Query 005626
Match_columns 687
No_of_seqs 1700 out of 3611
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 11:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2E-122 5E-127 896.6 50.5 657 10-685 80-785 (966)
2 COG3914 Spy Predicted O-linked 100.0 6E-70 1.3E-74 532.5 35.7 388 280-685 45-456 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 3.2E-60 7E-65 472.4 11.9 151 488-642 1-153 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 3.9E-47 8.5E-52 371.3 37.7 418 28-461 28-479 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 1E-35 2.2E-40 326.0 54.2 382 48-437 127-577 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 6.8E-34 1.5E-38 331.2 56.0 405 47-462 464-895 (899)
7 PRK11447 cellulose synthase su 100.0 6.2E-33 1.3E-37 323.2 55.4 412 45-463 178-736 (1157)
8 PRK11447 cellulose synthase su 100.0 2.7E-33 5.7E-38 326.3 51.2 367 53-430 274-739 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-32 7.2E-37 317.0 55.8 387 50-453 433-819 (899)
10 PRK15174 Vi polysaccharide exp 100.0 2.2E-32 4.7E-37 298.1 50.0 362 47-435 41-407 (656)
11 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-31 2.9E-36 293.5 49.5 364 82-462 127-566 (615)
12 PRK15174 Vi polysaccharide exp 100.0 1.5E-31 3.3E-36 291.4 46.6 366 59-438 16-388 (656)
13 KOG0547 Translocase of outer m 100.0 1.2E-30 2.6E-35 250.0 39.5 380 48-434 115-569 (606)
14 PRK10049 pgaA outer membrane p 100.0 1.4E-29 3.1E-34 282.1 47.8 409 46-466 13-455 (765)
15 PRK10049 pgaA outer membrane p 100.0 1.2E-29 2.6E-34 282.7 44.6 379 44-439 45-464 (765)
16 PRK09782 bacteriophage N4 rece 100.0 6.1E-28 1.3E-32 268.2 52.3 159 41-203 37-228 (987)
17 KOG2002 TPR-containing nuclear 100.0 1E-28 2.2E-33 255.6 39.3 395 46-447 305-761 (1018)
18 KOG2002 TPR-containing nuclear 100.0 5.5E-28 1.2E-32 250.3 42.6 388 44-442 160-570 (1018)
19 KOG0548 Molecular co-chaperone 100.0 2E-27 4.3E-32 231.9 37.9 390 49-447 3-471 (539)
20 PRK09782 bacteriophage N4 rece 100.0 4E-26 8.6E-31 253.9 45.8 359 60-436 354-745 (987)
21 KOG1126 DNA-binding cell divis 100.0 5.6E-27 1.2E-31 234.6 27.9 307 117-437 318-626 (638)
22 KOG0547 Translocase of outer m 100.0 8.9E-26 1.9E-30 216.7 34.5 359 84-458 117-557 (606)
23 KOG1173 Anaphase-promoting com 100.0 2.9E-25 6.3E-30 217.5 37.1 389 46-442 47-529 (611)
24 PRK14574 hmsH outer membrane p 100.0 4.1E-24 8.9E-29 233.1 49.9 390 46-443 32-491 (822)
25 KOG1155 Anaphase-promoting com 100.0 1E-24 2.2E-29 208.3 39.0 364 50-434 166-539 (559)
26 KOG0624 dsRNA-activated protei 100.0 1.2E-24 2.5E-29 199.9 35.1 327 44-370 34-377 (504)
27 KOG1126 DNA-binding cell divis 100.0 4.2E-26 9.1E-31 228.3 27.1 306 84-403 319-626 (638)
28 KOG2076 RNA polymerase III tra 100.0 3.1E-24 6.8E-29 221.3 40.7 377 46-429 137-553 (895)
29 KOG1155 Anaphase-promoting com 100.0 1.4E-23 3E-28 200.6 42.0 373 47-431 77-495 (559)
30 PRK11788 tetratricopeptide rep 99.9 2.2E-24 4.8E-29 225.0 39.4 308 83-430 36-346 (389)
31 PRK11788 tetratricopeptide rep 99.9 6.7E-24 1.5E-28 221.3 39.5 303 46-396 33-346 (389)
32 KOG2003 TPR repeat-containing 99.9 1.4E-24 3E-29 206.3 29.5 404 48-468 201-690 (840)
33 KOG0624 dsRNA-activated protei 99.9 2.2E-23 4.7E-28 191.6 32.6 315 78-406 34-379 (504)
34 PRK14574 hmsH outer membrane p 99.9 2.8E-22 6.1E-27 218.8 46.7 374 52-439 72-521 (822)
35 KOG2003 TPR repeat-containing 99.9 2.6E-23 5.7E-28 197.6 31.9 383 51-442 240-700 (840)
36 KOG4162 Predicted calmodulin-b 99.9 3.4E-22 7.3E-27 203.0 39.2 389 47-437 322-789 (799)
37 KOG1173 Anaphase-promoting com 99.9 3.8E-22 8.2E-27 195.8 36.3 403 46-459 14-510 (611)
38 KOG0495 HAT repeat protein [RN 99.9 2.5E-21 5.5E-26 192.2 41.4 372 49-439 517-888 (913)
39 KOG0495 HAT repeat protein [RN 99.9 1E-20 2.2E-25 188.0 44.4 381 60-457 418-870 (913)
40 KOG2076 RNA polymerase III tra 99.9 2.9E-21 6.3E-26 199.7 41.8 337 82-432 139-513 (895)
41 KOG1174 Anaphase-promoting com 99.9 2.2E-21 4.8E-26 182.8 36.4 388 39-442 88-511 (564)
42 KOG0548 Molecular co-chaperone 99.9 9.7E-22 2.1E-26 192.4 32.4 361 51-427 39-485 (539)
43 TIGR00540 hemY_coli hemY prote 99.9 6.3E-20 1.4E-24 190.3 38.4 301 120-431 88-399 (409)
44 TIGR00540 hemY_coli hemY prote 99.9 1.4E-19 3E-24 187.7 38.6 302 48-396 84-398 (409)
45 KOG1127 TPR repeat-containing 99.9 1.8E-20 3.9E-25 194.5 30.3 373 61-440 471-888 (1238)
46 PF13429 TPR_15: Tetratricopep 99.9 1.3E-22 2.8E-27 200.2 13.9 262 161-431 12-277 (280)
47 KOG1129 TPR repeat-containing 99.9 6.8E-20 1.5E-24 167.7 29.7 382 51-442 7-469 (478)
48 PLN03218 maturation of RBCL 1; 99.9 1.3E-17 2.8E-22 187.7 54.6 367 47-431 369-748 (1060)
49 PRK10747 putative protoheme IX 99.9 3.8E-19 8.1E-24 183.4 39.2 303 119-432 87-391 (398)
50 KOG4162 Predicted calmodulin-b 99.9 5.1E-19 1.1E-23 180.1 36.5 349 47-402 356-788 (799)
51 KOG1174 Anaphase-promoting com 99.9 2.5E-19 5.4E-24 169.1 30.8 304 64-416 214-519 (564)
52 KOG1156 N-terminal acetyltrans 99.9 6.1E-18 1.3E-22 169.0 41.8 372 47-436 6-439 (700)
53 PF13429 TPR_15: Tetratricopep 99.9 9.2E-22 2E-26 194.1 14.5 261 51-361 11-275 (280)
54 PRK12370 invasion protein regu 99.9 2.8E-19 6E-24 192.5 32.9 250 171-430 275-534 (553)
55 PLN03081 pentatricopeptide (PP 99.9 7.4E-19 1.6E-23 196.0 37.3 400 46-466 121-556 (697)
56 PLN03218 maturation of RBCL 1; 99.9 6.5E-17 1.4E-21 182.0 52.7 359 56-433 414-785 (1060)
57 KOG1125 TPR repeat-containing 99.9 2.6E-20 5.7E-25 184.0 21.7 260 161-420 289-560 (579)
58 PRK12370 invasion protein regu 99.9 4.1E-19 8.9E-24 191.2 32.9 250 97-363 276-535 (553)
59 PRK10747 putative protoheme IX 99.9 3.9E-18 8.4E-23 175.9 38.4 295 49-396 85-389 (398)
60 COG3063 PilF Tfp pilus assembl 99.9 3.1E-19 6.7E-24 156.5 24.8 215 42-261 29-243 (250)
61 PLN03081 pentatricopeptide (PP 99.9 8.1E-18 1.8E-22 187.7 43.1 369 47-434 86-493 (697)
62 KOG1129 TPR repeat-containing 99.9 4.7E-20 1E-24 168.8 20.3 245 160-412 226-473 (478)
63 PLN03077 Protein ECB2; Provisi 99.9 1.1E-17 2.5E-22 191.2 44.9 355 85-462 326-715 (857)
64 KOG0550 Molecular chaperone (D 99.9 3.9E-20 8.5E-25 174.8 19.4 301 45-400 46-353 (486)
65 KOG1125 TPR repeat-containing 99.9 3.9E-20 8.5E-25 182.8 20.2 266 47-319 284-561 (579)
66 COG2956 Predicted N-acetylgluc 99.8 1.4E-17 3.1E-22 152.7 33.3 320 163-501 41-371 (389)
67 PRK11189 lipoprotein NlpI; Pro 99.8 3.7E-18 8.1E-23 168.4 29.2 222 129-365 39-267 (296)
68 PRK11189 lipoprotein NlpI; Pro 99.8 3E-18 6.5E-23 169.1 26.7 239 62-346 40-283 (296)
69 KOG1156 N-terminal acetyltrans 99.8 6.4E-17 1.4E-21 161.8 34.7 348 82-439 7-408 (700)
70 KOG2376 Signal recognition par 99.8 5.4E-16 1.2E-20 153.7 40.6 391 48-449 12-505 (652)
71 KOG1127 TPR repeat-containing 99.8 5.5E-18 1.2E-22 176.3 27.8 376 51-442 402-856 (1238)
72 TIGR02521 type_IV_pilW type IV 99.8 1.5E-17 3.2E-22 160.3 28.6 205 46-255 29-233 (234)
73 KOG0550 Molecular chaperone (D 99.8 1.4E-18 3.1E-23 164.4 20.2 277 157-434 49-353 (486)
74 COG3063 PilF Tfp pilus assembl 99.8 1.3E-17 2.8E-22 146.5 24.7 206 191-437 35-242 (250)
75 KOG1840 Kinesin light chain [C 99.8 1.5E-17 3.2E-22 169.8 29.1 245 187-431 195-479 (508)
76 PLN03077 Protein ECB2; Provisi 99.8 2.2E-16 4.9E-21 180.5 41.6 360 46-431 321-720 (857)
77 KOG1915 Cell cycle control pro 99.8 6.4E-15 1.4E-19 142.0 43.9 370 47-433 72-502 (677)
78 COG2956 Predicted N-acetylgluc 99.8 1.6E-16 3.5E-21 145.9 31.2 299 120-429 39-345 (389)
79 TIGR02521 type_IV_pilW type IV 99.8 3.8E-17 8.3E-22 157.4 28.4 202 191-433 31-234 (234)
80 KOG1840 Kinesin light chain [C 99.8 9.8E-17 2.1E-21 163.8 30.7 241 157-397 199-479 (508)
81 PLN02789 farnesyltranstransfer 99.8 5.3E-17 1.2E-21 159.2 26.5 210 201-415 47-268 (320)
82 PLN02789 farnesyltranstransfer 99.8 3.2E-16 6.9E-21 153.7 28.0 212 128-346 49-267 (320)
83 KOG3785 Uncharacterized conser 99.8 8.3E-15 1.8E-19 136.1 33.1 364 56-426 30-452 (557)
84 cd05804 StaR_like StaR_like; a 99.8 6.9E-15 1.5E-19 151.3 35.6 211 78-295 2-215 (355)
85 KOG1915 Cell cycle control pro 99.7 4.5E-13 9.8E-18 129.4 44.5 384 47-441 106-545 (677)
86 cd05804 StaR_like StaR_like; a 99.7 8.4E-15 1.8E-19 150.7 34.7 309 112-432 2-337 (355)
87 KOG3785 Uncharacterized conser 99.7 4E-14 8.6E-19 131.6 30.4 375 49-435 58-494 (557)
88 PRK15179 Vi polysaccharide bio 99.7 7.4E-14 1.6E-18 150.4 36.0 162 282-443 68-229 (694)
89 TIGR03302 OM_YfiO outer membra 99.7 6.8E-15 1.5E-19 141.4 23.7 191 42-256 27-234 (235)
90 KOG2376 Signal recognition par 99.7 1.5E-12 3.3E-17 129.5 38.6 370 45-426 43-515 (652)
91 COG3071 HemY Uncharacterized e 99.7 1.6E-12 3.5E-17 123.9 36.7 298 123-431 91-390 (400)
92 PF12569 NARP1: NMDA receptor- 99.7 1.6E-12 3.5E-17 135.0 39.8 275 48-329 4-334 (517)
93 KOG1130 Predicted G-alpha GTPa 99.7 9.6E-15 2.1E-19 138.3 19.0 294 122-419 23-372 (639)
94 PRK04841 transcriptional regul 99.6 2.5E-12 5.5E-17 149.3 41.0 385 51-436 344-765 (903)
95 PRK14720 transcript cleavage f 99.6 1.6E-13 3.5E-18 148.3 28.3 290 76-439 25-314 (906)
96 COG3071 HemY Uncharacterized e 99.6 8.4E-12 1.8E-16 119.1 36.3 297 47-361 83-388 (400)
97 PRK15359 type III secretion sy 99.6 8.7E-15 1.9E-19 127.2 15.1 120 321-443 14-133 (144)
98 TIGR03302 OM_YfiO outer membra 99.6 6.9E-14 1.5E-18 134.4 22.3 182 77-279 28-223 (235)
99 PRK15359 type III secretion sy 99.6 1.4E-14 2.9E-19 125.9 15.4 127 286-415 13-139 (144)
100 PF12569 NARP1: NMDA receptor- 99.6 2.4E-12 5.1E-17 133.8 33.0 312 81-397 3-334 (517)
101 KOG1130 Predicted G-alpha GTPa 99.6 2.1E-14 4.6E-19 136.0 15.5 269 162-431 22-344 (639)
102 KOG4340 Uncharacterized conser 99.6 3.2E-12 7E-17 116.4 27.9 363 56-436 18-448 (459)
103 PRK10370 formate-dependent nit 99.6 1.3E-13 2.7E-18 126.6 18.5 153 274-437 24-179 (198)
104 PRK04841 transcriptional regul 99.6 1.9E-11 4.1E-16 142.1 39.4 349 49-401 375-764 (903)
105 KOG3060 Uncharacterized conser 99.5 1.9E-12 4.1E-17 115.6 22.1 174 277-450 63-239 (289)
106 PRK10370 formate-dependent nit 99.5 8.1E-13 1.8E-17 121.2 20.4 125 279-403 52-179 (198)
107 KOG2047 mRNA splicing factor [ 99.5 4.3E-10 9.4E-15 113.2 40.7 137 47-186 101-277 (835)
108 KOG3060 Uncharacterized conser 99.5 2.3E-11 5E-16 108.8 28.1 186 187-379 48-236 (289)
109 COG5010 TadD Flp pilus assembl 99.5 1.8E-12 3.9E-17 117.2 20.8 177 244-428 52-228 (257)
110 PRK14720 transcript cleavage f 99.5 1.7E-12 3.7E-17 140.6 24.3 219 186-443 26-264 (906)
111 KOG2047 mRNA splicing factor [ 99.5 2.3E-10 4.9E-15 115.2 36.3 356 64-433 84-581 (835)
112 COG5010 TadD Flp pilus assembl 99.5 4.5E-12 9.8E-17 114.7 20.8 180 64-251 49-228 (257)
113 KOG1128 Uncharacterized conser 99.5 2.6E-12 5.5E-17 131.2 20.4 225 188-434 395-619 (777)
114 TIGR02552 LcrH_SycD type III s 99.5 1.1E-12 2.4E-17 113.9 15.4 118 321-438 4-121 (135)
115 KOG0553 TPR repeat-containing 99.5 1.2E-12 2.6E-17 120.6 13.7 113 334-446 81-193 (304)
116 PRK15179 Vi polysaccharide bio 99.5 1.5E-11 3.2E-16 132.9 24.2 153 100-259 70-222 (694)
117 KOG1128 Uncharacterized conser 99.4 7E-12 1.5E-16 128.1 19.6 217 160-398 401-617 (777)
118 TIGR02552 LcrH_SycD type III s 99.4 5.2E-12 1.1E-16 109.7 15.7 119 287-405 4-122 (135)
119 PRK15363 pathogenicity island 99.4 5.1E-12 1.1E-16 106.8 14.5 102 331-432 32-133 (157)
120 KOG0553 TPR repeat-containing 99.4 5.1E-12 1.1E-16 116.5 13.6 108 46-153 79-186 (304)
121 PF04733 Coatomer_E: Coatomer 99.4 9.7E-12 2.1E-16 120.7 15.6 168 191-368 102-270 (290)
122 PF04733 Coatomer_E: Coatomer 99.4 8.4E-12 1.8E-16 121.2 14.7 259 166-438 10-272 (290)
123 PRK15363 pathogenicity island 99.4 2.8E-11 6.1E-16 102.4 15.3 106 294-399 28-134 (157)
124 PRK10866 outer membrane biogen 99.3 1.1E-09 2.5E-14 103.7 24.3 183 45-251 29-238 (243)
125 KOG4340 Uncharacterized conser 99.3 1.1E-09 2.4E-14 100.1 22.5 279 127-425 21-333 (459)
126 KOG3617 WD40 and TPR repeat-co 99.3 1.3E-08 2.8E-13 105.3 30.7 325 60-428 740-1171(1416)
127 COG4783 Putative Zn-dependent 99.3 2.5E-09 5.3E-14 105.4 24.3 156 78-257 302-457 (484)
128 COG4783 Putative Zn-dependent 99.3 9.4E-10 2E-14 108.2 21.4 158 297-454 303-460 (484)
129 PLN03088 SGT1, suppressor of 99.2 2.3E-10 5.1E-15 115.6 16.5 111 49-159 3-113 (356)
130 PLN03088 SGT1, suppressor of 99.2 3E-10 6.4E-15 114.8 16.4 111 305-415 7-117 (356)
131 PF13525 YfiO: Outer membrane 99.2 2.1E-09 4.6E-14 99.7 20.7 176 46-245 3-198 (203)
132 PRK10866 outer membrane biogen 99.2 5.9E-09 1.3E-13 98.9 23.0 175 80-275 30-228 (243)
133 COG3898 Uncharacterized membra 99.2 3.5E-07 7.6E-12 87.3 32.4 296 122-430 90-391 (531)
134 KOG1941 Acetylcholine receptor 99.2 5.8E-09 1.3E-13 98.1 20.1 318 83-432 7-361 (518)
135 KOG1941 Acetylcholine receptor 99.1 2.6E-08 5.7E-13 93.8 24.0 317 47-397 5-360 (518)
136 PF13525 YfiO: Outer membrane 99.1 7.4E-09 1.6E-13 96.0 20.5 175 81-276 4-195 (203)
137 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.9E-09 4.2E-14 91.1 14.4 105 335-439 3-113 (119)
138 PF14938 SNAP: Soluble NSF att 99.1 2.3E-09 5E-14 105.2 16.8 181 63-259 30-230 (282)
139 COG4785 NlpI Lipoprotein NlpI, 99.1 6.3E-09 1.4E-13 90.9 16.6 105 156-260 64-168 (297)
140 KOG2053 Mitochondrial inherita 99.1 6.6E-06 1.4E-10 87.2 41.7 202 49-258 10-259 (932)
141 COG4235 Cytochrome c biogenesi 99.1 3.7E-09 8E-14 98.8 16.0 122 316-437 138-262 (287)
142 TIGR02795 tol_pal_ybgF tol-pal 99.1 3.2E-09 6.9E-14 89.8 14.6 105 48-152 2-112 (119)
143 PF14938 SNAP: Soluble NSF att 99.1 8.4E-09 1.8E-13 101.2 19.1 182 232-443 42-237 (282)
144 CHL00033 ycf3 photosystem I as 99.1 5.4E-09 1.2E-13 94.2 15.6 124 59-182 10-138 (168)
145 KOG1070 rRNA processing protei 99.1 1.1E-07 2.5E-12 104.1 27.9 228 207-438 1440-1670(1710)
146 PF13414 TPR_11: TPR repeat; P 99.1 8.5E-10 1.8E-14 82.6 8.6 67 367-433 2-69 (69)
147 CHL00033 ycf3 photosystem I as 99.0 7E-09 1.5E-13 93.5 15.4 104 335-438 36-156 (168)
148 cd00189 TPR Tetratricopeptide 99.0 3.3E-09 7.1E-14 85.6 12.0 99 336-434 2-100 (100)
149 COG4235 Cytochrome c biogenesi 99.0 8.7E-09 1.9E-13 96.3 15.9 122 281-402 137-261 (287)
150 PRK02603 photosystem I assembl 99.0 8.7E-09 1.9E-13 93.1 15.1 119 298-436 33-154 (172)
151 KOG4648 Uncharacterized conser 99.0 2.1E-10 4.6E-15 106.8 4.2 107 51-157 100-206 (536)
152 PRK10803 tol-pal system protei 99.0 2E-08 4.4E-13 95.8 17.6 107 46-152 140-253 (263)
153 KOG2300 Uncharacterized conser 99.0 1.6E-05 3.4E-10 78.5 36.8 384 48-437 7-520 (629)
154 PF13414 TPR_11: TPR repeat; P 99.0 1.9E-09 4E-14 80.8 8.2 67 333-399 2-69 (69)
155 PF09976 TPR_21: Tetratricopep 99.0 3.1E-08 6.7E-13 86.6 16.9 117 312-429 23-145 (145)
156 PRK10153 DNA-binding transcrip 99.0 2.3E-08 5E-13 105.2 18.9 143 295-438 332-489 (517)
157 COG0457 NrfG FOG: TPR repeat [ 99.0 2.9E-06 6.2E-11 81.8 32.9 203 160-400 62-268 (291)
158 COG0457 NrfG FOG: TPR repeat [ 99.0 2.4E-06 5.1E-11 82.4 31.8 223 205-434 37-268 (291)
159 COG4785 NlpI Lipoprotein NlpI, 99.0 1.1E-07 2.5E-12 83.2 19.0 203 81-295 64-266 (297)
160 KOG0543 FKBP-type peptidyl-pro 99.0 1.9E-08 4E-13 97.4 15.6 128 304-431 212-355 (397)
161 PF12895 Apc3: Anaphase-promot 99.0 1.9E-09 4.1E-14 84.2 7.2 82 60-142 1-84 (84)
162 cd00189 TPR Tetratricopeptide 99.0 1E-08 2.2E-13 82.7 11.7 99 50-148 2-100 (100)
163 PF13432 TPR_16: Tetratricopep 98.9 3.3E-09 7.1E-14 78.3 7.6 64 373-436 2-65 (65)
164 PRK02603 photosystem I assembl 98.9 3.5E-08 7.6E-13 89.2 15.9 72 81-152 34-108 (172)
165 KOG1070 rRNA processing protei 98.9 4E-07 8.8E-12 100.0 26.1 233 173-413 1440-1681(1710)
166 KOG3081 Vesicle coat complex C 98.9 1.2E-06 2.7E-11 79.7 25.0 168 191-368 108-276 (299)
167 PRK15331 chaperone protein Sic 98.9 2.3E-08 4.9E-13 85.2 13.1 107 43-150 32-138 (165)
168 PF09976 TPR_21: Tetratricopep 98.9 5.6E-08 1.2E-12 85.0 16.2 130 47-184 10-145 (145)
169 PF13432 TPR_16: Tetratricopep 98.9 3.9E-09 8.5E-14 77.8 7.5 64 53-116 2-65 (65)
170 PRK15331 chaperone protein Sic 98.9 1.6E-08 3.4E-13 86.2 11.9 105 331-436 34-138 (165)
171 PF12895 Apc3: Anaphase-promot 98.9 3.2E-09 7E-14 82.9 7.2 81 347-428 2-84 (84)
172 KOG0543 FKBP-type peptidyl-pro 98.9 3.5E-08 7.6E-13 95.6 14.9 132 49-186 209-355 (397)
173 KOG3617 WD40 and TPR repeat-co 98.9 2.2E-06 4.8E-11 89.3 28.4 311 50-394 759-1171(1416)
174 COG4105 ComL DNA uptake lipopr 98.9 1.4E-06 2.9E-11 80.0 24.0 191 44-258 30-237 (254)
175 PRK11906 transcriptional regul 98.9 1.8E-07 4E-12 93.1 19.9 165 229-393 259-432 (458)
176 KOG3081 Vesicle coat complex C 98.9 1.3E-06 2.9E-11 79.4 23.5 256 166-437 17-277 (299)
177 KOG2300 Uncharacterized conser 98.9 3E-05 6.5E-10 76.6 34.1 348 82-432 7-475 (629)
178 PRK11906 transcriptional regul 98.9 1.7E-07 3.6E-12 93.4 19.3 147 304-450 259-420 (458)
179 COG3898 Uncharacterized membra 98.9 1.1E-05 2.5E-10 77.3 30.5 271 47-397 119-392 (531)
180 PRK10803 tol-pal system protei 98.9 6.7E-08 1.4E-12 92.3 15.7 106 334-439 142-254 (263)
181 PRK10153 DNA-binding transcrip 98.9 1.1E-07 2.3E-12 100.3 18.1 144 75-226 330-488 (517)
182 COG1729 Uncharacterized protei 98.9 2E-07 4.4E-12 86.2 17.5 107 47-153 140-252 (262)
183 KOG4648 Uncharacterized conser 98.9 2.2E-09 4.7E-14 100.1 4.6 241 160-441 100-340 (536)
184 KOG1914 mRNA cleavage and poly 98.8 0.00018 3.9E-09 72.4 38.5 415 42-463 14-497 (656)
185 KOG2471 TPR repeat-containing 98.8 1.3E-05 2.8E-10 79.0 28.4 262 171-433 220-650 (696)
186 KOG2471 TPR repeat-containing 98.8 3.1E-06 6.6E-11 83.3 23.9 158 46-203 204-381 (696)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.2E-07 4.8E-12 93.3 16.7 121 305-428 174-294 (395)
188 KOG2053 Mitochondrial inherita 98.8 4.6E-05 9.9E-10 81.0 33.0 287 93-393 20-333 (932)
189 PF13512 TPR_18: Tetratricopep 98.7 3E-07 6.4E-12 76.8 13.4 108 45-152 7-135 (142)
190 KOG4234 TPR repeat-containing 98.7 9.7E-08 2.1E-12 82.5 10.7 105 337-441 98-207 (271)
191 PF12688 TPR_5: Tetratrico pep 98.7 3.3E-07 7.2E-12 75.4 13.5 94 302-395 3-102 (120)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.8E-07 6.1E-12 92.5 15.8 115 277-394 180-294 (395)
193 PF14559 TPR_19: Tetratricopep 98.7 4.3E-08 9.2E-13 73.1 7.1 67 58-124 1-67 (68)
194 COG4105 ComL DNA uptake lipopr 98.7 5.2E-06 1.1E-10 76.2 21.7 173 81-274 33-219 (254)
195 KOG4234 TPR repeat-containing 98.7 3.1E-07 6.7E-12 79.5 12.4 107 49-155 96-207 (271)
196 KOG1914 mRNA cleavage and poly 98.7 0.00054 1.2E-08 69.0 40.8 376 44-435 49-505 (656)
197 PF12688 TPR_5: Tetratrico pep 98.7 5.4E-07 1.2E-11 74.2 13.4 96 335-430 2-103 (120)
198 COG1729 Uncharacterized protei 98.7 5.3E-07 1.1E-11 83.5 13.9 105 337-441 144-254 (262)
199 PF14559 TPR_19: Tetratricopep 98.6 1E-07 2.2E-12 71.0 7.0 59 347-405 4-62 (68)
200 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.7E-07 3.7E-12 93.1 10.2 68 330-397 71-141 (453)
201 COG4700 Uncharacterized protei 98.6 6.6E-06 1.4E-10 70.6 17.8 148 281-430 71-221 (251)
202 PF07079 DUF1347: Protein of u 98.6 0.00091 2E-08 66.1 41.6 373 51-428 9-521 (549)
203 PF13371 TPR_9: Tetratricopept 98.6 3.7E-07 8E-12 69.1 8.5 69 55-123 2-70 (73)
204 PF13371 TPR_9: Tetratricopept 98.6 4.3E-07 9.3E-12 68.8 8.7 63 376-438 3-65 (73)
205 KOG1586 Protein required for f 98.5 2E-05 4.3E-10 70.4 18.7 107 338-444 117-237 (288)
206 PF13512 TPR_18: Tetratricopep 98.5 4.8E-06 1E-10 69.6 14.0 120 301-439 11-136 (142)
207 KOG4555 TPR repeat-containing 98.5 2.7E-06 5.9E-11 68.2 11.5 98 338-435 47-148 (175)
208 KOG2796 Uncharacterized conser 98.5 0.00016 3.5E-09 65.9 24.1 226 191-436 69-320 (366)
209 KOG2796 Uncharacterized conser 98.5 0.00023 4.9E-09 64.9 25.0 231 81-366 68-318 (366)
210 KOG1586 Protein required for f 98.5 2.5E-05 5.4E-10 69.8 17.9 140 160-300 77-229 (288)
211 KOG4507 Uncharacterized conser 98.5 2.7E-05 5.8E-10 78.5 20.1 104 341-444 614-718 (886)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2.6E-06 5.5E-11 85.0 12.9 81 31-111 58-141 (453)
213 COG4700 Uncharacterized protei 98.4 7.3E-05 1.6E-09 64.4 19.7 150 95-253 69-221 (251)
214 KOG4555 TPR repeat-containing 98.4 1.3E-05 2.8E-10 64.4 14.1 98 303-400 46-147 (175)
215 PF13424 TPR_12: Tetratricopep 98.4 5.4E-07 1.2E-11 69.2 4.9 64 368-431 5-75 (78)
216 PF06552 TOM20_plant: Plant sp 98.4 4.1E-06 8.8E-11 72.2 10.2 102 316-444 7-122 (186)
217 KOG3616 Selective LIM binding 98.4 0.0013 2.9E-08 68.4 29.8 344 58-429 454-909 (1636)
218 KOG1585 Protein required for f 98.3 8.9E-05 1.9E-09 66.8 18.8 199 228-459 34-248 (308)
219 KOG4642 Chaperone-dependent E3 98.3 1.6E-06 3.5E-11 77.4 7.7 100 46-145 8-107 (284)
220 KOG1585 Protein required for f 98.3 0.00021 4.5E-09 64.5 20.1 83 281-363 125-219 (308)
221 PF13424 TPR_12: Tetratricopep 98.3 1.3E-06 2.7E-11 67.1 5.6 74 113-186 2-75 (78)
222 KOG3616 Selective LIM binding 98.3 0.00068 1.5E-08 70.5 26.0 32 402-433 995-1026(1636)
223 PF10300 DUF3808: Protein of u 98.2 0.0017 3.7E-08 68.4 29.3 154 278-431 200-376 (468)
224 KOG1258 mRNA processing protei 98.2 0.0094 2E-07 61.6 36.5 344 64-423 61-421 (577)
225 PF06552 TOM20_plant: Plant sp 98.2 1.5E-05 3.3E-10 68.8 10.6 114 241-377 7-123 (186)
226 PF10300 DUF3808: Protein of u 98.2 0.0012 2.6E-08 69.5 27.0 165 232-397 195-376 (468)
227 PF08631 SPO22: Meiosis protei 98.2 0.005 1.1E-07 60.3 29.1 131 126-256 3-152 (278)
228 KOG4507 Uncharacterized conser 98.2 0.00025 5.3E-09 71.9 19.2 108 306-413 613-721 (886)
229 PF02259 FAT: FAT domain; Int 98.1 0.003 6.5E-08 64.8 28.1 293 54-366 4-341 (352)
230 PF10345 Cohesin_load: Cohesin 98.1 0.028 6.1E-07 61.9 37.4 367 64-432 37-524 (608)
231 PF04184 ST7: ST7 protein; In 98.1 0.00048 1E-08 69.2 20.0 170 53-229 173-384 (539)
232 PF13281 DUF4071: Domain of un 98.1 0.0033 7.2E-08 62.5 25.7 125 190-315 140-274 (374)
233 PF05843 Suf: Suppressor of fo 98.1 9.3E-05 2E-09 72.4 14.7 135 302-436 3-141 (280)
234 KOG0545 Aryl-hydrocarbon recep 98.1 6.6E-05 1.4E-09 67.5 12.2 107 46-152 176-300 (329)
235 KOG2610 Uncharacterized conser 98.1 0.00033 7.2E-09 66.1 17.0 150 279-428 116-273 (491)
236 KOG2610 Uncharacterized conser 98.0 0.0039 8.4E-08 59.2 23.7 166 83-252 104-274 (491)
237 KOG4642 Chaperone-dependent E3 98.0 4.2E-05 9.1E-10 68.6 10.3 91 307-397 17-107 (284)
238 PF04184 ST7: ST7 protein; In 98.0 0.00056 1.2E-08 68.7 19.2 105 335-439 260-383 (539)
239 KOG0545 Aryl-hydrocarbon recep 98.0 9.7E-05 2.1E-09 66.5 12.5 75 367-441 229-303 (329)
240 COG2909 MalT ATP-dependent tra 98.0 0.021 4.7E-07 61.7 31.9 298 116-427 347-684 (894)
241 PF02259 FAT: FAT domain; Int 98.0 0.0068 1.5E-07 62.1 28.5 138 297-434 143-341 (352)
242 KOG1550 Extracellular protein 98.0 0.0065 1.4E-07 65.6 28.6 286 98-435 228-542 (552)
243 KOG0985 Vesicle coat protein c 98.0 0.037 8.1E-07 60.4 31.9 234 61-320 1088-1374(1666)
244 PF13428 TPR_14: Tetratricopep 98.0 2.1E-05 4.6E-10 52.1 5.4 40 370-409 3-42 (44)
245 PF10345 Cohesin_load: Cohesin 98.0 0.052 1.1E-06 59.8 42.0 410 46-460 57-599 (608)
246 KOG1550 Extracellular protein 97.9 0.012 2.6E-07 63.7 28.6 176 64-254 228-426 (552)
247 PF13428 TPR_14: Tetratricopep 97.9 2.9E-05 6.2E-10 51.5 5.2 42 335-376 2-43 (44)
248 KOG0376 Serine-threonine phosp 97.9 2.3E-05 4.9E-10 78.0 6.8 109 48-156 4-112 (476)
249 COG2909 MalT ATP-dependent tra 97.9 0.067 1.4E-06 58.1 35.3 304 82-394 347-685 (894)
250 PF05843 Suf: Suppressor of fo 97.8 0.00057 1.2E-08 66.9 15.5 129 274-402 9-141 (280)
251 KOG0985 Vesicle coat protein c 97.8 0.077 1.7E-06 58.1 32.6 62 189-255 1102-1163(1666)
252 PF13431 TPR_17: Tetratricopep 97.8 2.1E-05 4.6E-10 48.4 3.3 32 391-422 2-33 (34)
253 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00013 2.7E-09 69.0 9.8 102 47-148 80-185 (390)
254 PF13281 DUF4071: Domain of un 97.8 0.0072 1.6E-07 60.2 22.6 178 81-259 140-339 (374)
255 PF08631 SPO22: Meiosis protei 97.8 0.037 8.1E-07 54.2 27.6 160 93-253 4-185 (278)
256 KOG0890 Protein kinase of the 97.8 0.02 4.3E-07 68.3 29.0 133 241-375 1645-1796(2382)
257 PF13431 TPR_17: Tetratricopep 97.8 2.6E-05 5.6E-10 48.0 3.1 32 357-388 2-33 (34)
258 COG3118 Thioredoxin domain-con 97.8 0.0052 1.1E-07 57.9 19.4 156 83-245 135-292 (304)
259 KOG0530 Protein farnesyltransf 97.8 0.022 4.8E-07 52.4 22.7 118 133-256 60-178 (318)
260 PF00515 TPR_1: Tetratricopept 97.7 5.8E-05 1.3E-09 46.8 4.5 33 403-435 2-34 (34)
261 KOG0376 Serine-threonine phosp 97.7 5.6E-05 1.2E-09 75.3 6.5 108 305-412 9-116 (476)
262 COG3118 Thioredoxin domain-con 97.7 0.0021 4.6E-08 60.4 16.2 157 47-211 133-292 (304)
263 KOG0890 Protein kinase of the 97.7 0.06 1.3E-06 64.5 31.1 107 332-440 1668-1793(2382)
264 KOG0530 Protein farnesyltransf 97.7 0.013 2.8E-07 53.9 20.5 164 176-346 62-233 (318)
265 PF07719 TPR_2: Tetratricopept 97.7 9.5E-05 2.1E-09 45.8 5.0 33 403-435 2-34 (34)
266 PRK13184 pknD serine/threonine 97.7 0.092 2E-06 59.3 31.0 333 53-395 480-867 (932)
267 KOG1308 Hsp70-interacting prot 97.6 9.8E-05 2.1E-09 70.1 5.9 98 51-148 117-214 (377)
268 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.094 2E-06 52.3 33.9 142 43-186 37-190 (660)
269 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00097 2.1E-08 63.2 11.4 102 156-257 80-185 (390)
270 COG2976 Uncharacterized protei 97.5 0.0089 1.9E-07 52.6 15.5 117 318-435 70-192 (207)
271 PF00515 TPR_1: Tetratricopept 97.5 0.00028 6.1E-09 43.7 4.8 31 370-400 3-33 (34)
272 PF03704 BTAD: Bacterial trans 97.4 0.0041 9E-08 54.3 13.5 96 49-144 7-124 (146)
273 PF07719 TPR_2: Tetratricopept 97.4 0.00042 9.2E-09 42.8 5.1 31 370-400 3-33 (34)
274 PRK15180 Vi polysaccharide bio 97.4 0.18 4E-06 50.6 27.4 136 48-190 289-424 (831)
275 PF07079 DUF1347: Protein of u 97.4 0.18 3.9E-06 50.5 36.4 335 54-394 51-521 (549)
276 KOG1308 Hsp70-interacting prot 97.4 0.00019 4.2E-09 68.2 4.4 85 313-397 127-211 (377)
277 KOG1258 mRNA processing protei 97.4 0.25 5.5E-06 51.5 39.3 377 52-448 83-487 (577)
278 KOG2396 HAT (Half-A-TPR) repea 97.4 0.22 4.8E-06 50.6 37.0 96 335-430 461-558 (568)
279 KOG0128 RNA-binding protein SA 97.3 0.33 7.1E-06 52.4 35.9 368 62-431 93-526 (881)
280 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.21 4.5E-06 49.9 32.8 150 71-222 31-192 (660)
281 PF03704 BTAD: Bacterial trans 97.3 0.006 1.3E-07 53.3 13.2 62 369-430 63-124 (146)
282 COG0790 FOG: TPR repeat, SEL1 97.3 0.11 2.3E-06 51.7 23.5 128 282-416 93-236 (292)
283 PF08424 NRDE-2: NRDE-2, neces 97.3 0.032 6.9E-07 55.8 19.4 135 173-330 47-184 (321)
284 PF13181 TPR_8: Tetratricopept 97.2 0.00055 1.2E-08 42.3 4.1 32 403-434 2-33 (34)
285 COG2976 Uncharacterized protei 97.2 0.024 5.3E-07 50.0 14.8 120 100-224 70-192 (207)
286 PF08424 NRDE-2: NRDE-2, neces 97.2 0.034 7.3E-07 55.7 18.2 114 69-186 6-131 (321)
287 KOG2041 WD40 repeat protein [G 97.1 0.46 1E-05 50.1 25.8 139 57-217 672-822 (1189)
288 COG0790 FOG: TPR repeat, SEL1 97.1 0.34 7.4E-06 48.0 25.4 166 168-341 52-230 (292)
289 COG5159 RPN6 26S proteasome re 97.0 0.3 6.5E-06 45.8 21.7 204 52-256 7-237 (421)
290 PF04910 Tcf25: Transcriptiona 97.0 0.041 8.8E-07 55.7 16.7 143 292-434 32-225 (360)
291 KOG3783 Uncharacterized conser 97.0 0.35 7.5E-06 49.8 22.7 95 99-198 250-344 (546)
292 KOG1464 COP9 signalosome, subu 96.9 0.068 1.5E-06 49.4 15.5 196 60-258 39-264 (440)
293 KOG3824 Huntingtin interacting 96.8 0.0038 8.3E-08 58.4 7.1 78 47-124 115-192 (472)
294 PF04781 DUF627: Protein of un 96.8 0.0088 1.9E-07 47.6 8.1 92 54-145 2-107 (111)
295 PF13176 TPR_7: Tetratricopept 96.8 0.0012 2.6E-08 41.4 2.6 27 405-431 2-28 (36)
296 KOG1463 26S proteasome regulat 96.8 0.56 1.2E-05 45.3 22.4 280 51-331 7-318 (411)
297 PF13181 TPR_8: Tetratricopept 96.8 0.0026 5.7E-08 39.2 4.0 28 337-364 4-31 (34)
298 KOG3824 Huntingtin interacting 96.7 0.0055 1.2E-07 57.4 7.6 64 379-442 127-190 (472)
299 PRK11619 lytic murein transgly 96.7 1.3 2.8E-05 48.8 33.5 350 48-431 33-436 (644)
300 PF04910 Tcf25: Transcriptiona 96.7 0.09 2E-06 53.2 16.8 75 74-148 32-135 (360)
301 PF13174 TPR_6: Tetratricopept 96.7 0.0034 7.3E-08 38.3 4.0 31 404-434 2-32 (33)
302 PRK15180 Vi polysaccharide bio 96.7 0.0091 2E-07 59.5 8.8 142 312-453 301-442 (831)
303 PF09613 HrpB1_HrpK: Bacterial 96.6 0.16 3.6E-06 43.7 15.0 100 47-147 9-108 (160)
304 KOG2041 WD40 repeat protein [G 96.5 1.4 3.1E-05 46.7 26.9 181 45-251 689-878 (1189)
305 PF13174 TPR_6: Tetratricopept 96.4 0.0061 1.3E-07 37.1 4.0 29 85-113 3-31 (33)
306 PRK11619 lytic murein transgly 96.3 2.4 5.1E-05 46.8 34.5 318 83-430 34-374 (644)
307 PF14561 TPR_20: Tetratricopep 96.2 0.059 1.3E-06 42.0 9.6 69 67-135 7-77 (90)
308 COG3914 Spy Predicted O-linked 96.2 0.35 7.6E-06 50.3 17.4 133 313-445 44-185 (620)
309 KOG3783 Uncharacterized conser 96.2 1.9 4.1E-05 44.7 26.8 66 370-435 451-524 (546)
310 PF09613 HrpB1_HrpK: Bacterial 96.2 0.11 2.3E-06 44.9 11.6 97 336-433 12-108 (160)
311 PF12968 DUF3856: Domain of Un 96.2 0.25 5.4E-06 39.7 12.5 87 345-431 20-129 (144)
312 PF13176 TPR_7: Tetratricopept 96.2 0.012 2.6E-07 36.8 4.4 28 370-397 1-28 (36)
313 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.018 4E-07 39.3 5.2 36 404-439 3-38 (53)
314 KOG1464 COP9 signalosome, subu 96.0 0.52 1.1E-05 43.8 15.8 194 95-295 40-260 (440)
315 KOG1538 Uncharacterized conser 96.0 0.95 2E-05 47.5 19.1 28 47-74 584-611 (1081)
316 PRK10941 hypothetical protein; 96.0 0.084 1.8E-06 50.7 11.3 65 339-403 186-250 (269)
317 PF09986 DUF2225: Uncharacteri 96.0 0.084 1.8E-06 48.9 10.9 92 129-220 90-194 (214)
318 PRK10941 hypothetical protein; 96.0 0.12 2.7E-06 49.5 12.2 67 195-261 185-251 (269)
319 PF14561 TPR_20: Tetratricopep 95.9 0.069 1.5E-06 41.6 8.7 48 388-435 8-55 (90)
320 COG5159 RPN6 26S proteasome re 95.9 1.6 3.4E-05 41.2 20.2 209 86-296 7-236 (421)
321 TIGR02561 HrpB1_HrpK type III 95.9 0.46 1E-05 40.3 13.7 86 48-133 10-95 (153)
322 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.038 8.3E-07 37.8 6.1 34 85-118 4-37 (53)
323 COG4976 Predicted methyltransf 95.9 0.015 3.2E-07 52.4 5.1 66 376-441 3-68 (287)
324 KOG1463 26S proteasome regulat 95.9 1.9 4.1E-05 41.8 24.5 43 358-400 275-319 (411)
325 KOG1538 Uncharacterized conser 95.8 1.6 3.5E-05 45.9 19.9 49 56-109 564-612 (1081)
326 PF04781 DUF627: Protein of un 95.8 0.13 2.8E-06 41.1 9.5 103 306-431 2-107 (111)
327 PF12968 DUF3856: Domain of Un 95.7 0.36 7.8E-06 38.8 11.6 95 51-145 12-129 (144)
328 smart00028 TPR Tetratricopepti 95.5 0.021 4.6E-07 34.1 3.7 31 404-434 3-33 (34)
329 COG4649 Uncharacterized protei 95.4 1.6 3.5E-05 38.0 16.0 132 310-442 68-206 (221)
330 COG1747 Uncharacterized N-term 95.3 4 8.7E-05 42.0 22.3 81 171-254 80-160 (711)
331 TIGR02561 HrpB1_HrpK type III 95.2 0.31 6.7E-06 41.3 10.3 72 347-418 23-94 (153)
332 COG4649 Uncharacterized protei 95.2 1.9 4.2E-05 37.5 16.5 27 226-252 168-194 (221)
333 KOG1839 Uncharacterized protei 95.1 0.18 4E-06 57.3 11.4 162 270-431 936-1128(1236)
334 PF10602 RPN7: 26S proteasome 95.1 0.32 6.9E-06 43.7 11.0 102 83-185 37-141 (177)
335 KOG2396 HAT (Half-A-TPR) repea 95.0 5 0.00011 41.3 33.9 348 47-397 104-559 (568)
336 KOG3364 Membrane protein invol 94.9 0.27 5.8E-06 40.7 9.0 73 367-439 31-108 (149)
337 PF09986 DUF2225: Uncharacteri 94.9 0.26 5.7E-06 45.7 10.3 29 335-363 166-194 (214)
338 KOG1310 WD40 repeat protein [G 94.9 0.19 4.2E-06 51.1 9.8 104 47-150 373-479 (758)
339 smart00028 TPR Tetratricopepti 94.9 0.049 1.1E-06 32.4 3.9 27 338-364 5-31 (34)
340 KOG1310 WD40 repeat protein [G 94.5 0.12 2.6E-06 52.6 7.3 86 349-434 389-477 (758)
341 PRK13184 pknD serine/threonine 94.5 12 0.00025 43.1 26.8 135 123-258 482-624 (932)
342 KOG1839 Uncharacterized protei 94.4 0.52 1.1E-05 53.9 12.8 136 46-185 930-1085(1236)
343 COG4976 Predicted methyltransf 94.4 0.074 1.6E-06 48.1 5.0 61 91-151 4-64 (287)
344 PF10602 RPN7: 26S proteasome 94.3 0.63 1.4E-05 41.8 11.1 64 192-255 37-103 (177)
345 KOG4814 Uncharacterized conser 94.3 3 6.5E-05 44.0 16.8 99 156-254 353-457 (872)
346 KOG3364 Membrane protein invol 94.3 1.1 2.4E-05 37.2 11.0 73 334-406 32-109 (149)
347 COG1747 Uncharacterized N-term 93.7 9.6 0.00021 39.4 22.8 95 190-294 65-159 (711)
348 PF13374 TPR_10: Tetratricopep 93.7 0.15 3.2E-06 32.9 4.5 29 403-431 3-31 (42)
349 KOG4814 Uncharacterized conser 93.6 8.8 0.00019 40.8 18.5 101 119-220 357-457 (872)
350 KOG0529 Protein geranylgeranyl 93.6 7.3 0.00016 39.2 17.3 162 281-442 44-235 (421)
351 KOG3807 Predicted membrane pro 93.5 7.6 0.00017 37.6 19.4 147 83-248 185-334 (556)
352 PF13374 TPR_10: Tetratricopep 93.2 0.22 4.9E-06 32.0 4.7 29 369-397 3-31 (42)
353 PF10579 Rapsyn_N: Rapsyn N-te 92.9 0.97 2.1E-05 33.6 7.7 63 48-110 6-71 (80)
354 KOG2422 Uncharacterized conser 92.9 8.1 0.00017 40.6 16.9 103 61-163 251-390 (665)
355 COG5191 Uncharacterized conser 92.7 0.21 4.6E-06 47.3 5.3 82 325-406 98-180 (435)
356 KOG0529 Protein geranylgeranyl 92.6 5 0.00011 40.3 14.6 131 281-411 90-238 (421)
357 KOG2422 Uncharacterized conser 92.5 7.7 0.00017 40.7 16.2 155 171-332 252-451 (665)
358 COG3629 DnrI DNA-binding trans 92.4 3.1 6.7E-05 40.0 12.8 64 82-145 153-216 (280)
359 KOG2063 Vacuolar assembly/sort 92.1 22 0.00048 40.2 20.4 113 159-271 506-638 (877)
360 PF15015 NYD-SP12_N: Spermatog 92.0 1.7 3.7E-05 43.3 10.6 91 52-142 180-288 (569)
361 PF04053 Coatomer_WDAD: Coatom 92.0 7.9 0.00017 40.6 16.3 28 299-326 346-373 (443)
362 PF04190 DUF410: Protein of un 91.7 13 0.00028 35.8 17.1 26 298-323 88-113 (260)
363 COG2912 Uncharacterized conser 91.7 1.6 3.4E-05 41.4 9.7 69 194-262 184-252 (269)
364 PF04053 Coatomer_WDAD: Coatom 91.7 9.3 0.0002 40.0 16.4 163 51-251 264-428 (443)
365 COG5191 Uncharacterized conser 91.6 0.39 8.5E-06 45.7 5.6 90 287-376 94-184 (435)
366 PF09670 Cas_Cas02710: CRISPR- 91.4 6 0.00013 40.6 14.5 64 48-111 131-198 (379)
367 KOG2581 26S proteasome regulat 91.2 9.8 0.00021 38.1 14.7 199 58-258 40-280 (493)
368 PF12862 Apc5: Anaphase-promot 91.2 2.2 4.8E-05 33.6 9.0 61 126-186 8-70 (94)
369 PF07720 TPR_3: Tetratricopept 90.5 0.98 2.1E-05 28.0 4.9 31 404-434 3-35 (36)
370 PF04190 DUF410: Protein of un 90.3 18 0.00039 34.9 19.0 34 221-254 136-170 (260)
371 COG2912 Uncharacterized conser 90.1 2.4 5.2E-05 40.2 9.3 60 343-402 190-249 (269)
372 COG3629 DnrI DNA-binding trans 90.0 1.6 3.5E-05 41.9 8.4 65 47-111 152-216 (280)
373 KOG3807 Predicted membrane pro 89.5 22 0.00047 34.7 19.1 58 195-254 188-245 (556)
374 PF00244 14-3-3: 14-3-3 protei 89.5 19 0.00042 34.1 16.7 62 49-110 2-65 (236)
375 PF07721 TPR_4: Tetratricopept 89.4 0.51 1.1E-05 26.7 2.8 22 404-425 3-24 (26)
376 PF07721 TPR_4: Tetratricopept 89.2 0.58 1.3E-05 26.5 3.0 23 370-392 3-25 (26)
377 KOG0128 RNA-binding protein SA 88.9 42 0.00091 37.2 35.6 380 47-428 112-560 (881)
378 PF10579 Rapsyn_N: Rapsyn N-te 88.3 5.2 0.00011 29.8 8.0 47 346-392 18-67 (80)
379 PF10516 SHNi-TPR: SHNi-TPR; 88.2 0.89 1.9E-05 28.6 3.5 28 336-363 3-30 (38)
380 PF11207 DUF2989: Protein of u 88.1 6.8 0.00015 35.5 10.3 55 367-422 140-198 (203)
381 PF04348 LppC: LppC putative l 88.1 0.98 2.1E-05 48.6 6.1 257 301-566 25-299 (536)
382 PF04097 Nic96: Nup93/Nic96; 88.0 48 0.001 36.7 22.4 28 46-73 109-136 (613)
383 KOG2063 Vacuolar assembly/sort 88.0 49 0.0011 37.6 18.9 118 85-202 507-637 (877)
384 PF12862 Apc5: Anaphase-promot 88.0 2.3 5E-05 33.5 6.7 23 235-257 8-30 (94)
385 PF07720 TPR_3: Tetratricopept 87.9 2.1 4.7E-05 26.5 5.1 20 371-390 4-23 (36)
386 PF15015 NYD-SP12_N: Spermatog 87.8 4.3 9.3E-05 40.7 9.6 94 123-216 183-287 (569)
387 COG4941 Predicted RNA polymera 87.7 30 0.00064 34.0 16.2 158 280-438 210-401 (415)
388 PF10516 SHNi-TPR: SHNi-TPR; 87.3 1 2.3E-05 28.3 3.4 29 403-431 2-30 (38)
389 PF11207 DUF2989: Protein of u 86.9 8.4 0.00018 34.9 10.2 73 172-245 121-198 (203)
390 PF11817 Foie-gras_1: Foie gra 86.7 30 0.00066 33.1 15.1 28 159-186 12-39 (247)
391 PF12739 TRAPPC-Trs85: ER-Golg 86.7 31 0.00067 36.1 16.1 54 118-172 210-263 (414)
392 smart00299 CLH Clathrin heavy 86.7 19 0.00041 30.7 12.6 47 202-249 18-64 (140)
393 COG4455 ImpE Protein of avirul 86.6 26 0.00056 32.2 13.2 62 55-116 8-69 (273)
394 PF12739 TRAPPC-Trs85: ER-Golg 86.1 35 0.00075 35.7 16.1 25 409-433 377-401 (414)
395 KOG0889 Histone acetyltransfer 85.8 1.3E+02 0.0029 39.6 24.3 131 302-432 2738-2884(3550)
