aligned_cols=93 Identities=18% Similarity=0.354 Sum_probs=53.1 Q ss_pred EEEccCCCCCCCCCCCCC---------CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccc Q 005625 282 VILSPHGYFGQANVLGLP---------DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQR 352 (687) Q Consensus 282 liiS~Hg~f~~~~vlG~P---------dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~ 352 (687) .-|-.|.|.+-.+.+..| +-|-.-.-|.+.| ..+++.|.+.|+ .-.+-|. T Consensus 81 ~~lE~H~w~sr~~~~e~PD~lvfDLDP~~~~~f~~v~~~A----~~vr~~L~~lgL----~~f~KTS------------- 139 (227) T cd04861 81 GAIELHPWLSRADDLERPDRLVFDLDPGPGVPFEDVVEAA----LLLRELLDELGL----ESFPKTS------------- 139 (227) T ss_pred CcEEeeCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH----HHHHHHHHHcCC----ccceEcc------------- Confidence 446677777544334433 3332323344444 456678888999 4344442 Q ss_pred cccccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCC Q 005625 353 LERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNY 415 (687) Q Consensus 353 lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hy 415 (687) |..|.+|+ +|..+. .-|.-...|+..+.+.+.+ ..||.+-+.. T Consensus 140 -----G~kGlHV~-vPl~~~-----------~~~~~~r~fa~~iA~~l~~---~~P~~~t~~~ 182 (227) T cd04861 140 -----GGKGLHVY-VPLAPR-----------YTWDEVRAFAKALARELAR---RLPDLFTAEM 182 (227) T ss_pred -----CCCeEEEE-EEcCCC-----------CCHHHHHHHHHHHHHHHHH---HCchhhhhHh Confidence 33477765 677653 1266667788887777755 4677765543 No 170 >PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Probab=23.13 E-value=2.5e+02 Score=31.08 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=28.1 Q ss_pred CCCceEEEeCCCChhHHHHHHHH-------cCCCcEEEEe--cCCc Q 005625 405 QGFPDFIIGNYSDGNLVASLLAY-------KMGITQCTIA--HALE 441 (687) Q Consensus 405 ~~~PDLIH~Hys~aglvA~llAr-------~lgVP~V~T~--HaL~ 441 (687) .+++|.|.+-|-|-|+++..+-. .+|.|+|-|- |+.. T Consensus 257 ~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTA 302 (332) T PRK03743 257 QGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTA 302 (332) T ss_pred ccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcch Confidence 46899999999999988875432 3688888774 6654 No 171 >COG5452 Uncharacterized conserved protein [Function unknown] Probab=21.96 E-value=1.5e+02 Score=29.48 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=56.9 Q ss_pred chhHHHHhhhcCCccccCCcH--HHHHHH-------HHHHHHhhcCCCcchHhHHhcCCCccceEEEEccCCCCCCCCCC Q 005625 226 FSQFEYVLQGMGFEKGWGDTA--EHVLEM-------MHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVL 296 (687) Q Consensus 226 ~~~~~~~~~~~g~e~gwg~~~--~r~~e~-------~~~l~~~l~~p~~~~le~f~~r~p~~~rIliiS~Hg~f~~~~vl 296 (687) +.++.|.|+|+|- ||++ .|++.- ++.-.+-|+.-|...|.++|.| +| | +.. T Consensus 80 f~dvDhs~RElGi----gD~gVpKrMKKlAgmFYGRl~aY~aAld~~d~~alaaal~R-----n~-----~------pd~ 139 (180) T COG5452 80 FKDVDHSLRELGI----GDQGVPKRMKKLAGMFYGRLEAYDAALDGNDATALAAALAR-----NI-----R------PDV 139 (180) T ss_pred HhhhhHHHHHhCC----CcccchHHHHHHHHHHHhHHHHHHHHhcccchHHHHHHHHH-----hc-----c------ccc Confidence 5678899999987 6654 344332 2445788999999999999999 42 1 112 Q ss_pred C-CCCCCchhHHHHHHHHHHHHHHHHHH Q 005625 297 G-LPDTGGQVVYILDQVRALENEMLLRI 323 (687) Q Consensus 297 G-~PdtGGqvvyVldlarAL~~~l~~~l 323 (687) + -|+.-|...||++..++|+.+-.+.