396 PF14863 Alkyl_sulf_dimr: Alky 85.6 2.8 6.1E-05 35.8 6.3 51 47-97 69-119 (141)
397 KOG1920 IkappaB kinase complex 85.2 69 0.0015 37.3 18.0 24 304-327 1003-1026(1265)
398 COG4941 Predicted RNA polymera 84.8 42 0.00091 33.0 17.1 161 99-262 213-402 (415)
399 PF10373 EST1_DNA_bind: Est1 D 84.2 3.3 7.1E-05 40.6 7.3 62 319-380 1-62 (278)
400 PF00244 14-3-3: 14-3-3 protei 83.7 19 0.00041 34.2 11.7 30 194-223 4-33 (236)
401 PF04097 Nic96: Nup93/Nic96; 83.6 77 0.0017 35.1 18.0 91 87-183 263-353 (613)
402 COG3947 Response regulator con 82.9 5.4 0.00012 38.0 7.4 57 372-428 283-339 (361)
403 KOG1920 IkappaB kinase complex 82.8 74 0.0016 37.0 17.0 23 372-394 1003-1025(1265)
404 KOG2114 Vacuolar assembly/sort 82.4 27 0.00059 38.6 13.2 92 342-437 498-596 (933)
405 KOG0276 Vesicle coat complex C 82.2 19 0.00041 38.1 11.5 133 308-469 645-777 (794)
406 PF10373 EST1_DNA_bind: Est1 D 81.9 5.8 0.00012 38.8 8.0 62 285-346 1-62 (278)
407 TIGR03504 FimV_Cterm FimV C-te 81.5 4.2 9.2E-05 26.6 4.4 24 406-429 3-26 (44)
408 COG3947 Response regulator con 81.4 7.3 0.00016 37.2 7.6 60 336-395 281-340 (361)
409 KOG0546 HSP90 co-chaperone CPR 81.3 2.4 5.3E-05 41.5 4.7 64 374-437 281-344 (372)
410 KOG2581 26S proteasome regulat 80.6 69 0.0015 32.5 20.4 141 47-190 123-280 (493)
411 cd03811 GT1_WabH_like This fam 80.5 7.8 0.00017 38.9 8.7 192 489-684 1-216 (353)
412 KOG0546 HSP90 co-chaperone CPR 80.3 4 8.7E-05 40.0 5.8 82 334-415 275-356 (372)
413 PF09670 Cas_Cas02710: CRISPR- 80.1 62 0.0014 33.3 14.8 64 157-220 131-198 (379)
414 KOG4014 Uncharacterized conser 79.7 44 0.00096 29.7 13.8 49 381-431 181-233 (248)
415 KOG0276 Vesicle coat complex C 79.5 37 0.00079 36.2 12.5 153 57-251 595-747 (794)
416 COG4455 ImpE Protein of avirul 79.3 52 0.0011 30.3 13.3 63 89-151 8-70 (273)
417 TIGR03504 FimV_Cterm FimV C-te 78.9 4.7 0.0001 26.4 4.0 25 52-76 3-27 (44)
418 TIGR02710 CRISPR-associated pr 77.9 69 0.0015 32.6 13.8 58 50-107 132-196 (380)
419 PF10255 Paf67: RNA polymerase 77.6 71 0.0015 32.9 13.9 61 302-362 124-192 (404)
420 KOG4014 Uncharacterized conser 76.8 54 0.0012 29.2 15.6 192 188-398 31-234 (248)
421 smart00386 HAT HAT (Half-A-TPR 76.4 6.4 0.00014 23.1 4.1 27 63-89 2-28 (33)
422 smart00386 HAT HAT (Half-A-TPR 75.8 7.7 0.00017 22.7 4.4 19 386-404 5-23 (33)
423 PF11817 Foie-gras_1: Foie gra 75.7 24 0.00053 33.7 9.9 62 191-252 178-245 (247)
424 PF12854 PPR_1: PPR repeat 73.8 9.5 0.00021 23.2 4.3 25 334-358 7-31 (34)
425 smart00299 CLH Clathrin heavy 73.5 56 0.0012 27.8 15.7 50 56-106 15-64 (140)
426 PF12854 PPR_1: PPR repeat 73.0 10 0.00022 23.0 4.3 26 225-250 7-32 (34)
427 KOG2280 Vacuolar assembly/sort 71.0 1.7E+02 0.0038 32.3 23.8 85 56-140 445-531 (829)
428 cd03820 GT1_amsD_like This fam 70.3 17 0.00037 36.3 8.0 180 489-684 1-205 (348)
429 KOG2114 Vacuolar assembly/sort 69.8 1.9E+02 0.0042 32.4 26.8 62 49-111 335-397 (933)
430 PF07163 Pex26: Pex26 protein; 68.9 1.1E+02 0.0025 29.4 14.5 130 48-180 35-181 (309)
431 KOG0889 Histone acetyltransfer 68.8 4E+02 0.0087 35.7 22.3 111 334-444 2736-2854(3550)
432 PF13041 PPR_2: PPR repeat fam 68.6 27 0.0006 23.2 6.2 27 336-362 5-31 (50)
433 smart00101 14_3_3 14-3-3 homol 68.4 1.1E+02 0.0024 29.1 16.6 56 195-250 5-64 (244)
434 PF13041 PPR_2: PPR repeat fam 68.1 29 0.00064 23.1 6.2 27 193-219 5-31 (50)
435 smart00101 14_3_3 14-3-3 homol 67.8 1.1E+02 0.0025 29.0 17.9 59 50-108 3-65 (244)
436 PF11846 DUF3366: Domain of un 67.3 22 0.00048 32.5 7.3 49 385-434 128-176 (193)
437 KOG4279 Serine/threonine prote 66.6 60 0.0013 35.6 10.6 120 115-240 200-335 (1226)
438 PF09205 DUF1955: Domain of un 66.0 46 0.00099 27.9 7.7 48 348-395 100-147 (161)
439 PF09205 DUF1955: Domain of un 65.7 45 0.00097 28.0 7.6 55 377-431 95-149 (161)
440 COG3014 Uncharacterized protei 65.3 1.5E+02 0.0032 29.4 14.2 192 210-430 40-255 (449)
441 KOG0687 26S proteasome regulat 64.6 1.5E+02 0.0033 29.2 12.3 104 116-221 104-211 (393)
442 PF10255 Paf67: RNA polymerase 64.3 1.8E+02 0.0039 30.0 16.4 60 160-219 125-192 (404)
443 PF14863 Alkyl_sulf_dimr: Alky 63.9 27 0.00058 29.9 6.4 46 372-417 74-119 (141)
444 PRK12798 chemotaxis protein; R 63.1 1.9E+02 0.0041 29.8 21.3 102 49-150 113-219 (421)
445 cd02682 MIT_AAA_Arch MIT: doma 62.0 38 0.00083 25.2 6.1 29 48-76 6-34 (75)
446 cd02680 MIT_calpain7_2 MIT: do 61.5 14 0.0003 27.5 3.7 16 348-363 20-35 (75)
447 KOG4521 Nuclear pore complex, 61.4 1.8E+02 0.004 33.9 13.6 73 166-242 992-1071(1480)
448 COG5187 RPN7 26S proteasome re 61.0 1.6E+02 0.0035 28.4 14.3 171 174-345 42-237 (412)
449 PF01535 PPR: PPR repeat; Int 61.0 15 0.00032 21.2 3.3 16 377-392 9-24 (31)
450 PF01535 PPR: PPR repeat; Int 59.9 15 0.00033 21.1 3.2 25 337-361 3-27 (31)
451 PRK15490 Vi polysaccharide bio 58.5 79 0.0017 34.2 10.0 82 58-141 18-99 (578)
452 KOG0686 COP9 signalosome, subu 58.5 2.2E+02 0.0048 29.1 13.8 97 156-252 149-256 (466)
453 cd02681 MIT_calpain7_1 MIT: do 58.2 17 0.00037 27.2 3.8 16 347-362 19-34 (76)
454 PF07219 HemY_N: HemY protein 58.1 45 0.00097 27.0 6.6 29 49-77 60-88 (108)
455 PF10952 DUF2753: Protein of u 56.7 50 0.0011 27.2 6.3 26 338-363 5-30 (140)
456 KOG0686 COP9 signalosome, subu 56.2 2.4E+02 0.0052 28.9 13.9 137 301-437 151-310 (466)
457 KOG4279 Serine/threonine prote 56.0 1.2E+02 0.0026 33.5 10.6 124 190-315 200-335 (1226)
458 TIGR03362 VI_chp_7 type VI sec 55.9 2.2E+02 0.0047 28.2 18.5 157 51-220 102-279 (301)
459 TIGR02710 CRISPR-associated pr 55.9 2.4E+02 0.0053 28.8 13.6 61 122-182 136-196 (380)
460 KOG0687 26S proteasome regulat 54.9 2.2E+02 0.0049 28.1 12.6 104 225-329 104-210 (393)
461 cd02680 MIT_calpain7_2 MIT: do 54.7 22 0.00049 26.4 3.8 16 171-186 20-35 (75)
462 PRK15490 Vi polysaccharide bio 54.4 1.3E+02 0.0028 32.6 10.9 78 313-392 21-98 (578)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 54.0 1.3E+02 0.0028 25.2 12.8 43 318-360 81-125 (126)
464 PF13226 DUF4034: Domain of un 53.8 1.6E+02 0.0035 28.6 10.5 102 54-155 6-138 (277)
465 TIGR00756 PPR pentatricopeptid 53.2 30 0.00066 20.3 3.9 22 373-394 5-26 (35)
466 PHA02537 M terminase endonucle 52.5 73 0.0016 29.9 7.7 33 403-435 170-211 (230)
467 cd02682 MIT_AAA_Arch MIT: doma 52.1 98 0.0021 23.1 6.8 21 164-184 13-33 (75)
468 KOG4151 Myosin assembly protei 52.0 59 0.0013 35.9 7.9 104 51-154 56-165 (748)
469 TIGR03362 VI_chp_7 type VI sec 51.6 2.5E+02 0.0055 27.8 16.7 147 279-433 112-281 (301)
470 PF11846 DUF3366: Domain of un 51.2 53 0.0011 30.0 6.8 49 208-257 128-176 (193)
471 KOG2836 Protein tyrosine phosp 51.0 6.8 0.00015 32.2 0.7 32 587-629 5-36 (173)
472 cd02679 MIT_spastin MIT: domai 51.0 29 0.00062 26.2 4.0 15 348-362 22-36 (79)
473 PRK12798 chemotaxis protein; R 50.6 3E+02 0.0066 28.4 23.5 198 191-427 112-320 (421)
474 COG5536 BET4 Protein prenyltra 50.4 2.4E+02 0.0053 27.2 17.1 184 49-233 32-235 (328)
475 cd03801 GT1_YqgM_like This fam 50.3 22 0.00048 35.8 4.7 193 489-684 1-226 (374)
476 PF10952 DUF2753: Protein of u 48.7 1.1E+02 0.0023 25.4 7.0 69 371-439 4-91 (140)
477 KOG4151 Myosin assembly protei 48.6 45 0.00097 36.8 6.5 95 307-401 60-160 (748)
478 PF13812 PPR_3: Pentatricopept 47.6 55 0.0012 19.2 4.4 23 372-394 5-27 (34)
479 cd02679 MIT_spastin MIT: domai 47.4 38 0.00081 25.6 4.1 14 171-184 22-35 (79)
480 PF02670 DXP_reductoisom: 1-de 47.3 32 0.0007 28.9 4.2 80 501-585 9-109 (129)
481 PF04348 LppC: LppC putative l 46.9 6.4 0.00014 42.5 0.0 98 190-291 23-123 (536)
482 PHA02537 M terminase endonucle 46.6 35 0.00077 31.9 4.7 93 58-150 93-212 (230)
483 PF04212 MIT: MIT (microtubule 46.1 44 0.00095 24.3 4.4 27 50-76 7-33 (69)
484 cd02681 MIT_calpain7_1 MIT: do 46.0 41 0.0009 25.1 4.1 28 49-76 7-34 (76)
485 COG4091 Predicted homoserine d 45.2 62 0.0013 32.1 6.2 94 484-585 14-121 (438)
486 KOG2758 Translation initiation 45.1 3.2E+02 0.0069 27.0 19.3 217 53-269 100-332 (432)
487 cd02683 MIT_1 MIT: domain cont 44.4 41 0.0009 25.2 4.0 29 48-76 6-34 (77)
488 KOG4521 Nuclear pore complex, 42.9 6.4E+02 0.014 29.9 14.6 141 302-446 922-1111(1480)
489 COG5536 BET4 Protein prenyltra 42.9 3.2E+02 0.007 26.4 16.7 166 175-341 50-234 (328)
490 KOG2066 Vacuolar assembly/sort 42.4 5.4E+02 0.012 28.9 20.9 276 92-425 366-670 (846)
491 KOG4563 Cell cycle-regulated h 41.0 57 0.0012 32.5 5.3 59 44-102 37-103 (400)
492 cd02684 MIT_2 MIT: domain cont 40.9 48 0.001 24.7 3.8 35 314-363 1-35 (75)
493 KOG2561 Adaptor protein NUB1, 40.7 3.4E+02 0.0074 28.1 10.5 26 371-396 270-295 (568)
494 PF13226 DUF4034: Domain of un 40.6 3.6E+02 0.0077 26.3 12.5 135 89-242 7-150 (277)
495 KOG2561 Adaptor protein NUB1, 40.3 2.6E+02 0.0056 28.9 9.7 115 84-219 165-295 (568)
496 TIGR00824 EIIA-man PTS system, 40.0 37 0.0008 28.0 3.5 61 515-594 27-88 (116)
497 cd00280 TRFH Telomeric Repeat 39.9 2.8E+02 0.0062 25.0 8.9 75 64-139 85-167 (200)
498 PF07219 HemY_N: HemY protein 39.9 1.3E+02 0.0029 24.3 6.7 48 84-131 61-108 (108)
499 PF09477 Type_III_YscG: Bacter 39.8 2E+02 0.0044 23.2 11.9 87 51-142 9-95 (116)
500 PF03745 DUF309: Domain of unk 39.3 1.4E+02 0.003 21.3 7.9 58 121-179 4-61 (62)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-122 Score=896.62 Aligned_cols=657 Identities=37% Similarity=0.537 Sum_probs=607.8
Q ss_pred CCCCCCCccCCCccCCCCCCCCCCCCCcccccccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHH
Q 005626 10 NGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG 89 (687)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (687)
..++...+...+|..+...+.+...+..+ ....+.-.+.+-.+|+++..+|++++|+.+|+.++++.|++.++|.++|
T Consensus 80 t~~~~llll~ai~~q~~r~d~s~a~~~~a--~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla 157 (966)
T KOG4626|consen 80 TNTERLLLLSAIFFQGSRLDKSSAGSLLA--IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLA 157 (966)
T ss_pred Ccccceeeehhhhhcccchhhhhhhhhhh--hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHH
Confidence 34455556666666665555444433322 2333456777888999999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 005626 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (687)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~ 169 (687)
.++...|+.+.|.++|.++++++|....+...+|..+...|+..+|..+|.++++..|...- +|.++|..+..
T Consensus 158 ~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-------awsnLg~~f~~ 230 (966)
T KOG4626|consen 158 AALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-------AWSNLGCVFNA 230 (966)
T ss_pred HHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee-------eehhcchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999997544 48889999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (687)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (687)
+|+...|+..|+++++++|+..++|++||.+|.+.+.+++|+.+|.+++...|+++.++.++|.+|..+|..+-|+..|+
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005626 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 250 ~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (687)
+++++.|+.++++.+++.++..+ |+..+|..+|.+++.+.|.++++.++||.++.++|++++|..+|.++++.
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999999999999888888875 69999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005626 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (687)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (687)
.|..+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+..|.+++.++|..++++.+||
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCh-----HHHHHHHHHHHH--HHhhh-----------
Q 005626 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWGK--RFMRL----------- 471 (687)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~----------- 471 (687)
.+|...|+..+|+..|+.+|+++||.+++..|++.++.+++.|.+ .++.+.+++|.. ++...
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~ 543 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLS 543 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccc
Confidence 999999999999999999999999999999999999999999987 788888888884 33221
Q ss_pred -----------------------ccCcCCCCCCCCCCCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCC
Q 005626 472 -----------------------YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK 528 (687)
Q Consensus 472 -----------------------~~~~~~~~~~~~~~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~ 528 (687)
.+|+..|.+-+.+++||||||||+||.+||++|||+.++.+|||++||||||+.++.
T Consensus 544 ~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~ 623 (966)
T KOG4626|consen 544 HILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVN 623 (966)
T ss_pred hHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecC
Confidence 134556667777889999999999999999999999999999999999999998775
Q ss_pred CChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCcchhhccCCCceEEecccCCCCCCCCCc
Q 005626 529 ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTI 608 (687)
Q Consensus 529 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p~t~g~~~~ 608 (687)
++.. ||..+.++++||+|+++++...+|..|++|+|||||+|+|||.|+|.++||+|||||||+|+|||||||+++|
T Consensus 624 d~t~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~m 700 (966)
T KOG4626|consen 624 DGTN---FRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFM 700 (966)
T ss_pred CCch---HHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCcee
Confidence 4432 7888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCcccccccccceeecCCCccccCCCC--------CCCCCCCCCCCCCCCeEEEecCCCCCCCHHHHHHHh
Q 005626 609 DYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALTNGFITFGSFNNLAKVLVRSYLCLD 680 (687)
Q Consensus 609 Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~--------~~~~~~~~~~~~~~~~~f~~fn~~~k~~~~~~~~w~ 680 (687)
||+|+|.++.|++....|||||++|||||+|+++.. ...|+++.++|++|+|||||||+++||+|.|+.+|.
T Consensus 701 DYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~ 780 (966)
T KOG4626|consen 701 DYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWA 780 (966)
T ss_pred eEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHH
Confidence 999999999999999999999999999999999866 455678889999999999999999999999999999
Q ss_pred hhhhc
Q 005626 681 KCSTC 685 (687)
Q Consensus 681 ~~~~~ 685 (687)
+||..
T Consensus 781 ~ILk~ 785 (966)
T KOG4626|consen 781 NILKR 785 (966)
T ss_pred HHHHh
Confidence 99864
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-70 Score=532.49 Aligned_cols=388 Identities=26% Similarity=0.403 Sum_probs=306.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (687)
+....++..+...+..++.++..+.. +...+...+....+.......+..+|++..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444566666666677777766433 4677777888888888899999999999999999998888877766666555
Q ss_pred HH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 358 QM-ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 358 ~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
.. +....|++......+ +.....+|+..++...++++..+.|.++.+...+.....+...+. .
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~ 194 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------E 194 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------h
Confidence 54 888888887765555 888888889999999999999999988766666555533333332 2
Q ss_pred cCCCChhhhhhHHH-----HhhhccCCChHHHHHHHHHHHHHHhhhc---cCcCCCC-CCCCCCCCeEEEEecCCcccch
Q 005626 431 IDPDSRNAGQNRLL-----AMNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHS 501 (687)
Q Consensus 431 ~~p~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~lriGy~S~df~~h~ 501 (687)
..|.+........+ .+.++.+ ++..-.....+....+.... .+++.|. +...+++|+||||+|+|+|.|+
T Consensus 195 ~~~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Ha 273 (620)
T COG3914 195 EAPTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHA 273 (620)
T ss_pred ccchHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccch
Confidence 33333332222221 1222222 23333444445555554222 2333443 2334678999999999999999
Q ss_pred HHHHHHhhccccCCCceEEEEEecC-CCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCC
Q 005626 502 VSYFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANN 580 (687)
Q Consensus 502 v~~~~~~~~~~~d~~~fev~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~ 580 (687)
|++++.++|++|||++||||+|+.+ +..|+.+.|++..+ ++|.++.+|+|.++|++|+.|+|||||||+|||..+
T Consensus 274 vg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~ 349 (620)
T COG3914 274 VGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDT 349 (620)
T ss_pred HHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceecc
Confidence 9999999999999999999999998 67899999999987 689999999999999999999999999999999999
Q ss_pred cchhhccCCCceEEecccCCCCCCCCCccEEEecCCCCCcccccccccceeecCCCccccCCCCCCCCCCCC-----CCC
Q 005626 581 KLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-----PAL 655 (687)
Q Consensus 581 r~~~~a~r~APvq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~-----~~~ 655 (687)
|++|||+|||||||||+|||+|||+|.|||||+|++|+||+.+.+|||||||||+ ||+|.+...++.|+ +++
T Consensus 350 r~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lgl 426 (620)
T COG3914 350 RCQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGL 426 (620)
T ss_pred chhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCC
Confidence 9999999999999999999999999999999999999999999999999999994 67888776666665 578
Q ss_pred CCCCeEEEecCCCCCCCHHHHHHHhhhhhc
Q 005626 656 TNGFITFGSFNNLAKVLVRSYLCLDKCSTC 685 (687)
Q Consensus 656 ~~~~~~f~~fn~~~k~~~~~~~~w~~~~~~ 685 (687)
|++.||||||||..||||++|+.|++||.+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~ 456 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSA 456 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999975
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=3.2e-60 Score=472.43 Aligned_cols=151 Identities=44% Similarity=0.801 Sum_probs=125.5
Q ss_pred eEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCC-ChHhHHHHHHhhhcCCceEeCCCCC-HHHHHHHHHhC
Q 005626 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (687)
Q Consensus 488 lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 565 (687)
|||||||+||++|||++|+.+++++|||++|||+||+.++.+ +..+++++..+ ++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999988754 45777777655 7999999987 68999999999
Q ss_pred CCcEEEecCCCCCCCcchhhccCCCceEEecccCCCCCCCCCccEEEecCCCCCcccccccccceeecCCCccccCC
Q 005626 566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTP 642 (687)
Q Consensus 566 ~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~ 642 (687)
+|||||||+|||.++|++|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||+||+|+++
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~ 153 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDH 153 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----H
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-47 Score=371.34 Aligned_cols=418 Identities=28% Similarity=0.418 Sum_probs=377.1
Q ss_pred CCCCCCCCCcccccccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------------------------
Q 005626 28 SLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-------------------------- 81 (687)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------------- 81 (687)
+.+++++++....-..........+++|...++.|+|.+|.+.+..+...+|.+
T Consensus 28 ~~~s~~s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~ 107 (966)
T KOG4626|consen 28 SVSSSGSSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLL 107 (966)
T ss_pred CcccccchHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhh
Confidence 333333333333333344555668999999999999999999998887766644
Q ss_pred --------HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 82 --------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (687)
Q Consensus 82 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (687)
.+++.++|.++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+
T Consensus 108 a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca- 186 (966)
T KOG4626|consen 108 AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA- 186 (966)
T ss_pred hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-
Confidence 46777899999999999999999999999999999999999999999999999999999999999986554
Q ss_pred HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005626 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (687)
Q Consensus 154 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (687)
...+|..+...|+..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|...++|.++|.
T Consensus 187 ------~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGn 260 (966)
T KOG4626|consen 187 ------RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGN 260 (966)
T ss_pred ------hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHH
Confidence 67788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 005626 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313 (687)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 313 (687)
+|...+.+++|+.+|.+++.+.|++.. ++.+++-+|..+|..+-|+..|+++++..|..++++.++|..+...
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 999999999999999999999998754 4556777777799999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (687)
Q Consensus 314 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (687)
|+..+|+.+|.+++.+.|..+++.++||.++.++|.+++|...|+++++..|+.+.++.+||.+|.++|++++|+.+|+.
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHH
Q 005626 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (687)
Q Consensus 394 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 461 (687)
++.+.|..++++.++|..|..+|+...|+++|.+|+.++|...+++.|+ +..|-..|+..+++..+
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985 45556666665555443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1e-35 Score=325.98 Aligned_cols=382 Identities=16% Similarity=0.175 Sum_probs=332.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~------------------------------~~~la~~------------------ 159 (687)
.+|++++|+..|..+....+..... +..++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766554332111 0011110
Q ss_pred --------HHHhHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005626 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (687)
Q Consensus 160 --------~~~lg~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (687)
+..++... ...+++++|+..|+++++. .|....++..+|.++..+|++++|+..++++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01111111 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005626 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (687)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 305 (687)
..+..+|.++...|++++|+..|+++++.+|++...+..++.++. ..|++++|+..|+++++.+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-------IKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 999999999999999999999999999999999876666555554 4679999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-
Q 005626 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVVY- 378 (687)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~- 378 (687)
+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|..... +...+.++
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 22333333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
...|++++|+..++++++++|++..++..+|.++..+|++++|+.+|++++++.+....
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44799999999999999999999999999999999999999999999999999887554
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.8e-34 Score=331.18 Aligned_cols=405 Identities=20% Similarity=0.189 Sum_probs=328.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
....+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 45567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
...|++++|+..+++++..+|.+... +..++..+...|++++|+..++++++..|.+...+..+|.++...|+
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888776654 45567777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-----------------
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL----------------- 269 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----------------- 269 (687)
+++|+..|+++++..|.++..+..+|.++...|++++|+..|+++++..|++...+..++.++
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888776665554443
Q ss_pred ----------HHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 005626 270 ----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339 (687)
Q Consensus 270 ----------~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 339 (687)
..+|.++...|++++|+..|++++...|+. ..+..++.++...|++++|+..++++++..|++..++..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 334555667788888888888888887776 667778888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005626 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (687)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (687)
+|.++...|++++|+..|+++++..|+++.++.+++.++...|+ .+|+.+++++++..|+++..+..+|.++...|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 88888888888888888888888888888888888888888888 77888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 005626 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (687)
Q Consensus 420 ~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (687)
+|+.+|+++++.+|+++.+..++ +..+...|..+++.+..+
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 88888888888888877666654 444555666666554443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.2e-33 Score=323.21 Aligned_cols=412 Identities=19% Similarity=0.194 Sum_probs=319.3
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHH-------
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVE------- 83 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~------- 83 (687)
+.+....+.+|..++..|++++|+..+++++...+ +...
T Consensus 178 P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 45667888999999999999999999999865432 1110
Q ss_pred -------------HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 84 -------------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 84 -------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (687)
....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 0013478888999999999999999999999999999999999999999999999999999999875
Q ss_pred HHH--HHH-----HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 151 PAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (687)
Q Consensus 151 ~~~--~~l-----a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (687)
... ..+ ......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 421 111 1123456888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 224 YAEAYCNMGVIY------------------------------------------KNRGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 224 ~~~~~~~la~~~------------------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
+..++..++.++ ...|++++|+..|+++++.+|++...
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 887766655544 45677777888888888877777655
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA--------------- 326 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 326 (687)
+..++.++ ...|++++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 498 ~~~LA~~~-------~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 498 TYRLAQDL-------RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred HHHHHHHH-------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 54444443 33567888888888877777777777776666666666666666555432
Q ss_pred -------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 327 -------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (687)
Q Consensus 327 -------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 381 (687)
++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 1235666777778888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh----hhhHHHHhhhccCCChHHH
Q 005626 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----GQNRLLAMNYINEGHDDKL 457 (687)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a----~~~~~~~~~~~~~~~~~~~ 457 (687)
|++++|++.++++++..|++..++..+|.++...|++++|++.|++++...|+++.. ...+..+..+...|+.+++
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888888888888877665432 2222234455566776666
Q ss_pred HHHHHH
Q 005626 458 FEAHRD 463 (687)
Q Consensus 458 ~~~~~~ 463 (687)
...++.
T Consensus 731 ~~~y~~ 736 (1157)
T PRK11447 731 LETYKD 736 (1157)
T ss_pred HHHHHH
Confidence 655543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.7e-33 Score=326.27 Aligned_cols=367 Identities=15% Similarity=0.112 Sum_probs=328.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHH--------------H
Q 005626 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (687)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (687)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (687)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2355788999999999999999999999998765 777888899999999999999999999999877665554
Q ss_pred H------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 199 V------------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (687)
Q Consensus 199 ~------------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (687)
. ++...|++++|++.|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 4456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------------------------------------Hhchhhhhc
Q 005626 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-------------------------------------~l~~~~~~~ 279 (687)
..|++++|+..++++++..|++...+..++..+. .++..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998877665543322 234445567
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
|++++|+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777665 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
+++..|+++.++..+|.++...|++++|++.|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876543 4667789999999999999999999986
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-32 Score=317.02 Aligned_cols=387 Identities=21% Similarity=0.211 Sum_probs=322.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (687)
....++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34445556666666666666666666666777777777788888888888888888888887887777777888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 005626 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (687)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (687)
|++++|+..|++++...|.+... +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 88888888888888777776554 55666777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHH
Q 005626 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (687)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~ 289 (687)
|+..++++++..|.+...+..+|.++...|++++|+..|+++++..|.+...+..++. ++...|++++|+..+
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD-------AYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-------HHHHcCCHHHHHHHH
Confidence 8888888888888888888899999999999999999999998888887765554444 444467999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (687)
Q Consensus 290 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (687)
+++++.+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++|++.|++++...|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~ 449 (687)
.+..++.++...|++++|+..++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.+..++. ..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA--WLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999887776643 3344
Q ss_pred cCCC
Q 005626 450 NEGH 453 (687)
Q Consensus 450 ~~~~ 453 (687)
..++
T Consensus 816 ~~~~ 819 (899)
T TIGR02917 816 ELKD 819 (899)
T ss_pred hcCc
Confidence 4444
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.2e-32 Score=298.08 Aligned_cols=362 Identities=10% Similarity=-0.016 Sum_probs=325.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
....+...+..+.+.|++++|+.+++.++...|++..+++.+|.+....|++++|+..|+++++.+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34557778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
...|++++|+..|+++++++|++... +..++.++...|++++|+..+++++...|+++.++..++ .+...|+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~ 192 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSR 192 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCC
Confidence 99999999999999999999998776 667788888899999999999999999999998887765 4788999
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH-
Q 005626 207 YDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ- 284 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~- 284 (687)
+++|+..++++++..| ........++.++...|++++|+..++++++..|++...+..++.++.. .|++++
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~eA 265 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSREA 265 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchhh
Confidence 9999999999999876 3344556678899999999999999999999999988777666665555 567775
Q ss_pred ---HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 285 ---GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 285 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
+.+|++...+..+|.++...|++++|+..|+++++..|++. ...+++|...|.++++..+..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCc
Confidence 99999988888889999999999999999999999999864 344556777777777766554
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.3e-31 Score=293.47 Aligned_cols=364 Identities=20% Similarity=0.185 Sum_probs=308.3
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 161 (687)
...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 346778999999999999999999999999996 7789999999999999999999999999999998776 77
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY----------------- 194 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~----------------- 194 (687)
.+|.++...|++++|+..|..+...++. +...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 7888888889999998877655433221 11111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (687)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (687)
..++..+ ...+++++|++.|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005626 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (687)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (687)
+++|+....+..++.++.. .|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLE-------LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 9999987766666555554 679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH------H
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------N 406 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~ 406 (687)
+...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++++.|+....+ .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753322 2
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 005626 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (687)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (687)
..+ .++...|++++|+..++++++++|++..++.. ++..+...|+.+++....+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 233 33445799999999999999999998776544 4566667777766655443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.5e-31 Score=291.43 Aligned_cols=366 Identities=12% Similarity=0.020 Sum_probs=326.9
Q ss_pred HhCCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (687)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (687)
+++.+++.---++...-+. ..++..-....+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 4445555544455444333 2334456677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (687)
Q Consensus 136 ~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (687)
+..+++++..+|++..+ +..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++
T Consensus 96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999877 67778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh
Q 005626 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 216 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (687)
+++...|++...+..++ .+...|++++|+..++++++..|...... ...++..+...|++++|+..++++++.