| T Consensus 140 ~~~p~a~~La~yv~~~~~~Laaq~~eal 167 (180) T COG5452 140 EDWPEAAGLATYVLKVRDALAAQPEEAL 167 (180) T ss_pred cccchhHHHHHHHHHHHHHHHcCcHHHH Confidence 2 38889999999999999988644444 No 172 >cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization. Probab=21.95 E-value=5.6e+02 Score=27.02 Aligned_cols=93 Identities=19% Similarity=0.402 Sum_probs=51.5 Q ss_pred EEEccCCCCCCCCCCCCC-------CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccccc Q 005625 282 VILSPHGYFGQANVLGLP-------DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLE 354 (687) Q Consensus 282 liiS~Hg~f~~~~vlG~P-------dtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~lE 354 (687) .-|-.|.|.+-.+.+..| |-||.. .+.+...+..+++.|.+.|+ .-.+-| T Consensus 83 g~iE~H~w~s~~~~~e~PD~~vfDLDP~~~~---f~~v~~~A~~~r~~L~~~gL----~~f~KT---------------- 139 (228) T cd04864 83 ASITPHVWLSRADDLEHPDLMVFDLDPSADD---IEAVRTAALAVRELLDELGL----PSFVKT---------------- 139 (228) T ss_pred CcEEeeCCCCCCCCCCCCCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHcCC----ccceEc---------------- Confidence 446667776443333333 223331 23333344456678888999 333333 Q ss_pred cccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeC Q 005625 355 RVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGN 414 (687) Q Consensus 355 ~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~H 414 (687) .|.+|.+|+ +|..+. .-|....+|+..+++.+.+ ..||++-+. T Consensus 140 --SG~kGlHv~-vPl~~~-----------~~~~~~r~fa~~lA~~l~~---~~P~~~t~~ 182 (228) T cd04864 140 --TGSRGFHVV-VPLDGR-----------GDFDDVRAFAAEAADALAK---RDPDLLTTE 182 (228) T ss_pred --cCCCeEEEE-EEcCCC-----------CCHHHHHHHHHHHHHHHHH---HCchhhhHH Confidence 233477765 677653 1255667788777777655 567765443 No 173 >PRK13933 stationary phase survival protein SurE; Provisional Probab=21.40 E-value=1e+03 Score=25.40 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=21.2 Q ss_pred cCCCceEEEeC------C----CChhHH-HHHHHHcCCCcEEEE Q 005625 404 LQGFPDFIIGN------Y----SDGNLV-ASLLAYKMGITQCTI 436 (687) Q Consensus 404 ~~~~PDLIH~H------y----s~aglv-A~llAr~lgVP~V~T 436 (687) +..+||+|.+- . ..+|.| |++-|...|||-+-. T Consensus 84 ~~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~ 127 (253) T PRK13933 84 VPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAV 127 (253) T ss_pred cCCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEE Confidence 35689999853 1 124444 445577899998754 No 174 >COG0496 SurE Predicted acid phosphatase [General function prediction only] Probab=20.98 E-value=8.3e+02 Score=26.12 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=22.8 Q ss_pred CCceEEEeC----------CCChhHHHH-HHHHcCCCcEEEEecCC Q 005625 406 GFPDFIIGN----------YSDGNLVAS-LLAYKMGITQCTIAHAL 440 (687) Q Consensus 406 ~~PDLIH~H----------ys~aglvA~-llAr~lgVP~V~T~HaL 440 (687) .+||+|.+- ...+|.||. +=+..+|+|-|-.-+.. T Consensus 82 ~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252) T COG0496 82 PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252) T ss_pred CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh Confidence 459999864 112344444 44888999988765543 No 175 >COG2236 Predicted phosphoribosyltransferases [General function prediction only] Probab=20.89 E-value=2e+02 Score=29.40 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=34.7 Q ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCc Q 005625 386 WPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT 432 (687) Q Consensus 386 wp~Le~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP 432 (687) |.........+++.+.+ -+.+||+|.|-.--|-..|.+++..+|+. T Consensus 9 w~~I~~~~~~lA~kI~~-s~~~PDvIiaiaRGG~~pariLsd~L~~~ 54 (192) T COG2236 9 WEEIHRLCRALAEKIRA-SGFKPDVIVAIARGGLIPARILSDFLGVK 54 (192) T ss_pred HHHHHHHHHHHHHHHHH-cCCCCCEEEEEcCCceehHHHHHHHhCCC Confidence 66666666677777754 36899999998555556788999999984 No 176 >PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known. Probab=20.87 E-value=1.3e+02 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=33.9 Q ss_pred cchHHHHHHHHhHhHHHHHHHHHHHHhcCCcccchhhHHHHHHhhh Q 005625 10 PSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIF 55 (687) Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (687) .