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998887765 48899999999999999999876432221 122344555678999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (687)
Q Consensus 296 ~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (687)
+|+++.++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 9999999999999999999999999999998888888999999999999999999999999987543
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-30 Score=249.96 Aligned_cols=380 Identities=17% Similarity=0.168 Sum_probs=318.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
+..+-.+|+.++++|+|++||++|.++++..|+.+..+.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--------------------------------------------
Q 005626 128 DEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTD-------------------------------------------- 162 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~-------------------------------------------- 162 (687)
.+|++++|+....-.--.. -++.......-+++..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999999876543221100 0000000000000000
Q ss_pred -----hH--HHHHHc---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 163 -----LG--TSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKAAL 219 (687)
Q Consensus 163 -----lg--~~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (687)
+. .-.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|.+.++++++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 00 001111 24555555555544321 112 66788888999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC
Q 005626 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (687)
Q Consensus 220 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 299 (687)
++|.....|..++.+|...++.++-...|.++.+++|++++.++..+.+++.+ +++++|+.-|++++.++|++
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcChhh
Confidence 99999999999999999999999999999999999999999888877777765 59999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHH
Q 005626 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNN 373 (687)
Q Consensus 300 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~ 373 (687)
.-.+..++.+.+++++++++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|. ++..+.+
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 6666666
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 374 LGVVYTV-QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 374 la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.|.+..+ .+++.+|+.+++++++++|....++..||.+..++|+.++|+++|+++..+.-.
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5555443 689999999999999999999999999999999999999999999999887544
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.4e-29 Score=282.14 Aligned_cols=409 Identities=14% Similarity=0.091 Sum_probs=338.8
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
.+....-....+....|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45556666778889999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (687)
+...|++++|+..++++++..|++.. + ..+|.++...|++++|+..++++++..|++..++..++.++...+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~-------~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-L-------LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-H-------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999866 3 445677778899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Q 005626 206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD- 271 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 271 (687)
..++|+..++++.. .|... .....+..+.. ..+++ ++|++.++++++..|.++........+...
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998775 44421 11222222222 22345 789999999997765554433333333332
Q ss_pred hchhhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q 005626 272 LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD 346 (687)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 346 (687)
++. +...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+ ......++.++..
T Consensus 244 l~~-Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGA-LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHH-HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 332 2456899999999999998865432 344557999999999999999999999988765 4567788888999
Q ss_pred cCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 347 RDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
.|++++|+..++++.+..|. ...++..++.++...|++++|++.+++++...|++..++..+|.+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999998763 235778899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHH
Q 005626 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (687)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (687)
+...|++++|++.++++++++|++..+.... ++.++..++.+++....++...
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998876654 4456666777776666655544
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.2e-29 Score=282.68 Aligned_cols=379 Identities=15% Similarity=0.094 Sum_probs=320.3
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.+.....+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++..|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la 198 (687)
.++...|++++|+..++++++..|++..+ +..++.++...+..++|+..++++.. .|+.. .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 45567777778999999999987775 54421 1222222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHH-------HHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-H
Q 005626 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAE-------AYCN-MGVIYKNRGDLESAIACYERCLAVSPNFEI-A 261 (687)
Q Consensus 199 ~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 261 (687)
.+.. ..+++ ++|++.++++++..|.++. +... ++ .+...|++++|+..|+++++..+..+. .
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a 274 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWA 274 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHH
Confidence 2222 22345 7899999999976443322 2222 33 346779999999999999988644322 1
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----- 332 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 332 (687)
... ++.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 275 ~~~-------la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~ 347 (765)
T PRK10049 275 QRW-------VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY 347 (765)
T ss_pred HHH-------HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec
Confidence 111 3556666889999999999999888765 456777888899999999999999999998763
Q ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 333 ----------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 333 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
...++..++.++...|++++|++.+++++...|.++.++..+|.++...|++++|++.++++++++|++.
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 2457789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
.+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999998553
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=6.1e-28 Score=268.24 Aligned_cols=159 Identities=14% Similarity=0.024 Sum_probs=139.2
Q ss_pred cccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 005626 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (687)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (687)
+....+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+.
T Consensus 37 ~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~ 116 (987)
T PRK09782 37 SDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLER 116 (987)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 34455778889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSL 167 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~---------------------------------~~~lg~~~ 167 (687)
.++.+ +++++|+..|+++++.+|++.++...++.. ...+..+|
T Consensus 117 ~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 117 SLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred HHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Confidence 88776 999999999999999999999988777775 12236788
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (687)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (687)
...+++++|+..+.++++..|.+......++.+|..
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 889999999999999998888776666555555554
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-28 Score=255.62 Aligned_cols=395 Identities=19% Similarity=0.252 Sum_probs=326.8
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
..++.++.+|+.+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 456779999999999999999999999999999988 7889999999999999999999999999999999999999999
Q ss_pred HHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------------------------------HHhHHHHHH
Q 005626 125 LYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIVL-------------------------------TDLGTSLKL 169 (687)
Q Consensus 125 ~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~la~~~-------------------------------~~lg~~~~~ 169 (687)
+|...+ ..+.|..+..++++..|.+.+++..++.++ .++|..++.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 998876 678899999999999999988877776643 446667777
Q ss_pred cCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 170 AGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 170 ~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
.|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 77888888877777765 111 12346777888888888888888888888888888888877777777777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHh-----
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----- 312 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----- 312 (687)
...+|...+..++..+..++.++..++ ..+.....+..|.+-|+..++... .++-+...||+++++
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G-------~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLG-------NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHH-------HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 777888888888877777776655444 334445566667666665554322 355667777777653
Q ss_pred -------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005626 313 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (687)
Q Consensus 313 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 385 (687)
.+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|+..|.+..+-..++..+|.|+|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 005626 386 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (687)
Q Consensus 386 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~ 447 (687)
.|++.|+.+++.. .++.+++..||+++.+.|++.+|.+...+++.+.|.++....|+.+.+.
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 9999999999874 3568999999999999999999999999999999999999888766543
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.5e-28 Score=250.25 Aligned_cols=388 Identities=21% Similarity=0.246 Sum_probs=344.2
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
++.++-.++.+|.+.+.+|+|..|+.+|++++..+|.. ++....+|.|+..+|+.+.|+..|+++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 44567788999999999999999999999999999874 57888999999999999999999999999999999999999
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHH
Q 005626 123 GILYKDEG---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPAYYN 196 (687)
Q Consensus 123 a~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 196 (687)
|.+-.... .+..+...+.++...++.++.+ +..++..++..|++..+..+...++..... .++.++.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~-------l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~ 312 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVA-------LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQ 312 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHH-------HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 98877655 4678999999999999999887 777888888999999999999999887533 4567999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchh
Q 005626 197 LGVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (687)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~ 275 (687)
+|.+|..+|++++|..+|.++++.++++ .-.++.+|+++...|+++.|+.+|+++++..|++......++..|...+
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-- 390 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-- 390 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh--
Confidence 9999999999999999999999999988 7788999999999999999999999999999999998888888777654
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCH
Q 005626 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~ 350 (687)
......++|..++.++++..|.+.++|..++.++....-+.. +.+|.+++.. .+--++.++++|..++..|++
T Consensus 391 -~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 -KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred -hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 334567899999999999999999999999999887666555 9999999854 345589999999999999999
Q ss_pred HHHHHHHHHHHhc-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005626 351 DKAVECYQMALSI-----KPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (687)
Q Consensus 351 ~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (687)
++|...|.+|+.. +++. ....+++|.++...++++.|.+.|..+++.+|...+++..+|......++..+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 9999999999877 2222 23589999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHhcCCCChhhhhhH
Q 005626 421 AIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 421 A~~~~~~al~~~p~~~~a~~~~ 442 (687)
|...++.++..+..+++++.-+
T Consensus 549 a~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHH
Confidence 9999999999999999987643
No 19
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-27 Score=231.93 Aligned_cols=390 Identities=21% Similarity=0.230 Sum_probs=333.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
...-++++..+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH---------HHH-cCC-------hHHHHHHHHHHHhh-----
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKI----- 186 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~---------~~~-~g~-------~~~A~~~~~~al~~----- 186 (687)
+|+|++|+..|.+.++.+|++......++.+....... +.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988877766655211000 000 000 00000000011110
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 005626 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (687)
Q Consensus 187 ------------------------------------~p~---------------------~~~~~~~la~~~~~~g~~~~ 209 (687)
.|. .......+|...+...+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHH
Q 005626 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (687)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~ 289 (687)
|++.|.++++++ .+...+.+.+.+|...|.+.+.+....++++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8888999999999999999999999999998887777777788999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (687)
Q Consensus 290 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (687)
++++..... ..+.......++++...+...-++|.-..--...|..++..|+|.+|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876544 556666777888888888888888988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~ 447 (687)
.+.+.|.||..+|.+..|+...+++++++|+....|..-|.++..+.+|++|.+.|+++++.+|++..+...+.-++.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766544443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4e-26 Score=253.87 Aligned_cols=359 Identities=13% Similarity=0.052 Sum_probs=237.3
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCC-----
Q 005626 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR----- 131 (687)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~----- 131 (687)
..+.+.+|........+..|.+.+.+..++......|++++|...|+++....++. ......++.+|...+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 34566666666666666667777777777777777777777777777776642221 1122255555544433
Q ss_pred --------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 132 --------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 132 --------------------~~~---A~~~~~~al~~~~~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
..+ +...+.+++...|. +..+ +..+|.++.. ++..+|+..+.+++..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 211 22233333333344 3333 5566666655 6777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005626 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 266 (687)
.|++. ....+|.++...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........
T Consensus 506 ~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~-- 581 (987)
T PRK09782 506 QPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW-- 581 (987)
T ss_pred CCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH--
Confidence 77643 35555666667777777777777766554443 445667777777777777777777777777665433222
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
++......|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..|+++++++|+++.++.++|.++..
T Consensus 582 -----La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 582 -----LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred -----HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 222222346777777777777777775 77777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (687)
.|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|++++++.|+++.+....|.+.....+++.|.+.++
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCCCh
Q 005626 427 QCLKIDPDSR 436 (687)
Q Consensus 427 ~al~~~p~~~ 436 (687)
++..++|+..
T Consensus 736 r~~~~~~~~~ 745 (987)
T PRK09782 736 RRWTFSFDSS 745 (987)
T ss_pred HHhhcCccch
Confidence 7777777655
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.6e-27 Score=234.57 Aligned_cols=307 Identities=20% Similarity=0.280 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 005626 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (687)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (687)
..+..+|..|.. +-+..+|+..|++.-...++. +.++..+|..|+.+++|++|.++|+.+-+..|-..+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-------~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-------GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655544 556789999999955555554 34588899999999999999999999999999887777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhch
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~ 274 (687)
-....+++.+++--+--.+.+..++.+|+.++.|..+|.+|..+++++.|+++|+++++++|++.. +|..+|.
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-------ayTLlGh 463 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-------AYTLLGH 463 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-------hhhhcCC
Confidence 777778887777666556667788899999999999999999999999999999999999998754 4566677
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (687)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 354 (687)
-+.....++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.+|++|+.++|.++-..+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Chh
Q 005626 435 SRN 437 (687)
Q Consensus 435 ~~~ 437 (687)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 654
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.9e-26 Score=216.74 Aligned_cols=359 Identities=19% Similarity=0.192 Sum_probs=285.3
Q ss_pred HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005626 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (687)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~l 163 (687)
.+-..|.-++..|+|++|+++|.+++++.|+.+..|.+++.||...|++++.++...++++++|+...+ +++.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~RR 189 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLRR 189 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHHH
Confidence 455678889999999999999999999999999999999999999999999999999999999998777 5555
Q ss_pred HHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCC---------------------
Q 005626 164 GTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHY--------------------- 190 (687)
Q Consensus 164 g~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~--------------------- 190 (687)
+..+...|++.+|+.-. ++.++. .|..
T Consensus 190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 55555566666665432 222211 1111
Q ss_pred ------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 191 ------APAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIACY 248 (687)
Q Consensus 191 ------~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~ 248 (687)
.++...-+.-+...+ .|.+|...+.+..... ..+ +.++...|..++-.|++-.|...|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 111111111111222 4666666665553321 112 567888889999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005626 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (687)
Q Consensus 249 ~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 328 (687)
+++++++|.+...+ ..++.+|....+.++-...|.++..++|+++++|+..|++++-++++++|+.-|++++.
T Consensus 350 ~~~I~l~~~~~~ly-------I~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 350 DAAIKLDPAFNSLY-------IKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred HHHHhcCcccchHH-------HHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887654 44555555578999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cH
Q 005626 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YA 402 (687)
Q Consensus 329 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 402 (687)
++|++...+..++.+.++++++++++..|+.+.+..|+.++.+...|.++..++++++|++.|++++++.|. ++
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHH
Q 005626 403 EAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 458 (687)
Q Consensus 403 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~ 458 (687)
..+.+.|.+.. -.+++..|++.+++|++++|....+...+. ..-+..+..++++
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla--q~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA--QFELQRGKIDEAI 557 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH--HHHHHHhhHHHHH
Confidence 55555444332 358999999999999999999888876643 2233444444433
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-25 Score=217.48 Aligned_cols=389 Identities=21% Similarity=0.234 Sum_probs=326.0
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHH------HhcCCCC----
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (687)
.++...+.+|++++-.|+|..|..+...- ..+..+....+..+.|+....++++|+..+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 67888899999999999999998887764 555667788899999999999999999888733 1111211
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------
Q 005626 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------------------- 159 (687)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~--------------------- 159 (687)
....+..|.+|....+.++|...|.+++..++...++...+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 23457778889999999999999999998887765554333221
Q ss_pred -----------------------------------------HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 160 -----------------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 160 -----------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (687)
+...+..++..+++.+..+..+..++.+|-+...+-..-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 112344556667777778888888888887766665544
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
-++.+.|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...+.++..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------- 358 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------- 358 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------
Confidence 4778888877777777788888899999999999999999999999999999999999999888777766655
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
.+..++|+..|..|.++.|....-...+|.-|...++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 67999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 359 MALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 359 ~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+++..-+ .....+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9994321 123468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhH
Q 005626 432 DPDSRNAGQNR 442 (687)
Q Consensus 432 ~p~~~~a~~~~ 442 (687)
+|++..+..-+
T Consensus 519 ~p~n~~~~~lL 529 (611)
T KOG1173|consen 519 KPDNIFISELL 529 (611)
T ss_pred CCccHHHHHHH
Confidence 99997655443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=4.1e-24 Score=233.06 Aligned_cols=390 Identities=13% Similarity=0.012 Sum_probs=273.5
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
..++..+..+...+++|++++|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.....+..+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999965555888889999999999999999994444455555556889
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (687)
+...|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++...+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 999999999999999999999999776 4456777788899999999999999999985554 56677776678
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------------
Q 005626 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE------------------------------------ 249 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------------------------ 249 (687)
+..+|++.++++++.+|++.+.+..+..++...|-...|.+...
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 88789999999999999999988888877777665555444433
Q ss_pred ------------HHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Q 005626 250 ------------RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKF 316 (687)
Q Consensus 250 ------------~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 316 (687)
..+...+..+........+....-..+...+++.+++..|+.+.... +--..+....|..|...++.
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 33332222111111111111122222334556666666666665443 22334556666666677777
Q ss_pred HHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHH
Q 005626 317 DMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNNLG 375 (687)
Q Consensus 317 ~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la 375 (687)
++|+.+|++++.-.+ ........|...+...+++++|..++++..+..| +..++...++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 777777776665432 2233345566666666777777766666665322 2234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 005626 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (687)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~ 443 (687)
.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|.+.++.++.++|++..+.....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 66666677777777777776667777777777777777777777777777666666666666555443
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-24 Score=208.29 Aligned_cols=364 Identities=17% Similarity=0.161 Sum_probs=270.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYK 127 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 127 (687)
-++..|.++.+.|....|+..|..++...|-+..+|..++.+.-. ++........-| .+...-+.++.++.
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666666555322 122222222222 22333344566666
Q ss_pred HcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 128 DEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
...+.++++.-++..... .|.+... -...|.+.....++++|+..|+...+.+|-..+-.-...++++-.++
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 666777777777777766 5554443 34455566667888888888888888888777666667777776666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHH
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~ 286 (687)
-.+-.-..+.+.+++.-.++....+|+.|...++.++|+.+|+++++++|+...+|..++.-+.. .++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-------mKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-------MKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-------hcccHHHH
Confidence 55555555666777777778888888888888888999999999999988877666555444444 56888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (687)
+.|++|++++|.+-.+|+.+|+.|.-++...=|+-+|+++.+..|.+...|..||.+|.+.++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999888899999999998888888999999999999999999999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-++.
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 888888999999999999999998888887 34555677777888888889999888888887766444
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=1.2e-24 Score=199.90 Aligned_cols=327 Identities=19% Similarity=0.227 Sum_probs=253.9
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.+.+++..+++|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHH-----HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (687)
.+++++|++++|+..|++++..+|++... ...++. .+......+...|+...|+......+++.|-++..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999965433 332222 2334455667789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH---HHHH--
Q 005626 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA---IALT-- 270 (687)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~---~~~~-- 270 (687)
..+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+..+- .+-.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999764332111 1111
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
.-.......+++.++++..++.++.+|..+. ....+..++...+++.+|+..+.+++..+|++..++...+..|+.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1111222345555555555555555555332 233344555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHH
Q 005626 347 RDNLDKAVECYQMALSIKPNFSQS 370 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~ 370 (687)
...|+.|+..|++|.+.++++..+
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHH
Confidence 555555555555555555555443
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.2e-26 Score=228.34 Aligned_cols=306 Identities=20% Similarity=0.214 Sum_probs=261.3
Q ss_pred HHHhHHHHHHH--hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 84 AHIGKGICLQM--QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (687)
Q Consensus 84 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 161 (687)
.+..+|..+.. +-+..+|+..|++.-...++...++..+|..|+++++|++|.++|+.+-+..|-..+....+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 34445555443 4466789999998777778888888899999999999999999999998888876655444444444
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
.+ .+--+--.+.+..+..+|+.++.|..+|+||.-+++++.|+++|+++++++|....+|..+|.-+....++
T Consensus 399 HL-------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 399 HL-------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HH-------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence 33 23223333445667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 321 (687)
+.|..+|++++..+|.+..+|+. +|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYG-------lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYG-------LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHh-------hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 99999999999999998776655 45555567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005626 322 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (687)
Q Consensus 322 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (687)
+|++|+.++|.++-..+..|.++..++++++|+..+++.-++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HH
Q 005626 402 AE 403 (687)
Q Consensus 402 ~~ 403 (687)
..
T Consensus 625 ~~ 626 (638)
T KOG1126|consen 625 AQ 626 (638)
T ss_pred ch
Confidence 44
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=3.1e-24 Score=221.33 Aligned_cols=377 Identities=15% Similarity=0.128 Sum_probs=308.1
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
.+.+.++..|+.++..|++++|..++.++++++|.+..+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVV 200 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 200 (687)
..++|++++|.-+|.++++.+|.+... ....+.++.+.|+...|...|.+++...|.. .......+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999765 6667777888899999999999999999832 2233455778
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH-----------------
Q 005626 201 YSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFE----------------- 259 (687)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~----------------- 259 (687)
+...++-+.|++.++.++... ....+.+..++.++....+++.|.......... .+++.
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 888888899999999999843 334456778899999999999999887766551 11110
Q ss_pred ---HHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CH
Q 005626 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA 334 (687)
Q Consensus 260 ---~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 334 (687)
..-..+-.+...++.+..+..+..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....+. +.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 00111112344555555566666676666544333333 35688999999999999999999999999887654 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEAY 405 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~ 405 (687)
.+|+.+|.+|..+|.+++|+++|++++.+.|++.++...|+.++.++|+.++|.+.+++...-++.+ ..+.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999876333222 3466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCL 429 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al 429 (687)
.....++...|+.++-+..-...+
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 788889999999888655444443
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-23 Score=200.61 Aligned_cols=373 Identities=19% Similarity=0.185 Sum_probs=266.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChH-------------------HHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (687)
.....+.+|..++..+.++.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345677899999999999999988887644 222222222222222111 12222222
Q ss_pred HHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 005626 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (687)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------- 162 (687)
-++. ...++..++..|.++.+.|....|+..+..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234577889999999999999999999999999999988887665543221
Q ss_pred -hHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 163 -lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
++.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+.+.+.+|-..+-.-...+++.-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 222233333444444444444443 344444444444444444455555555554444444433333333333333333
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005626 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 320 (687)
-.+-.-..+.+..++.--++ ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 22222222223333222111 11234566777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
+.|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|+++.|+++..|..||.||.+.++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+..++..||.+|.++++.++|..+|++.++.
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999983
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.2e-24 Score=224.96 Aligned_cols=308 Identities=20% Similarity=0.170 Sum_probs=204.8
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 162 (687)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..... .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H------
Confidence 3445556666666666666666666666666666666666666666666666666666665532211110 1
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (687)
...+..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555666666666666666666666655655666666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005626 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (687)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 322 (687)
+|++.++++++..|..... ..+..+..++..+...+++++|+..++++++..|+...++..+|.++...|++++|++.
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666655543221 12233445555555666777777777777777777777788888888888888888888
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005626 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (687)
Q Consensus 323 ~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (687)
++++++.+|.+ ..++..++.++...|++++|+..++++++..|+.... ..++.++...|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 88888877765 4567778888888888888888888888888876444 778888888888888888888888888887
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 005626 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCLK 430 (687)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 430 (687)
......++..+.. .|+.++|+..+++.++
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 7555444443322 4577777776665553
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=6.7e-24 Score=221.30 Aligned_cols=303 Identities=16% Similarity=0.124 Sum_probs=236.7
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH 121 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 121 (687)
......+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ...+..
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3556677789999999999999999999999999999999999999999999999999999998854332 356788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN 196 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~ 196 (687)
+|.++...|++++|+..|+++++..|.+..+ +..++.++...|++++|++.++++++..|.+. ..+..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 8999999999999999999999887765443 77788888888999999999988888776642 24566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhh
Q 005626 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (687)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~ 276 (687)
+|.++...|++++|+..++++++..|+...++..+|.++...|++++|++.++++++..|.+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------- 248 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------- 248 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence 788888888888888888888888888888888888888888888888888888777655421
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
..++..++.++...|++++|+..++++++..|+... +..++.++.+.|++++|+..
T Consensus 249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 123455666777777777888877777777776543 37778888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 005626 357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIA 396 (687)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 396 (687)
++++++..|++......++..+.. .|+.++|+..+++.++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 888888888776555444433322 4467777766665543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=206.25 Aligned_cols=404 Identities=18% Similarity=0.211 Sum_probs=311.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC-----HHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHT 120 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 120 (687)
-..++.+|..|....-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+++|+-++..-|.- ..++.
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 45577889999889999999999988776 356777778889999999999999999999999988752 45778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh--------------
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------------- 186 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 186 (687)
++|..+.+.|+|+.|+..|+.+++..|+...+ +++..+++..|+-++-.+.|.+.+.+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 88999999999999999999999999986553 44556667778888888888887765
Q ss_pred CCCCH--------------------------------------------------------------HHHHHHHHHHHHc
Q 005626 187 DPHYA--------------------------------------------------------------PAYYNLGVVYSEL 204 (687)
Q Consensus 187 ~p~~~--------------------------------------------------------------~~~~~la~~~~~~ 204 (687)
+|++. +.-.+.+..+++.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 11110 0111223334444
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC
Q 005626 205 MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 281 (687)
|+++.|++.++-.-+.+... ..+-.++..+++.+ .++..|.++...++.++.-++ .++.+.|++.+..|+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-------~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-------AALTNKGNIAFANGD 505 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-------HHhhcCCceeeecCc
Confidence 44554444443332222211 12223333333332 234444444444444444332 234556777778899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
+++|.+.|++++..+..-.++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++++.++.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999999988888889999999999999999999999999888888889999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
.+-|+++.++..||.+|-+.|+-.+|.+++-......|-+.+...+||..|....-+++|+.+|+++--+.|+. ..+.
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kwq 663 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKWQ 663 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974 4556
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHH
Q 005626 442 RLLAMNYINEGHDDKLFEAHRDWGKRF 468 (687)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (687)
++.+-++-..|+..++++.+++..+.|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 667777788899988888887765555
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=2.2e-23 Score=191.57 Aligned_cols=315 Identities=18% Similarity=0.159 Sum_probs=235.9
Q ss_pred CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 456778899999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAY------------YNLGVVYSELMQYDTALGCYEKAALERP 222 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (687)
....|.++.++|.+++|..-|..+++.+|++ .+++ ......+...|+...|++...+.+++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 5667888889999999999999999999864 2222 2233445567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 005626 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (687)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 302 (687)
.++..+...+.+|...|+...|+.-++.+-++..++.+..+.++..++.+| +.+.++...++.++++|++...
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg-------d~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG-------DAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh-------hHHHHHHHHHHHHccCcchhhH
Confidence 999999999999999999999999999999999999888888777777754 8899999999999999987654
Q ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 303 MYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (687)
Q Consensus 303 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (687)
+-.. +.-....++|.++++..++.++.+|..+. ....+..|+...+++.+|++.+.+++.++|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 3211 22233444455555555555555544222 2223344444555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (687)
+..++...+.+|.....|+.|+..|+++.+.++++..+..
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 5555555555555555555555555555555555444433
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.8e-22 Score=218.80 Aligned_cols=374 Identities=13% Similarity=0.008 Sum_probs=305.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 005626 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (687)
..++.++...|+.++|+..+++++...|.....+..+|.++..+|++++|++.|+++++.+|+++.++..++..+...++
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 36778888889999999999999944455555566668899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (687)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (687)
.++|++.++++...+|++... ..++.++...++..+|++.++++++.+|++.+++..+..++...|-...|.
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999984432 223444444677777999999999999999999888888777776655554
Q ss_pred HHHH------------------------------------------------HHHHh---CCCC----HHHHHHHHHHHH
Q 005626 212 GCYE------------------------------------------------KAALE---RPMY----AEAYCNMGVIYK 236 (687)
Q Consensus 212 ~~~~------------------------------------------------~al~~---~p~~----~~~~~~la~~~~ 236 (687)
+..+ +.+.. .|.. ..+..-.-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 4433 22331 2221 123334445677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Q 005626 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY 310 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~ 310 (687)
..|++.++++.|+.+.......+. .+....+..|...++.++|+.+|++++...+ ........|...+
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPD------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCH------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 889999999999988754422121 1233455666668899999999999987653 2333457788899
Q ss_pred HhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (687)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 375 (687)
...+++++|..++++..+..| +..++...++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999998533 34677888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|.....++++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998553
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=197.63 Aligned_cols=383 Identities=17% Similarity=0.182 Sum_probs=325.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
-+..|++++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+.+.+..|+...+ +++..|
T Consensus 240 kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~ 318 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIIC 318 (840)
T ss_pred eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhh
Confidence 355788999999999999999999998775 24678889999999999999999999999999976544 567788
Q ss_pred HHHcCCHHHHHHHHHHHHhcC----------CC-CHHHHHHHHH------------------------------------
Q 005626 126 YKDEGRLVEAAESYHKALSAD----------PS-YKPAAECLAI------------------------------------ 158 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~----------~~-~~~~~~~la~------------------------------------ 158 (687)
++..|+-++-.+.|.+.+.+- |. ++.. ..+..
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 888999999999999988641 11 1000 00000
Q ss_pred -----------------------HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHH
Q 005626 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTALG 212 (687)
Q Consensus 159 -----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~ 212 (687)
+-.+.+..+.+.|+++.|++.+.-.-+.+... ..+-.+|..+++.+ .++.+|.+
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 01123456778899999999886555444332 33455666666653 47889999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 005626 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (687)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (687)
+...++.++.-++.++.+.|.+.+..|++++|.+.|++++..+..... +++++|..+...|+.++|+++|-+.
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-------alfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-------ALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-------HHHHhcccHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987765544 5566677777788999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372 (687)
Q Consensus 293 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 372 (687)
-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
.||..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|++|.+.|+..-+..|++.+....+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998776544
No 36
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=3.4e-22 Score=203.03 Aligned_cols=389 Identities=15% Similarity=0.135 Sum_probs=317.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCGI 124 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 124 (687)
+...+-.+...+...|++..+.+.|++++...-...+.|+.++.++...|.-..|+..+++.+... |.++..+...+.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 344455567777788999999999999998877888999999999999999999999999999988 777777666665
Q ss_pred H-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc-----------CChHHHHHHHHHHHhhCCCCHH
Q 005626 125 L-YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAP 192 (687)
Q Consensus 125 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~ 192 (687)
+ ....+..++++.+..+++..... ..-...+..+..+|.+|..+ ....++++.++++++.+|.++.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~--~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGG--QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 4 55689999999999999985422 22223344555556555332 2356899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT- 270 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~- 270 (687)
+.+.++.-|..+++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.++...+++.........+-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 9999999999999999999999999999 55679999999999999999999999999999988874322111111100
Q ss_pred -----------------------------------HhchhhhhcCCHHHHHHHHHHHHHh--------C-----C-----
Q 005626 271 -----------------------------------DLGTKVKLEGDINQGVAYYKKALYY--------N-----W----- 297 (687)
Q Consensus 271 -----------------------------------~l~~~~~~~~~~~~A~~~~~~al~~--------~-----p----- 297 (687)
..+.......+..+|+..++++... . |
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0111112223444444444443322 0 1
Q ss_pred ---CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 298 ---HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (687)
Q Consensus 298 ---~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (687)
.. ...|...+..+...++.++|..++.++-.+.|..+..|+..|.++...|+..+|.+.|..++.++|+++.
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 11 1357788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 370 SLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
+...+|.++.+.|+..-|.+ .+..+++++|.+.++|+.+|.++..+|+.++|.++|..++++.+.+|.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999888888 999999999999999999999999999999999999999999998874
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.8e-22 Score=195.83 Aligned_cols=403 Identities=17% Similarity=0.135 Sum_probs=311.8
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
.+.+....+-+-+..+.+|.-|+-+-+++..+. .++.-.+.+|++++..+++..|......- ++...+....+..+.+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 456666677778888999999999999998887 78888899999999999999998877765 6667788889999999
Q ss_pred HHHcCCHHHHHHHHHHH------HhcCCCC---------HH---HHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005626 126 YKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~a------l~~~~~~---------~~---~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (687)
+....++++|...+.+. +..++.+ .. -....+.++...|.+|....+.++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999988733 1112221 00 012234456667888888899999999998887765
Q ss_pred CCCHH---------------------------------------------------------------------HHHHHH
Q 005626 188 PHYAP---------------------------------------------------------------------AYYNLG 198 (687)
Q Consensus 188 p~~~~---------------------------------------------------------------------~~~~la 198 (687)
+...+ +....+
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 54433 333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
..++...++.+..+..+..++.+|-+...+-..--++...|+..+-...-.+..+..|+.+..|+..+..|. .
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl-------~ 324 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL-------M 324 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH-------H
Confidence 444445555555555555555555554444333335555555555555555555555555555555444444 4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
.+++.+|..++.++..++|....+|...|..+...|+.++|+.+|.+|-++.|........+|.-|...++++-|.++|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+|+.+.|.++-.+..+|.+.+..+.+.+|..+|++++..-+ .....+.+||.++.+++++++|+.+|+++|.+
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999995422 23456899999999999999999999999999
Q ss_pred CCCChhhhhhHHHHhhhccCCChHHHHH
Q 005626 432 DPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (687)
Q Consensus 432 ~p~~~~a~~~~~~~~~~~~~~~~~~~~~ 459 (687)
.|.+...+.... ..|.-.|+.+.+.+
T Consensus 485 ~~k~~~~~asig--~iy~llgnld~Aid 510 (611)
T KOG1173|consen 485 SPKDASTHASIG--YIYHLLGNLDKAID 510 (611)
T ss_pred CCCchhHHHHHH--HHHHHhcChHHHHH
Confidence 999999887754 44444455554443
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=2.5e-21 Score=192.25 Aligned_cols=372 Identities=14% Similarity=0.057 Sum_probs=226.7
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
..++.-|+.+...+.++-|+..|..+++..|.....|...+..-...|..++-..++++++...|.....|...+..+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (687)
.|+...|...+.++++.+|++.+. +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.+
T Consensus 597 agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE 668 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence 666666666666666666665554 222333344456666666666666654443 455555666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHH
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~ 288 (687)
+|+++++++++..|+....|..+|+++.++++.+.|...|...++..|.....|..+ +.+..+.|+...|...
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL-------akleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL-------AKLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH-------HHHHHHhcchhhHHHH
Confidence 666666666666666666666666666666666666666666666666655544333 2333334566666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (687)
Q Consensus 289 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (687)
++++.-.+|++...|.....+-.+.|+.+.|...+.++++..|.+...|..-..+.-.-++-..++. |++....++
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dp 817 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDP 817 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCc
Confidence 6666666666666666666666666666666666666666666666655554444444444333333 333345556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
.++...|..+....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.+.....|.+...+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666655443
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=1e-20 Score=188.03 Aligned_cols=381 Identities=13% Similarity=0.048 Sum_probs=298.2
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcC---------------------------
Q 005626 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (687)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (687)
+..-|+.|...++++-+.-|.+..+|..-+..-...|+.+.-.++..+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 34456666666666666666666666666666666666665555555544320
Q ss_pred ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHH
Q 005626 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (687)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~ 177 (687)
.+....|..-+..+...+-++-|...|..+++..|..... +...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 0112234444555555666666677777777777765554 334444444557777888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (687)
.++++++...|.....|...+..+...|+...|...+.++++.+|++.+.|+....+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877665
Q ss_pred cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 005626 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (687)
Q Consensus 258 ~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 337 (687)
. .+++.-......+++.++|+.+++++++..|.....|..+|+++.++++.+.|...|...++..|.++..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 23333344444567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------
Q 005626 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (687)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 401 (687)
..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.++|.....+|++..|.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999887764
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHH
Q 005626 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (687)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~ 457 (687)
+.++...|.++....++++|.++|.++++++|++.+++..+ ...++..|..++.
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed~ 870 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEEDQ 870 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHHH
Confidence 44667789999999999999999999999999999998764 2334455655443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=2.9e-21 Score=199.66 Aligned_cols=337 Identities=15% Similarity=0.132 Sum_probs=274.4
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 161 (687)
...++..|..++..|++++|...+.++++++|.++.+|+.+|.+|.++|+.+++....-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999876 66
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 236 (687)
.++.....+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999999999999999999999999999999999999999832 223445577788
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh--CCC--------------
Q 005626 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH-------------- 298 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-------------- 298 (687)
..++-+.|++.++.++....+ ..+.... ++.++.+...++.|.......... .++
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni-------~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNI-------LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHH-------HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999983322 1122222 333444456777777666554431 000
Q ss_pred ------------CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 299 ------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
+..+ ...++.+..+.++..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 44555555555556566555443333223 458899999999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 365 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++..+|+.++|.+.+++...-+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 54 467999999999999999999999999999999999999999999999999999999999887434
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-21 Score=182.78 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=319.4
Q ss_pred cccccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCC-----
Q 005626 39 VGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP----- 113 (687)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----- 113 (687)
..+.....+.+.....+.++...++-+.|+..+.++.... ..+.....++..+-.-++-.++.-.+...+...|
T Consensus 88 ~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~ 166 (564)
T KOG1174|consen 88 ESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV 166 (564)
T ss_pred cccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH
Confidence 3344455678889999999999999999998877654322 2345555566665555554454444444443322
Q ss_pred --------------------------CCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhH
Q 005626 114 --------------------------QNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (687)
Q Consensus 114 --------------------------~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg 164 (687)
..+..+ ..++.++....-+..+..++-.-....|++... +..+|
T Consensus 167 i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~la 239 (564)
T KOG1174|consen 167 IEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALG 239 (564)
T ss_pred HHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHh
Confidence 222222 233444444444555556666666677777665 78889
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (687)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (687)
.+++..|++.+|+..|+++..++|......-..|.++...|+++.-.......+........-|+--+..++..++++.|
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005626 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (687)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 324 (687)
+.+-+++++.+|++..++...+..+.. .++.++|+-.|+.+..+.|...+.|..+..+|...|++.+|....+
T Consensus 320 L~~~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 320 LNFVEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHHHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999998776666655555 5699999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 325 LAFHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 325 ~al~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
.+++..|.++..+..+| .++. .----++|.+.++++++++|....+-..++.++...|++++++..+++.+...|+ .
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~ 471 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-V 471 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-c
Confidence 99999999999999887 4443 3345689999999999999999999999999999999999999999999999887 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
..+..||.++...+.+++|.++|..|+.++|++..+...+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 6899999999999999999999999999999998776553
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.7e-22 Score=192.42 Aligned_cols=361 Identities=19% Similarity=0.170 Sum_probs=296.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (687)
+-+....+...|+|++|++--.+.++++|..+..|..+|..+.-+|+|++|+..|.+.|+.+|++...+..++.++....
T Consensus 39 ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~ 118 (539)
T KOG0548|consen 39 YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY 118 (539)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999998888887763220
Q ss_pred C------------------------HHHHHHHHHHHHhcCCCCHHH----------------------------------
Q 005626 131 R------------------------LVEAAESYHKALSADPSYKPA---------------------------------- 152 (687)
Q Consensus 131 ~------------------------~~~A~~~~~~al~~~~~~~~~---------------------------------- 152 (687)
. .+.+.....+.+..+|.+...
T Consensus 119 ~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~ 198 (539)
T KOG0548|consen 119 AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA 198 (539)
T ss_pred HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence 0 011111111112212211000
Q ss_pred ---------------------HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 153 ---------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (687)
Q Consensus 153 ---------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (687)
....+.-...+|...+...++..|++.|..+++++ .+...+.+.+.+|+..|.+.+.+
T Consensus 199 ~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 199 EPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred CcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence 11123345668999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 212 GCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 212 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
....++++..... ..+...+|..+...++++.|+.+|++++..... .++.......++
T Consensus 278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek 342 (539)
T KOG0548|consen 278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEK 342 (539)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHH
Confidence 9999988765442 234445677888889999999999998876544 122222457788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
++...+...-.+|.-.......|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|++..|+...+++++++
T Consensus 343 ~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 343 ALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88888888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
|+....|...|.++..+.+|++|++.|+++++.+|++.++.-.+.+|...+.......+.+++
T Consensus 423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999998876544455555555
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=6.3e-20 Score=190.30 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=237.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q 005626 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLG 198 (687)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la 198 (687)
...|.+....|+++.|.+.+.++.+..|+.... +...+.+....|+++.|..++.++.+..|+.. .+....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 455667778888888888888888877765443 44566777778888888888888888877764 4566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HHH
Confidence 888889999999999999999999999999999999999999999999988888775444332211111 11111 111
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHH
Q 005626 279 EGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDK 352 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~ 352 (687)
.+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2334445567777777666 5899999999999999999999999999999999987532 233333445688999
Q ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 353 AVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 353 A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999 57778888655 569999999999999999999998
Q ss_pred Hhc
Q 005626 429 LKI 431 (687)
Q Consensus 429 l~~ 431 (687)
+..
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 764
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=1.4e-19 Score=187.75 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=185.8
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY 126 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (687)
....+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|.+++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445566677777777777777777777777776666667777777777777777777777777776664 3455567777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS 202 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~ 202 (687)
...|++++|...++++++..|+++.+ +..++.++...|++++|++.+.+..+....++.... ....-+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777665 555566666667777777777777766443333221 1111123
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
..+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-------------- 302 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-------------- 302 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence 33344444556666666555 467777777777777777777777777777777765421100
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~ 356 (687)
..........++.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++
T Consensus 303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 1111111222344555566666666666666 5555666666666666666666
Q ss_pred HH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 357 ~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (687)
|+ ++++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 35555554433 33666666666666666666666554
No 45
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.89 E-value=1.8e-20 Score=194.47 Aligned_cols=373 Identities=20% Similarity=0.178 Sum_probs=273.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (687)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (687)
+++...|...|-+++.+++.-+.++..+|..|....+...|..+|++|.++++.+..+.-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (687)
Q Consensus 141 ~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (687)
.+-+..|..... ..+..+|..+...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+
T Consensus 551 ~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 665555543221 225568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC----
Q 005626 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (687)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 296 (687)
+|.+....+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..++++.++..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888888889999888888777777777777777665431
Q ss_pred ----CCCHHHHHHHHHHHHh-----------------------cCCH------HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 297 ----WHYADAMYNLGVAYGE-----------------------MLKF------DMAIVFYELAFHFNPHCAEACNNLGVI 343 (687)
Q Consensus 297 ----p~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~al~~~p~~~~~~~~la~~ 343 (687)
-++...|..++....- .+.. --+.+++-..+++.. ++..|+++|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGin 784 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGIN 784 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHH
Confidence 1111111111111100 0000 012222222222211 14455555555
Q ss_pred HHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 344 YKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 344 ~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.|+|.++...
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 544 1233456666666666666666666666655 4445666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCChhhhh
Q 005626 416 GSISLAIDAYEQCLKIDPDSRNAGQ 440 (687)
Q Consensus 416 g~~~~A~~~~~~al~~~p~~~~a~~ 440 (687)
.+++.|...|.++..++|.+...+.
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHH
Confidence 6666666666666666666554443
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=1.3e-22 Score=200.18 Aligned_cols=262 Identities=21% Similarity=0.197 Sum_probs=122.8
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (687)
..++.++...|++++|++.+.+.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35688888999999999999766544 488999999999999999999999999999999999988888888888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCH
Q 005626 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF 316 (687)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 316 (687)
+++++|+.+++++.+..++ +..+. ....++...++++++...++++.... +.++..+..+|.++.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~-------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLL-------SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cchhh-------HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999998876643 22222 23334455789999999999977655 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (687)
++|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998763
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6.8e-20 Score=167.71 Aligned_cols=382 Identities=18% Similarity=0.155 Sum_probs=292.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC--------ChHHHHHHHHH-HHhcC--CCC----
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN---- 115 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~---- 115 (687)
-+-+|..+++...|+...+++...++..|++..+|.....++-..- +-.+|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 3557889999999999999999999999999999999888876542 22345555442 12111 100
Q ss_pred ---------H-----------HHHHHHHHH-HHHcCCHHHHHHH--------------------------------HHHH
Q 005626 116 ---------A-----------CAHTHCGIL-YKDEGRLVEAAES--------------------------------YHKA 142 (687)
Q Consensus 116 ---------~-----------~~~~~la~~-~~~~g~~~~A~~~--------------------------------~~~a 142 (687)
. .+....... -.+-|..+.|+.. |-.+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl 166 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL 166 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence 0 000000000 0011112222111 1112
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 005626 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG 212 (687)
Q Consensus 143 l~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~ 212 (687)
-+++|+.......+...++. .+++..++...|-......++.+ |. +......+|.||+.+|.+.+|.+
T Consensus 167 sRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek 244 (478)
T KOG1129|consen 167 SRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK 244 (478)
T ss_pred hhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence 22333322222223333333 23445567777766555555442 11 23344579999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 005626 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (687)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (687)
.++..++..|. ++.+..++.+|.+..+.+.|+..+.+.++..|.+.......+ +++...++.++|.++|+.+
T Consensus 245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A-------Ri~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA-------RIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH-------HHHHHHHhHHHHHHHHHHH
Confidence 99999998775 889999999999999999999999999999999876555444 4455567999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHH
Q 005626 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 369 (687)
Q Consensus 293 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 369 (687)
++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++.... .-.+
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 2367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
+|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+-.+...|+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988777664
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.88 E-value=1.3e-17 Score=187.66 Aligned_cols=367 Identities=14% Similarity=0.073 Sum_probs=262.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
+...++..-..+.+.|++++|+++|++..+.+.- +...+..+...+...|..++|...++.... | +...+..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 4556677777888899999999999998876532 333344455566777888888887776643 3 4566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE 203 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 203 (687)
.+...|++++|...++++.+...... ..++..+...+.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKAD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 78888888888888888876543311 112566667777788888888888888766432 57778888888888
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHhchhhhh
Q 005626 204 LMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 204 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
.|++++|++.|++..+.. ..+...|..+...+.+.|++++|.+.|+++... .|+. . ++..+...+.+
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~k 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACAN 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHHH
Confidence 888888888888876543 123677888888888888888888888887652 3432 1 23334444555
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
.|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|+.+|+++.+.. ..+...+..+...+.+.|++++|.+.
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 678888888888877765 3456777778888888888888888888877652 22366777777888888888888888
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 357 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 357 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+.|++++|.+.|++..+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88877653 335667778888888888888888888877653 34 3566777888888888888888888876543
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=3.8e-19 Score=183.40 Aligned_cols=303 Identities=11% Similarity=0.007 Sum_probs=238.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHH
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-AYYNL 197 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l 197 (687)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+... .....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566677789999888777776554322 222 1333455567889999999999999888888753 33445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHhchhh
Q 005626 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKV 276 (687)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-~~~~~~l~~~~ 276 (687)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+....++.....+ ..++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998888776654433211 12222222222
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
....+.+...+.++......|+++.+...++..+...|+.++|.+.++++++. +.++......+.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22345556666666666667889999999999999999999999999999994 4456555555544 44999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999954 46689999999999999999999998864
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=5.1e-19 Score=180.12 Aligned_cols=349 Identities=16% Similarity=0.091 Sum_probs=293.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHH-HHHhCChHHHHHHHHHHHhcCC-----CCHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAVKLDP-----QNACA 118 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (687)
..+.|...+..+...|.-..|+.+++..+... |.+...+...+.. ....+..++++++..+++...- -.+..
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 46778899999999999999999999999988 7777666665554 5567999999999999998431 23567
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh-
Q 005626 119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (687)
Q Consensus 119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (687)
+..+|.+|..+- ...++++.++++++.+|.|+.+ .+.++.-|..+++.+.|.+..+++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 888888776432 3567899999999999999876 777888888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------
Q 005626 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS----------- 255 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 255 (687)
..+++.+|..++.++...+++.+|+...+.+++..++|.........+-...++.++|+..+...+..-
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 556899999999999999999999999999999988876655555555555666666666555444331
Q ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 256 ---------------------------------------------------PNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 256 ---------------------------------------------------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
|.....+...-..+...+..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 11112233333444456677778889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 362 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 362 (687)
|..++.++-.++|.....++..|.++...|++.+|.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
++|.++++|+.+|.++...|+.++|.++|..++++.+.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987664
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.5e-19 Score=169.08 Aligned_cols=304 Identities=17% Similarity=0.125 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (687)
+.-+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|.+....-..|..+...|+++.-.......+
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 33333344444444555555555555555555555555555555555555555555555555555555555554444444
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (687)
Q Consensus 144 ~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (687)
......... ++.-+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+.|.
T Consensus 294 ~~~~~ta~~-------wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 294 AKVKYTASH-------WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred hhhhcchhh-------hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 443322222 2233333344455555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005626 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (687)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 303 (687)
..+.|..+-.+|...|++.+|...-+.+++..| .++.++
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~-----------------------------------------~sA~~L 405 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ-----------------------------------------NSARSL 405 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh-----------------------------------------cchhhh
Confidence 555555555555555555555555555554444 444444
Q ss_pred HHHH-HHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 304 YNLG-VAYG-EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (687)
Q Consensus 304 ~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 381 (687)
..+| .++. .-.--++|.+++++++.++|....+-..++.++...|+++.++..+++.+...|+. ..+..||.++...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 4443 2221 12223556666666666666666666666666666666666666666666555442 4555566666666
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005626 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (687)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (687)
+.+.+|+.+|..++.++|++..+...+-.+-....
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 66666666666666666666655555544444333
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.87 E-value=6.1e-18 Score=169.03 Aligned_cols=372 Identities=19% Similarity=0.223 Sum_probs=270.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
....++..+...+..++|.+.++..+++++..|++.+.+..+|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
....+|++|+++|+.|+.+.|+|... +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 66777777778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 207 YDTALGCYEKAALER---PMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 207 ~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
+..|...++...+.. |.. .........+..+.|..++|.+.+.+--..--+ .+ ......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D------kl-a~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD------KL-AFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH------HH-HHhhhHHHHHHH
Confidence 999999888876654 322 344555666777788888777766553221111 11 122334556666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCC------------------------
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHC------------------------ 333 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~------------------------ 333 (687)
.+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|..
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 789999999999999999998887777666665333333333 3444333322211
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcC------------CCC--HHHHHHHHHHHHHcCCH
Q 005626 334 --------AEACNNLGVIYKDRDNLDKAVECYQMAL-------SIK------------PNF--SQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 334 --------~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~------------p~~--~~~~~~la~~~~~~g~~ 384 (687)
+.+...+-.+| .+..+ ...+++.+ .-. |-. ...++.++.-+...|++
T Consensus 312 ~~~l~Kg~p~vf~dl~SLy---k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLY---KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHhhcCCCchhhhhHHHH---hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 00000111111 01111 11222221 110 111 12445566777777777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
+.|..+++.|+...|...+.+...|+++...|+.++|..++.++.++|-.|+
T Consensus 388 ~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 388 EVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 7777777777777777777777777777777777777777777777765544
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=9.2e-22 Score=194.15 Aligned_cols=261 Identities=20% Similarity=0.178 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
.+..|..++..|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 345577777777777777777554433 366666666677777777777777777777777666666666666666 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCC
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 206 (687)
.+++++|+..++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 66777777666666554432 221 2333344555566666666666655433 4455666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHH
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~ 286 (687)
.++|+..++++++.+|++..+...++.++...|+.+++.+.++...+..|++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~---------------------------- 213 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD---------------------------- 213 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS----------------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH----------------------------
Confidence 6666666666666666666666666666666666666555555555444443
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
+..+..+|.++..+|++++|+.+++++++.+|+++..+..+|.++...|+.++|..++++++
T Consensus 214 -------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 -------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred -------------HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444455555555555555555555555555555555555555555555555555555544
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=2.8e-19 Score=192.48 Aligned_cols=250 Identities=12% Similarity=-0.004 Sum_probs=152.1
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
+.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777777777777777777766533 2366777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 321 (687)
++|+..|+++++++|++...+..++.++.. .|++++|+..++++++.+|.++.....++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777777666554444433333 4566666666666666666665555455555555666666666
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 322 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
.+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|...|+ +|...+++.++....
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 666666553 55566666666666666666666666666665566655566666666655553 555555554443222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
...-...+..++.-.|+.+.+..+ +++.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 222222255555555555555555 44443
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=7.4e-19 Score=195.96 Aligned_cols=400 Identities=14% Similarity=0.025 Sum_probs=316.1
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.+...+..+...+.+.++++.|.+++..+.+. .| +...+..+...|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHH
Confidence 45677778888888899999999999888764 34 567888888999999999999999988753 3566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHcCChH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQ 174 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~la~~~~~lg~~~~~~g~~~ 174 (687)
..|.+.|++++|+..|+++.+....... ....-..++..+...|.+.|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 8999999999999999988764321100 00001223666778888999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (687)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (687)
+|.+.|++.. +.+...|..+...|.+.|++++|++.|++..+.. .-+..++..+...+.+.|++++|.+.+..+++
T Consensus 277 ~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 277 DARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998763 4578899999999999999999999999987653 23567899999999999999999999999988
Q ss_pred cCC-CcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Q 005626 254 VSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-P 331 (687)
Q Consensus 254 ~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p 331 (687)
..- .+.. ++..+...|.+.|++++|...|++..+ .+...|..+...|.+.|+.++|++.|+++.+.. .
T Consensus 354 ~g~~~d~~-------~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIV-------ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCee-------ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 752 2222 344555666678899999999998754 356789999999999999999999999988753 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005626 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (687)
Q Consensus 332 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (687)
.+...+..+...+.+.|..++|.++|+...+..+ .+...+..+..+|.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll 501 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALL 501 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHH
Confidence 3477788888999999999999999999986432 23457888999999999999999998764 2334 366799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHH
Q 005626 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (687)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (687)
..+...|+.+.|...+++.+++.|++...+. .+.-.|...|..+++.+..+....
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~--~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchH--HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998766544 344567777887777666554433
No 56
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=6.5e-17 Score=181.97 Aligned_cols=359 Identities=13% Similarity=0.047 Sum_probs=297.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHH
Q 005626 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLVE 134 (687)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~ 134 (687)
..+...|..++|..+++.... | +...+..+-..+...|++++|...++++.+... .+...+..+...|.+.|+.++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 446677899999999887654 4 567888888889999999999999999988654 367788899999999999999
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 135 AAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALG 212 (687)
Q Consensus 135 A~~~~~~al~~~~~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 212 (687)
|.+.|+++.+.... +.. .|..+...|.+.|++++|+..|.++.+..- -+...|..+...+.+.|++++|.+
T Consensus 491 A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999876432 233 367777888899999999999999976532 247789999999999999999999
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhchhhhhcCCHHHHHH
Q 005626 213 CYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (687)
Q Consensus 213 ~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~ 287 (687)
.++++... .| +...+..+...|.+.|++++|.+.|+++.+... .+... |..+...+.+.|++++|+.
T Consensus 564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t-------ynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-------YTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH-------HHHHHHHHHhcCCHHHHHH
Confidence 99999763 34 467888999999999999999999999988753 23333 3444455566789999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 005626 288 YYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK- 364 (687)
Q Consensus 288 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 364 (687)
+|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999998763 2246788899999999999999999999999874 4568899999999999999999999999987542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
..+...|..+...|.+.|++++|++.|++.... .|+ ...+..+...+.+.|++++|.+++.++++...
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 235678999999999999999999999998765 344 66777888999999999999999999988643
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.6e-20 Score=184.02 Aligned_cols=260 Identities=19% Similarity=0.247 Sum_probs=204.6
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHH
Q 005626 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 318 (687)
-.+|..++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764311100000000000000111234455666777777777 678888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (687)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (687)
|+.+|+.++...|++...|+.||-.+....+.++|+..|++|+++.|....++++||..++.+|.|++|.++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888875
Q ss_pred CCc----------HHHHHHHHHHHHHcCCHHH
Q 005626 399 PTY----------AEAYNNLGVLYRDAGSISL 420 (687)
Q Consensus 399 p~~----------~~~~~~la~~~~~~g~~~~ 420 (687)
+.. ..+|..|-.++..+++.+-
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 441 2355555555555555543
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=4.1e-19 Score=191.15 Aligned_cols=250 Identities=15% Similarity=0.024 Sum_probs=149.0
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005626 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (687)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~ 167 (687)
++++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..+ +..+|.++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~ 348 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHH
Confidence 345666666666666666666666666555422 23566666666666666666554 44445555
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (687)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (687)
...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666655555555555556666666666
Q ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005626 248 YERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (687)
Q Consensus 248 ~~~al~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (687)
++++++.. |+++..+..++.++.. .|++++|...+++.....|....+...++..+...| ++|...+++.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 66666553 4555555555555544 346666666666666666666666666666666666 3566555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
++.......-......++.-.|+.+.+..+ +++.+.
T Consensus 500 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 500 LESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 543222222222255666666666666665 555443
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=3.9e-18 Score=175.89 Aligned_cols=295 Identities=10% Similarity=-0.025 Sum_probs=145.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhH-HHHHHHhCChHHHHHHHHHHHhcCCCCHHHH-HHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACAH-THCGILY 126 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~ 126 (687)
...+..|...+..|+|++|.+.+.+.-+..+ ++..++.+ +......|+++.|..++.++.+.+|++..+. ...+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3445555566666666666655555433322 22333333 4444666666666666666666666553222 2335666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HHH
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NLG 198 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la 198 (687)
...|++++|...++++.+..|+++.+ +..++.++...|++++|+..+.+..+..+.++.... .+.
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666554 333444445556666666666665555444322111 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
.......+-+...+.++..-+..|+++.+...++..+...|+.++|.+.++++++..++
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~--------------------- 295 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD--------------------- 295 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------------
Confidence 11111222233333333333334455556666666666666666666666666553332
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
+......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+
T Consensus 296 ---------------------~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 296 ---------------------ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred ---------------------HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2222222221 22445555555555555555555555555555555555555555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (687)
++++..|++.. +..++.++.+.|+.++|..+|++++.
T Consensus 353 ~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 353 AALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555544322 33455555555555555555555544
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=3.1e-19 Score=156.55 Aligned_cols=215 Identities=24% Similarity=0.240 Sum_probs=198.6
Q ss_pred ccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (687)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (687)
.......+..+.+|..|++.|++..|...++++++.+|++..++..++.+|...|+.+.|.+.|+++++++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 44445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (687)
.|..++.+|++++|...|++++.. |..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++...
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 999999999999999999999873 443332 445899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
+..|+|..|..++++.....+-..+.+.....+-...|+-+.+-++=.+.-...|...+.
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999888889999999999999999999999888888889987643
No 61
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=8.1e-18 Score=187.68 Aligned_cols=369 Identities=14% Similarity=0.031 Sum_probs=293.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc--CCCCHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC 122 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 122 (687)
+...+......+...|++++|+.+|+.+....+ -+...+..+..++...++.+.|.+.+..+.+. .| +...+..+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 334566777888999999999999999876543 35678888889999999999999999988874 44 57788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------------------HhHHHHHHcCChH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT----------------------------DLGTSLKLAGNTQ 174 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~----------------------------~lg~~~~~~g~~~ 174 (687)
...|.+.|++++|.+.|++..+ |+ ...+..+...+. .+...+...|...
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999998754 22 222333322222 2223445567778
Q ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 175 DGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (687)
Q Consensus 175 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (687)
.+.+.+..+++.. ..+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|++.|++..+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 8888777776653 3356788889999999999999999998763 45788999999999999999999999999876
Q ss_pred c--CCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005626 254 V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (687)
Q Consensus 254 ~--~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (687)
. .|+. . ++..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 319 ~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 319 SGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred cCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 4 3432 2 34444455556789999999999999876 55678899999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Q 005626 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNN 407 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 407 (687)
.+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+..++...|+.++|.++|+...+..+ .+...|..
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 356789999999999999999999999988753 22466788888999999999999999999987432 23567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 408 LGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+..+|.+.|+.++|.+.+++. ...|+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 999999999999999998874 23444
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4.7e-20 Score=168.76 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=225.9
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
...+|.+|...|.+.+|.+.++.+++..|. ++.+..|+.+|.+..+.+.|+..+.+.++..|.+...+..++.++..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 356899999999999999999999987664 8899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 319 (687)
++++|.++|+.+++.+|.+.++.. .++..|+-.++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiA-------cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIA-------CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeee-------eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999876543 3455555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 320 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 320 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (687)
+..|++++.... .-.++|+++|.+....|++.-|.++|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999998743 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHH
Q 005626 397 ANPTYAEAYNNLGVLY 412 (687)
Q Consensus 397 ~~p~~~~~~~~la~~~ 412 (687)
..|+-.+..++++.+-
T Consensus 458 ~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQFMS 473 (478)
T ss_pred hCccccccccceeEEe
Confidence 9999888888876543
No 63
>PLN03077 Protein ECB2; Provisional
Probab=99.86 E-value=1.1e-17 Score=191.15 Aligned_cols=355 Identities=15% Similarity=0.073 Sum_probs=241.1
Q ss_pred HHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 005626 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTD 162 (687)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~ 162 (687)
+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++.+.. |+... +..
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ 394 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IAS 394 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHH
Confidence 3344444444555555555554432 1233345555555555555555555555443322 32211 222
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
+-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCH
Confidence 22334445555555555555555432 2355667778888888888888888887543 3456788888888899999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH----------------------------HhchhhhhcCCHHHHHHHHHHHH
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALT----------------------------DLGTKVKLEGDINQGVAYYKKAL 293 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~----------------------------~l~~~~~~~~~~~~A~~~~~~al 293 (687)
++|+..|+++....+.+...+..+..++. .+-..|.+.|+.++|...|+..
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 99999998887543333323322222222 2335677889999999999876
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHH
Q 005626 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQ 369 (687)
Q Consensus 294 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 369 (687)
+.+..+|..+...|...|+.++|+++|+++.+. .|+ ...+..+...+.+.|+.++|.++|+...+..+ -+..
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 557788999999999999999999999998875 344 55566677789999999999999999885432 2357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~ 449 (687)
.+..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+. +++..|.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~--ll~n~ya 702 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCNLYA 702 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHHH
Confidence 8899999999999999999999885 35555 677888888888999999999999999999999876544 3445566
Q ss_pred cCCChHHHHHHHH
Q 005626 450 NEGHDDKLFEAHR 462 (687)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (687)
..|..+++.+..+
T Consensus 703 ~~g~~~~a~~vr~ 715 (857)
T PLN03077 703 DAGKWDEVARVRK 715 (857)
T ss_pred HCCChHHHHHHHH
Confidence 6776665544433
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.9e-20 Score=174.84 Aligned_cols=301 Identities=17% Similarity=0.138 Sum_probs=221.2
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
...++.....+..++...+|.+|+..+..+++..|+++..|...+.+++..+++++|.-..++.++++|.........+.
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---CCCHHHHHHHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGVVY 201 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~ 201 (687)
++...++..+|...++ +..+ + ....|+..+++.+..+ |....+....+.|+
T Consensus 126 c~~a~~~~i~A~~~~~--------~~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl 179 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLK--------SKQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECL 179 (486)
T ss_pred hhhhhHHHHHHHHHhh--------hhhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhh
Confidence 9999999999988887 1111 0 1223334444443332 33455667788999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC
Q 005626 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 281 (687)
...|++++|...--..+++++.+.++++..|.++.-.++.+.|+..|++++.++|+....... .
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~----~------------ 243 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA----S------------ 243 (486)
T ss_pred hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----h------------
Confidence 999999999999999999999999999999999999999999999999999999986533211 0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECY 357 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 357 (687)
..|+-...+..-|.-.++.|++.+|.+.|..++.++|++ ...|.+++.+...+|+..+|+...
T Consensus 244 -------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 244 -------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred -------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 011122334445555566666666666666666666554 344555555555555555555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
+.++++++....++...|.|+..+++|++|++.|+++++...+
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5555555555555555555555555555555555555555433
No 65
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.9e-20 Score=182.77 Aligned_cols=266 Identities=21% Similarity=0.267 Sum_probs=217.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|+|.+++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 44456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~ 204 (687)
...|.-.+|..++.+.+...|........--...............+..-.+.|..+....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988763221000000000000001111223455667777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|.+..++++++..+.++| .|++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG-------~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG-------AYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh-------hHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888888865 9999
Q ss_pred HHHHHHHHHHhCCCC----------HHHHHHHHHHHHhcCCHHHH
Q 005626 285 GVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 285 A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A 319 (687)
|.++|-.++.+.+.. ..+|-.|=.++...++.|.+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 999999999876541 13455555555555555533
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.4e-17 Score=152.74 Aligned_cols=320 Identities=19% Similarity=0.198 Sum_probs=256.1
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 237 (687)
.|..+...++.++|+..|..+++.+|...++...||+++...|..+.|+..-+..++. |+. ..+...+|.-|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 4556667789999999999999999999999999999999999999999998877654 432 4578899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHh
Q 005626 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE 312 (687)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 312 (687)
.|-++.|...|....+...--.. ++..+-.+|....++++|++..++..+..++. +..+..++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~-------AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEG-------ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 99999999999998765433222 44556667777899999999999999988765 3568899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
..+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..||.++|+.++.+..+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHhhh
Q 005626 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471 (687)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (687)
.++.+..++ +++...++.+-....-.+.|..++.+-+...|+-...+.-.-+.+.-..+|...+.+...+.......+.
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 999998877 5566677777778888899999999999999985543322222232333443444444333332221111
Q ss_pred ccCcCCCCCCCCCCCCeEEEEecCCcccch
Q 005626 472 YSQYTSWDNTKDPERPLVIGYVSPDYFTHS 501 (687)
Q Consensus 472 ~~~~~~~~~~~~~~~~lriGy~S~df~~h~ 501 (687)
.+ .=|.-+.||-+.-|.+|-
T Consensus 352 ~~----------~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 352 KP----------RYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred cC----------CceecccCCcceeeeeeC
Confidence 11 135667787777777663
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=3.7e-18 Score=168.39 Aligned_cols=222 Identities=17% Similarity=0.114 Sum_probs=150.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (687)
.++.+.++..+.+++...+-++.. .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~---~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEE---RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 456778888888888755543332 34558888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHH
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~ 288 (687)
+|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++... .+.. +....+++++|+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----~~~~---l~~~~~~~~~A~~~ 187 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-----LWLY---LAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----HHHH---HHHccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876211 0111 11224567777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 289 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
+++.....+.. .+. .+.+....|+..++ ..++.+. ++.|...++|+++|.++...|++++|+.+|++++
T Consensus 188 l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 188 LKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 76655433221 111 23444445544332 1222222 2333444555555555555555555555555555
Q ss_pred hcCC
Q 005626 362 SIKP 365 (687)
Q Consensus 362 ~~~p 365 (687)
+.+|
T Consensus 264 ~~~~ 267 (296)
T PRK11189 264 ANNV 267 (296)
T ss_pred HhCC
Confidence 5553
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=3e-18 Score=169.06 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 62 NKFVDALALYEIVLEKDS---G-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (687)
Q Consensus 62 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (687)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455556666666664322 1 244555566666666666666666666666666555555555555555555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (687)
Q Consensus 138 ~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (687)
.|+++++++|++..+ +..+|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..++++
T Consensus 120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHH
Confidence 555555555554433 4445555555555555555555555555554421111 11222334455555555443
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC
Q 005626 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (687)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 297 (687)
....+... +. .+.++...|+..++ ..++.+. +.++...+..|
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~----------------------------------~~~~~~~~l~~ 233 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLK----------------------------------AGATDNTELAE 233 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHH----------------------------------hcCCCcHHHHH
Confidence 33221111 11 12233333333222 1222222 11222233445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 005626 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKD 346 (687)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 346 (687)
...++|+.+|.++...|++++|+.+|+++++.+| +..+..+.+..+...
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 5667888888888888888888888888888886 555555555554444
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.82 E-value=6.4e-17 Score=161.81 Aligned_cols=348 Identities=14% Similarity=0.108 Sum_probs=268.0
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 161 (687)
...++..+.-.+..++|.+.++..+.+++..|++++.+...|..+..+|+.++|......++..++.+.-. |.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wH 79 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HH
Confidence 34667777778899999999999999999999999999999999999999999999999999988887655 77
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
.+|.++....+|++|+++|+.|+...|++..++..++.+..++++++-....-.+.++..|..-..|...+..+...|++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 005626 242 ESAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (687)
Q Consensus 242 ~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 318 (687)
..|....+...+.. |+... .....+......+....|..++|++.+..--...-+........+.++.+++++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~--~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKED--YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHH--HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 99999988887665 33222 22233344445566667888888888776554444445566778999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHH-------------HHHHHHHHH---HHc
Q 005626 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFSQ-------------SLNNLGVVY---TVQ 381 (687)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~-------------~~~~la~~~---~~~ 381 (687)
|+..|...+..+|++...+..+-.++..-.+.-+++ ..|...-+..|.... ....+..++ .+.
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 999999999999999998888877775333444444 555554444332110 000001110 001
Q ss_pred -------------CCHHHHHHHHHHHHHh-----C--------------CCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 382 -------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 382 -------------g~~~~A~~~~~~al~~-----~--------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
.+..+. ..+++.+.. . |-. ...++.++.-+...|+++.|..+...
T Consensus 318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111111 133333321 1 111 34567889999999999999999999
Q ss_pred HHhcCCCChhhh
Q 005626 428 CLKIDPDSRNAG 439 (687)
Q Consensus 428 al~~~p~~~~a~ 439 (687)
|+.-.|.-.+..
T Consensus 397 AIdHTPTliEly 408 (700)
T KOG1156|consen 397 AIDHTPTLIELY 408 (700)
T ss_pred HhccCchHHHHH
Confidence 999999876654
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.4e-16 Score=153.65 Aligned_cols=391 Identities=14% Similarity=0.039 Sum_probs=272.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
...++..-..+...|+|++|++...+++...|++..+......++.+.++|++|+...++-......+ ...+..+.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 36788888999999999999999999999999999999999999999999999995554433222222 22378899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--------------------
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-------------------- 187 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------- 187 (687)
+++..++|+..++ ..++.+... +...+.+++++|+|++|+..|+..++.+
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 9999999999998 334444333 4455666677799999999998775432
Q ss_pred ----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCCH
Q 005626 188 ----------PH-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 188 ----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~ 241 (687)
|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 11 35678999999999999999999999995431 11 123567889999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH------------------------------------------Hhchhhhhc
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALT------------------------------------------DLGTKVKLE 279 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~------------------------------------------~l~~~~~~~ 279 (687)
++|...|...++.++.+.........-+. +.+.+....
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988765432211111110 111111111
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
+..+.+.+.....-...|....-.........+...+.+|++++....+.+|.. ..+...++.+...+|+++.|++.+.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111222211111111122222222222333333337888999999998888887 6788889999999999999999999
Q ss_pred HHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 359 MALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDA 424 (687)
Q Consensus 359 ~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (687)
..+... ...+.+-..+-..+...++-+-|...+.+++.- .+.....+..++..-.+.|+.++|...
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 443221 123444455555666777666666666666543 233334566677788888999999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhc
Q 005626 425 YEQCLKIDPDSRNAGQNRLLAMNYI 449 (687)
Q Consensus 425 ~~~al~~~p~~~~a~~~~~~~~~~~ 449 (687)
+++.++.+|++.++...+..+..++
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc
Confidence 9999999999999998887777665
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.82 E-value=5.5e-18 Score=176.30 Aligned_cols=376 Identities=16% Similarity=0.165 Sum_probs=282.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHhHHHHH-----HHhCChHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGN--------------------VEAHIGKGICL-----QMQNMGRLAFDSF 105 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------------------~~~~~~la~~~-----~~~g~~~~A~~~~ 105 (687)
...++.+......|.+|...+.......-++ ....+..+..+ ..+++...|...|
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al 481 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL 481 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4555556666677777777776665544111 11111111111 2334578899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005626 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (687)
-+++++++..+.++..+|.+|....+...|.++|.++.++++.+..+ ....+..+....+++.|......+-+
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998777 44556667777999999999777766
Q ss_pred hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005626 186 IDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (687)
Q Consensus 186 ~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (687)
..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+....+
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 66643 3456679999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 005626 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHF------- 329 (687)
Q Consensus 264 ~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 329 (687)
..+..... .|.+.+|+..+...+..... ..+.+...+..+...|-..+|...+++.++.
T Consensus 635 k~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 635 KEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 66666655 46999999999888766433 3456666666666677777777777777654
Q ss_pred C-CCCHHHHHHHHHHHH-------------------H----cCCH------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 330 N-PHCAEACNNLGVIYK-------------------D----RDNL------DKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (687)
Q Consensus 330 ~-p~~~~~~~~la~~~~-------------------~----~g~~------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 379 (687)
. -++...|..++.... . ++.. --|.+++-..+++.. ++..|+++|.-|+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYL 786 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHH
Confidence 1 222333333332221 1 1111 123344444444322 2668999998887
Q ss_pred H--------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 380 V--------QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 380 ~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
+ +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+..+|.....+.|+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 6 2344589999999999999999999999988 667999999999999999999998888774
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1.5e-17 Score=160.27 Aligned_cols=205 Identities=20% Similarity=0.163 Sum_probs=188.4
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
..+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (687)
+...|++++|+..+++++...+... ....+..+|.++...|++++|...+.++++.+|++...+..+|.++...|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 9999999999999999998542211 12336778999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
++++|+..++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999989889999999999999999999999988776554
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-18 Score=164.40 Aligned_cols=277 Identities=19% Similarity=0.203 Sum_probs=237.3
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (687)
+.-....|..++...+|.+|+..+..+++..|+++..|.+.+.+++..+++++|....++.+++.|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 44466677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH------------hcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005626 237 NRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al------------~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 304 (687)
..++..+|.+.++..- .+.|.+... -.....-..-+.++...+++++|...--..+++++.+.++++
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 9998888887665221 011111000 000011112233444567999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----H
Q 005626 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----S 368 (687)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 368 (687)
..|.++...++.+.|+..|++++.++|+.. +.+..-|.-.++.|++.+|.++|..++.++|++ .
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 999999999999999999999999998763 456677888999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
..|.+++.+..++|+..+|+...+.++++++....++...|.++..++++++|++.|+++++...+
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 478999999999999999999999999999999999999999999999999999999999998766
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=1.3e-17 Score=146.45 Aligned_cols=206 Identities=23% Similarity=0.217 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
..+...||.-|++.|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 34555666666666666666666666666666666666666666666666666666666666655554
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g 348 (687)
.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|
T Consensus 103 -----------------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g 153 (250)
T COG3063 103 -----------------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG 153 (250)
T ss_pred -----------------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC
Confidence 455555555666666666666666666653 3444666777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
+.+.|.++|+++++++|+.+.....++...+..|++..|..++++.....+-.++.+....++-...|+-+.|-.+=.+.
T Consensus 154 q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 154 QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777776666666666666667777777777777776666
Q ss_pred HhcCCCChh
Q 005626 429 LKIDPDSRN 437 (687)
Q Consensus 429 l~~~p~~~~ 437 (687)
.+..|....
T Consensus 234 ~r~fP~s~e 242 (250)
T COG3063 234 QRLFPYSEE 242 (250)
T ss_pred HHhCCCcHH
Confidence 666776544
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.82 E-value=1.5e-17 Score=169.80 Aligned_cols=245 Identities=23% Similarity=0.315 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 005626 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 257 (687)
.|....+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666777788999999999999999999999988 5555566667999999999999999999999987431
Q ss_pred cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005626 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 258 ~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (687)
....+...+.++.+|+..|...|++++|..++++++++. |.-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 112233567788889999999999999999999999773 223457889999999999999999999999986
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (687)
Q Consensus 330 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (687)
++..+..+.++|.+|..+|++++|.++|++++++. +.....+.++|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23447789999999999999999999999999874 22355889999999999999999999999
Q ss_pred HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9876 3455678999999999999999999999998853
No 76
>PLN03077 Protein ECB2; Provisional
Probab=99.81 E-value=2.2e-16 Score=180.55 Aligned_cols=360 Identities=10% Similarity=0.009 Sum_probs=280.8
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc--CCCCHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCG 123 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 123 (687)
.+...+..+...|.+.|++++|.++|++... .+...|..+...|.+.|++++|++.|++..+. .|+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3566778888999999999999999998643 35678999999999999999999999988664 3544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (687)
..+...|++++|.+.+..+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 5778889999999999888876543221 2366677778888888888888887643 345678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHH
Q 005626 204 LMQYDTALGCYEKAALERPMYAEA-----------------------------------YCNMGVIYKNRGDLESAIACY 248 (687)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~-----------------------------------~~~la~~~~~~g~~~~A~~~~ 248 (687)
.|+.++|+..|++.....+.+... ...+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 888888888888886542222222 223446778888888888888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005626 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (687)
Q Consensus 249 ~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (687)
++. +.+...|.. +...+...|+.++|++.|++..+... .+...+..+-..+...|+.++|.++|+.+.
T Consensus 548 ~~~----~~d~~s~n~-------lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH----EKDVVSWNI-------LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc----CCChhhHHH-------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 775 333444444 44445557899999999999887532 244556667778999999999999999998
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 328 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 328 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
+.. ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...+
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 543 234678999999999999999999999985 35554 67788888888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
..++.+|...|++++|.+..+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999887653
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.4e-15 Score=141.95 Aligned_cols=370 Identities=14% Similarity=0.074 Sum_probs=292.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
+...++..|+--..++++..|.+.|++++..+..+...|+..+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45567778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
..+|+...|.+.|++.++..|+. .+ +......-.+.+..+.|...|++-+-.+|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~e-qa-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDE-QA-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcH-HH-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 99999999999999999999984 33 333334444556777777777777776665 5667777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------------
Q 005626 207 YDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF------------------------- 258 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------- 258 (687)
...|...|++|++.-.++. ......|..-..+..++.|.-.|+-+++.-|.+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 7777777777776544432 223334444445556666666666666655543
Q ss_pred -------------------HHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHH-H
Q 005626 259 -------------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGV-A 309 (687)
Q Consensus 259 -------------------~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~-~ 309 (687)
.++|..+. .+....|+.+.-.+.|++++...|...+ .|.+.+. .
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdyl-------rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYL-------RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHH-------HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 33332222 2233457899999999999988776432 2333322 2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005626 310 YGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 385 (687)
-....+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+ ........+-.++++++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFD 454 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHH
Confidence 245788999999999999998865 7889999999999999999999999999999985 45556667778899999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
...++|++-++..|.+..+|...|.+-..+|+.+.|...|+-|++...
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999987643
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.6e-16 Score=145.93 Aligned_cols=299 Identities=18% Similarity=0.181 Sum_probs=251.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 005626 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (687)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (687)
+..|.-+.-.++.++|+..|..+++.+|+..++ ...+|+.+...|..+.|+..-+..++ .|+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHH
Confidence 345666677889999999999999999988776 67788888999999999999877665 4543 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhch
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~ 274 (687)
..||.-|+..|-++.|...|....+...--..++..+..+|....+|++|++.-++..++.++. ....++..|..++.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~--~~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT--YRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc--chhHHHHHHHHHHH
Confidence 8899999999999999999999988766667899999999999999999999999999998875 34578899999999
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005626 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 353 (687)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A 353 (687)
.+....+.+.|...++++++.+|+...+-..+|.+....|+|+.|++.++.+++.+|+. +++...|..+|.+.|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 77889999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 005626 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCL 429 (687)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al 429 (687)
+..+.++.+..+.. ++...++..-....-.+.|..++.+-+...|+.-..+..+..-.. .-|...+....++..+
T Consensus 269 ~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 269 LNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 99999999987764 555667777777777899999999999999985444433332222 2234555555555543
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=3.8e-17 Score=157.37 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566677777777777777777777777777777777777777777777777777777766666655543
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 348 (687)
..+..+|.++...|++++|+..+++++... +.....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 444555555556666666666666665532 344556667777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
++++|...++++++.+|++...+..+|.++...|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HhcCC
Q 005626 429 LKIDP 433 (687)
Q Consensus 429 l~~~p 433 (687)
....|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 55443
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.80 E-value=9.8e-17 Score=163.82 Aligned_cols=241 Identities=25% Similarity=0.344 Sum_probs=204.3
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 220 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 220 (687)
..+...++..|..+|++++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344666999999999999999999999998 5555566667999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC---
Q 005626 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--- 296 (687)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 296 (687)
+|..+.++.+||.+|...|++++|..++++++++... .......++..+..++.++..++++++|..++++++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 4455778999999999999999999999999987544 112233456677888888888999999999999998763
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 297 -----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 297 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
+..+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|.+.|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2345689999999999999999999999999873 334678899999999999999999999998876
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 364 -------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 364 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
No 81
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=5.3e-17 Score=159.16 Aligned_cols=210 Identities=12% Similarity=0.060 Sum_probs=167.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhc
Q 005626 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (687)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~ 279 (687)
+...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..+|...+.++..++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----- 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----- 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----
Confidence 334567778888888888888888888888888888777 56788888888888888887777777766665542
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HH
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DK 352 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~ 352 (687)
...++++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..+|+.++.++... |.+ ++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 12366788888888888888888888888888888888888888888888888888888888887765 222 46
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 353 AVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
++.+..+++.++|++..+|..++.++.. .++..+|...+.+++...|++..++..|+.+|...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888889999999999999998888887 45567788888888888888888888888888763
No 82
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=3.2e-16 Score=153.74 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=147.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
..++.++|+..+.++++++|++..++.. .+.++...| ++++++..++++++.+|++..+|..++.++...|+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~-------R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHF-------RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHH-------HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 3455666666666777777766665333 333333334 46777777777777777777777777777777766
Q ss_pred H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 207 Y--DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 207 ~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
. ++++.+++++++.+|.+..+|..++.++...|+++++++.+.++++.+|.+..++...+.++..++.........++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 3 66777788888888888888888888888888888888888888888888887777777666554321111123456
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++..+|.++.++..++.++..
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7777778888888888888888877776 3445667777777777777777777777777764
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=8.3e-15 Score=136.10 Aligned_cols=364 Identities=14% Similarity=0.053 Sum_probs=210.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005626 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (687)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (687)
+-++.+.+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 445678899999999888776554433 5667789999999999999999998888777778889999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHH--------------------HH---HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005626 135 AAESYHKALSADPSYKPAAECL--------------------AI---VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (687)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~l--------------------a~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (687)
|.....++ |+++-....+ .. -...++.+.+..-.|++|++.|.+++..+|+..
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 98776654 2222111100 00 012244445555566777777777776666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc------------
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF------------ 258 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~------------ 258 (687)
..-..+|.||+++.-++-+.+.+.-.+...|+..-+...++..+.+.=+-..|..-....... +...
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 666667777777777777777666666667766666665555554432222222211111110 0000
Q ss_pred ------------HHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005626 259 ------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (687)
Q Consensus 259 ------------~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (687)
+.....+..+-.++...+..+++.++|..+.+. ++|..+.-+...|.+....|+--...+.++.+
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 001111122233344445555666666655443 45666666666666666665543333333322
Q ss_pred Hh---h------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 327 FH---F------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 327 l~---~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
-+ + .-+.......++.+++...++++.+.++...-...-++....+++++++...|++.+|.+.|-+.-..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 22 1 11122234445555555566666666666655555566666666666666666666666666554332
Q ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 398 N-PTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (687)
Q Consensus 398 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (687)
. .+.......|++||...|+.+.|.+.+-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 1222333456666666666666665553
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.75 E-value=6.9e-15 Score=151.31 Aligned_cols=211 Identities=17% Similarity=0.048 Sum_probs=145.0
Q ss_pred CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (687)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (687)
+|+.+.++..+|..+...|+.+++...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888877776644 445667778888888888888888888888888765432
Q ss_pred HHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005626 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (687)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (687)
. +..+..++ ...+....+.+.+......+|.....+..+|.++..+|++++|+..++++++..|++..++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444455444443345666677777888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh
Q 005626 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (687)
+...|++++|+..+++++...|..... ....+..++.++...|++++|+..+++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888888888877642211 1122333444444455555555555555433
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.5e-13 Score=129.41 Aligned_cols=384 Identities=15% Similarity=0.074 Sum_probs=283.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
....++..+..-++.+....|..++++++..-|.--..|+.....-..+|+...|.+.|++.++..|+. .+|......-
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHH
Confidence 455688899999999999999999999999999988999999888889999999999999999988853 4555555666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH-----------------------
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------------------- 183 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a----------------------- 183 (687)
.+.++.+.|...|++.+-..|+-.. +...+..-...|+...|...|+++
T Consensus 185 lRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6666777777777777666665221 333344444444444444444444
Q ss_pred --------------HhhCCCC--HHHHHHHHHHHHHcCC---HHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 184 --------------LKIDPHY--APAYYNLGVVYSELMQ---YDTALG-----CYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 184 --------------l~~~p~~--~~~~~~la~~~~~~g~---~~~A~~-----~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
+..-|.+ .+.+..+-..--+-|+ .++++- -|++.++.+|.+.++|+..-.+-...|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 4444443 2222222222222232 122221 244556678888899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchh---hhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHh
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGE 312 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 312 (687)
+.+.-.+.|++++...|....-..-.-.+|.-+..+ .....+.+.+.+.|+.++++-|.. +.+|...|....+
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 999999999999988876443222222222222111 123678999999999999998863 5789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
+.+...|.+.+-.++-..|.+ ........+-.++++++....+|++.++..|.+..+|...|.+-..+|+.+.|...|+
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999984 4455556677788999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 393 KAIAANPTY-AE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 393 ~al~~~p~~-~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
-|+....-+ ++ .|......-...|.++.|...|++.|+..+... .+..