||.|.+.+---...++|..+|..|.+...+- .+.-|+.+|.+++ T Consensus 10 ~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~-~H~~Iv~aF~dv~ 54 (59) T PF04844_consen 10 ESMVEMIEENGIRDWDDLEELLACYLSLNSPE-HHKFIVEAFVDVW 54 (59) T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCChh-hhhHHHHHHHHHH Confidence 47888887776668899999999998876651 2334778888876 No 177 >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C .... Probab=20.68 E-value=3.1e+02 Score=25.42 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=39.0 Q ss_pred CCCceEEEeCCC---ChhHHHHHHHHcCCCcEEEEecCCccccCCCC-chhhhhhcccccccchhHHHHHHHhcCCEEEe Q 005625 405 QGFPDFIIGNYS---DGNLVASLLAYKMGITQCTIAHALEKTKYPDS-DIYWKKFDEKYHFSCQFTADLIAMNNADFIIT 480 (687) Q Consensus 405 ~~~PDLIH~Hys---~aglvA~llAr~lgVP~V~T~HaL~~~ky~~s-~l~w~~~~~~y~~s~rf~aE~iam~~AD~IIt 480 (687) ..+|=++-++.. .+.-...-++.++|+|+++|..+-.. .+.+ ..+...+ -.++.. .-..+++.||.||+ T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~--i~~~hp~~~G~~---g~~~~~--~~~~~l~~aDlvl~ 83 (137) T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGV--IPEDHPLFLGYL---GLFGSP--AANEALEQADLVLA 83 (137) T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTS--STTTSTTEEEES---CGGSCH--HHHHHHHHSSEEEE T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccc--cCCCCchhcccC---CccCCH--HHHHHhcCCCEEEE Confidence 578988888842 34444556688899999999987432 2211 1111000 001111 12356799999998 Q ss_pred c Q 005625 481 S 481 (687) Q Consensus 481 s 481 (687) . T Consensus 84 i 84 (137) T PF00205_consen 84 I 84 (137) T ss_dssp E T ss_pred E Confidence 5 No 178 >KOG3349 consensus Predicted glycosyltransferase [General function prediction only] Probab=20.55 E-value=4.7e+02 Score=26.17 Aligned_cols=88 Identities=17% Similarity=0.336 Sum_probs=47.6 Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCC-CccccccccccCCCCeEEEEecCCCCccccccccccccchhhHH Q 005625 312 VRALENEMLLRIKRQGLDISPKILIVTRLIPDAKG-TTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLE 390 (687) Q Consensus 312 arAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g-~~~~q~lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le 390 (687) ...|..+.++.|++.|. .=+|+-- . +| +.|..+...+....+..|....+.+. T Consensus 20 ~~Vl~~~~~~~L~k~G~----~kLiiQ~--G--rg~~~~~d~~~~~~k~~gl~id~y~f~ps------------------ 73 (170) T KOG3349|consen 20 SCVLSEEFLQELQKRGF----TKLIIQI--G--RGQPFFGDPIDLIRKNGGLTIDGYDFSPS------------------ 73 (170) T ss_pred HHHcCHHHHHHHHHcCc----cEEEEEe--c--CCccCCCCHHHhhcccCCeEEEEEecCcc------------------ Confidence 34567778899999998 2233321 1 11 22222322222234566665555442 Q ss_pred HHHHHHHHHHHHhcCCCceEEEeCCCChhHHHHHHHHcCCCcEEEEec Q 005625 391 TFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (687) Q Consensus 391 ~f~~~~~~~L~~~~~~~PDLIH~Hys~aglvA~llAr~lgVP~V~T~H 438 (687) +...| + ..|+|++|-..|...-.+ ++|-|.++.+- T Consensus 74 -----l~e~I-~----~AdlVIsHAGaGS~letL---~l~KPlivVvN 108 (170) T KOG3349|consen 74 -----LTEDI-R----SADLVISHAGAGSCLETL---RLGKPLIVVVN 108 (170) T ss_pred -----HHHHH-h----hccEEEecCCcchHHHHH---HcCCCEEEEeC Confidence 11122 3 369999997665544444 78889876543 No 179 >cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization. Probab=20.43 E-value=6.2e+02 Score=26.67 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=53.1 Q ss_pred EEEccCCCCCCCCCCCC---------CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEeccCCCCCCCccccc Q 005625 282 VILSPHGYFGQANVLGL---------PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQR 352 (687) Q Consensus 282 liiS~Hg~f~~~~vlG~---------PdtGGqvvyVldlarAL~~~l~~~l~~~Gh~~~~~V~VlTr~ip~~~g~~~~q~ 352 (687) .