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 999875433 22 334444555678999999999999999988765 4433
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.74 E-value=8.4e-15 Score=150.69 Aligned_cols=309 Identities=16% Similarity=0.073 Sum_probs=229.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005626 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (687)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (687)
+|+.+.++..+|.++...|+.+.|...+.++.+..+.+.... ......+..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 799999999999999999999999999999998888765432 2245567888899999999999999999999998
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005626 192 PAYYNLGVVYSELMQ----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (687)
Q Consensus 192 ~~~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 267 (687)
.++.. +..+...|+ ...+.+.+.......|.....+..+|.++...|++++|+..+++++++.|++...+..++.
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 77775 555555444 4444444444335667778888899999999999999999999999999998665555544
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH---
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN--- 338 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~--- 338 (687)
++ ...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ......
T Consensus 157 i~-------~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 157 VL-------EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred HH-------HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 44 447799999999999999876433 34668999999999999999999999876662 222111
Q ss_pred HHHHHHHHcCCHHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHH
Q 005626 339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA 404 (687)
Q Consensus 339 ~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 404 (687)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++........ ...+
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 222233334433333222 1 111111121 2233346888889999999999999887664322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 405 YNNLGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
....+.++...|++++|.+.+..++.+-
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999764
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=4e-14 Score=131.63 Aligned_cols=375 Identities=15% Similarity=0.092 Sum_probs=284.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc--------------CC-
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP- 113 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p- 113 (687)
...+..|.+++..|+|++|+..|+-+.+.+..+.+.+.++|.|++-+|.|.+|...-.++-+. +.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 445678999999999999999999999988788899999999999999999999877665321 11
Q ss_pred -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005626 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (687)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (687)
+..+-...++.+.+..-.|++|++.|++++..+|+.... -..++.+|++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 112334566777777778999999999999988886543 44567788888999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 005626 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (687)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------l~~~p----~~~~~~~~ 230 (687)
.++..|+++.+...++...++.=+-..|..-.+.. ++.-| .-+++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 99999999988888877766543222222222211 12222 13678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 005626 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGV 308 (687)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 308 (687)
+...|.++++..+|+...+. ++|..+..+...+.+...+|.-........-|.+.++-.-... -+.......++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 99999999999999988764 6888888888888888888866555555555655555432211 122234566777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Q 005626 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAA 387 (687)
Q Consensus 309 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 387 (687)
.++-..++++.+.++...-....++....++++..+...|++.+|.+.|-+.-... .+.......|+.||...++.+-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 88888899999999999888888888999999999999999999999998876554 33445667899999999999999
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 388 AEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 388 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
-..+-+. ..|.. -..+..++....+.+++--|.+.|...-.++|+.
T Consensus 448 W~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8776542 12222 3345667888889999999999999988888874
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.70 E-value=7.4e-14 Score=150.45 Aligned_cols=162 Identities=12% Similarity=0.050 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
..+++.-........|.+.+++.+||.+....|.+++|+..++.++++.|++..++.+++.++.+.+++++|+..+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 33444444445566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
..+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....+
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776655555
Q ss_pred HH
Q 005626 442 RL 443 (687)
Q Consensus 442 ~~ 443 (687)
++
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 44
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=6.8e-15 Score=141.40 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=158.2
Q ss_pred ccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHH-
Q 005626 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC- 117 (687)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (687)
+.....++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34457788999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005626 118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (687)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (687)
+++.+|.++... |++++|++.+++++..+|++......+ ..++.... .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~----------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R----------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence 789999999876 889999999999999999986653322 11111110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (687)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (687)
.......+|.++...|++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01224578888999999999999999999987654 57899999999999999999998888776655
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.5e-12 Score=129.53 Aligned_cols=370 Identities=14% Similarity=0.053 Sum_probs=252.6
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
+.+..++...-.++++.++|++|+.+.++-......+ ...+..+.|.+++++.++|+..++ ..++.+..++...|.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 3566777888889999999999996544432211111 223789999999999999999998 456667778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------------------HHHHHHhHHHHHHcCChHHHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECL------------------------AIVLTDLGTSLKLAGNTQDGIQKY 180 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l------------------------a~~~~~lg~~~~~~g~~~~A~~~~ 180 (687)
+++++|+|++|...|+..++.+.++.+..... -..+++.+.++...|+|.+|++.+
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999999999977665543322111 123677888899999999999999
Q ss_pred HHHHhh--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------
Q 005626 181 YEALKI--------DPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY----------------- 228 (687)
Q Consensus 181 ~~al~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------------- 228 (687)
++++.+ +.+ -..+...++.++..+|+.++|...|...++.+|.+....
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccC
Confidence 999544 111 134567889999999999999999999998876553211
Q ss_pred --------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhh
Q 005626 229 --------------------------------CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (687)
Q Consensus 229 --------------------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~ 276 (687)
.+.+.+.+..+..+.+.+...+.-...|... . .++..-.. .
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~---~---~~ll~~~t-~ 351 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESL---F---PILLQEAT-K 351 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHH---H---HHHHHHHH-H
Confidence 1112222222222222222221111122111 1 11111111 1
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcC
Q 005626 277 KLEGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHF-------NPHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g 348 (687)
.....+.++.+++....+.+|.. ..+...++.+.+.+|+++.|++.+...+.. ....+.+-..+-.++...+
T Consensus 352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK 431 (652)
T ss_pred HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc
Confidence 11226788888998888888887 678889999999999999999999943321 1223445555556666777
Q ss_pred CHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005626 349 NLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421 (687)
Q Consensus 349 ~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 421 (687)
+.+.|...+.+++.. .+.....+...+..-.+.|+-++|...+++.++.+|++.+++..+...|... +.+.|
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka 510 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKA 510 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHH
Confidence 666666666666543 3333446667788888889999999999999999999999999998887665 45666
Q ss_pred HHHHH
Q 005626 422 IDAYE 426 (687)
Q Consensus 422 ~~~~~ 426 (687)
..+-+
T Consensus 511 ~~l~k 515 (652)
T KOG2376|consen 511 ESLSK 515 (652)
T ss_pred HHHhh
Confidence 55443
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=1.6e-12 Score=123.87 Aligned_cols=298 Identities=13% Similarity=0.058 Sum_probs=209.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 201 (687)
|..-...|+|.+|++...+.-+..+...-+ +..-+....+.|+++.+-.++.++-+..++ ...+...++.+.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 444455677777777777765554443222 444455666667777777777777766333 345566677777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHhchhhhhcC
Q 005626 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-MAIALTDLGTKVKLEG 280 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-l~~~~~~l~~~~~~~~ 280 (687)
...|+++.|.....++++..|.++.++.....+|...|++.+...++.+.-+..--+..-... --.++..+-+-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 777777777777777777777777777777777777777777777777665543222111111 1111111111111112
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (687)
..+.-..+++..-..-..++.....++.-+..+|+.++|.+..+.+++..-+.. ....++ ...-++...=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 222223455554444556788889999999999999999999999998765433 222222 24567889999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
++..|+++..+..||..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.+++++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 678899999999999999999999999854
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.67 E-value=1.6e-12 Score=135.02 Aligned_cols=275 Identities=16% Similarity=0.069 Sum_probs=203.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
.+.++-++.++...|++++|++.+++....-.+....+..+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46678889999999999999999999888888899999999999999999999999999999999999999999988874
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCCHHHH------------HHHHH-------------HHHHhHHHHHHcCChHHHH
Q 005626 128 DEG-----RLVEAAESYHKALSADPSYKPAA------------ECLAI-------------VLTDLGTSLKLAGNTQDGI 177 (687)
Q Consensus 128 ~~g-----~~~~A~~~~~~al~~~~~~~~~~------------~~la~-------------~~~~lg~~~~~~g~~~~A~ 177 (687)
... +.+.-...|++.....|...... ...+. ++..+-..|....+..-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 332 56777888888877777633221 11111 1111222222222222222
Q ss_pred HHHHHHHhh---C------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 178 QKYYEALKI---D------------PHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 178 ~~~~~al~~---~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
..+...... . |.. ..+++.+|..|...|++++|+++++++++..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 222222211 0 111 24668889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Q 005626 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---------ADAMYNLGVAYG 311 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~ 311 (687)
+.+|.+.++.+..++..+-......+..+ .+.|+.++|.+.+......+-+. .......|.+|.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~-------LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYL-------LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHH-------HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765444444333 34679999998888776554211 112345788999
Q ss_pred hcCCHHHHHHHHHHHHhh
Q 005626 312 EMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 312 ~~g~~~~A~~~~~~al~~ 329 (687)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999999999888775
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.65 E-value=9.6e-15 Score=138.31 Aligned_cols=294 Identities=22% Similarity=0.273 Sum_probs=197.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY 195 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 195 (687)
-|.-+++.|++...+..|+.+++...++.. .+..+|..+|+.|...++|++|+++-.--+.+ .-..+..--
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 356677888888888888888887766544 36777888999999999999998875433322 223455667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 005626 196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE 249 (687)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 249 (687)
+||+++.-+|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 889999999999999988887765432 236788999999988765 234445555
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 005626 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY 323 (687)
Q Consensus 250 ~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 323 (687)
.-+++..+.. .....+.++-++|+.|...|+++.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|
T Consensus 180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 4444433322 223446677788888888888888888777666554332 246777888888888888888888
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 324 ELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 324 ~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
++.+.+. ...+...+.+|..|.-..++++|+.++++-+.+.. ....+++.||..+...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7766541 12245567777777777777777777777666532 22446777777777777777777777
Q ss_pred HHHHHhC-----CC-cHHHHHHHHHHHHHcCCHH
Q 005626 392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSIS 419 (687)
Q Consensus 392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 419 (687)
++.+++. +. ...+..++...-..+|..+
T Consensus 339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 7666542 11 2334555555555555543
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.63 E-value=2.5e-12 Score=149.34 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=275.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHc
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~ 129 (687)
....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 345567788899999988766554211 1122445556777778888887777665531 11223455567778888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 005626 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (687)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 202 (687)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876533211 0111134445567888899999999999999999854432 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHhchh
Q 005626 203 ELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (687)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~l~~~ 275 (687)
..|++++|...+++++...... ..++..+|.++...|++++|...+++++........ ........+..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 9999999999999998763321 346678899999999999999999999876432110 001112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 005626 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (687)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~ 343 (687)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.... .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77789999999999998875322 24466778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 005626 344 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (687)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 413 (687)
+...|+.++|..++.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568999999999887665332222 2256889999999999999999999988622 23567889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCh
Q 005626 414 DAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
..|+.++|...+++++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876543
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.63 E-value=1.6e-13 Score=148.34 Aligned_cols=290 Identities=13% Similarity=0.085 Sum_probs=226.0
Q ss_pred HhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (687)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (687)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.++++++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 357889999999999999999999999999999999999999999999999999998877766 555554443
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005626 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (687)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (687)
.++ .+++++...+...+++..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 344 5566666666667888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005626 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (687)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 315 (687)
... +.++|++++.+++... ...+++.++.+++.+.+..+|.+.+.+..+-......-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 999 9999999999998751 124589999999999999999987765544333222211
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
+..+ ...+.-+-..|...+++++++.+++.+++.+|++..+...++.+|. +.|.. ...++..+
T Consensus 219 ~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 219 FTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred cchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 2222 3445556677788889999999999999999999999999999887 34433 44444444
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
++. .+-....++..|+..|++.+..++.+--.+
T Consensus 282 ~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 282 KMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 431 111122456788888888888888765443
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=8.4e-12 Score=119.06 Aligned_cols=297 Identities=14% Similarity=0.010 Sum_probs=203.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGIL 125 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 125 (687)
.+......|..-+..|+|.+|.+...+.-+-.+...-.+..-+...-++|+++.|-.++.++-+..++ ........+.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 45566777888888999999999999988777777778888889999999999999999999998444 45677888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHHH--
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGVV-- 200 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-- 200 (687)
....|+++.|.....++++..|.++.. +.....+|...|++.+...++.+.-+..--+.+ -+-+.+..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 555566777889999999988887665332211 11111111
Q ss_pred HHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhh
Q 005626 201 YSELMQYDTA---LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (687)
Q Consensus 201 ~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~ 277 (687)
+.+.++-+.+ ..+++..-..-..++.....++.-+...|+.++|.+..+++++..-+.. +...+-. .
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-----l 305 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-----L 305 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----c
Confidence 1122222222 2244433333445677778888888889999999999888887755432 1111111 1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (687)
.-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+++.+++..|+ ...+..+|.++.+.|+..+|.+.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence 1345555566666666666666666666666666666666666666666655544 445555666666666666666666
Q ss_pred HHHH
Q 005626 358 QMAL 361 (687)
Q Consensus 358 ~~al 361 (687)
++++
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 6555
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=8.7e-15 Score=127.16 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
..++++++++|++ +..+|.++...|++++|+.+|++++.++|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4455555555543 3445666666666666666666666666666666666666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~ 443 (687)
++.+++++|.++..+|++++|+..|++++++.|+++..+.++.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 6666666666666666666666666666666666665554443
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=6.9e-14 Score=134.40 Aligned_cols=182 Identities=16% Similarity=0.077 Sum_probs=146.0
Q ss_pred hCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (687)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (687)
.++..+..++.+|..++..|++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++....
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455778999999999999999999999999999999876 5789999999999999999999999999999877642
Q ss_pred HHHHHHHHHhHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005626 154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (687)
Q Consensus 154 ~~la~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (687)
.+++.+|.++... |++++|+..+++++..+|++......+..+.... .. ..
T Consensus 108 ----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~ 166 (235)
T TIGR03302 108 ----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LA 166 (235)
T ss_pred ----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HH
Confidence 2356666666654 7899999999999999999876654333222111 10 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhchhhhhc
Q 005626 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (687)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~l~~~~~~~ 279 (687)
.....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+.....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 234578899999999999999999999997764 578899999999988765443
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.4e-14 Score=125.94 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
..+++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899998874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=2.4e-12 Score=133.80 Aligned_cols=312 Identities=12% Similarity=0.030 Sum_probs=216.4
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 160 (687)
+.+.++....++...|++++|++.+++..+.-.+....+-..|.++..+|++++|...|...+..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778889999999999999999999999888999999999999999999999999999999999999988755544433
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
.... -....+.+.-...|++.....|...... .+...+..-..+.. +..++...+.. .-|.....+-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 2211 0112356777888888877777643322 22222222223333 33444444433 44566666666666444
Q ss_pred CHHHHHHHHHHHHhc---CCC----c---HHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005626 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (687)
Q Consensus 240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 309 (687)
+..-....+...... ... . ......+.++++.++..+...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333333221 100 0 011122344556666677777888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHH
Q 005626 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---------SQSLNNLGVVYTV 380 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~ 380 (687)
+...|++.+|.+.++.+-.++..+-.+....+..+++.|+.++|.+.+....+.+-+. .......|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888887765544211 1133456888888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 005626 381 QGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~ 397 (687)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888888888887765
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-14 Score=136.03 Aligned_cols=269 Identities=25% Similarity=0.302 Sum_probs=208.9
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 231 (687)
.-|.-+.+.|+....+..|+.+++...++ ..+|..||++|+.+++|++|+++-..-+.+ .-..+..--++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34667788899999999999999997776 456788999999999999999986543332 22345667789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC--------------------HHHHHHHHHH
Q 005626 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYKK 291 (687)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 291 (687)
|.++.-+|.+++|+.+..+-+.+..... ....-+.+++++|.+|...|+ ++.|.++|..
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877654322 223345666677776665443 3455666666
Q ss_pred HHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 292 ALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 292 al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-+|+++.|+++|++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 55553332 246788999999999999999988877766332 246889999999999999999999999
Q ss_pred HHhcC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 360 ALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 360 al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
.+.+. . ..+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||..+..+|..++|+.+.++
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 87653 2 2355788999999999999999999999887643 2356889999999999999999999988
Q ss_pred HHhc
Q 005626 428 CLKI 431 (687)
Q Consensus 428 al~~ 431 (687)
.+++
T Consensus 341 hl~~ 344 (639)
T KOG1130|consen 341 HLRS 344 (639)
T ss_pred HHHH
Confidence 8775
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.2e-12 Score=116.41 Aligned_cols=363 Identities=16% Similarity=0.124 Sum_probs=245.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (687)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (687)
..+++..+|.+|++++..-.+.+|.+...+..+|.||+...++..|.++|++.-.+.|......+..+..+++.+.+..|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhc----------------CCCCH-HHH--------HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005626 136 AESYHKALSA----------------DPSYK-PAA--------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (687)
Q Consensus 136 ~~~~~~al~~----------------~~~~~-~~~--------~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (687)
+......... ..++. ... ..-+....+.|.+.++.|+++.|++.|+.+++...-+
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8877654331 11100 000 0012235567777888899999999999999888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHcCCH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY-------------------------AEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~~ 241 (687)
+..-++++.++++.+++..|+++....++. .|.. .+++...+.++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 888889999999999999998888777653 3321 24566667778888888
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005626 242 ESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 319 (687)
+.|.+.+...--.... ++....+++.. + ..+++.+...-++-.+.++|--.+.+.++-.+|.+..-|+-|
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALM--N------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHh--c------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 8887765443211111 22223333221 1 135677777778888888887778888888888888877777
Q ss_pred HHHHHHHHhhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--cC---CHHHH
Q 005626 320 IVFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--QG---KMDAA 387 (687)
Q Consensus 320 ~~~~~~al~~~p~~-----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~g---~~~~A 387 (687)
...+.+ +|+. ....+++-..+. ..-..++|.+-+.+.-..- .+-+..++ .+... .+ ...+|
T Consensus 330 ADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 330 ADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 665533 3332 122233333332 2335555555444432211 11111111 11111 11 13345
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
++.|++++++. ..+....+++|+...++..+.+.|++..+...++.
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 55566665542 34677788999999999999999999988877654
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=1.3e-13 Score=126.59 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=130.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (687)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 353 (687)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566778777654443221 1110 112367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|++..+++++|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 005626 431 IDPDSRN 437 (687)
Q Consensus 431 ~~p~~~~ 437 (687)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9988653
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.56 E-value=1.9e-11 Score=142.08 Aligned_cols=349 Identities=13% Similarity=-0.021 Sum_probs=256.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC---------CHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (687)
+.+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+.++....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 3445567777788888887777665411 11234455677888889999999999999988764321 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 192 (687)
...++.++...|++++|...+++++...+.... ...+.+...+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223345677888999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (687)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 6678899999999999999999999875221 23345678899999999999999999998865432211 1
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 005626 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (687)
Q Consensus 265 l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 334 (687)
....+..++.++...|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23455667888888999999999999997653321 1111 1122445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005626 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (687)
Q Consensus 335 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (687)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 2256789999999999999999999988632 234578899999999999999999999999986543
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.9e-12 Score=115.61 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=161.6
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
...++...|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 005626 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKIDP 433 (687)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p 433 (687)
+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| +.+-|.++|.++++++|
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999998877 67889999999999999
Q ss_pred CChhhhhhHHHHhhhcc
Q 005626 434 DSRNAGQNRLLAMNYIN 450 (687)
Q Consensus 434 ~~~~a~~~~~~~~~~~~ 450 (687)
.+..+.....++...+.
T Consensus 223 ~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 223 KNLRALFGIYLCGSALA 239 (289)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 88888877766665553
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.54 E-value=8.1e-13 Score=121.24 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 355 (687)
.++.++++..++++++.+|++.+.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005626 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (687)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (687)
.++++++.+|++..++..+|.++...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999886543
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=4.3e-10 Score=113.17 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=102.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
-+..++...+.+..+|+...-...|.++|..-|- +..+|-..-......+-.+-++..|++.++..|...+- .-.
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie 177 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIE 177 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHH
Confidence 4567778888899999999999999999987763 44566666666667778889999999999999876443 345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-------CCCHHHH-------------------------------HHHHHHHHHhHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSAD-------PSYKPAA-------------------------------ECLAIVLTDLGTS 166 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~-------------------------------~~la~~~~~lg~~ 166 (687)
.+...+++++|.+.+...+..+ +++...+ ..++.++..|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5677888888888887776432 1111111 2234567789999
Q ss_pred HHHcCChHHHHHHHHHHHhh
Q 005626 167 LKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~ 186 (687)
|.+.|.+++|...|++++..
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999998865
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.3e-11 Score=108.80 Aligned_cols=186 Identities=17% Similarity=0.151 Sum_probs=154.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005626 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 266 (687)
.++...++-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44455666677778888999999999999998888999999999999999999999999999999999998876665444
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
.++.. +|+..+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-++|.++..+..+|.+++.
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 44433 56777899999999999999999999999999999999999999999999999988888888888887
Q ss_pred cC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (687)
Q Consensus 347 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 379 (687)
+| +++-|.++|.++++++|.+..+++.+-.+..
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 76 6677888899999988877777766655443
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=1.8e-12 Score=117.25 Aligned_cols=177 Identities=23% Similarity=0.217 Sum_probs=139.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005626 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (687)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (687)
+...+-+....+|++... ..++..+.. .|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 444444555556665544 444433333 446666666666666667777777777888888888999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005626 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (687)
Q Consensus 324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (687)
+++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 404 AYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
+..+|+.+...+|++++|...-.+-
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcccc
Confidence 8889999999999988888765543
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=1.7e-12 Score=140.57 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=182.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005626 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (687)
Q Consensus 186 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 265 (687)
.+|.+..++..|...+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 47888999999999999999999999999999999999999999999999999998887766 666555443
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
.++ .+++++...+...+.+..+++.+|.+|.++|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55566666666677777899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--------------------H
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~ 405 (687)
.. +.++|++++.+|+.. +...+++.++..++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 98 999999999999876 566678888888888888888876443 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~ 443 (687)
.-+-..|...+++++++.+++.+|+.+|.|..++..+.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22336788888999999999999999999888876654
No 111
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=2.3e-10 Score=115.16 Aligned_cols=356 Identities=14% Similarity=0.145 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGILYKDEGRLVEAAESYHK 141 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 141 (687)
|..--.+|++++-.--+-+.+|......+..+|+...-...|.+++..-|- +..+|-..-......+-.+-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 444555666666655556788999999999999999999999999998774 445666666667778888999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------------------------CCCC-------
Q 005626 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------------DPHY------- 190 (687)
Q Consensus 142 al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~~------- 190 (687)
.++..|+..+.+ ...+...+++++|.+.+...+.. +|+.
T Consensus 164 YLk~~P~~~eey----------ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd 233 (835)
T KOG2047|consen 164 YLKVAPEAREEY----------IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD 233 (835)
T ss_pred HHhcCHHHHHHH----------HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH
Confidence 999999864432 22334456666666666555432 2221
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------------
Q 005626 191 --------------APAYYNLGVVYSELMQYDTALGCYEKAALERP---------------------------------- 222 (687)
Q Consensus 191 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------------------------- 222 (687)
...|..||..|.+.|.+++|...|++++..--
T Consensus 234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 34678999999999999999999999865311
Q ss_pred ---------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHH
Q 005626 223 ---------------------------------MYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIA 268 (687)
Q Consensus 223 ---------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~~ 268 (687)
++...|.. .+-...|+..+-+..|.++++ .+|... .-..+..
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~L 389 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTL 389 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhH
Confidence 11111111 111223445555555655553 344322 2223455
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-------------
Q 005626 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------- 331 (687)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------- 331 (687)
+..++..|...|+.+.|...++++.+..-. ...+|...|..-....+++.|+++++++...-.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 667788888899999999999999877533 256888888888999999999999998876521
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHH
Q 005626 332 -----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEA 404 (687)
Q Consensus 332 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 404 (687)
.+..+|..++.+....|-++.....|++.+.+.--.|....|.|..+....-++++.+.|++.+.+. |.-.++
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 1246777888888888999999999999999988889999999999999999999999999999885 444555
Q ss_pred HHHHH---HHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 405 YNNLG---VLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 405 ~~~la---~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
|...- ..-..--+.+.|...|++||+..|
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 54322 222233478899999999999888
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=4.5e-12 Score=114.66 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (687)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..+.++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666677778889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (687)
Q Consensus 144 ~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (687)
...|++... +..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.
T Consensus 128 ~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 128 RLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred ccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 999999887 7788888889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 224 YAEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
+..+..+++.+...+|++++|.....+-
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999999999998876553
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.49 E-value=2.6e-12 Score=131.17 Aligned_cols=225 Identities=19% Similarity=0.163 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005626 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (687)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 267 (687)
|........++.++...|-..+|+..+++ ...|.....+|...|+..+|.....+-++.+| ++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~~------- 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDP-DPR------- 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cch-------
Confidence 33455667889999999999999999988 46777888999999999999999998888444 333
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (687)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.+.++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 3444454444344455555554433 3456777777788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
++++.|.++|..++.++|++.++|.+++..|...++-.+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHhcCCC
Q 005626 428 CLKIDPD 434 (687)
Q Consensus 428 al~~~p~ 434 (687)
.+.+.-+
T Consensus 613 ll~~~~~ 619 (777)
T KOG1128|consen 613 LLDLRKK 619 (777)
T ss_pred HHHhhhh
Confidence 8876433
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.1e-12 Score=113.87 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=99.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|...+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
++..++.+|.++...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888887654
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.2e-12 Score=120.61 Aligned_cols=113 Identities=29% Similarity=0.475 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (687)
++-+-.-|.-+++.++|.+|+..|.+|++++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHh
Q 005626 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (687)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~ 446 (687)
.+|++++|++.|+++|+++|++.....++-.+-
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 999999999999999999999997777764443
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=1.5e-11 Score=132.88 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH
Q 005626 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (687)
Q Consensus 100 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (687)
+++.-+.......|.+++++..+|.+....|++++|...++.+++..|++..+ ...++.++.+.+++++|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHHH
Confidence 33333444445567777788888888888888888888888888888877666 55556666666788888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005626 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (687)
Q Consensus 180 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (687)
+++++..+|+++..++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 88888888888888888888888888888888888888887777788888888888888888888888888877765544
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=7e-12 Score=128.05 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=192.3
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
-..++..+...|-...|+..|++ ...|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 44577788888999999999988 45678889999999999999999999998 6777888988888887777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 319 (687)
-|++|.++.+..- +.+...+|......++++++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 6777776665432 223344555555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (687)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (687)
.++|..++.++|++.++|++++..|...++-.+|...++++++.+-++...|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998874
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=5.2e-12 Score=109.66 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (687)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=5.1e-12 Score=106.84 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 005626 411 LYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~ 432 (687)
++...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777777665
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.1e-12 Score=116.52 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=103.3
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
..++.+-..|..+++.++|.+|+..|.++|+++|.++..|.++|.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAA 153 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (687)
|..+|++.+|++.|+++++++|++....
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999997653
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=9.7e-12 Score=120.73 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
+......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+.. ..+++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence 445556677777788888888887654 5677777888889999999999999988887766543 333444333
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (687)
.+.. ..+.+.+|...|++..+..+.++..+..++.++..+|++++|.+.+++++..+|.++.++.+++.+....|+.
T Consensus 175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3220 1234555666666555554555555555555555555555555555555555555555555555555555554
Q ss_pred -HHHHHHHHHHHhcCCCCH
Q 005626 351 -DKAVECYQMALSIKPNFS 368 (687)
Q Consensus 351 -~~A~~~~~~al~~~p~~~ 368 (687)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 334444444444455443
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=8.4e-12 Score=121.17 Aligned_cols=259 Identities=18% Similarity=0.096 Sum_probs=191.2
Q ss_pred HHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 166 SLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (687)
.++-.|+|..++..++ ....++ ...+....+.+++..+|+++..+.-+.. ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999997776 222333 2355677889999999998877655533 2233355666777776665677777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005626 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (687)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 324 (687)
+..++..+......... .+....+.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77766554332221111 12233445566688999999988764 567888889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 325 ~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
.+.+.+.+..-.....+++....| ++.+|.-.|++..+..+.++..+..++.++..+|++++|...++++++.+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999888877666666666766666 699999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 005626 403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a 438 (687)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899997744
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=2.8e-11 Score=102.41 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=100.5
Q ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 294 YYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372 (687)
Q Consensus 294 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 372 (687)
.+. ++..+..+.+|..+...|++++|...|+.+...+|.+...|++||.++..+|++++|+..|.+++.++|+++..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 445 6667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 373 NLGVVYTVQGKMDAAAEMIEKAIAANP 399 (687)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p 399 (687)
++|.|++..|+.+.|.+.|+.++....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998863
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.31 E-value=1.1e-09 Score=103.73 Aligned_cols=183 Identities=11% Similarity=0.031 Sum_probs=138.2
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACA 118 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 118 (687)
..+++.++..|..++..|+|++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ +.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4578889999999999999999999999999999988654 5899999999999999999999999998876 467
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHH
Q 005626 119 HTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (687)
Q Consensus 119 ~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (687)
++.+|.++...+ + ..+|+..|++.++..|+..-+... ...+ ..+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~rl--------------~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKRL--------------VFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHHH--------------HHH
Confidence 888888764443 1 357889999999999987543211 1110 111
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 181 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
+.. ...--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 171 ~~~------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 171 KDR------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHH------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111 12233466777888888888888888888777654 567777788888888888877765543
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.1e-09 Score=100.12 Aligned_cols=279 Identities=19% Similarity=0.162 Sum_probs=213.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
.+..+|..|++++..-.+.+|.+... +..+|.+|+...++..|..+|++.-...|.........+..+++.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 56778899999999888888877665 67788888888999999999999999999988888888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHH
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~ 286 (687)
+..|+...........-.......-+.+....+++..+....++.-.. +. +....+.|-+..+.|+++.|+
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence 999998887765432223445555566777778877777666553211 22 223455566666788999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC 337 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------------~---------~~~~ 337 (687)
+-|+.+++...-.+-.-++++.++++.++++.|+++..+.++. .|. + .+++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999999998888889999999999999999999988888764 221 1 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 338 NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
+..+.++++.++++.|.+.+.. +-|. +|..+.+++..- ..+++.+...-+.-.+.++|--.+...++-.+|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 6778888899999988776543 3332 456777777543 346677778888888889997788899999999
Q ss_pred HHcCCHHHHHHHH
Q 005626 413 RDAGSISLAIDAY 425 (687)
Q Consensus 413 ~~~g~~~~A~~~~ 425 (687)
.+..-++.|...+
T Consensus 321 CKNeyf~lAADvL 333 (459)
T KOG4340|consen 321 CKNEYFDLAADVL 333 (459)
T ss_pred hhhHHHhHHHHHH
Confidence 9888787777654
No 126
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.3e-08 Score=105.32 Aligned_cols=325 Identities=17% Similarity=0.186 Sum_probs=220.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHH--------HHHhc---CCCCHHHHHHHHHHHHH
Q 005626 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS--------EAVKL---DPQNACAHTHCGILYKD 128 (687)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~---~p~~~~~~~~la~~~~~ 128 (687)
..|+.+.|.+..+-+ .+..+|-++|....+..+.+-|.-++- ++++. +|+ +.-...+.+..+
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHH
Confidence 468888888776654 234678888888887777776655543 22222 333 333455677788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (687)
+|..++|...|.+.-+ +-.+-..|...|.+++|.+.-+.-=.+ ..-..|++.|..+...++.+
T Consensus 813 LgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHH
Confidence 9999999999998765 344556677889999998876542211 12457889999999999999
Q ss_pred HHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005626 209 TALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (687)
Q Consensus 209 ~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 268 (687)
.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-.
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------------- 940 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------------- 940 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------------
Confidence 999999986 22333 3456778889999999999999999988643
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC---------
Q 005626 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC--------- 333 (687)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--------- 333 (687)
++.+-++..-+|+.++|..+.++. .+..+.+.+|+.|...|++.+|+..|.++-.. ...+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344556666677888877665543 45667788888888888888888888776443 1110
Q ss_pred -----HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hhc-----------------CC-CCHHHHHHHHHHHHHcCC
Q 005626 334 -----AEACNNLGVIYKDRD-NLDKAVECYQMA------LSI-----------------KP-NFSQSLNNLGVVYTVQGK 383 (687)
Q Consensus 334 -----~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~~-----------------~p-~~~~~~~~la~~~~~~g~ 383 (687)
+.-....+..|...| +...|+..|.+| +++ +| .++..+...+..+....+
T Consensus 1016 al~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 111222344444444 555555555432 221 23 467788888888888999
Q ss_pred HHHHHHHHHHH------HHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 384 MDAAAEMIEKA------IAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 384 ~~~A~~~~~~a------l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
|++|...+-.+ +.+ .|. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 99988766444 332 111 1357888999999999999988887765
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=2.5e-09 Score=105.37 Aligned_cols=156 Identities=23% Similarity=0.236 Sum_probs=139.2
Q ss_pred CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++.++|.+.+++++.+.|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 377889999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (687)
..++|..+.+.|++.+|+..+++.+..+|+++..|..|+..|..+|+..+|.. ..+..+..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHh
Confidence 66777888888999999999999999999999999999999999998777654 34566778
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 005626 238 RGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~ 257 (687)
.|++++|+..+..+.+....
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCCHHHHHHHHHHHHHhccC
Confidence 89999999999999877643
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=9.4e-10 Score=108.25 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (687)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++.+.++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCh
Q 005626 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~ 454 (687)
+|.+.|++.+|+..++..+..+|+++..|..|++.|..+|+..+|...+.+...+.-+...+...+..+......+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999999999999999999999988877777666555555544443
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.23 E-value=2.3e-10 Score=115.57 Aligned_cols=111 Identities=20% Similarity=0.120 Sum_probs=104.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
..+...|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
.|++++|+..|+++++++|++......+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999998875544333
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=3e-10 Score=114.85 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
..|..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
++|+..|+++++++|++..+...++.+...+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666665555554443
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=2.1e-09 Score=99.66 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=125.3
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH---HHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (687)
.+.+.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 457889999999999999999999999999998875 47899999999999999999999999999999864 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC
Q 005626 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (687)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (687)
+.+|.++.... ...+|+..|+..++..|++..+... -.. +..++..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A----~~~--------------l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA----KKR--------------LAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH----HHH--------------HHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH----HHH--------------HHHHHHHH----
Confidence 88888876543 3458999999999999997654211 000 11111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005626 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAI 245 (687)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 245 (687)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..+..+|..+.|.
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2234456777777777777777777777777765 346677777777777776443
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.20 E-value=5.9e-09 Score=98.91 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=133.4
Q ss_pred CCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (687)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 156 (687)
.++..++..|..++..|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 367788999999999999999999999999999988654 4899999999999999999999999999998775
Q ss_pred HHHHHHhHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (687)
Q Consensus 157 a~~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (687)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445666666543332 1356778888888888886432 1121111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhchh
Q 005626 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (687)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~l~~~ 275 (687)
...-..--+..|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111123345789999999999999999999999998754 5666777888887754
No 133
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.16 E-value=3.5e-07 Score=87.33 Aligned_cols=296 Identities=19% Similarity=0.103 Sum_probs=192.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVV 200 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 200 (687)
-|.+....|+-..|.+.-.++-++-..+.+... ...-+......|+++.|.+.|+.++. +|+ ..-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLI-----hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLI-----HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHH-----HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 355666788888999888888765555544422 23334555667999999999998875 333 12222233333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHhchhhhhc
Q 005626 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLE 279 (687)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~l~~~~~~~ 279 (687)
....|..+.|..+-+++....|.-+.++...-...+..|+++.|+++.+......--... +....+..+...+ .....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence 456899999999999999999999988888888899999999999998876543211111 1111121221111 11123
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
.+...|...-.+++++.|+...+-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 457777777777777777777777777777777777777777777777776642 2 22333333222333333333
Q ss_pred ---HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 005626 360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK 430 (687)
Q Consensus 360 ---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 430 (687)
...+.|++.+.....+..-+..|++..|..--+.+....|. ..++..|+.+-... |+-.++..++-++++
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 33456777777777777777777777777777777777766 44566666666554 777777777777765
No 134
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.16 E-value=5.8e-09 Score=98.11 Aligned_cols=318 Identities=15% Similarity=0.157 Sum_probs=185.6
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
.-....|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.+++++..--..+....+..+. ..+-.+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea 85 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEA 85 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445566667777777777777777776543322 233334456666777766666555444433332221 122334
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAY 228 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 228 (687)
+.+++..+....++.+++.+-...+.+.... ..+...++..+..++.++++++.|+++++...++ ..++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 5555555555555555555555554442211 2344445555555555555555555555543221 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005626 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 308 (687)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 308 (687)
..+|.++....++++|.-+..++.++...... +++.. .| ...+++.++.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-------------------~d~~~---ky---------r~~~lyhmaV 214 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-------------------KDWSL---KY---------RAMSLYHMAV 214 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-------------------CchhH---HH---------HHHHHHHHHH
Confidence 55555555555555555555555444222110 00000 00 1235677788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHH
Q 005626 309 AYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGV 376 (687)
Q Consensus 309 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~ 376 (687)
.+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.|...-.. ..+++...+.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Ak 294 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAK 294 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888888888888888887652 233566677888899999988888888888765322 1345666666
Q ss_pred HHHHcCCHHH-----HHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 377 VYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 377 ~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
++....-..+ |++.-++++++.... ...+..++.+|..+|..++=...+.++-+..
T Consensus 295 c~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 295 CLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 6655444444 788888887764332 3577889999999998888888777765543
No 135
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.15 E-value=2.6e-08 Score=93.82 Aligned_cols=317 Identities=16% Similarity=0.112 Sum_probs=208.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.+...++.|..++...++++|+....+.+..-.+.. ..+-.+..+...+|.|++++..--..+...-+..+..+.+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~- 83 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL- 83 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356678899999999999999999999998654433 3444566778888999888876655554432222222211
Q ss_pred HHHHH-------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 005626 124 ILYKD-------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (687)
Q Consensus 124 ~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (687)
..+.+ ..++.+++.+-+..+. .|....- ..-+.+...+|..+...+.++++++.|+.+++...++
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~-lpgt~~~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLG-LPGTRAG-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCcc-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 12222 2233333333333332 2333221 2223456678899999999999999999999874332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
..++..+|.++....++++|+-+..++.++-... ..+++.. .....+++
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~------------~l~d~~~-------------------kyr~~~ly 210 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY------------GLKDWSL-------------------KYRAMSLY 210 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc------------CcCchhH-------------------HHHHHHHH
Confidence 4578899999999999999999999887653221 1112111 01122334
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHH
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACN 338 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 338 (687)
.++..+..+|..-.|.++.+++.++. +........+|.+|...|+.+.|..-|+.+...... ..+++.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~ 290 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALD 290 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 44444555678888988888887663 223456788999999999999999999999865321 244555
Q ss_pred HHHHHHHHcCCH-----HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 339 NLGVIYKDRDNL-----DKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 339 ~la~~~~~~g~~-----~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
..+.++....-. -.|++.-++++++.... ...+..++.+|..+|.-++=...+.++-+.
T Consensus 291 g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 291 GAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 556655544333 34888888887774332 347788999999988877776666665443
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=7.4e-09 Score=96.00 Aligned_cols=175 Identities=23% Similarity=0.210 Sum_probs=124.2
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 46789999999999999999999999999998875 5789999999999999999999999999999998754 3
Q ss_pred HHHHHhHHHHHH-----------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005626 158 IVLTDLGTSLKL-----------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (687)
Q Consensus 158 ~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (687)
.+++.+|.++.. .+...+|+..|+..++..|++..+- +|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 345555554433 2334577777777777777754321 11111111100 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhchhh
Q 005626 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV 276 (687)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~l~~~~ 276 (687)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 446789999999999999999999999999975 45666777888887543
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.12 E-value=1.9e-09 Score=91.14 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 408 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 408 (687)
+.++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777777777777777777777777665 4577777888888888888888888877777664 5677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
|.++..+|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888887766543
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.12 E-value=2.3e-09 Score=105.17 Aligned_cols=181 Identities=22% Similarity=0.255 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCCHHHHH
Q 005626 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAA 136 (687)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 136 (687)
+|++|..+|+++ |.+|...+++++|.+.|.++....- + -...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 555666655554 5667777888888888887765422 1 134555666666555 999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 005626 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (687)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~ 209 (687)
.+|++++.+.-.... ....+.++..+|.++... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999887443322 233477899999999998 9999999999999987321 14567889999999999999
Q ss_pred HHHHHHHHHHhCCC----C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005626 210 ALGCYEKAALERPM----Y---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (687)
Q Consensus 210 A~~~~~~al~~~p~----~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (687)
|++.|+++....-+ . ...++..+.+++..|+...|...+++....+|...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 99999999875322 1 23456778899999999999999999999988654
No 139
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=6.3e-09 Score=90.90 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=97.2
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005626 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (687)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (687)
.+..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|.+..+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHH
Q 005626 236 KNRGDLESAIACYERCLAVSPNFEI 260 (687)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~ 260 (687)
.--|++.-|.+.+.+..+.+|+++-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999998874
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.10 E-value=6.6e-06 Score=87.18 Aligned_cols=202 Identities=18% Similarity=0.092 Sum_probs=137.7
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
+..++-..-....+++.+|++...++++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD 89 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence 33444455567789999999999999999999999999999999999999999988888777788888899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH--------------
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY-------------- 194 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------- 194 (687)
++++++|..+|++++..+|+ .+. ++.+-.+|.+.+.|.+-.+.--+..+..|+.+..+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCC
Confidence 99999999999999999998 443 22222333333333322222222222222221111
Q ss_pred --------------------------------HHHHHHHHHcCCHHHHHHHHHH-HHHh-CCCCHHHHHHHHHHHHHcCC
Q 005626 195 --------------------------------YNLGVVYSELMQYDTALGCYEK-AALE-RPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 195 --------------------------------~~la~~~~~~g~~~~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~g~ 240 (687)
...-.++..+|++++|...+.. ..+. .+.+..........+...++
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 1112344456777777777732 2222 33334444455566677777
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 005626 241 LESAIACYERCLAVSPNF 258 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~ 258 (687)
+.+-.+...+++...+++
T Consensus 242 w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhCCcc
Confidence 777777777777777765
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.7e-09 Score=98.78 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 005626 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (687)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 392 (687)
.+.-+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566667777888899999999999999999999999999999999999999999999998887654 4678899999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
+++..+|++..+.+.||..++..|++.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999998887643
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.09 E-value=3.2e-09 Score=89.79 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (687)
++.++..|..+...|++++|++.|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (687)
+|.++...|++++|+..++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999997654
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.08 E-value=8.4e-09 Score=101.23 Aligned_cols=182 Identities=23% Similarity=0.287 Sum_probs=116.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (687)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 311 (687)
|.+|...+++++|.+.|.++.....+.. .....+..+...+.++... ++++|+.++++++ .+|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI--------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------HHHH
Confidence 5566666777777777766654432211 1122233444444444333 6666666666655 3445
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCH
Q 005626 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~ 384 (687)
..|++..| ...+..+|.+|... |++++|+++|++|+++... . ...+..+|.++...|+|
T Consensus 106 ~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 55555555 34455677788777 8888888888888877322 1 34677889999999999
Q ss_pred HHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 005626 385 DAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~ 443 (687)
++|++.|++.....-++ ...++..+.++...|+...|...+++....+|.........+
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 99999999988753221 235567788999999999999999999999998776655443
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=5.4e-09 Score=94.17 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=101.7
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH
Q 005626 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (687)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (687)
+-.+.|..+...+.+.++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 34455777777777776665554 5678999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005626 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (687)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (687)
+|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.+
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999999999999999988888888888888888788887755544433
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.06 E-value=1.1e-07 Score=104.14 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhchhhhhcCCHHHH
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A 285 (687)
-.+..+.|++.+.-+|+..-.|...-..+.+.++.++|.+..++++. +++...+-..++-.+|.++-..| |.-+..
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence 33455677888888898888888888888889999999999999886 45655555666666666655444 456666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
.+.|++|.+... ...++..|..+|...+++++|.++|+..++...+...+|..+|..++++.+-++|...+++|++.-|
T Consensus 1517 ~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 777888776542 3457888899999999999999999999999888899999999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 366 N--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 366 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
. +.+.....|.+.++.|+.+.+...|+-.+...|...+.|.-+...-.+.|+.+.+...|++++.+.=.-..+
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 7 778888999999999999999999999999999999999999999999999999999999998876443333
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=8.5e-10 Score=82.64 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 433 (687)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=7e-09 Score=93.47 Aligned_cols=104 Identities=22% Similarity=0.325 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
..++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.+.|.....+.++|.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555555555555555555555444332 23455555555555555555555555555555555555555555
Q ss_pred HH-------HcCCHH-------HHHHHHHHHHhcCCCChhh
Q 005626 412 YR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 412 ~~-------~~g~~~-------~A~~~~~~al~~~p~~~~a 438 (687)
+. .+|+++ +|..+|++++..+|++...
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 44 444544 6666777777788765533
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.04 E-value=3.3e-09 Score=85.61 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777888888888777777777777777888888888888888888888877777777778888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005626 416 GSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 416 g~~~~A~~~~~~al~~~p~ 434 (687)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888887777663
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.7e-09 Score=96.30 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 357 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 357 (687)
..+..+.-++.-+..+|++.+-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 57777888899999999999999999999999999999999999999999999999999999988654 567899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
+++++++|.+..+.+.||..+++.|++.+|...++..++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987653
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=8.7e-09 Score=93.13 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (687)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 374 (687)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345577888888888888888888888888776553 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
|.++...|+...+...+++++. .+++|.+++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777766665542 26788899999999998874
No 151
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.02 E-value=2.1e-10 Score=106.75 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (687)
+-+.|+.|+.+|+|++|+.+|.+.+..+|.++..+.+.+.+|+++.++..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 131 RLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
+..+|.+.++.++++.|++.+....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 999999999999999999877654443
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.01 E-value=2e-08 Score=95.81 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.8
Q ss_pred CchHhHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHH
Q 005626 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (687)
Q Consensus 46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (687)
.+....+..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3567788888887 66899999999999999999998 589999999999999999999999999998887 4789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (687)
++.+|.++...|++++|...|+++++..|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997654
No 153
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.6e-05 Score=78.49 Aligned_cols=384 Identities=13% Similarity=0.067 Sum_probs=240.4
Q ss_pred hHhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHH-HhCChHHHHHHHHHHHhcCC---CC---
Q 005626 48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDP---QN--- 115 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p---~~--- 115 (687)
.+.++.+|+.+...| +..+++++++..+...|.+ +.....+|.+++ ..++.+.|...++++..+.. ..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456788888888888 8899999999888877654 345666776644 56788889999998876532 22
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH---------
Q 005626 116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------- 184 (687)
Q Consensus 116 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al--------- 184 (687)
..+...++.+|.... .+..|...+++++++....+.- -...++.++....-..++..|++.+.-..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 345677788887766 7888888899998887776532 23446667777777777777766542111
Q ss_pred ----------------------------------hh---CCCCH----HHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 005626 185 ----------------------------------KI---DPHYA----PAYYNLGV-VYSELMQYDTALGCYEKAAL--- 219 (687)
Q Consensus 185 ----------------------------------~~---~p~~~----~~~~~la~-~~~~~g~~~~A~~~~~~al~--- 219 (687)
+. +|.+. ..+..+-. .|...|+...+...+++.-.
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 00 11111 11112222 23345665555555554321
Q ss_pred h-CCC------------CHH-----------HHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCcH------HH-HHHHH
Q 005626 220 E-RPM------------YAE-----------AYCNMG--VIYKNRGDLESAIACYERCLAVSPNFE------IA-KNNMA 266 (687)
Q Consensus 220 ~-~p~------------~~~-----------~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~------~~-~~~l~ 266 (687)
. .+. .+. ++..+- ..-...|-+++|.++-++++....+.. .. .....
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 000 111111 111234667777777777765422211 11 11112
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C-- 333 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-- 333 (687)
..+-.+..+....|++.+|++....+.+.. |. .+.....+|......+.++.|...|..+.+.-.. +
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 223334444556789999888877776543 33 2456777888888889999999999998876433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c-
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y- 401 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 401 (687)
+....++|..|.+.|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 34556788999987776554444433 34432 236777788888899999999999999887521 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 402 ----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 402 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
+-.+..|+.+....|+..++.+..+-++++....++
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 334567888889999999999998888877544443
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=1.9e-09 Score=80.77 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 399 (687)
++..|..+|.++...|++++|+.+|+++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666777777777777777777777777777777777777777777777 57777777777777665
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=3.1e-08 Score=86.61 Aligned_cols=117 Identities=23% Similarity=0.188 Sum_probs=93.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH
Q 005626 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (687)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 385 (687)
..++...+...+++.++..|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5777888888888888888877 5667778888888899999999999888877554 347788889999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (687)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (687)
+|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99988866 23334446778888999999999999999998875
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.99 E-value=2.3e-08 Score=105.22 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=118.8
Q ss_pred hCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 005626 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (687)
Q Consensus 295 ~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 361 (687)
..|.+..+| +..|.-+...+. ..+|+.+|+++++++|+++.++..++.++.... +..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345565554 445555555444 789999999999999999999999888775542 3456667777766
Q ss_pred hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 362 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
.+ ++.++.++..+|......|++++|...+++++.++|+ ..+|..+|.++...|+.++|++.|++|+.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 64 7777889999999999999999999999999999994 8899999999999999999999999999999998853
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=2.9e-06 Score=81.79 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=107.7
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV-IYK 236 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~ 236 (687)
....+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 34444455555666666666655554 455555666666666666666666666666666655554344444444 566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 005626 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 316 (687)
..|++++|...+.+++...|. .. .........+..+...+++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~----~~----------------------------------~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 142 ELGDYEEALELYEKALELDPE----LN----------------------------------ELAEALLALGALLEALGRY 183 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCC----cc----------------------------------chHHHHHHhhhHHHHhcCH
Confidence 666666666666666554442 00 1122222233334444445
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 317 DMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 317 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
+.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...+.++++...+.+++
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555444 355555555555555555555555555555555544445555555554445555555555555
Q ss_pred HhCCC
Q 005626 396 AANPT 400 (687)
Q Consensus 396 ~~~p~ 400 (687)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 55554
No 158
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.98 E-value=2.4e-06 Score=82.39 Aligned_cols=223 Identities=30% Similarity=0.406 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhchhhhhcC
Q 005626 205 MQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLEG 280 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~l~~~~~~~~ 280 (687)
+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.... .+...+......+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 109 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAE-------ALLNLGLLLEALG 109 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHH-------HHHHHHHHHHHHh
Confidence 4455555555555555554 255556666666666666666666666655 3333322 2333333333344
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
++.+++..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...+++++|+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 5666666666666665555444444444 88899999999999999988766 4566777777778899999999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 357 YQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 357 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+.+++...+. ....+..++..+...+++++|...+.+++...|.....+..++..+...++.+++...+.+++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999 79999999999999999999999999999999997788888888888888899999999999999998
No 159
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=1.1e-07 Score=83.20 Aligned_cols=203 Identities=18% Similarity=0.190 Sum_probs=130.3
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 160 (687)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+ .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence 345677788888888888888889999999999999999999999999999999999999999999987665 5
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
.+.|..++--|++.-|.+-+.+-.+.+|+++---..+-.. ...-+..+|...+.+-.+...+....+...+.. .|+
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---Lgk 212 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGK 212 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhh
Confidence 5566666677888888888888888888876432222111 123355566554433322222222233222222 222
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh
Q 005626 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (687)
..+ ...++++..-..++...-..+..+++-+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221 223444444444444444445555666666666666666666666655543
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.9e-08 Score=97.43 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPH----C-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (687)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (687)
...|..+++.|+|..|...|++++..-.. + ..++++++.++.++++|.+|+..+.++|+++|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 33455555666666666666555543111 0 12444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 431 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 431 (687)
.+++..|.++..+|+++.|+..|++++++.|+|..+...|..+-.+..++.+. .+.|.+.+..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555555555555444444333322 4444444443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.96 E-value=1.9e-09 Score=84.19 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (687)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (687)
.+|+|++|+..++++++.+|. +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 005626 138 SYHKA 142 (687)
Q Consensus 138 ~~~~a 142 (687)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.96 E-value=1e-08 Score=82.70 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (687)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..++++++..|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005626 130 GRLVEAAESYHKALSADPS 148 (687)
Q Consensus 130 g~~~~A~~~~~~al~~~~~ 148 (687)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=3.3e-09 Score=78.27 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666666666666666666666666666667766667777777766776666666653
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.95 E-value=3.5e-08 Score=89.19 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=44.5
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (687)
....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 44556666666666666666666666666554432 3456666666666666666666666666666665554
No 165
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=4e-07 Score=100.00 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=195.3
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 005626 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (687)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 247 (687)
-.+..+-|++.+..+|+..-.|........+.++.++|.+..++|+.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888899999999999999999999999999999999874 3322 33454455555556777888889
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005626 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (687)
Q Consensus 248 ~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (687)
|++|.+.... -.++..|..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|+
T Consensus 1520 FeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9998876543 23566777788888999999999999999999899999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH
Q 005626 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAE 403 (687)
Q Consensus 328 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 403 (687)
+.-|. +.+.....|.+-++.|+.+.+...|+-.+.-+|.-.+.|.-+...-.+.|+.+.+...|++++.+. |....
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99887 788889999999999999999999999999999999999999999999999999999999999874 44444
Q ss_pred HHHHHHHHHH
Q 005626 404 AYNNLGVLYR 413 (687)
Q Consensus 404 ~~~~la~~~~ 413 (687)
.++..=.-|.
T Consensus 1672 fffKkwLeyE 1681 (1710)
T KOG1070|consen 1672 FFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.2e-06 Score=79.67 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
...+..-|.++...+++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+. ....++.+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence 345556677888889999998887763 345666666778888899999999999988876543 4445666666
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (687)
.++. ..+.+.+|.-+|++.-+..+..+..+...+.+...+|++++|...++.++..++++++.+.++..+-...|..
T Consensus 181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 5542 1334666777777766666666666666666666677777776666666666666666666666666666655
Q ss_pred HHHHH-HHHHHHhcCCCCH
Q 005626 351 DKAVE-CYQMALSIKPNFS 368 (687)
Q Consensus 351 ~~A~~-~~~~al~~~p~~~ 368 (687)
.++.. .+.+....+|+++
T Consensus 258 ~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hHHHHHHHHHHHhcCCcch
Confidence 44433 3344444455543
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=2.3e-08 Score=85.23 Aligned_cols=107 Identities=11% Similarity=0.028 Sum_probs=99.7
Q ss_pred cccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
.+....+..+..|..++.+|++++|..+|+-+...+|.+.+.++.+|.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (687)
|.|+...|+.+.|+..|+.++. .|.+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999998 45543
No 168
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=5.6e-08 Score=84.97 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=107.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (687)
.....+..+......++...+...++++++.+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34556777777788999999999999999999988 5788889999999999999999999999987654 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (687)
.++.++...|++++|+..++... +... .+.+...+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~---~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIP---DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc---Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 89999999999999999996621 1111 23346778999999999999999998864
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=3.9e-09 Score=77.84 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 005626 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (687)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (687)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777654
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=1.6e-08 Score=86.23 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..++++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 411 LYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
|+..+|+.++|+.+|+.+++ .|.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 66666666666666666666 34433
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.92 E-value=3.2e-09 Score=82.89 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (687)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666663 344555566666666666666666666 555566666666666666666666666666
Q ss_pred HHHH
Q 005626 425 YEQC 428 (687)
Q Consensus 425 ~~~a 428 (687)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6653
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.5e-08 Score=95.58 Aligned_cols=132 Identities=21% Similarity=0.221 Sum_probs=106.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----C-----------HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCC
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG----N-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (687)
...-..|+.+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+..+.++|..+|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34556799999999999999999998874221 1 24789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
+|..+++..|.++...|+++.|+..|++++++.|+|..+...+..+.... ....+...+.|..++..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~------~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI------REYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988754443332221 12233445666666654
No 173
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.2e-06 Score=89.31 Aligned_cols=311 Identities=18% Similarity=0.173 Sum_probs=186.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHH--------HHH---hCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 005626 50 DALSYANILRSRNKFVDALALYEI--------VLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~--------~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (687)
.|-.+|....+..+.+-|.-++-. ++. .+|+ +.-...|....++|..++|+.+|++.-+.
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 345567777766666665544422 122 2333 33344566777889999999999887543
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH----------HhhCC
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKIDP 188 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~p 188 (687)
-.+-..|...|.+++|.+..+.--++. +-..|++.+..+...++.+.|+++|+++ +..+|
T Consensus 830 -DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 830 -DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred -HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 345567788888888887765432222 2233677777777888888888888764 22233
Q ss_pred C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHHH
Q 005626 189 H----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIYKN 237 (687)
Q Consensus 189 ~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~la~~~~~ 237 (687)
. +...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|..
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 2 355667778888889999999999888743 234566788999999999
Q ss_pred cCCHHHHHHHHHHHHhc------CCCcH--HHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005626 238 RGDLESAIACYERCLAV------SPNFE--IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (687)
Q Consensus 238 ~g~~~~A~~~~~~al~~------~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 309 (687)
.|+..+|+..|.++-.. ...+. +-..+++.. . ...+.-.|..+|++.- .-...-..+
T Consensus 980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~--s------~~~d~v~aArYyEe~g-------~~~~~AVmL 1044 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM--S------GGSDLVSAARYYEELG-------GYAHKAVML 1044 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh--c------CchhHHHHHHHHHHcc-------hhhhHHHHH
Confidence 99999999998876433 22211 111111110 0 0122333333333211 001111233
Q ss_pred HHhcCCHHHHHHHHHH-----HH-----hhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhcC--------
Q 005626 310 YGEMLKFDMAIVFYEL-----AF-----HFNP-HCAEACNNLGVIYKDRDNLDKAVECYQ------MALSIK-------- 364 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~-----al-----~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~-------- 364 (687)
|.+.|.+.+|+++.=+ ++ .+++ .++..+..-+..+....+|++|+..+- .|+.+.
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 4444444444443211 11 1233 346777777777777778887776543 333331
Q ss_pred --------CC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 365 --------PN---------FSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 365 --------p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (687)
|. -..++..+|.++.++|.|..|-+-|.+|
T Consensus 1125 ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1237888999999999998888777665
No 174
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.89 E-value=1.4e-06 Score=79.97 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=136.3
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH---H
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (687)
....+..++..|...++.|+|++|+..|+++....|.+ ..+.+.++.++++.+++++|+...++.+++.|.++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 34578899999999999999999999999999988875 47899999999999999999999999999988764 4
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005626 118 AHTHCGILYKDEG--------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (687)
Q Consensus 118 ~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (687)
+++..|.+++..= -..+|+..++..+...|++.-+...... +..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~------------------i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR------------------IVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH------------------HHHHHHHH-----
Confidence 6777787766432 2456888889999999986543211111 11111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (687)
..--..+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 2223456677777777777777777777765543 4566666777777777777766544333334444
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=98.89 E-value=1.8e-07 Score=93.09 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=106.1
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHhchhh--hhcCCHHHHHHHHHHHHHhCCCCH
Q 005626 229 CNMGVIYKNRG---DLESAIACYERCL---AVSPNFEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKKALYYNWHYA 300 (687)
Q Consensus 229 ~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~A~~~~~~al~~~p~~~ 300 (687)
+..|......+ ..+.|+.+|.+++ .++|+...++..++.++......- .......+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 56666665544 3567888999999 899998888888887776542110 134455666666777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 379 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 379 (687)
.++..+|.++...++++.|+..|++++.++|+.+.+++..|.+....|+.++|++.++++++++|.-..+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 77777777666666677777777777777777777777677666666777777777777666666654432222222 23
Q ss_pred HcCCHHHHHHHHHH
Q 005626 380 VQGKMDAAAEMIEK 393 (687)
Q Consensus 380 ~~g~~~~A~~~~~~ 393 (687)
-....++|+..|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 33445555555544
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.3e-06 Score=79.45 Aligned_cols=256 Identities=16% Similarity=0.099 Sum_probs=179.2
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (687)
-++..|+|..++..-++.-... ...+....+.+.|..+|++...+......- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 3455688888887776654433 667778888889999998876655443322 222344555566555556655555
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005626 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (687)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 325 (687)
.-+.+.+........ ......-+.++...+++++|+...... ...++...-..++.++.+++-|.+.+++
T Consensus 93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444332222111 112223345566678999999887763 2456666667788889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005626 326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (687)
Q Consensus 326 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (687)
+.+++.+. .+..||..+.+ .+++.+|.-+|++.-+..|..+..+..++.|...+|++++|...++.++..++++
T Consensus 163 mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 98876543 34445544443 3478899999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCChh
Q 005626 402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 437 (687)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 437 (687)
++++.++..+-...|...++.+ ...+....+|+++-
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999999998766654 44555566777653
No 177
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=3e-05 Score=76.58 Aligned_cols=348 Identities=12% Similarity=0.044 Sum_probs=199.7
Q ss_pred HHHHHhHHHHHHHhC--ChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKD-EGRLVEAAESYHKALSADPSYKPAAEC 155 (687)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (687)
+.++..+|..+...| +...++++++..+...|.+ +.....+|.+++. ..+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356788888888888 8999999999999887764 4567778876654 889999999999998775544444344
Q ss_pred HHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 005626 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (687)
Q Consensus 156 la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~ 226 (687)
.-.....++.++.... .+..+...+++++++....+ ...+.++.+..-..++..|++.+.-..+.... ...
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4445666777777666 88999999999999977654 45667889999999999998875432221111 011
Q ss_pred HHHHH--HHHHHHcCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc----------------------------
Q 005626 227 AYCNM--GVIYKNRGDLE---SAIACYERCLAVSPNFEIAKNNMAIALTDLG---------------------------- 273 (687)
Q Consensus 227 ~~~~l--a~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~---------------------------- 273 (687)
..+.+ +.++....+.. .+.....+..+....++.....+-..|..+.
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 11111 12222222222 2222222222221111111111111111100
Q ss_pred ------------------------------------hhhhhcCCHHHHHHHHHHHHHhCCC------CH--------HHH
Q 005626 274 ------------------------------------TKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (687)
Q Consensus 274 ------------------------------------~~~~~~~~~~~A~~~~~~al~~~p~------~~--------~~~ 303 (687)
.--...|-+++|.++-++++....+ .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 0011234455555555555533111 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHH
Q 005626 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS 370 (687)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 370 (687)
-.+..+-.-.|++.+|++....+.+. .|. .+.....+|.....-+.++.|...|..|.++.... .-+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455555667777776666655543 222 24455566666666667777777777776653321 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
..++|..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 45667777776654443333332 33332 3456666777777778888888777777765
No 178
>PRK11906 transcriptional regulator; Provisional
Probab=98.89 E-value=1.7e-07 Score=93.38 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=117.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 005626 304 YNLGVAYGEMLK---FDMAIVFYELAF---HFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFS 368 (687)
Q Consensus 304 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 368 (687)
+..|......+. .+.|+.+|.+++ .++|+...++..++.++... ....+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 444555444433 457788888888 78888888888888887654 245678889999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhh
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~ 448 (687)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|.-..+..-.+..-.|
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876554433333244
Q ss_pred cc
Q 005626 449 IN 450 (687)
Q Consensus 449 ~~ 450 (687)
..
T Consensus 419 ~~ 420 (458)
T PRK11906 419 VP 420 (458)
T ss_pred cC
Confidence 43
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.88 E-value=1.1e-05 Score=77.29 Aligned_cols=271 Identities=17% Similarity=0.062 Sum_probs=157.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
++-..+..|+..+-.|+|++|.+-|+.++. +|+. .--+..+-......|..+.|..+-+++....|.-+.++...-..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 444556678888999999999999998774 3432 12233333344578999999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKP-AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (687)
.+..|+++.|++..+......--... +....+.++... +.... .
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk----------------------------------A~s~l-d 242 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK----------------------------------AMSLL-D 242 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH----------------------------------HHHHh-c
Confidence 89999999999998876543211111 111111111111 11111 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
-+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|.-. ++..|... ..-+.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-------r~gdt 310 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-------RSGDT 310 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-------cCCCc
Confidence 2345566666666666776666666666777777777777777777766666422 11112111 11111
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
++.-++++ ++...+.|++.+.....+..-+..|++..|..--+.+....
T Consensus 311 a~dRlkRa-------------------------------~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 311 ALDRLKRA-------------------------------KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHHHH-------------------------------HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 22211111 12223345555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005626 365 PNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (687)
Q Consensus 365 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 397 (687)
|.. .++..|+.+-... |+-.+...++-++++-
T Consensus 360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 542 3444455554443 7777777777777654
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=6.7e-08 Score=92.27 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=82.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 005626 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (687)
Q Consensus 334 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 406 (687)
....+..|..+ .+.|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45555555554 55678888888888888888877 4688888888888888888888888888877764 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888876543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.86 E-value=1.1e-07 Score=100.29 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=110.1
Q ss_pred HHhCCCCHHH--HHhHHHHHHHhCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 005626 75 LEKDSGNVEA--HIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK 141 (687)
Q Consensus 75 l~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 141 (687)
....|.+..+ ++..|..+...++ ..+|+.+|+++++++|+++.++..++.++.... +...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666554 4556666665544 778999999999999999888888887765432 34566666677
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (687)
Q Consensus 142 al~~--~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (687)
++.+ .+.++.. +..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 4444433 55566667778999999999999999999 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 005626 220 ERPMYAE 226 (687)
Q Consensus 220 ~~p~~~~ 226 (687)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=2e-07 Score=86.24 Aligned_cols=107 Identities=19% Similarity=0.127 Sum_probs=99.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (687)
.++..+..|..++..|+|.+|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44569999999999999999999999999999986 5899999999999999999999999999987764 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (687)
.+|.+...+|+.++|...|+++++..|+...+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999987763
No 183
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.85 E-value=2.2e-09 Score=100.14 Aligned_cols=241 Identities=15% Similarity=0.060 Sum_probs=172.5
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
+...|+-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|+++.++..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 319 (687)
...+|.+.++.++.+.|++.+....++. +. ...++. -+.+..|. +-.|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence 9999999999999999997654433322 11 111110 01111111 1112
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (687)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (687)
.+-..+++.+ -.-|..+...|.++.++.++-+-+.....+...-.+ +..+.+..++++|+....+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 112445556666777777766655554444333333 5666677777888888777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
.........+.+---.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 665555556666666777888888889999998887765443
No 184
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.85 E-value=0.00018 Score=72.35 Aligned_cols=415 Identities=12% Similarity=0.046 Sum_probs=245.9
Q ss_pred ccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (687)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (687)
...+.+++.|..+.+.+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-..+|.+++...-+ .+.|..
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~l 91 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKL 91 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHH
Confidence 34566777777777776666 7888888888888888888888888888888888888888888877754322 333322
Q ss_pred -HHHHHHHcCCHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHhHHH---------HHHcCChHHHHHHHHHHHhhC
Q 005626 122 -CGILYKDEGRLVEAAESYHKA----LSADPSYKPAAECLAIVLTDLGTS---------LKLAGNTQDGIQKYYEALKID 187 (687)
Q Consensus 122 -la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~~~~la~~~~~lg~~---------~~~~g~~~~A~~~~~~al~~~ 187 (687)
+..+-...++...+....-++ +....-+... ..+|...+.. +..+.+.+.-...|++++...
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s----~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS----YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc----chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 223333344444433333333 3322222222 1123332221 222335566667788887654
Q ss_pred CCCHHHHHH------------HH--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----C------HHHHHHHHHHH
Q 005626 188 PHYAPAYYN------------LG--VVYSELMQYDTALGCYEKAALE-------RPM-----Y------AEAYCNMGVIY 235 (687)
Q Consensus 188 p~~~~~~~~------------la--~~~~~~g~~~~A~~~~~~al~~-------~p~-----~------~~~~~~la~~~ 235 (687)
-.+.+-+.+ .| .+-.....|..|...+++.... +|. . .+.|.++...-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 333322111 11 1112234466666666665432 111 0 12233322221
Q ss_pred HHc------CC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC-------HHHHHHHHHHHHHhCC-CC
Q 005626 236 KNR------GD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNW-HY 299 (687)
Q Consensus 236 ~~~------g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~p-~~ 299 (687)
... |. -..-.-.+++++..-+-.++.|+..+..+...++++...|+ .+++..+|++++...- .+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111 11 11233456777777777888888888877777776666665 4566777777765432 23
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 300 ADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (687)
Q Consensus 300 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 375 (687)
...++.++..-...- +++.--..+++++.+...+ .-++..+-..-.+..-.+.|...|.+|-+.......++..-|
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 334444444333333 3677778888888764433 345566666666777788899999998876544434444444
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhhhhHHHHhhhccCC
Q 005626 376 VV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEG 452 (687)
Q Consensus 376 ~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~~~~~~~~~~~ 452 (687)
.+ |...++.+-|...|+-.++..++.+..-......+...++-..|...|++++.- .|+...-.+...+... ..-|
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vG 486 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVG 486 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-Hhcc
Confidence 33 456899999999999999999999998888889999999999999999999987 4444333333332221 1235
Q ss_pred ChHHHHHHHHH
Q 005626 453 HDDKLFEAHRD 463 (687)
Q Consensus 453 ~~~~~~~~~~~ 463 (687)
+.....+.-++
T Consensus 487 dL~si~~lekR 497 (656)
T KOG1914|consen 487 DLNSILKLEKR 497 (656)
T ss_pred cHHHHHHHHHH
Confidence 55444444433
No 185
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.3e-05 Score=79.02 Aligned_cols=262 Identities=14% Similarity=0.100 Sum_probs=182.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCH
Q 005626 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~ 241 (687)
.+...+..-.+.+.....+.+.++...+..++..|++.+|.+.+... +...+. .--.+.++|.++++.|.|
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y 299 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY 299 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH
Confidence 33333444444444445566788888899999999999999887654 222222 223568999999999999
Q ss_pred HHHHHHHHHHHhc---------C--CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005626 242 ESAIACYERCLAV---------S--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (687)
Q Consensus 242 ~~A~~~~~~al~~---------~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 310 (687)
.-+..+|.++++. . |...........++++.|..+...|+.-.|.++|.++....-.++..|..++.+.
T Consensus 300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999951 1 1111222233456788888888899999999999999999999999999999987
Q ss_pred HhcCC-------------------------------------------------HHHHHHHHHHHHhhC-----------
Q 005626 311 GEMLK-------------------------------------------------FDMAIVFYELAFHFN----------- 330 (687)
Q Consensus 311 ~~~g~-------------------------------------------------~~~A~~~~~~al~~~----------- 330 (687)
+...+ .+-|.-+++.++-+-
T Consensus 380 ima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~ 459 (696)
T KOG2471|consen 380 IMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILS 459 (696)
T ss_pred HHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhh
Confidence 53211 133455555554320
Q ss_pred ----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 331 ----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 331 ----------------------------------p-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
| .. ..++.+.+.+-..+|+.-.|+..-.+.++.
T Consensus 460 ~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~- 538 (696)
T KOG2471|consen 460 VAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL- 538 (696)
T ss_pred hhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-
Confidence 1 01 124456677778899999999999998876
Q ss_pred CCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH-----------------------hCCC----------c-----
Q 005626 365 PNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y----- 401 (687)
Q Consensus 365 p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~-----------------------~~p~----------~----- 401 (687)
|+...++..||.+| ..+.+..+|...+.--+- ++|. .
T Consensus 539 ~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar 618 (696)
T KOG2471|consen 539 ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEAR 618 (696)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHh
Confidence 45556666666555 457777787776654210 0110 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
...+++||.++.-+|++++|..++..+..+-+
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23578999999999999999999999998877
No 186
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=3.1e-06 Score=83.32 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=125.0
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHH-hcCCC--------CH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQ--------NA 116 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~--------~~ 116 (687)
...+........+++..+..-+....+.+.....+.+.+++..+..++..|++.+|.+.+...- ...|. .-
T Consensus 204 ~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 204 LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhh
Confidence 3445556667777888888888888888888888899999999999999999999999886542 22232 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC--CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005626 117 CAHTHCGILYKDEGRLVEAAESYHKALSA---------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (687)
..|.++|.++++.|.|.-+..+|.++++. .| ...-....-..++++.|..+...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 35688999999999999999999999961 11 11111112245689999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 005626 186 IDPHYAPAYYNLGVVYSE 203 (687)
Q Consensus 186 ~~p~~~~~~~~la~~~~~ 203 (687)
....++..|..++.+...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998764
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.79 E-value=2.2e-07 Score=93.28 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
.+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3445566678899999999998888765 6667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
+.|+...+++++..|++...|+.|+.+|..+|++++|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999766643
No 188
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.76 E-value=4.6e-05 Score=81.05 Aligned_cols=287 Identities=12% Similarity=0.015 Sum_probs=195.0
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005626 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (687)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~ 172 (687)
...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++... +..+-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999999998887776666665444 5566777888899
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH---------H
Q 005626 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDL---------E 242 (687)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~---------~ 242 (687)
.++|..+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|+.+..+.....+..+ .... .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 88888888999999988887776666677788876655444444433 2222 3
Q ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHH-HHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Q 005626 243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK-ALYY-NWHYADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 243 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~g~~~~A 319 (687)
-|...+++.++.. +-...+- +..|. .+...++.+++|.+.+.. ..+. .+.+..........+...+++.+-
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE---~~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAE---IILYL---LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHhccCCccchHHH---HHHHH---HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 4556666666655 2111111 11111 233447889999999843 3333 344455555667788889999999
Q ss_pred HHHHHHHHhhCCCCHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHH
Q 005626 320 IVFYELAFHFNPHCAEACNN-------------LGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMD 385 (687)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~ 385 (687)
.+...+++...+++...+.. .+..+...+..+..++..++.+..+...+. ++..+-.-+...|+.+
T Consensus 246 ~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 246 FELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChH
Confidence 99999999999887322222 111122233444455555555544333332 3333333344678888
Q ss_pred HHHHHHHH
Q 005626 386 AAAEMIEK 393 (687)
Q Consensus 386 ~A~~~~~~ 393 (687)
++.-.|-+
T Consensus 326 e~~~~y~~ 333 (932)
T KOG2053|consen 326 EMLSYYFK 333 (932)
T ss_pred HHHHHHHH
Confidence 87655544
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.75 E-value=3e-07 Score=76.78 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=97.1
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH---HH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (687)
......++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3567889999999999999999999999999988864 57899999999999999999999999999999875 57
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 005626 119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (687)
Q Consensus 119 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 152 (687)
++..|.++..+.. ..+|...|+++++..|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899999888876 889999999999999997654
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=9.7e-08 Score=82.51 Aligned_cols=105 Identities=27% Similarity=0.314 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
+-.-|.-++..|+|++|..-|..|+.+.|..+. .+.+.|.++.+++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 344577778888999999999999998887643 778889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
|.++.++++|++-|++.++.+|....++..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998877654
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.74 E-value=3.3e-07 Score=75.44 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 375 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 375 (687)
+.+.+|.++-..|+.++|+.+|++++....+. ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34455555555555555555555555543222 345555555555555555555555555555454 444445555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005626 376 VVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al 395 (687)
.++...|+.++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554444
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.74 E-value=2.8e-07 Score=92.54 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=107.1
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|++.
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988865 6677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (687)
.++++++.|++...|..|+.+|...|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999887754
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=4.3e-08 Score=73.10 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=54.6
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
++..|++++|+..|++++..+|++.++++.+|.+++..|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567888888888888888888888888888888888888888888888888888888777766654
No 194
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.72 E-value=5.2e-06 Score=76.23 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=126.5
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
.+..++..|...++.|++++|+..|+.+...+|.. ..+...++..+++.+++++|+...++.+.+.|.++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 46789999999999999999999999999998865 56889999999999999999999999999999988763
Q ss_pred HHHHHhHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005626 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (687)
Q Consensus 158 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (687)
-+++..|.++... .-..+|+..++..++..|++.-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3355555544322 22356666777777777775332211111 1111111 122335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhch
Q 005626 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (687)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~l~~ 274 (687)
.+|..|.+.|.+..|+.-++.+++..|+.. +++..+..+|..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999987754 455556667777764
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.1e-07 Score=79.48 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
+.+-..|+.++.+|+|.+|..-|..+|...|... ..+.+.|.++++++.++.|+..+.++++++|.+..++...+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3444568889999999999999999999988743 46788999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (687)
.+|.++..+++|+..|+++++.+|....+...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999997665443
No 196
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00054 Score=69.03 Aligned_cols=376 Identities=10% Similarity=0.022 Sum_probs=228.5
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH-hHHHHHHHhCChHHHHHHHHHHHh----c---CCCC
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHI-GKGICLQMQNMGRLAFDSFSEAVK----L---DPQN 115 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~----~---~p~~ 115 (687)
-+..+..|.......+..++|+....+|.++|...=+ .+.|. .+..+....++...+....-++.. . ++..
T Consensus 49 FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s 127 (656)
T KOG1914|consen 49 FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS 127 (656)
T ss_pred CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc
Confidence 3456788888999999999999999999999975432 44443 334444455555555544444433 2 4555
Q ss_pred HHHHHHHHHHHHH---cCCHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHH------------
Q 005626 116 ACAHTHCGILYKD---EGRLVEAA--ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ------------ 178 (687)
Q Consensus 116 ~~~~~~la~~~~~---~g~~~~A~--~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~------------ 178 (687)
...|...+..+.. .|.+++-. ...++..+..-..+- ..+..+|.. -..+++.+.
T Consensus 128 ~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm--~nlEkLW~D-------Y~~fE~~IN~~tarK~i~e~s 198 (656)
T KOG1914|consen 128 YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM--HNLEKLWKD-------YEAFEQEINIITARKFIGERS 198 (656)
T ss_pred chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc--ccHHHHHHH-------HHHHHHHHHHHHHHHHHHhhC
Confidence 5566666555442 45555432 223333222111110 111222222 223333322
Q ss_pred --------HHHHHHhh-------CCC-----------CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCC
Q 005626 179 --------KYYEALKI-------DPH-----------YAPAYYNLGVVYSELMQ--------YDTALGCYEKAALERPMY 224 (687)
Q Consensus 179 --------~~~~al~~-------~p~-----------~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~ 224 (687)
.+++...+ +|. ..+.|.++...-...+- -..-.-.+++++..-+-.
T Consensus 199 ~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~ 278 (656)
T KOG1914|consen 199 PEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH 278 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 22222211 111 01223332222111110 012223456666666777
Q ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhc---CCHHHHHH
Q 005626 225 AEAYCNMGVIYKNRGD--------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE---GDINQGVA 287 (687)
Q Consensus 225 ~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~A~~ 287 (687)
++.|+..+..+...++ .+++..+|++++...-.. ....++.++...... ...+..-.
T Consensus 279 peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~~~ 352 (656)
T KOG1914|consen 279 PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKVHE 352 (656)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhhHH
Confidence 8888877766666665 678888888887643221 122233333222222 23677778
Q ss_pred HHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCC
Q 005626 288 YYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 288 ~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p 365 (687)
++++++.....++ -++..+-..-.+..-...|...|.++-+.......++..-|.+ |...++.+-|...|+-.++..+
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~ 432 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFG 432 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC
Confidence 8888887654443 3566666666777778899999999887654444444444433 4567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
+.+..-......+...++-..|...|++++.. .++ ..++|..+-..-..-|+...+++.=++-....|.+
T Consensus 433 d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 433 DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999987 333 34678777777788899998888888777777743
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.69 E-value=5.4e-07 Score=74.23 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 408 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 408 (687)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999975544 568999999999999999999999999999898 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 005626 409 GVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~ 430 (687)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.67 E-value=5.3e-07 Score=83.51 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 005626 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (687)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (687)
.++.|.-+++.|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777788888899999999999999988876 6689999999999999999999999999887765 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
+..++|+.++|...|+++++..|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998776544
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=1e-07 Score=70.99 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
.|++++|++.|++++..+|++..++..+|.++...|++++|...+++++..+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 34444444444444444444444444444444444444444444444444444433333
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.63 E-value=1.7e-07 Score=93.14 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
+|+++..++++|.+|..+|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666666666533 666666666666666666666666654
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.61 E-value=6.6e-06 Score=70.63 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
+.+....-..+.++..|. ..-.+.+|..+.+.|++.+|...|++++. +.-+++..+..++...+..+++.+|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 334444444444555554 34467899999999999999999999986 4677889999999999999999999999999
Q ss_pred HHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 360 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
..+.+|. .++....+|.++...|++.+|...|+.++...|+ +++....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999876 4778888999999999999999999999999887 77778888999999998888877766543
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.59 E-value=0.00091 Score=66.05 Aligned_cols=373 Identities=14% Similarity=0.048 Sum_probs=210.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
+..+|..+..++++.+|.+.|.++.+...+.+ +.+.++-...+-+++.+.-...+...-+..|..+......|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44578899999999999999999988655543 4455555556667788888777777778889888888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHcCChHHHHHHHHHHHhhC-C----CCHH
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP 192 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~la~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~-p----~~~~ 192 (687)
.++.+++.+|++.+......-.+.... .......+ ...+.++...|.+.++...+++.+..- + -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 999999999999987776542222111 11111111 235678889999999999999887652 2 1333
Q ss_pred HHH----HHHHHHHH----cCCHHHHHHHHHHH-------HHh--------CCCC---------------------HHHH
Q 005626 193 AYY----NLGVVYSE----LMQYDTALGCYEKA-------ALE--------RPMY---------------------AEAY 228 (687)
Q Consensus 193 ~~~----~la~~~~~----~g~~~~A~~~~~~a-------l~~--------~p~~---------------------~~~~ 228 (687)
.+. .+|+.|.- ....+-+..+|+.+ -.. -|.. ..++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 333 34444431 12222222222222 111 1110 0011
Q ss_pred HHHHHHH--------------HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHH
Q 005626 229 CNMGVIY--------------KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (687)
Q Consensus 229 ~~la~~~--------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 294 (687)
.+-.+.| .-..+.+++....+..... ........+...+..+-....++++..+|.+++.-...
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1110000 0011233333333322221 11122222333333333334456667777777666655
Q ss_pred hCCCCHH-----------------------------------------------HHHHHHHHHHhcCC-HHHHHHHHHHH
Q 005626 295 YNWHYAD-----------------------------------------------AMYNLGVAYGEMLK-FDMAIVFYELA 326 (687)
Q Consensus 295 ~~p~~~~-----------------------------------------------~~~~la~~~~~~g~-~~~A~~~~~~a 326 (687)
.+|.... -+..-|.-+.+.|. -++|+..++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5554321 12223333444554 66677777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhc---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHH
Q 005626 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNL--GVVYTVQGKMDAAAEM 390 (687)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~ 390 (687)
++..+.+.+..+..-.. -...|.+|+. .+-+.+.+ .| .+.+.-+.| |..++..|++.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77666655333221111 1112222221 11111111 11 223333444 3446778999999988
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
-.=..++.| ++.++..+|.++....+|++|..++...
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888888999 7999999999999999999999988753
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.57 E-value=3.7e-07 Score=69.10 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=50.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
..+++..++|++|++.+++++..+|+++..+..+|.++...|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777666554443
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.56 E-value=4.3e-07 Score=68.75 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=32.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|.+.++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344445555555555555555555555555555555555555555555555555555544443
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2e-05 Score=70.40 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=72.9
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------H
Q 005626 338 NNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------E 403 (687)
Q Consensus 338 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~ 403 (687)
..+|.+|... .++++|+.+|+++-+..... -..+...+..-...++|.+|+..|++.....-++. .
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3455555543 66777777777776653322 22455566666777888888888888776654442 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 005626 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~ 444 (687)
-++.-|.|+.-..+.-.+...+++..+++|...+.+...++
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 44556777777788888899999999999998877665443
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.51 E-value=4.8e-06 Score=69.62 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ---SLNNL 374 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l 374 (687)
..++.-|...++.|+|++|++.|+.+....|.. ..+...++.+|++.+++++|+..+++.++++|.++. +++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 445555555555555555555555555544332 344455555555555555555555555555544432 34444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
|.++..+.. ..+.... ..-...+...+|...|++.++..|++.-+.
T Consensus 91 gL~~~~~~~-----~~~~~~~--------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 91 GLSYYEQDE-----GSLQSFF--------------RSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHhh-----hHHhhhc--------------ccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 444433322 0000000 111112226688888899998888876543
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.49 E-value=2.7e-06 Score=68.22 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHH
Q 005626 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR 413 (687)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 413 (687)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888888888888888888888888888888888875443 356778888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 005626 414 DAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~ 435 (687)
.+|+.+.|..-|+.+-++-...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8888888888888888776543
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00016 Score=65.89 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP-------------MY------AEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
...|...-.++.++...++|..-+...-+.+. +. .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 44555556666677777777666655443321 11 123344566667777777776665554
Q ss_pred HhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 005626 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN- 330 (687)
Q Consensus 252 l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 330 (687)
...-.+ +-.........+..+..+++-+ ..+.+.+..++.-.|+|.-....+.+.++.+
T Consensus 149 ~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 332111 1111111223355666666654 3567788888889999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 005626 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (687)
|..+.....+|.+.++.|+.+.|..++++.-+.. .....+..+.+.++.-.+++.+|...+.+.+..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 6678888899999999999999999998554332 2234477788888899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
..+.|.|+.-.|+...|++..+.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999754
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00023 Score=64.95 Aligned_cols=231 Identities=14% Similarity=0.129 Sum_probs=143.6
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------------A-CAHTHCGILYKDEGRLVEAAESYHK 141 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (687)
....|...-.++.++...++|...+...-+++..+ + ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44667777777888888888888777665543211 1 1223345566667777777666555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (687)
Q Consensus 142 al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (687)
....- ...-.........+..+..+++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 148 L~~~V--------------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVV--------------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH--------------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 43311 111111222233356666666654 3467788889999999999999999999988
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 005626 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (687)
Q Consensus 222 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 300 (687)
|..+.....+|.+.++.|+.+.|..+|++.-+......... ...