-|-.|.|.+-.+.+.. |+-|---.-|.+.| ..+++.|.+.|+ .-.+-| T Consensus 82 g~lE~H~w~sr~~~~e~PD~lvfDLDP~~~~~f~~v~~~A----~~vr~~L~~lgL----~sf~KT-------------- 139 (228) T cd04865 82 GCIELHPWPSRAGDLDHPDELVIDLDPQPGTSFEDVVEVA----LLVREVLDELGL----RGYPKT-------------- 139 (228) T ss_pred CcEEeeCCccCcCCCCCCCEEEEECCCCCCCCHHHHHHHH----HHHHHHHHHcCC----ccceEc-------------- Confidence 44667777654433333 33343333444444 445667888999 433334 Q ss_pred cccccCCCCeEEEEecCCCCccccccccccccchhhHHHHHHHHHHHHHHhcCCCceEEEeCC Q 005625 353 LERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNY 415 (687) Q Consensus 353 lE~i~~~~~v~IlRvP~~~~~~~~~~~isr~~iwp~Le~f~~~~~~~L~~~~~~~PDLIH~Hy 415 (687) .|..|.+|+ +|..+. .-|.....|+..+.+.+.+ ..||++-+.. T Consensus 140 ----SG~kGlHv~-vPl~~~-----------~~~~~~r~fa~~iA~~l~~---~~P~~~t~~~ 183 (228) T cd04865 140 ----SGARGLHIY-VPIAPR-----------YTFEEVRRFAELLAREVER---RLPDLATTER 183 (228) T ss_pred ----cCCCeEEEE-EEcCCC-----------CCHHHHHHHHHHHHHHHHH---HCchhhhhHh Confidence 233477765 677653 1255667788777777755 5688765554 No 180 >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. Probab=20.37 E-value=1e+02 Score=32.16 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=33.9 Q ss_pred CceEEEEEccCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcCcccCcccHHHHHHHhhcCCcEEEEcCCC Q 005625 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQVYVH 675 (687) Q Consensus 603 ~~nLVLVGG~~d~~~s~d~ee~~el~~L~~li~elgL~~~V~flG~~l~~~dl~elYr~aad~~dVFVlPSl~ 675 (687) ....++|||..+ -..+...++.+.++++.+ .-|.|+|- .+ .+-. .+|.+.+||+- T Consensus 27 gtdai~vGGS~~-------vt~~~~~~~v~~ik~~~l-Pvilfp~~-~~-----~i~~----~aDa~l~~svl 81 (223) T TIGR01768 27 GTDAILIGGSQG-------VTYEKTDTLIEALRRYGL-PIILFPSN-PT-----NVSR----DADALFFPSVL 81 (223) T ss_pred CCCEEEEcCCCc-------ccHHHHHHHHHHHhccCC-CEEEeCCC-cc-----ccCc----CCCEEEEEEee Confidence 456788887632 122245566677888885 46778883 22 1222 24999999964 No 181 >PRK12435 ferrochelatase; Provisional Probab=20.14 E-value=8e+02 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=21.0 Q ss_pred ceEEEeCCCChhHHHHHHHHc------C------CCcEEEEecCCcc Q 005625 408 PDFIIGNYSDGNLVASLLAYK------M------GITQCTIAHALEK 442 (687) Q Consensus 408 PDLIH~Hys~aglvA~llAr~------l------gVP~V~T~HaL~~ 442 (687) ..+|...+-+.+++.+++.+. . ++.+++++||+.. T Consensus 140 ~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~ 186 (311) T PRK12435 140 ITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPE 186 (311) T ss_pred EEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCch Confidence 344444344677776665431 1 2468999999854 No 182 >PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process Probab=20.03 E-value=2.6e+02 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=19.9 Q ss_pred CCCceEEEeCCCC-hhH-HHHHHHHc-C-CCcEEE Q 005625 405 QGFPDFIIGNYSD-GNL-VASLLAYK-M-GITQCT 435 (687) Q Consensus 405 ~~~PDLIH~Hys~-agl-vA~llAr~-l-gVP~V~ 435 (687) ..+||+|.|.+.. +++ ++.+-++. + ++|+++ T Consensus 87 ~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~t 121 (169) T PF06925_consen 87 EFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVT 121 (169) T ss_pred hcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEE Confidence 4799999998875 445 44444433 4 577654 Done!