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q-----------------------------------~~~ 252 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ-----------------------------------GKI 252 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc-----------------------------------hhH
Confidence 66788899999999999999999999997654322111000 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (687)
.+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.|++-.|+..+|++.++.+++..|.
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 233344444555555555555555555555555555555555555566666666666666555554
No 210
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.5e-05 Score=69.75 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=91.1
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HH
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPMY------AE 226 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~ 226 (687)
|...+.+|.+ .+.++|+.++++++++..+. +..+..+|.+|..- .++++|+.+|+++-+..... -.
T Consensus 77 YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 4444444333 36677777777776664332 23345778888765 88999999999997754322 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 005626 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (687)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 300 (687)
.+...+..-...++|.+|+..|++.....-++....+..-..+..-|.++....+.-.+...+++-.+.+|...
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 56677778888999999999999998877666655444444444555555555555555556666666666543
No 211
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.45 E-value=2.7e-05 Score=78.53 Aligned_cols=104 Identities=26% Similarity=0.351 Sum_probs=92.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005626 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (687)
Q Consensus 341 a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (687)
|......|+...|+.++..|+...|.... ...+|+.++...|-..+|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33445679999999999999999887644 68899999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHH
Q 005626 420 LAIDAYEQCLKIDPDSRNAGQNRLL 444 (687)
Q Consensus 420 ~A~~~~~~al~~~p~~~~a~~~~~~ 444 (687)
.|++.|++|++++|+++.....++.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999877665543
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.44 E-value=2.6e-06 Score=84.99 Aligned_cols=81 Identities=30% Similarity=0.341 Sum_probs=69.5
Q ss_pred CCCCCCcccccccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHhHHHHHHHhCChHHHHHHHHH
Q 005626 31 GTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSE 107 (687)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~ 107 (687)
++++++....+...+..++.++.+|..++..|+|++|+..|+++++.+|++.++ ++++|.+|..+|++++|+.++++
T Consensus 58 ~~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 58 SPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444444555677889999999999999999999999999999999999855 99999999999999999999999
Q ss_pred HHhc
Q 005626 108 AVKL 111 (687)
Q Consensus 108 al~~ 111 (687)
++++
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 9987
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.44 E-value=7.3e-05 Score=64.38 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=101.8
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCCh
Q 005626 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (687)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~lg~~~~~~g~~ 173 (687)
.=+.+.......+.+...|... -.+.+|..+.+.|++.+|...|++++.- ...+... +..++...+..+++
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~-------lLglA~Aqfa~~~~ 140 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM-------LLGLAQAQFAIQEF 140 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH-------HHHHHHHHHhhccH
Confidence 3344555555555555555432 3566777778888888888888877753 2333332 55566666667788
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 174 QDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 174 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
..|...+++..+.+|. .++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+...
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8888888887777665 4667777788888888888888888888887776 566667777788888777776655554
Q ss_pred Hh
Q 005626 252 LA 253 (687)
Q Consensus 252 l~ 253 (687)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.44 E-value=1.3e-05 Score=64.40 Aligned_cols=98 Identities=22% Similarity=0.269 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHH
Q 005626 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVY 378 (687)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 378 (687)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++.... -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44556777788888888888888888888888888888888888888888888888888885443 23677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 005626 379 TVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~ 400 (687)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 8888888888888888776544
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=5.4e-07 Score=69.21 Aligned_cols=64 Identities=36% Similarity=0.540 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---N----PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
..++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555666666666666666666666544 1 112446667777777777777777777777654
No 216
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.35 E-value=4.1e-06 Score=72.24 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
|+.|.+.++.....+|.+++.+++-|.++..+.++ .++.+ -+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 55666666666666666666666666666554322 11111 1234444455
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 005626 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (687)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~~~~ 444 (687)
+++.++|+..++++.+|.+|..++ .+++|.++|++|...+|++...+..+-+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 555555555555555555554443 3778999999999999999877666443
No 217
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.35 E-value=0.0013 Score=68.44 Aligned_cols=344 Identities=14% Similarity=0.101 Sum_probs=174.4
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHh------------c--------CCCCHH
Q 005626 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK------------L--------DPQNAC 117 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------~--------~p~~~~ 117 (687)
.+..|+|+.|...++. ++..|+....|..++...+..|+.--|..+|...-. + ..+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 4677999999988776 677788778888888888888877766666643211 1 111122
Q ss_pred HHHHHH-------------HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHH----------hHHH
Q 005626 118 AHTHCG-------------ILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTD----------LGTS 166 (687)
Q Consensus 118 ~~~~la-------------~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~----------lg~~ 166 (687)
.|...+ .++..++..++|+-.|+..-+- ....+. +..+-..|+. .|..
T Consensus 533 fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~-~eklk~sy~q~l~dt~qd~ka~el 611 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPA-LEKLKRSYLQALMDTGQDEKAAEL 611 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChH-HHHHHHHHHHHHHhcCchhhhhhh
Confidence 222222 2345566666666666543221 111111 1111111111 1112
Q ss_pred HHHcCChHHHHHHHHHHHh------h-------CCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Q 005626 167 LKLAGNTQDGIQKYYEALK------I-------DPH------------YAPAYYNLGVVYSELMQYDTALGCYEKA---- 217 (687)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~------~-------~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a---- 217 (687)
....|+--.|++.|-++-. . ..+ ..+.|-.-|.++.+..++++|+++|++.
T Consensus 612 k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~ 691 (1636)
T KOG3616|consen 612 KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFG 691 (1636)
T ss_pred ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHH
Confidence 2223333444444433210 0 000 0223334455556666666666666542
Q ss_pred --HHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHH
Q 005626 218 --ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (687)
Q Consensus 218 --l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~ 290 (687)
+++ .|.. ...-...|.-+...|+++.|+..|-++-.+ ...-......+.+.+|+.+++
T Consensus 692 kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~---------------~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 692 KAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL---------------IKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH---------------HHHHHHHhhhhhhhhhHhHHH
Confidence 222 1211 122233455566667777777666554211 111111112345566665555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HH
Q 005626 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQ 369 (687)
Q Consensus 291 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~ 369 (687)
....... ....|-.++.-|...|+|+.|.++|.++- ........|-+.|++++|.+.-+++.. |+. ..
T Consensus 757 niqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~ 825 (1636)
T KOG3616|consen 757 NIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATIS 825 (1636)
T ss_pred Hhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHH
Confidence 4432211 12345566777777888888877776642 222334456666777777666655532 222 23
Q ss_pred HHHHHHHHHHHcCCHHHHH-------------HHHHHH------HH----hCCCc-HHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 370 SLNNLGVVYTVQGKMDAAA-------------EMIEKA------IA----ANPTY-AEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~-------------~~~~~a------l~----~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
.|...+.-+.+.|++.+|. ..|++. +. ..|+. .+.+..+|.-|...|+..+|...|
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 4444454455555554444 333331 11 12322 456778888999999999988887
Q ss_pred HHHH
Q 005626 426 EQCL 429 (687)
Q Consensus 426 ~~al 429 (687)
-++-
T Consensus 906 lea~ 909 (1636)
T KOG3616|consen 906 LEAG 909 (1636)
T ss_pred Hhhh
Confidence 7664
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=8.9e-05 Score=66.79 Aligned_cols=199 Identities=22% Similarity=0.190 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005626 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (687)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 307 (687)
+..-+..|...+++++|...+.++.+-..++. .++.-+..+-..+.+......+.++..+++++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 33444555556666666666666655444332 233334444444444444555666666666654
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc
Q 005626 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (687)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 381 (687)
..|.+.|..+-|-..++++-+. .+..+.++|+++|++++.+-... .+.+...+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 3344555555554444444332 22345556666666655542221 22444556666666
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhhhhHHHHhhhccC
Q 005626 382 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 451 (687)
Q Consensus 382 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~~~~~~~~~~~ 451 (687)
.++++|-..+.+-... .++....+.....+|....++..|..+|+..-++ .|++..+..+++- ....
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---Hhcc
Confidence 7777766666554332 2233344445555556666777777777776554 3444444444432 2355
Q ss_pred CChHHHHH
Q 005626 452 GHDDKLFE 459 (687)
Q Consensus 452 ~~~~~~~~ 459 (687)
++.++...
T Consensus 241 gD~E~~~k 248 (308)
T KOG1585|consen 241 GDIEEIKK 248 (308)
T ss_pred CCHHHHHH
Confidence 55555443
No 219
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.6e-06 Score=77.45 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=95.3
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
...+.+-+.|+.++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 005626 126 YKDEGRLVEAAESYHKALSA 145 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~ 145 (687)
......+++|+..+.++..+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 99999999999999999665
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00021 Score=64.51 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Q 005626 281 DINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g 348 (687)
++++|+++|++++.....+ .+.+...++++.+..++++|-..+.+-... .++....+.....+++...
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~ 204 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH 204 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH
Confidence 5666666666665543222 123444455555555665555554443221 1222233333333344444
Q ss_pred CHHHHHHHHHHHHhc
Q 005626 349 NLDKAVECYQMALSI 363 (687)
Q Consensus 349 ~~~~A~~~~~~al~~ 363 (687)
+|..|..+++...++
T Consensus 205 Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 205 DYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHhcchhcC
Confidence 555555555554443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.30 E-value=1.3e-06 Score=67.12 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
|+-..++..+|.+|..+|++++|+.+|++++++..........++.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34456889999999999999999999999998733333334445777888888888888888888888888764
No 222
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.28 E-value=0.00068 Score=70.48 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
++++..++..+...|++++|-+.|-.+++++.
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 44555556666666666666666666665543
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.25 E-value=0.0017 Score=68.37 Aligned_cols=154 Identities=16% Similarity=0.081 Sum_probs=116.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH-HH------HHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 278 LEGDINQGVAYYKKALYYNWHYA-DA------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~~~-~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
-.|+-+.++..+.++.+...-.. -+ |+....... .....+.|.+.++...+..|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 36899999999998876322111 11 111111111 24567889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH---
Q 005626 347 RDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI--- 418 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~--- 418 (687)
.|+.++|++.|++++.....- .-.++.+++++..+.+|++|..++.+..+.+.-. +-..+..|.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988644332 3378889999999999999999999999876654 33456778889999998
Q ss_pred ----HHHHHHHHHHHhc
Q 005626 419 ----SLAIDAYEQCLKI 431 (687)
Q Consensus 419 ----~~A~~~~~~al~~ 431 (687)
++|.++|+++-.+
T Consensus 360 ~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 7777777766443
No 224
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.24 E-value=0.0094 Score=61.61 Aligned_cols=344 Identities=9% Similarity=-0.056 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY-KDEGRLVEAAESYHKA 142 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 142 (687)
.+.+...|...+...|.-...|...|..-.+.|..+.+.+.|++++.--|-....|..+-... ...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 366667788888888988888999999999999999999999999998888777776654433 3467777777888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 005626 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEK 216 (687)
Q Consensus 143 l~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~ 216 (687)
......+... ...+-..-.....++++..-...|++.++..-.....++..=.-+.+. ...+++.+.-..
T Consensus 141 ~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 8776554332 111333333345677888888888888775333332222221111111 112222221111
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh
Q 005626 217 AALERPMYAEAYCNMGVIYKNRGDLESAIA-CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (687)
.... ......+...+-.+ .........+........+.......-.++.......+.+..++..+..
T Consensus 217 ~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 217 VAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred HHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1110 00000001111111 1111111111111111111222222222233333444555555555533
Q ss_pred -----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 005626 296 -----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPN 366 (687)
Q Consensus 296 -----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~ 366 (687)
.|. ....|..........|+++.....|++++--.....+.|...+......|+.+-|...+.++.++ .|.
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 222 23567777788889999999999999999988888999999999999999999999999988887 466
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (687)
.+.+...-+.+-...|++..|...+++..+..|+..++-.........+|+.+.+..
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 778888888888889999999999999999889998888888888999999998884
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.21 E-value=1.5e-05 Score=68.77 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhh---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 005626 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 317 (687)
++.|.+.++.....+|.+.+.+.+-+.++..++.... ....+++|+.-|++++.++|+..++++.+|.++...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4555555555566666666666665666555554422 2235677888888888899998888888888887655311
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (687)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (687)
|+.. .....|++|..+|++|...+|++......|..+
T Consensus 87 -------------~d~~----------~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 -------------PDTA----------EAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---------------HH----------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -------------CChH----------HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1100 001224566666666666666665555554443
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.20 E-value=0.0012 Score=69.48 Aligned_cols=165 Identities=13% Similarity=-0.018 Sum_probs=123.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc---hhhh--hcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005626 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG---TKVK--LEGDINQGVAYYKKALYYNWHYADAMYNL 306 (687)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~---~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l 306 (687)
-.+.--.|+-+.+++.+.++.+ .++-......+....+... -+-. .....+.|.+.++...+..|+..-.++..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~ 273 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE 273 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3344456899999999999877 3332222222222111111 1111 35678999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHc
Q 005626 307 GVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQ 381 (687)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 381 (687)
|+++...|+.++|++.|++++..... ..-.++.++.++.-+.+|++|..++.+..+.+.-. .-..+..|.|+...
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 99999999999999999998854322 24567899999999999999999999999875543 34567788899999
Q ss_pred CCH-------HHHHHHHHHHHHh
Q 005626 382 GKM-------DAAAEMIEKAIAA 397 (687)
Q Consensus 382 g~~-------~~A~~~~~~al~~ 397 (687)
++. ++|.+++.++-..
T Consensus 354 ~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccchhhhhhHHHHHHHHHHHHHH
Confidence 999 7777777776554
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.17 E-value=0.005 Score=60.27 Aligned_cols=131 Identities=21% Similarity=0.089 Sum_probs=104.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhh----CCC----------
Q 005626 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH---------- 189 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p~---------- 189 (687)
....|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++++. .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999997766 6667777889999999999999999 999999999999887 211
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (687)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.++.+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1356778889998887755 455566666667788888886666777778999999999999887644
No 228
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.15 E-value=0.00025 Score=71.87 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
.|..+...|+...|++++..++...|... ....++|.++.+.|-...|-..+.+++.+....+-.++.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34455678999999999999999888653 45778999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (687)
+.|++.|++|++++|+++.+-..|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999888776665544
No 229
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.13 E-value=0.003 Score=64.78 Aligned_cols=293 Identities=14% Similarity=0.075 Sum_probs=153.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcC--------CCCHHHHHHHHH
Q 005626 54 YANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------PQNACAHTHCGI 124 (687)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 124 (687)
.+++..+.|+++. +.+.+...+ +..+..+..+......++++++...++++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566778888888 333333322 234667777777778899999988888876642 111111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChH--HHHHHHHHHHhh----CCCCHHHHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLG 198 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la 198 (687)
.+....+.+++..+....... ......+...+...-... ..+++ +-+-.++..+-. .......+...+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 122233344444433221110 111111111121111000 11111 111111222211 345577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-H--HHHHHHHHHHH
Q 005626 199 VVYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-I--AKNNMAIALTD 271 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~--~~~~l~~~~~~ 271 (687)
.+..+.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+....... . ....+...+
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGL-- 231 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcc--
Confidence 999999999999999999887652 2577888899999999999999999998887221110 0 000000000
Q ss_pred hchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
................ ......++..+|...... +..++++..|.++++.+|....+|..+|..+.
T Consensus 232 ---~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 232 ---LESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred ---ccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000000000000000 000123455555555555 66667777777777777766666666666554
Q ss_pred HcC-----------------CHHHHHHHHHHHHhcCCC
Q 005626 346 DRD-----------------NLDKAVECYQMALSIKPN 366 (687)
Q Consensus 346 ~~g-----------------~~~~A~~~~~~al~~~p~ 366 (687)
..- -...|+..|-+++...++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 321 124588899999988877
No 230
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.11 E-value=0.028 Score=61.90 Aligned_cols=367 Identities=14% Similarity=0.071 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHhHHHHHH-HhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCH
Q 005626 64 FVDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRL 132 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 132 (687)
...|+.+++-+++..+- .+.+.+.+|.+++ ...++++|..++++++.+...+ ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35567888887753222 3467889999987 7889999999999998876432 23455678888888877
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 005626 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ 206 (687)
Q Consensus 133 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~ 206 (687)
. |...+++.++..............-+. ........+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 7 999999998876552222111111111 1222222379999999999988775 344332 3334666677788
Q ss_pred HHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 005626 207 YDTALGCYEKAALERP----------MYAEAYCNMGV--IYKNRGDLESAIACYERC---LAVSPNFE------------ 259 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~~~~~------------ 259 (687)
.+++++.++++..... ....++..+-. +....|++..+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888888744321 12334444433 345567766665554433 32211110
Q ss_pred --------------------HHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC-------C-------------
Q 005626 260 --------------------IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------Y------------- 299 (687)
Q Consensus 260 --------------------~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------~------------- 299 (687)
......+.+|.--|......+..++|.++++++++.-.+ .
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 001112233333344444556665777777776643111 0
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 005626 300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------ 358 (687)
Q Consensus 300 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~------ 358 (687)
.......+....-.+++.+|....+.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 0134556777778899988988888777652 22 36778888999999999999999998
Q ss_pred --HHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC---CcH-----HHHHHHHHHHH--HcCCHHHHH
Q 005626 359 --MALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIA-ANP---TYA-----EAYNNLGVLYR--DAGSISLAI 422 (687)
Q Consensus 359 --~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p---~~~-----~~~~~la~~~~--~~g~~~~A~ 422 (687)
.+....+... -+..++..++...+.-......+.++++ +.| +.. .++..+-.++. ..-...++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 3333333332 2556677777665543332212233332 222 111 11222222221 222345788
Q ss_pred HHHHHHHhcC
Q 005626 423 DAYEQCLKID 432 (687)
Q Consensus 423 ~~~~~al~~~ 432 (687)
..+.++++..
T Consensus 515 ~~l~~~L~~~ 524 (608)
T PF10345_consen 515 RHLQEALKMA 524 (608)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.10 E-value=0.00048 Score=69.16 Aligned_cols=170 Identities=15% Similarity=0.042 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC------------------
Q 005626 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------------------ 114 (687)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------ 114 (687)
......-+..+..+-++.-+++++.+|+.+.++..++.-. .....+|+++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4455557788999999999999999999999998888642 23457777778777764211
Q ss_pred ---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh-
Q 005626 115 ---N----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (687)
Q Consensus 115 ---~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (687)
+ ..+...+|.|..+.|+.++|++.++..++..|.... -.+..++..++...+.+.++...+.+.-+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-----l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-----LNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-----hhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 0 234456677777777777777777777766654211 123555666666667777777766664332
Q ss_pred CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 005626 187 DPHYAPAYYNLGVVYSEL-MQ---------------YDTALGCYEKAALERPMYAEAYC 229 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~~ 229 (687)
-|+.+...+..+.+..+. ++ -..|.+.+.+|++.+|..+..+.
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 244455444444433221 11 12355666777777776555433
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.09 E-value=0.0033 Score=62.51 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCcHHH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERC-LAVSPNFEIA 261 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~~~~~~~ 261 (687)
++++..++-..|....+|+.-+++.+..-.. -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999999887666 45567788889999998 99999999999994 4555667777
Q ss_pred HHHHHHHHHHhchh--hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005626 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (687)
Q Consensus 262 ~~~l~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 315 (687)
+...+.+|..+-.. .......++|+..|.++.+.+|+. ..=.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 77777777665332 122334777888888887777543 223344444555554
No 233
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.08 E-value=9.3e-05 Score=72.38 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466666777777778899999999986666678888888888777 4566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
.|+.+.|...|++++..-+... .+|......-...|+.+......+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866554 5788888888899999999999999999988844
No 234
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.6e-05 Score=67.55 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=95.0
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHhHHHHHHHhCChHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGN----------VEAHIGKGICLQMQNMGRLAFDSFSE 107 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (687)
.....+-+.|+.++..|+|.+|...|..++. ..|.. ...+.+++.|++..|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 3566788899999999999999999998864 24544 34788999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005626 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (687)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (687)
++..+|.+..+++..|......-+.++|...|.++++++|.-...
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999985443
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00033 Score=66.15 Aligned_cols=150 Identities=13% Similarity=-0.038 Sum_probs=97.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV 354 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~ 354 (687)
.|+..+|...+++.++..|.+.-++..--.+++.+|+.+.-...+++++.. +++. ..+.-.++..+.+.|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 456666666777777777776666666666677777777777777777665 4444 344455666667777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
+..++++++++.+.-+...++.++...|+++++.++..+.-..-... ..-|...+.++...+.++.|++.|.+-
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 77777777777777777777777777777777777666543221111 112344566666677777777777653
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0039 Score=59.22 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=134.1
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~ 161 (687)
+-....+.+....|++.+|...+++.++..|.+.-++..--..++.+|+...-...+++++.. +++.+-. ..+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~----sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY----SYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH----HHHHH
Confidence 445556677788999999999999999999999988888888899999999999999999877 6665432 12233
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 237 (687)
.++-.+...|-|++|.+.-++++++++.+..+...++.++...++..++.++..+--..-... ..-|...+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 445566778999999999999999999999999999999999999999999887753321111 2235566888889
Q ss_pred cCCHHHHHHHHHHHH
Q 005626 238 RGDLESAIACYERCL 252 (687)
Q Consensus 238 ~g~~~~A~~~~~~al 252 (687)
.+.|+.|+++|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998755
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.2e-05 Score=68.63 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005626 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386 (687)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 386 (687)
|..++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.++.....+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44455555666777777777777777667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh
Q 005626 387 AAEMIEKAIAA 397 (687)
Q Consensus 387 A~~~~~~al~~ 397 (687)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.00056 Score=68.67 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVL 411 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 411 (687)
.+...+|.+..++|+.++|++.++..++..|. +..++.+|..++..++.+.++...+.+.-++ -|+.+...+.-+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 34456777777777777777777777776654 3457777777777777777777777775433 24555555554443
Q ss_pred HHH-------------cC---CHHHHHHHHHHHHhcCCCChhhh
Q 005626 412 YRD-------------AG---SISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 412 ~~~-------------~g---~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
..+ .| -...|.+...+|++.||.-+...
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 322 11 12457899999999999887654
No 239
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=9.7e-05 Score=66.52 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
....+.|+++|+...|+|-++++.....+...|.+..+++..|.+....=+.++|..-|.++|+++|.-..+...
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999987665544
No 240
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.04 E-value=0.021 Score=61.75 Aligned_cols=298 Identities=17% Similarity=0.082 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC-----CC
Q 005626 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-----HY 190 (687)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~ 190 (687)
.+.+..-+..+...|...+|+...-.+- ++. ..+.++.+.+......++..--.. .++.-| .+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~---~aa~lle~~~~~L~~~~~lsll~~----~~~~lP~~~l~~~ 414 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-----DPE---MAADLLEQLEWQLFNGSELSLLLA----WLKALPAELLAST 414 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHH---HHHHHHHhhhhhhhcccchHHHHH----HHHhCCHHHHhhC
Confidence 5667777777888888888887665431 111 123444445555555555443332 222223 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
+......+.......++.+|..++.++...-+. .....-..|.+....|++++|.+..+.++..-|...
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 556667788888899999999999888665433 134555678888899999999999999998877653
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHh----h
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y--ADAMYNLGVAYGEMLK--FDMAIVFYELAFH----F 329 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~--~~~A~~~~~~al~----~ 329 (687)
+.....++..++....-.|++++|..+.+.+.+.... . ..+....+.++..+|+ +.+....+...-. .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3444566777888888899999999999988876322 2 2244556778888884 3333333333222 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 005626 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK----PNF--SQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY- 401 (687)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 401 (687)
.|.........+.++...-+++.+..-..+.++.. |.. .. +++.|+.++...|++++|...+.+...+.-+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 34433344444444444334666666666666552 222 22 33589999999999999999999887763222
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 402 ------AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 402 ------~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
+.+..-.......+|+.++|.....+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11222223334567898888888777
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.03 E-value=0.0068 Score=62.15 Aligned_cols=138 Identities=13% Similarity=0.175 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC-C----
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N---- 366 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~---- 366 (687)
......+...+.+..+.|+++.|...+.++...++ ..+.+....+.++...|+..+|+..++..++. .. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567888999999999999999999999887652 24778888899999999999999998888771 10 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 367 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 367 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
...++..+|...... +..+++...|+++++.+|+...+++.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 023555666666666 7788888899999998888888888888776
Q ss_pred HHcCCH-----------------HHHHHHHHHHHhcCCC
Q 005626 413 RDAGSI-----------------SLAIDAYEQCLKIDPD 434 (687)
Q Consensus 413 ~~~g~~-----------------~~A~~~~~~al~~~p~ 434 (687)
...=+. ..|+..|-+++...++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 543211 2366666666666665
No 242
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.01 E-value=0.0065 Score=65.65 Aligned_cols=286 Identities=26% Similarity=0.305 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005626 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE-----GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (687)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~ 172 (687)
..+|..+++.+.+. .+..+...+|.++..- .+.+.|+.+++.+.+.
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~--------------------------- 278 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES--------------------------- 278 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------------------------
Confidence 34566666665543 3555666666666543 4667777777666552
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHH
Q 005626 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESA 244 (687)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A 244 (687)
|.++.... .+.+.+.+|.+|.+.. +++.|+.++.++.+.. ++.+.+.+|.++.... +...|
T Consensus 279 -------~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A 347 (552)
T KOG1550|consen 279 -------FKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRA 347 (552)
T ss_pred -------HHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHH
Confidence 00000011 2334444555554421 3444555555554432 2344445555554433 34455
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Q 005626 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFY 323 (687)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~ 323 (687)
.++|..+.+. .+..+...++.++.. | .....+...|..+++++.+.. .+.+...++..+..- +.++.+...+
T Consensus 348 ~~yy~~Aa~~--G~~~A~~~la~~y~~-G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 348 FEYYSLAAKA--GHILAIYRLALCYEL-G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred HHHHHHHHHc--CChHHHHHHHHHHHh-C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 5555555433 222333333333322 1 122345556666666665555 233333333332222 5555554444
Q ss_pred HHHHhhCCCCHH----HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHH
Q 005626 324 ELAFHFNPHCAE----ACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMI 391 (687)
Q Consensus 324 ~~al~~~p~~~~----~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~ 391 (687)
....+..-..+. .+......... ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|
T Consensus 421 ~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y 498 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQY 498 (552)
T ss_pred HHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHH
Confidence 443333211111 11111101111 1245556666665543 45677778888887764 4588888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 005626 392 EKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 435 (687)
.++.... +...+++|.++..- .....|..+|.++.+.+...
T Consensus 499 ~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 499 ARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 8888777 88888899888751 12688888888888766553
No 243
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.037 Score=60.40 Aligned_cols=234 Identities=14% Similarity=0.061 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (687)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (687)
-++.+.|.++.+++ +.+..|..+|.+....|...+|++.|-++ +++..+.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 36677777766665 45677888888888888888888877654 566677777777777888888777777
Q ss_pred HHHhcCCCC-HHH--HHHHHHH-----------------HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 141 KALSADPSY-KPA--AECLAIV-----------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (687)
Q Consensus 141 ~al~~~~~~-~~~--~~~la~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (687)
.+-+...+. .+. ...++.. ....|.-++..+.|+.|.-+|.. ..-+..++..
T Consensus 1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 665432221 111 1111110 22345666667777777666643 3456778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 201 YSELMQYDTALGCYEKAALERP-------------------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
+..+|+|..|....+++-.... -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 8899999999888887732210 024455667778888999999999999998876
Q ss_pred CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC--C------CCHHHHHHHHHHHHhcCCHHHHH
Q 005626 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--W------HYADAMYNLGVAYGEMLKFDMAI 320 (687)
Q Consensus 256 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p------~~~~~~~~la~~~~~~g~~~~A~ 320 (687)
..+-.....++..|... ++++-.++++-....- | +....|..+..+|.+-..|+.|.
T Consensus 1310 RAHMgmfTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 65554555555554432 3444444443222110 1 12234566666666666665553
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=2.1e-05 Score=52.15 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (687)
++..+|.+|..+|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.96 E-value=0.052 Score=59.84 Aligned_cols=410 Identities=15% Similarity=0.053 Sum_probs=241.5
Q ss_pred CchHhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--CH----HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC---C
Q 005626 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (687)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (687)
.++...+++|.+++ ...++++|...+++++..... -. .+.+.++.++.+.+... |+..+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46778899999998 678999999999999876533 22 34556788888887776 99999999986544 2
Q ss_pred -HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--
Q 005626 116 -ACAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-- 188 (687)
Q Consensus 116 -~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 188 (687)
....+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++..+++.....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2222222 2233334799999999999988763 33333 222344445666777888888888887744311
Q ss_pred ----C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---Hh---CC---C---C----------------------
Q 005626 189 ----H----YAPAYYNLGV--VYSELMQYDTALGCYEKAA---LE---RP---M---Y---------------------- 224 (687)
Q Consensus 189 ----~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~p---~---~---------------------- 224 (687)
. ...++..+-. ++...|+++.+...+++.- +. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 1 2334443333 4556777777766655542 21 11 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----------------HHH--HHHHHHHHHhchhhh
Q 005626 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK 277 (687)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~--~~l~~~~~~l~~~~~ 277 (687)
.-++..-|......+..++|.++++++++.-.+.. ..+ .....++...+....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11333445566667777788888888875422111 111 112233444555666
Q ss_pred hcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 005626 278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~~~ 337 (687)
..+++.+|....+.+.... |. .+..++..|..+...|+.+.|+..|. .+....+.+ .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 7889999988888777553 22 36678999999999999999999998 333333333 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHH-----HHHHHHHH--HcCCHHHHHHHHHHHHHhC-C--Cc--
Q 005626 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSL-----NNLGVVYT--VQGKMDAAAEMIEKAIAAN-P--TY-- 401 (687)
Q Consensus 338 ~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~-----~~la~~~~--~~g~~~~A~~~~~~al~~~-p--~~-- 401 (687)
.++..++...+.-.. +.+.+++.-....+.+... ..+-.++. ..-...++...+.++++.. . ++
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566667666554333 3333333222211222222 22222221 1223457777777777664 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhhhhH----HHHhhhccCCChHHHHHH
Q 005626 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFEA 460 (687)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~~----~~~~~~~~~~~~~~~~~~ 460 (687)
.-++..++..+. .|+..+......++....... ....+.. ++...+-..|+.+++-..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 224555666666 788888777777777654443 4333321 222224456666554443
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.92 E-value=0.012 Score=63.67 Aligned_cols=176 Identities=23% Similarity=0.237 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-----CChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG--- 130 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 130 (687)
..+|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888887665 4778888899998765 5899999999999771 1125567888999998743
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 005626 131 --RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA---GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-- 203 (687)
Q Consensus 131 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 203 (687)
+...|..+|.++-..... .+ .+.+|.++... .+...|.++|..+.. -.+..+.+.++.+|..
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~--~a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNP--DA-------QYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhcCCc--hH-------HHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCC
Confidence 678899999998876543 33 34444444443 367899999988875 4567888888888875
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 005626 204 --LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (687)
Q Consensus 204 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (687)
..+...|..++.++.+.. .+.+...++.++... +++..+.-.+....+.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 357889999999998887 455555555554433 6777666666555444
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=2.9e-05 Score=51.49 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (687)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355566666666666666666666666666666666666553
No 248
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.90 E-value=2.3e-05 Score=78.02 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=101.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
++.+-..|..++..+.|+.|+..|.++++++|+.+..+-..+..+.+.+++..|+..+.++++.+|....+|+..|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECL 156 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l 156 (687)
..+++.+|...|++...+.|+.+.+...+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999999998875443
No 249
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.87 E-value=0.067 Score=58.15 Aligned_cols=304 Identities=15% Similarity=0.037 Sum_probs=183.8
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 160 (687)
.+.+..-+..+...|...+|++..-.+ .+|.- .......+.-+...++.. .+..+++.-|... ........
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence 566677777778888888888766443 12221 112222233333444432 3333333333211 11112224
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 226 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 226 (687)
...+.......++.+|..++.++...-+. ..+..-..|.+....|+.++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 44566677789999999988887665333 13455567888899999999999999999887654 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHH--HHHHHHH----HHhCCCCH
Q 005626 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG--VAYYKKA----LYYNWHYA 300 (687)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A--~~~~~~a----l~~~p~~~ 300 (687)
++..+|.+..-.|++++|..+..++.+...... .++....+....+.+...+|+...+ ...+... +...|...
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 778889999999999999999999887754432 2233334445556666667733322 2222222 22234433
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----H
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--AE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S 368 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~ 368 (687)
......+.++...-+++.+..-..+.++. .|.. .. .+..++.+....|++++|...+.+...+-.+. .
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 34444444444444466666666666654 2222 22 23589999999999999999998887663222 1
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 369 Q--SLNNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 369 ~--~~~~la~~~~~~g~~~~A~~~~~~a 394 (687)
. +..-.......+|+.++|.....+.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1 2222233345589999998888773
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00057 Score=66.89 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=107.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 005626 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352 (687)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 352 (687)
+.....+..+.|...|+++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...++.+.
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 333445569999999999997666678999999999777 5566669999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 353 AVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 353 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
|...|++++..-+... .+|......-...|+.+...+..+++.+..|+..
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999866654 5888888889999999999999999999988843
No 251
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.077 Score=58.12 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
+.+.+|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++.-+.+..
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 45889999999999999999999998775 678888899999999999999999988877654
No 252
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.83 E-value=2.1e-05 Score=48.43 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005626 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (687)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (687)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555554
No 253
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00013 Score=68.97 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
.++.+-..|+.|+..++|..|+..|.+.|+..-. ++..|.+.|.+.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5677888999999999999999999999997544 456889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPS 148 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~ 148 (687)
+.|++.+.++++|..+.+..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.0072 Score=60.16 Aligned_cols=178 Identities=12% Similarity=0.017 Sum_probs=130.0
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHK-ALSADPSYKPA 152 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~ 152 (687)
+++....+-.+|....+|+.-++..+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999998887766 45667788889999998 9999999999999 45556677787
Q ss_pred HHHHHHHHHHhHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 005626 153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (687)
Q Consensus 153 ~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (687)
....+.+|..+-.. .......++|+..|.++.+.+|+. ..-.+++.++...|...+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77777777766433 122345899999999999999653 344566666666665433332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005626 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (687)
Q Consensus 221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (687)
.-.+...+-.++.+..-.|++++|++.+++++++.|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123445566677788889999999999999999987643
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.81 E-value=0.037 Score=54.18 Aligned_cols=160 Identities=13% Similarity=-0.023 Sum_probs=98.9
Q ss_pred HHhCChHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHH
Q 005626 93 QMQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECL 156 (687)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~~~~~~~~~~l 156 (687)
..+|+.+.|..++.++-... |+. ...+++.|......+ ++++|..+++++.+. ....++.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666554432 221 234566666666677 777777777777665 23344455566
Q ss_pred HHHHHHhHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 005626 157 AIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCN 230 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 230 (687)
..++..++.++...+..+ +|...++.+....|+.+..+...-.+....++.+++.+.+.+++...+. +......
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 777888889888877764 4555566666667888888866666666689999999999999886542 1222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 005626 231 MGVIYKNRGDLESAIACYERCLA 253 (687)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~ 253 (687)
....+.. .....+...+...+.
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHH
Confidence 2212222 334556666666554
No 256
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.02 Score=68.35 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005626 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (687)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 320 (687)
..+-+-.+++++-..-.++.....++.++...+++....|.++.|...+-++.+.. -+.+....|..+...|+...|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44444455554432222223444566777777777777777777777777766655 4567777777777777777777
Q ss_pred HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG 375 (687)
Q Consensus 321 ~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la 375 (687)
..+++.++.+ |+ . ..+...++......++. ++-+++|+.+.++.|.....++.+|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 7777777552 21 0 11222333333333432 3345666666666666555555555
No 257
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.77 E-value=2.6e-05 Score=48.04 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (687)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 388 (687)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0052 Score=57.87 Aligned_cols=156 Identities=14% Similarity=0.020 Sum_probs=87.4
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 162 (687)
+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+. .... ......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~--l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHG--LQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHH--HHHHHH
Confidence 3344455555666666666666666666666666666666666666666666666555432211111 1000 000111
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 240 (687)
+..-....++. ..+++.+..+|++.++-+.+|..+...|+.++|++.+-..++.+.. +..+...+-.++...|.
T Consensus 212 ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 LLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 11111111222 2234555668888999999999999999999998888888776543 34455555555555553
Q ss_pred HHHHH
Q 005626 241 LESAI 245 (687)
Q Consensus 241 ~~~A~ 245 (687)
-+.+.
T Consensus 288 ~Dp~~ 292 (304)
T COG3118 288 ADPLV 292 (304)
T ss_pred CCHHH
Confidence 33333
No 259
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.022 Score=52.43 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 005626 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TAL 211 (687)
Q Consensus 133 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 211 (687)
..|+..-+.++.++|.+-..+...-.++..++ .+..+-++++.+.++.+|++-.+|...-.+....|++. .-+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 44555555555555554444433333333222 22344444444444445555444444444444444444 444
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (687)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (687)
+..+.++..+..+..+|...-.+....+.++.-+.+..+.++.+-
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444444444444433
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.75 E-value=5.8e-05 Score=46.82 Aligned_cols=33 Identities=42% Similarity=0.753 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777753
No 261
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.74 E-value=5.6e-05 Score=75.33 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
.-+...+..+.|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++++|....+|+..|.+....+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34455566677888888888888888888877777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
.+|...|++...+.|+++.+...+..+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 8888888888888888777776666553
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0021 Score=60.42 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=110.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGIL 125 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 125 (687)
..+..+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+...-....+.. ..+......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4566778888999999999999999999999999999999999999999999999888876433222221 111111233
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSE 203 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 203 (687)
+.+.....+. ..+++.+..+|++.+. -+.++..+...|+.+.|.+.+-..+..+.. +..+...+-.++..
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~a-------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEA-------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 3333333322 3455667789998887 556677777789999999999888887543 44555555555555
Q ss_pred cCCHHHHH
Q 005626 204 LMQYDTAL 211 (687)
Q Consensus 204 ~g~~~~A~ 211 (687)
.|.-+.+.
T Consensus 285 ~g~~Dp~~ 292 (304)
T COG3118 285 FGPADPLV 292 (304)
T ss_pred cCCCCHHH
Confidence 55433333
No 263
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.06 Score=64.52 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------
Q 005626 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 400 (687)
Q Consensus 332 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~---------- 400 (687)
...+.|...|++....|+++.|..++-+|.+.. -+++....|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 346778888888888888888888887777765 56777788888888888888888888888652 22
Q ss_pred c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhhh
Q 005626 401 Y------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQ 440 (687)
Q Consensus 401 ~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~ 440 (687)
. ..+...++.-....|++ +.-+++|..+.++.|+..+-+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 12334444555555553 3456677788888876554433
No 264
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.013 Score=53.95 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHh
Q 005626 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE-SAIACYERCLA 253 (687)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~ 253 (687)
|++.-+.++.++|.+-.+|...-.++..++ +..+-++++..+++.+|.+..+|...-.+....|++. .-++..+.++.
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 344444455555555444444444433322 3444455555555555555555555555555555544 44555555555
Q ss_pred cCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cC-----CHHHHHHHHHHHH
Q 005626 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-ML-----KFDMAIVFYELAF 327 (687)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al 327 (687)
.+.++-.+|...-.++...+ .++.-+.+..+.++.+-.+-.+|...--+... .| ..+.-+.+..+.+
T Consensus 142 ~DaKNYHaWshRqW~~r~F~-------~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 142 DDAKNYHAWSHRQWVLRFFK-------DYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred ccccchhhhHHHHHHHHHHh-------hHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 55555445444444444432 45555555555554444333333322111111 11 1222334444455
Q ss_pred hhCCCCHHHHHHHHHHHHH
Q 005626 328 HFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~ 346 (687)
...|++..+|+.|.-++..
T Consensus 215 ~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HhCCCCccHHHHHHHHHHh
Confidence 5555555555555544443
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=9.5e-05 Score=45.84 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
++++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777764
No 266
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.68 E-value=0.092 Score=59.31 Aligned_cols=333 Identities=13% Similarity=0.014 Sum_probs=182.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHh----C---ChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 53 SYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
..-..++..+.|++|+..|+++-..-|.. .++.+..|.....+ | .+++|+..|++. .-.|.-+--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 34567788899999999999999988865 46888888887654 2 466677777653 3356677778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---------
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--------- 193 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------- 193 (687)
|.+|.++|++++-+++|.-+++..|+.+......-.+.+.+-.+.... -..|....--++...|.....
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSREEEKFLEI 636 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 999999999999999999999999998876554444444443333322 222333333333333322110
Q ss_pred --------------------H---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 194 --------------------Y---YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (687)
Q Consensus 194 --------------------~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (687)
. +.+ .+.+-.|..---.+.++++....+- .++.+.-.+...+|.++-+.+....
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 637 LYHKQQATLFCQLDKTPLQFRSSKMEL-FLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HHhhccCCceeeccCchhhhhhhhHHH-HHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 0 000 0111223333334455555554433 5666666667788888766555443
Q ss_pred HHhc-----CCCcHH--HHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHH---HH
Q 005626 251 CLAV-----SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFD---MA 319 (687)
Q Consensus 251 al~~-----~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~---~A 319 (687)
.-+. .|.+.. ....+...+..+. .......++++.+.+.+ ..|.... +....+.-....++-+ .+
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLE-ALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHH-HHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3211 121111 1111111222222 12234456666654332 2222221 2222222222333332 23
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
++.+.+...-.............+|.-..++++|-+.+..-- ....+...+....|.-+...++-+-|...|....
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 333322222122223344555666777778888877774321 1123445667777777777788888887777766
No 267
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.62 E-value=9.8e-05 Score=70.12 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (687)
.-..|...+..|.+++|++.|..++.++|.....+...+.+++++++...|+..+..+++++|+....+-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 34467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 005626 131 RLVEAAESYHKALSADPS 148 (687)
Q Consensus 131 ~~~~A~~~~~~al~~~~~ 148 (687)
++++|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999987654
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.61 E-value=0.094 Score=52.27 Aligned_cols=142 Identities=12% Similarity=-0.047 Sum_probs=82.7
Q ss_pred cccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
..+.++-.++++.+.+-.+|.+++-.+.|++...-.|--..+|...-..-+..+++......|.+++...-+ .+.|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence 445677788889999999999999999999988877777777766666666667888888888888765432 3333332
Q ss_pred HHHHHHcC-----C----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hHHHHHHcCChHHHHHHHHHHHhh
Q 005626 123 GILYKDEG-----R----LVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 123 a~~~~~~g-----~----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
-..-.+.+ + .-+|.+..-.+.-.+|.....|......+.. ++. ...+.+.+.-...|.+++..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcC
Confidence 22222211 1 2223333333333456655554443332211 111 12344455556666666654
No 269
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00097 Score=63.20 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=92.0
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005626 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (687)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (687)
.|.-+..-|+-++...+|..|+..|.+.|+..-. ++..|.+.|.+....|+|..|+.-..+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4566888899999999999999999999988443 466788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 232 GVIYKNRGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~ 257 (687)
+.++..+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776543
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.0089 Score=52.63 Aligned_cols=117 Identities=24% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 318 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
+.....++....++.+. .+...++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554442 344677888999999999999999998654432 336788999999999999999988
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
....... -.+......|.++...|+.++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7643211 013345678999999999999999999999998553
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.47 E-value=0.00028 Score=43.66 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0041 Score=54.31 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHhHHHHHHHhCChHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (687)
+.+...|......++...++..+++++...... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 345566777888899999999999999864321 2355567778888999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (687)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (687)
+++..+|.+..++..+..++...|+..+|+..|++..+
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 273
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.42 E-value=0.00042 Score=42.84 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555555444
No 274
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.39 E-value=0.18 Score=50.60 Aligned_cols=136 Identities=11% Similarity=0.000 Sum_probs=106.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
++..-.-.......|+.-.|-.-...++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-....
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 34444445556778999999999999999999999999999999999999999999988776655555556666777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (687)
..|++++|....+-.+...-++++. ....+......|-++++...+++.+.++|..
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8999999999988888766555554 3333344455688999999999999887753
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.39 E-value=0.18 Score=50.49 Aligned_cols=335 Identities=12% Similarity=-0.003 Sum_probs=177.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---------------HHH
Q 005626 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------------ACA 118 (687)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~ 118 (687)
+....+-.++.+.-...+-..-+..|..+...+..|...++.+.+.+|++.+......-... ...
T Consensus 51 rilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l 130 (549)
T PF07079_consen 51 RILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL 130 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH
Confidence 33334445666666666666666788888888999999999999999999988776542111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHH----cCChHHHHHHHH-------H
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYY-------E 182 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~-------~ 182 (687)
-...+.++...|++.++...+++.+..--. +.+.+... ...+|..|.. ....+-+..+|+ +
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~---vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA---VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH---HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 244678889999999999999988764222 22221111 1112222211 011111111111 1
Q ss_pred HHhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHHHHHH
Q 005626 183 ALKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYEKAAL 219 (687)
Q Consensus 183 al~~------------------------~p~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~~al~ 219 (687)
+-.. -|.. ..++.+..+.|. -..+.+++....+....
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~ 287 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIAS 287 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 1100 1110 011111100000 01122222222222211
Q ss_pred h--CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---------------------------------
Q 005626 220 E--RP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA--------------------------------- 261 (687)
Q Consensus 220 ~--~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------- 261 (687)
. .+ .-....-.+-....+.++..+|.+++.-...++|+....
T Consensus 288 ~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 288 SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 1 00 011112222223345566677777666665566653211
Q ss_pred -------HHHHHHHHHHhchhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhh--
Q 005626 262 -------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFHF-- 329 (687)
Q Consensus 262 -------~~~l~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~-- 329 (687)
...++..+...+.-+...|. -++|+..++.+++..+.+.......-. +-...|.+|+. .+.+.+.+
T Consensus 368 ~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~ 445 (549)
T PF07079_consen 368 IQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLED 445 (549)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHH
Confidence 11112222223333444555 788899999999888877643322211 11112222221 22222221
Q ss_pred -------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 330 -------NP---HCAEACNNL--GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 330 -------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (687)
.| .+.+.-+.+ |..++..|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++...
T Consensus 446 fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 446 FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 12 234444444 4557789999999999888889999 8999999999999999999999998764
No 276
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=0.00019 Score=68.19 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
.|.++.|++.+..++.++|.....+...+.++.++++...|+..+..+++++|+...-+-..+.+...+|++++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHh
Q 005626 393 KAIAA 397 (687)
Q Consensus 393 ~al~~ 397 (687)
.+.++
T Consensus 207 ~a~kl 211 (377)
T KOG1308|consen 207 LACKL 211 (377)
T ss_pred HHHhc
Confidence 44444
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.36 E-value=0.25 Score=51.48 Aligned_cols=377 Identities=11% Similarity=-0.015 Sum_probs=232.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-HHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH
Q 005626 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK 127 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 127 (687)
...|..-.+.|..+.+.+.|++++.--|-+.+.|..+-... -..|+.+.-...|++|......+ ...|-..-....
T Consensus 83 ~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en 162 (577)
T KOG1258|consen 83 KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN 162 (577)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh
Confidence 34577777889999999999999999998888776654443 34567777788888888765433 345655566667
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH-----cCChHHHHHHHHHHHhh--CCC---CHHHHH-H
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-----AGNTQDGIQKYYEALKI--DPH---YAPAYY-N 196 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~--~p~---~~~~~~-~ 196 (687)
.++++..-...|++.++.--....- .+...-..... .-..+++++.-...... .+. ..+.+- .
T Consensus 163 ~qks~k~v~~iyeRileiP~~~~~~------~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~ 236 (577)
T KOG1258|consen 163 GQKSWKRVANIYERILEIPLHQLNR------HFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIG 236 (577)
T ss_pred ccccHHHHHHHHHHHHhhhhhHhHH------HHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHH
Confidence 7889999999999988753221111 01110000000 11111211111111100 000 000000 0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHH
Q 005626 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTD 271 (687)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~ 271 (687)
+-.+-...+.++++...+.+.. ...-.++.......+.+..++..++. .|-+..... .+..
T Consensus 237 v~~~~~~s~~l~~~~~~l~~~~----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~----nw~~ 302 (577)
T KOG1258|consen 237 VKDSTDPSKSLTEEKTILKRIV----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK----NWRY 302 (577)
T ss_pred HhhccCccchhhHHHHHHHHHH----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH----HHHH
Confidence 0000000111122222111111 11112333344455556666666543 222221111 1222
Q ss_pred hchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCH
Q 005626 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 350 (687)
........|+++...-.+++++--.....+.|...+......|+.+-|...+.++.+. .+..+.....-+..-...|++
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 2233445789999999999999888888999999999999999999999999998887 467788888888888899999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCCHHHHHH
Q 005626 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAID 423 (687)
Q Consensus 351 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~ 423 (687)
..|...+++..+-.|+...+-........+.|+.+.+.. ++.....-..+. ...+...++. +.-.++.+.|..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999998889998888888888889999988884 333222211111 2334444443 445788999999
Q ss_pred HHHHHHhcCCCChhhhhhHHHHhhh
Q 005626 424 AYEQCLKIDPDSRNAGQNRLLAMNY 448 (687)
Q Consensus 424 ~~~~al~~~p~~~~a~~~~~~~~~~ 448 (687)
.+.++++..|++......+.-....
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHhhhcCCccHHHHHHHHHHHHh
Confidence 9999999999998776665443333
No 278
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.22 Score=50.57 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
..-..+-..+.+.|-+.+|...|.+...+.|-....+..+.++-.. .-+...+..+|+.++.....+++.|.+.-..-
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEE 540 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Confidence 3333444455556666666666666666666555555444443322 12355566666666666556666666655555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 005626 413 RDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 413 ~~~g~~~~A~~~~~~al~ 430 (687)
...|..+.+-..|.+|++
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566666666666666554
No 279
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=0.33 Score=52.44 Aligned_cols=368 Identities=13% Similarity=-0.002 Sum_probs=210.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 005626 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES 138 (687)
Q Consensus 62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 138 (687)
+.-++=+.-++.-+..++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..++-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344455566666677888888899999999999999998888888888888888887766554332 34677888899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 005626 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL 211 (687)
Q Consensus 139 ~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~ 211 (687)
|++++.-. .....|...+......+..+...++++.-...|.+++..-.. ....+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99998643 345556666666666666777778899999999998875222 2445555666666666667777
Q ss_pred HHHHHHHHhCCCCHH----HHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 212 GCYEKAALERPMYAE----AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 212 ~~~~~al~~~p~~~~----~~~~la---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
.++...+... -+.. .+.... .......+++.|..-+.+.+.............-..+...-+.....|....
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777777654 2211 111111 1112334555555554444333222221111122223333344455667766
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHH----------------------------
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAE---------------------------- 335 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~---------------------------- 335 (687)
-...+++++...+.+...|...+...-. ++-.+.+...+.+++...|-...
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 6777777776666666655554433211 11111111111111111111000
Q ss_pred ---HHHHHHHHHH-Hc-------------CCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 005626 336 ---ACNNLGVIYK-DR-------------DNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIA 396 (687)
Q Consensus 336 ---~~~~la~~~~-~~-------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 396 (687)
.+.+....+. .. ..+..|..+|...... -......+...|.++.. +++.+.+....+..+.
T Consensus 411 ~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 411 MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 0111111111 11 1233334444333332 11123345555555444 5678888888877776
Q ss_pred hCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 397 ANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 397 ~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
....... .|.....+-...|+...+..++++++.-
T Consensus 491 y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 491 YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 6554444 7888888888889999999988888764
No 280
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.34 E-value=0.21 Score=49.93 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=95.0
Q ss_pred HHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 71 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (687)
++.-++.+|++...|+.+..-+..+|.+++-.+.+++...-.|--+.+|...-..-...+++......|-+++...-+ .
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-l 109 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-L 109 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-H
Confidence 445578899999999999999999999999999999999988888888877666666678898888899888875433 2
Q ss_pred HHHHHHHHHHHHhHHHH---HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHH
Q 005626 151 PAAECLAIVLTDLGTSL---KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTALGCYEKAA 218 (687)
Q Consensus 151 ~~~~~la~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al 218 (687)
+.|...-. |...-.-. ...-..-+|-+..-...-.+|.....|...+..+. ++.+.+.-...|.+++
T Consensus 110 dLW~lYl~-YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 110 DLWMLYLE-YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred hHHHHHHH-HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 22211110 00000000 00011222333322223346776667766666544 2344556667777877
Q ss_pred HhCC
Q 005626 219 LERP 222 (687)
Q Consensus 219 ~~~p 222 (687)
...-
T Consensus 189 ~tP~ 192 (660)
T COG5107 189 QTPM 192 (660)
T ss_pred cCcc
Confidence 6533
No 281
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.006 Score=53.27 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
.+...++..+...|++++|+..+++++..+|-+..++..+..+|...|+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999999999999999999999999999988754
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.30 E-value=0.11 Score=51.69 Aligned_cols=128 Identities=27% Similarity=0.317 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------C
Q 005626 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------N 349 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~ 349 (687)
..+|..+|+.+. ....+.+.+.+|.++.. ..+..+|..+|+++.+..... ..+...++..+..-. +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 444444444222 22334445555555544 335566666666665553322 233555555555431 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005626 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (687)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (687)
...|...|.++.... ++.+...+|.+|.. ..++.+|..+|+++.+... ....+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 346777787777664 67788888877755 3478888888888888766 77788888 555555
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.28 E-value=0.032 Score=55.81 Aligned_cols=135 Identities=11% Similarity=0.071 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005626 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE 249 (687)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 249 (687)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999998888766554433 345788888888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005626 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 250 ~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (687)
+++..-....... ..........-.. ...++..+.....+.|..+.|+..++..+++
T Consensus 127 ~~l~~L~~~~~~~----------------~~~~~~~~~~e~~-------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGR----------------MTSHPDLPELEEF-------MLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccc----------------cccccchhhHHHH-------HHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8876432211000 0000000000011 1245666777788888888888888888887
Q ss_pred C
Q 005626 330 N 330 (687)
Q Consensus 330 ~ 330 (687)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.23 E-value=0.00055 Score=42.32 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777774
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.024 Score=49.97 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHH
Q 005626 100 LAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (687)
Q Consensus 100 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A 176 (687)
+.....++....++.+. -+...++..+...|++++|+..++.++....+ .. ..+.+-.+++.+...+|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~---lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-EN---LKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-HH---HHHHHHHHHHHHHHHhhhHHHH
Confidence 44444455555554443 24456777888888888888888888764333 11 1344566788888888888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005626 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (687)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 224 (687)
+..+...... .-.+......|.++...|+-++|+..|+++++..++.
T Consensus 146 L~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 8887654321 1123345667888888888888888888888886443
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.17 E-value=0.034 Score=55.66 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCCCHHHHHhHHHHHHHhCC------------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (687)
Q Consensus 69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (687)
..|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999988876554432 456778999999999999999988888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
+.+++++..+|++...|..+.. .-......-.+......|.+++..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999998877654322 111112233566666666666653
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.46 Score=50.14 Aligned_cols=139 Identities=16% Similarity=0.053 Sum_probs=79.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH----------HHHHHHH
Q 005626 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH----------THCGILY 126 (687)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~ 126 (687)
.+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +. ...- ...+.+-
T Consensus 672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~ 744 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEIS 744 (1189)
T ss_pred HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHh
Confidence 33444456667665 34454 6889999999988888888888877664321 11 0111 2334444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 204 (687)
.--|++++|.+.|-.+-+. +.. ...+...|+|-...++++..-.-+ .....++.++|..+..+
T Consensus 745 ~~~g~feeaek~yld~drr---DLA------------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRR---DLA------------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred hhhcchhHhhhhhhccchh---hhh------------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 5568888888887544221 100 112233456655555544321111 11245677777777777
Q ss_pred CCHHHHHHHHHHH
Q 005626 205 MQYDTALGCYEKA 217 (687)
Q Consensus 205 g~~~~A~~~~~~a 217 (687)
..|++|.++|.+.
T Consensus 810 ~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777664
No 288
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.11 E-value=0.34 Score=48.00 Aligned_cols=166 Identities=25% Similarity=0.282 Sum_probs=95.3
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 005626 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RG 239 (687)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 239 (687)
...+++..+...+.++-. -.+......++.+|... .+..+|..+|+.+ ....++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 345778888888887765 23346778888888753 4678899999954 345677889999999988 45
Q ss_pred CHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cC
Q 005626 240 DLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----ML 314 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 314 (687)
+..+|..+|+++.+..-... .....++..+..=........+...|...|.++.... ++.+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 89999999999988754432 2233444433331000000112234555555554443 34444444444432 12
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 315 KFDMAIVFYELAFHFNPHCAEACNNLG 341 (687)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~~~~~~~la 341 (687)
++.+|...|.++.+... ....+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 34444444444444433 33444444
No 289
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.3 Score=45.77 Aligned_cols=204 Identities=13% Similarity=0.007 Sum_probs=129.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC--------CCHHHHHhHHHHHHHhCChHHHHHHHHHH---Hhc--CCCCHHH
Q 005626 52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSEA---VKL--DPQNACA 118 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~--~p~~~~~ 118 (687)
+++|+...+.+++++|+..|.+++.... +.......++..|...|++..--+..... ... .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 6789999999999999999999997621 12357788999999999876544433322 221 1222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCH
Q 005626 119 HTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191 (687)
Q Consensus 119 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~ 191 (687)
...+-..+ .....++.-+......++-......... .-.+-..+...++..|+|.+|+......+.. .+.-.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL-r~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL-RLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 22222211 1234455555555555543322221111 1122445677888999999999988777643 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYA--EAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (687)
.++..-..+|....+..++...+..+-.. .|... ..-..-|..++...+|.-|..+|-++++-..
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 77888888899988888888877766443 23222 2223336667778899999999999987543
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.97 E-value=0.041 Score=55.68 Aligned_cols=143 Identities=17% Similarity=0.049 Sum_probs=102.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 005626 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (687)
Q Consensus 292 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~ 342 (687)
.+..+|-+.+++..++.++..+|+.+.|.+++++++-. + +.| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34678999999999999999999999999988888632 1 112 234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 005626 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (687)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 415 (687)
.+.+.|-+..|.++.+-.+.++|. ++- +++.+-....+.++++--++.++....... ..+...+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 778888999999999999999888 655 444445555667777766776666544211 1234667777777777
Q ss_pred CCH---------------HHHHHHHHHHHhcCCC
Q 005626 416 GSI---------------SLAIDAYEQCLKIDPD 434 (687)
Q Consensus 416 g~~---------------~~A~~~~~~al~~~p~ 434 (687)
++. ++|...+.+|+...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 777 7888888888877775
No 291
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.35 Score=49.84 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHH
Q 005626 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (687)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 178 (687)
+...+.+....+..|+++...+..+..+...|+.+.|+..++..+. ..-......+++.+|.++..+.+|..|-.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566667888888888888888888887777888877766 23333345567778888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 005626 179 KYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 179 ~~~~al~~~p~~~~~~~~la 198 (687)
.+....+.+.-.--.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 88877766554444444443
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.88 E-value=0.068 Score=49.45 Aligned_cols=196 Identities=12% Similarity=-0.014 Sum_probs=123.1
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHhCChHHHHHHHHHHHhcC-----CCCH-HHHHHHHHHHHHc
Q 005626 60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQNA-CAHTHCGILYKDE 129 (687)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~ 129 (687)
...+.++|+..|+++++..+... .++-.+..+.++++++++-++.|.+.+..- .+.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 477888899999999999999998877531 1111 1111111222233
Q ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 005626 130 GRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY 195 (687)
Q Consensus 130 g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~ 195 (687)
.+.+--.+.|+..+..- ..+...|. ..-..+|.+++..+.|.+-.+.+.+.-.... ...++|.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 34444444444433321 11111111 1134577777777888777777666544311 1245566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005626 196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAYC----NMGVIYKNRGDLESAIACYERCLAVSPNF 258 (687)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (687)
.-...|..+++..+-...|++++.+...- +...- .=|..+.+.|++++|..-|-++++.....
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 66778888888888888999998775432 22222 22556788899999999998888765443
No 293
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.81 E-value=0.0038 Score=58.43 Aligned_cols=78 Identities=26% Similarity=0.210 Sum_probs=60.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
++...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344556667777778888888888888888888888888888888887788888888888888888888877766554
No 294
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.80 E-value=0.0088 Score=47.55 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCC-----------hHHHHHHHHHHHhcCCCCHHHH
Q 005626 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (687)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (687)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888766 566677877765542 2358899999999999999899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 120 THCGILYKDEGRLVEAAESYHKALSA 145 (687)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (687)
+.+|.-+-....|+++....++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99888877777788888888887765
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.79 E-value=0.0012 Score=41.35 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666667777777777777664443
No 296
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.56 Score=45.27 Aligned_cols=280 Identities=15% Similarity=0.069 Sum_probs=155.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHhHHHHHHHhCChHHHHHHHHHHHh---cCCC--C
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVK---LDPQ--N 115 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~--~ 115 (687)
.++.++......++++++..|..++.. .|.+ ......++..+...|+.++-.......-. .-+. .
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 377888888889999999999999874 2222 24678899999999998776555544322 1111 1
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CC
Q 005626 116 ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DP 188 (687)
Q Consensus 116 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 188 (687)
......+-.... ..+..+.-+..+..+++-......... .-.+-..+...|...++|.+|+......+.. .+
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL-Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL-RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 112222222221 223344445555555543322222111 1223455778888999999999988777654 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-
Q 005626 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI- 260 (687)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 260 (687)
.-.+++..-...|+...+..+|...+..|-... |.. +..-..-|.++....+|.-|..+|-++++-...-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~ 245 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD 245 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCc
Confidence 345667777888899999999988887775432 211 222233466677778999999999999875433111
Q ss_pred HHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC
Q 005626 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM--LKFDMAIVFYELAFHFNP 331 (687)
Q Consensus 261 ~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p 331 (687)
.....+.-|..+..+....-+--.++-.-+.+++....+.++....+..+.+. .+|+.|+.-|..-+..+|
T Consensus 246 v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 246 VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 11111111222222222222222222233344444444555555555554332 345555555555554443
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.75 E-value=0.0026 Score=39.19 Aligned_cols=28 Identities=32% Similarity=0.615 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 337 CNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
++.+|.++..+|++++|+.+|+++++++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3333444444444444444444444333
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.74 E-value=0.0055 Score=57.42 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=40.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
.+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+|+.++|.+..+..++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4456666666666666666666666666666666666666666666666666666666665554
No 299
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.73 E-value=1.3 Score=48.77 Aligned_cols=350 Identities=7% Similarity=-0.099 Sum_probs=172.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
.+..+..|...++.|++.++.....++ ...|- ..+..........+.. ....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467889999999999999987776653 33442 2232222222222221 222455567778887765554444433
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH------
Q 005626 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG------ 198 (687)
Q Consensus 128 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la------ 198 (687)
+.+++..-+..+ ...|.+... ....+......|+.++|.....++-......+.....+-
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 344555444422 223555443 233344455667777776666665444333333333333
Q ss_pred ------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005626 199 ------------VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNFEIAKNNM 265 (687)
Q Consensus 199 ------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l 265 (687)
......|+...|......+ +..... ++..... ..+...+...+ ...+.........
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~~----~~~~~~~~~~~~~ 245 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETFA----RTTGPTDFTRQMA 245 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHHh----hccCCChhhHHHH
Confidence 3333344444433332222 111010 1111111 11122221111 1111111011111
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 341 (687)
...+..+ ...+.+.|...+.+......-.. .+...+|.-....+..++|...+..+..... +....-...
T Consensus 246 ~~~l~Rl-----ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~ 319 (644)
T PRK11619 246 AVAFASV-----ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRV 319 (644)
T ss_pred HHHHHHH-----HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHH
Confidence 1222222 35577788888876544443322 2333444433333335666666666543322 223333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------------------
Q 005626 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------------------- 401 (687)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------- 401 (687)
.+....++++.+...+...-....+.....+.+|..+...|+.++|...|+++... .+.
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~ 398 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKA 398 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCC
Confidence 44457778877777776654433455667788888888888888888888886431 110
Q ss_pred --H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 402 --A------EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 402 --~------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
. ......+..+...|+..+|...+..++..
T Consensus 399 ~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 399 PKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred CchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0 01233455566667777777777666654
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.71 E-value=0.09 Score=53.22 Aligned_cols=75 Identities=20% Similarity=0.069 Sum_probs=53.7
Q ss_pred HHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcC--------------C------------CC---HHHHHHHHH
Q 005626 74 VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------P------------QN---ACAHTHCGI 124 (687)
Q Consensus 74 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p------------~~---~~~~~~la~ 124 (687)
.+..+|-+.+.++.++.++..+|+.+.|.+.+++|+-.. + .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 356789999999999999999999999999999886421 1 11 123444455
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 125 LYKDEGRLVEAAESYHKALSADPS 148 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~ 148 (687)
.+.+.|-+..|.++.+-.+.++|.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCC
Confidence 566667777777777777777776
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.66 E-value=0.0034 Score=38.33 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.65 E-value=0.0091 Score=59.49 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=96.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
..|+.-.|.+-...++...|.++......+.+...+|.|+.+...+..+-..-.....+...+-.-...+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45666667777777777777777777777777777777777777766555443333444455555566777777777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 005626 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (687)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~ 453 (687)
+-.+...-+++++..--+..-..+|-+++|..++++.+.++|.....+.|.+....|..+|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 77776666666666555556666777788888888888887776666666665556655554
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.59 E-value=0.16 Score=43.75 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=82.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
-...++.....-...++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+.+....|..+.+.-.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35567888888899999999999999988899999999999999999999999999999999888999998888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 005626 127 KDEGRLVEAAESYHKALSADP 147 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~ 147 (687)
..+|+.+ =..+-.++++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 8888753 2233344454443
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=1.4 Score=46.67 Aligned_cols=181 Identities=12% Similarity=-0.029 Sum_probs=117.1
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---------HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (687)
+..++-|..+|+..+.+-.++-|...|-+.-.. +.- ..--...+.+-.--|++++|.+.|-.+-+. +
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr---D 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---D 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh---h
Confidence 345667777888888888888887777664321 110 011123445555568899999888554222 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 005626 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (687)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (687)
....++...|++-...+.++..-. ......+..++.++|..+.....+++|.++|.+.-. .-
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e 826 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TE 826 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hH
Confidence 122445667777666665543211 111223455688889888889999999999976432 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
++..+++...++++-..+ ...-|++...+-.+|..+...|.-++|.+.|-+.
T Consensus 827 ~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 566777777777764443 3445788888888999999999999999887663
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.40 E-value=0.0061 Score=37.14 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=13.0
Q ss_pred HHhHHHHHHHhCChHHHHHHHHHHHhcCC
Q 005626 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (687)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (687)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
No 306
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.30 E-value=2.4 Score=46.79 Aligned_cols=318 Identities=12% Similarity=-0.026 Sum_probs=179.3
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 162 (687)
...+.-+.-....|++..+.....+. .-.|- ..+.....+....+.. ....+...++.+|+.+.........+..
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 45677777888889988876655543 33332 2222222222222221 2225556667778777665444444434
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH----------
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG---------- 232 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---------- 232 (687)
++ ..+++..-+..+ ...|.+....+..+......|+.++|....+++.......+.....+-
T Consensus 109 La----~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 109 LA----RREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HH----HccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 43 356776666533 234778888888899999999998888888777655443333333333
Q ss_pred --------HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC-HHHH
Q 005626 233 --------VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-ADAM 303 (687)
Q Consensus 233 --------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 303 (687)
......|+...|......+ .++ . ..++..+..+ ..+...+...+.. ..+.. ....
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~-~---~~~a~a~~al------~~~p~~~~~~~~~---~~~~~~~~~~ 244 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQL---PAD-Y---QTIASALIKL------QNDPNTVETFART---TGPTDFTRQM 244 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---Chh-H---HHHHHHHHHH------HHCHHHHHHHhhc---cCCChhhHHH
Confidence 3334444444443333322 111 0 0111111111 1122222221111 11121 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (687)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 379 (687)
..++..-....+.+.|...+.+......-+ ..+...+|.-....+...+|..++..+.... .+.+.......+..
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al 323 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHH
Confidence 333444445667788988888765544322 2334455544444433678888888765443 23344444455556
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
..++++.....+...-....+.....|.+|+.+..+|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 889999888888776444445678999999999999999999999999854
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.25 E-value=0.059 Score=41.99 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHH
Q 005626 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLVEA 135 (687)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A 135 (687)
.+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 3566778888899999999999999999999999999999888887754 44444555555555554333
No 308
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.35 Score=50.28 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (687)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (687)
.+....++..+...+.+++.+++.+.. +...+...+....+...+..++..+|++..+..+|+......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344444677777777788888877544 467777788888999999999999999999999999999888877776666
Q ss_pred HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 005626 391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (687)
Q Consensus 391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~ 445 (687)
+.. +....|++.+....+ +.....+|+..++....+++..+.|+++.....++.+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 655 888889887766555 8999999999999999999999999998777766555
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=1.9 Score=44.72 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 435 (687)
-+..+|.++..+|+...|..+|...++. ..+ .|-+++.+|.++..+|. ..++..++.+|-+...++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4667899999999999999999988853 111 26799999999999999 999999999998877554
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.20 E-value=0.11 Score=44.92 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
.+..+..+-...++.+++...+.-.--+.|+.++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444455555666666666666666667777777677777777777777777777776666666666666667777666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005626 416 GSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (687)
|+.+ =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 6653 2333344454443
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.17 E-value=0.25 Score=39.67 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=56.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcH---
Q 005626 345 KDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA--- 402 (687)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~--- 402 (687)
+..|-|++|...++++++..... .-.+..|+.++..+|+|++++..-++++. ++.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 34566777777777777653221 23566677777778887777666666654 344443
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 403 -EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 403 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
.+.++.+..+..+|+.++|+..|+.+-+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34567888899999999999999988654
No 312
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.012 Score=36.79 Aligned_cols=28 Identities=46% Similarity=0.693 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
++.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667788888888888888888885543
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.07 E-value=0.018 Score=39.34 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
.++.+|..+.++|++++|..+.+.+|++.|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456666666777777777777777777777666553
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.03 E-value=0.52 Score=43.85 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=111.5
Q ss_pred hCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhHH
Q 005626 95 QNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADP-----SYKPAAECLAIVLTDLGT 165 (687)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~lg~ 165 (687)
..+.++|+..|++++++.+... .++-.+..+.++++++++-...|.+.+..-. +..+- ....+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK------sIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK------SINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH------HHHHHHH
Confidence 3478999999999999988653 4677788899999999999999988875311 11110 0000101
Q ss_pred HHHHcCChHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHH
Q 005626 166 SLKLAGNTQDGIQKYYEALKI--DPHYAP----AYYNLGVVYSELMQYDTALGCYEKAALERPM------------YAEA 227 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~ 227 (687)
.-....+.+--...|+..+.. +..+.. .-..+|.+|+..+.|.+-.+.+++.-..... -.+.
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111122223333333333322 111222 2346888888888888877777766443211 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh
Q 005626 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (687)
|..-..+|..+.+..+-...|++++.+...-+.. ..++.+--.-|..+...|++++|-.-|-++.+.
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 4445566667777777777777777665433221 123333334455566666676666665555543
No 315
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.01 E-value=0.95 Score=47.53 Aligned_cols=28 Identities=21% Similarity=0.005 Sum_probs=19.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIV 74 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 74 (687)
....|-.+|+..+..=+++-|.+.|.++
T Consensus 584 v~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 584 TDTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred ecchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3445667777777777777777777765
No 316
>PRK10941 hypothetical protein; Provisional
Probab=96.00 E-value=0.084 Score=50.68 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005626 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (687)
Q Consensus 339 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (687)
++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34444444444444444444444444444444444444444444444444444444444444443
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.98 E-value=0.084 Score=48.94 Aligned_cols=92 Identities=25% Similarity=0.216 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHH-------HHHHHHHhhCCC------CHHHHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI-------QKYYEALKIDPH------YAPAYY 195 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~-------~~~~~al~~~p~------~~~~~~ 195 (687)
...+++|++.|.-++-...-.......+|.++..+++++...|+.+... ..|+++++.... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456667776666654211111111235666777777777777744433 333333332211 134555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 196 NLGVVYSELMQYDTALGCYEKAALE 220 (687)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~ 220 (687)
.+|.+..+.|++++|.++|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5666666666666666666666554
No 318
>PRK10941 hypothetical protein; Provisional
Probab=95.95 E-value=0.12 Score=49.55 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
.++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3444555555555555555555555555555555555555555555555555555555555555443
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.94 E-value=0.069 Score=41.61 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445566666666666666666666666666666666666666666655
No 320
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=1.6 Score=41.22 Aligned_cols=209 Identities=11% Similarity=0.013 Sum_probs=114.2
Q ss_pred HhHHHHHHHhCChHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 86 IGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
..+|.-....+++++|+..|.+.+...- ....+...++.+|...|++..-.+.....-+.-.+..... ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k--~~ 84 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK--IT 84 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh--HH
Confidence 5677778888999999999999987622 1234678899999999987654433332211110000000 01
Q ss_pred HHHHHhH-HHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 005626 158 IVLTDLG-TSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMY 224 (687)
Q Consensus 158 ~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 224 (687)
.+...+- ..-.....++.-+..++..++..... ...-..+..++++.|+|.+|+......+.. .+.-
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 1111111 11112233444444444444332111 123345677888899999998887766532 2344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC
Q 005626 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (687)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 296 (687)
...+..-..+|....+..++...+..+-.....-.-.....+..-..-|-......++..|-.+|-++++-.
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 566666777788777777777766655433111000001112222333555556667777777777776543
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.90 E-value=0.46 Score=40.25 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=72.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
...+++.....+..++.+++..++..+--..|+.++.-..-|..+...|++.+|+..++...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34566677777778999999999998888899999999999999999999999999999988888887888888888888
Q ss_pred HcCCHH
Q 005626 128 DEGRLV 133 (687)
Q Consensus 128 ~~g~~~ 133 (687)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888753
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.88 E-value=0.038 Score=37.79 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=15.4
Q ss_pred HHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 005626 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (687)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (687)
++.+|..+++.|+|++|..+.+.+++..|+|..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444444444444444444444444444443
No 323
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.87 E-value=0.015 Score=52.43 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=58.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.....-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345677899999999999999999999999999999999999999999999999999998654433
No 324
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=1.9 Score=41.78 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=27.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Q 005626 358 QMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 400 (687)
+.+++......++....+.++.. +.+|+.|+..|+.-+..+|-
T Consensus 275 K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 275 KLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 44555555556666666666654 45677777777777666554
No 325
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.82 E-value=1.6 Score=45.86 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=28.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHH
Q 005626 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109 (687)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (687)
..++..|.+++|...----+ . ..-|..+|...+..=+++-|.+.|.++-
T Consensus 564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 45677788888765421111 1 1235566666666667777777776653
No 326
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.76 E-value=0.13 Score=41.06 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (687)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (687)
++.-++..|++-+|+++.+..+..++++. ..+..-|.++.++ +.+....+...-+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHH----------
Confidence 35566677777777777777777665554 3333344443322 2222211111111
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
.-.+++.+.++..+.|..+..++.+|.-+....-|+++..-.+++|.+
T Consensus 60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 124566777777777777777777777666666667777766666654
No 327
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.70 E-value=0.36 Score=38.80 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC------------CHHHHHhHHHHHHHhCChHHHHHHHHHHHh-------c
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (687)
.+..|+..+..|-|++|...+.++++.... ++-.+..++..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 355677888899999999999999885322 234677889999999999998888777775 3
Q ss_pred CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 112 DPQNAC----AHTHCGILYKDEGRLVEAAESYHKALSA 145 (687)
Q Consensus 112 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (687)
+.+... +.+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444433 4567788899999999999999988653
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.53 E-value=0.021 Score=34.12 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
++..+|.++..+|++++|..+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566667777777777777777777666664
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=1.6 Score=37.97 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCC
Q 005626 310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~ 383 (687)
+.+.++.++|+..|...-+..-.. .-+....+.+..+.|+...|+..|.++-.-.|.- ..+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445678889999888877665433 3456778889999999999999999887654332 2245566777888899
Q ss_pred HHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 384 MDAAAEMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 384 ~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
|++-....+..-. .+|-...+...||..-.+.|++.+|..+|.+... +.+.+....++
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 9887766654322 2444566778899999999999999999999887 44444443333
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.33 E-value=4 Score=41.97 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (687)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (687)
-++.-....+.+++... .+..+++.++.+|.+. ..++-....++.++.+-++...-..++..|.+ ++.+.+..+|.+
T Consensus 80 ~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 80 HKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 34445556677777654 4467888999999988 66778889999999998888888888888877 888999999999
Q ss_pred HHhc
Q 005626 251 CLAV 254 (687)
Q Consensus 251 al~~ 254 (687)
++..
T Consensus 157 a~yr 160 (711)
T COG1747 157 ALYR 160 (711)
T ss_pred HHHH
Confidence 8754
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.19 E-value=0.31 Score=41.28 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005626 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (687)
.++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 444455555554444445555555555555555555555555555555444444444444455555555543
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=1.9 Score=37.49 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 226 EAYCNMGVIYKNRGDLESAIACYERCL 252 (687)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al 252 (687)
.+.-.||...++.|++.+|.+.|....
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 333444444444444444444444443
No 333
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.10 E-value=0.18 Score=57.33 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=124.7
Q ss_pred HHhchhhhhcCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 005626 270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 334 (687)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 334 (687)
...+......+.+.++.+ .+. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444445666666666 444 223446778889999999999999999999988887654 35567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------- 399 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 399 (687)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889999999999999999999998876 345555778899999999999999999999998642
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
.....+..+++++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23456777888888888888888777766654
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.07 E-value=0.32 Score=43.74 Aligned_cols=102 Identities=11% Similarity=-0.109 Sum_probs=73.2
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....++.++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 57888999999999999999999998776443 2456778888888899999999988888765433 2223334444
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHh
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (687)
....|..+...++|.+|...|-.+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 44555666666777777777766543
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.01 E-value=5 Score=41.28 Aligned_cols=348 Identities=13% Similarity=0.043 Sum_probs=193.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
++.-|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...-.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 677777778777788889999999999999999999999999998888776 8999999999999999998776433221
Q ss_pred HHH---------------cCCHHHHHH--------------------------H--------------HHHHHhcCCCCH
Q 005626 126 YKD---------------EGRLVEAAE--------------------------S--------------YHKALSADPSYK 150 (687)
Q Consensus 126 ~~~---------------~g~~~~A~~--------------------------~--------------~~~al~~~~~~~ 150 (687)
-.. .++.++-++ . ++-.....|.++
T Consensus 184 EL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np 263 (568)
T KOG2396|consen 184 ELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNP 263 (568)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 110 001000000 0 000011133333
Q ss_pred HHHHHHHHHHHH------------hHHHHHHcCChHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHH--cC-CHHHHHHH
Q 005626 151 PAAECLAIVLTD------------LGTSLKLAGNTQDGIQKYYEALKIDPHYAP--AYYNLGVVYSE--LM-QYDTALGC 213 (687)
Q Consensus 151 ~~~~~la~~~~~------------lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~--~g-~~~~A~~~ 213 (687)
..+..++.-... .........+-+.....|+.+++--+...- .|.....-... .| ....-...
T Consensus 264 ~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~ 343 (568)
T KOG2396|consen 264 LLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCV 343 (568)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 333333221111 000011111222333455555544333211 12222221111 12 34555666
Q ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHH------------------
Q 005626 214 YEKAALE---RPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAKNNMAIALTD------------------ 271 (687)
Q Consensus 214 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~l~~~~~~------------------ 271 (687)
++++.+. .+..+.-+..+..++.....-.++. ......+.. +...+.........
T Consensus 344 ~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~---s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~ 420 (568)
T KOG2396|consen 344 FRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRD---SGKMWQLKLQVLIESKSDFQMLFEELFNHLRK 420 (568)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcc---hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 6666554 3455566666666666555433322 222222221 11111111111110
Q ss_pred -hchh------hhhcCC-HHHHH-H-HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 005626 272 -LGTK------VKLEGD-INQGV-A-YYKKALYY-NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (687)
Q Consensus 272 -l~~~------~~~~~~-~~~A~-~-~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 340 (687)
++.. ...+++ ..... . .+..+... .++....-..+-..+.+.|-+.+|...|.+...+.|-+...+..+
T Consensus 421 ~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~m 500 (568)
T KOG2396|consen 421 QVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKM 500 (568)
T ss_pred HhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHH
Confidence 0000 000111 11111 1 11111111 233334444556677888889999999999999988877776665
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 341 GVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 341 a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
..+-.. .-+..-+..+|+.++.....+++.|...-..-...|..+.+-..|.+|++.
T Consensus 501 iq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 501 IQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 554332 234788899999999988899999998888888899999998888888764
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.94 E-value=0.27 Score=40.65 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
..+..+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|++..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3557778888887754 45677888888886 44433 56778888889999999999999999999999887664
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.91 E-value=0.26 Score=45.68 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
.+.+.+|.+..+.|++++|.++|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555666666666666666666666554
No 338
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.89 E-value=0.19 Score=51.15 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=89.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---CChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.++.....|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 4555666666666677789999999999999999999999999998876 4666788888899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (687)
.++.+.+++.+|++....+....|.+.
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 999999999999999998888888643
No 339
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.85 E-value=0.049 Score=32.42 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 338 NNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
..+|.++...+++++|+..+++++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 344444444444444444444444433
No 340
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.49 E-value=0.12 Score=52.58 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.|+.++..++++.+|+++.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 344555555555555555555555555555442 34444555555555555555555555555555555555555555
Q ss_pred HHHHhcCCC
Q 005626 426 EQCLKIDPD 434 (687)
Q Consensus 426 ~~al~~~p~ 434 (687)
..+....|.
T Consensus 469 ~alq~~~Pt 477 (758)
T KOG1310|consen 469 WALQMSFPT 477 (758)
T ss_pred HHHhhcCch
Confidence 555555553
No 341
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.49 E-value=12 Score=43.10 Aligned_cols=135 Identities=14% Similarity=0.067 Sum_probs=88.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 199 (687)
-.++...+.|+.|+..|++.-...|.-.+.+.. .+..+...+........+.+|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 456777888999999999999999876654332 23233332222222235777887777643 35667778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc
Q 005626 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 258 (687)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~ 258 (687)
+|..+|++++-++++.-+++..|.++..-...-.+-.++ .+-..|....--++...|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999988765433322222221 12234445555555555553
No 342
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.44 E-value=0.52 Score=53.92 Aligned_cols=136 Identities=16% Similarity=0.074 Sum_probs=93.9
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHH------HHHHH-HHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc-------
Q 005626 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (687)
.+.+...+.++.....|.+.+|.+ ++... -...|.....+..++..+...+++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 456778889999999999998888 55533 2357788899999999999999999999998887654
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005626 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (687)
.|+....+..++...+..++...|...+.++..+ .|..+.. +.+..+++.++...++++.|+.+.+.++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445667788887778888888888877777653 1222221 22233444444444555555555555554
No 343
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.37 E-value=0.074 Score=48.10 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=47.8
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (687)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (687)
.....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456677788888888888888888888888888888888888888888888888877654
No 344
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.34 E-value=0.63 Score=41.84 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
.++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....+++.....+..++-...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45667777788888888888888777665433 24566677777777778877777777765543
No 345
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=3 Score=44.02 Aligned_cols=99 Identities=20% Similarity=0.130 Sum_probs=86.0
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005626 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (687)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (687)
+-.++.+.+.-.++..+|..+++.|...+..-|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-...
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34456677788888999999999999998876654 556788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 230 NMGVIYKNRGDLESAIACYERCLAV 254 (687)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~ 254 (687)
.+-.+....+.-++|+.+..+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999999998887654
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.30 E-value=1.1 Score=37.18 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005626 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (687)
Q Consensus 334 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (687)
.+..+++++++.... +..+.+.+++..++ -.|+ .-+..+.|+..+.+.++|++++.+.+..++..|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445555566555443 34455666666664 2232 2345666666666777777777777777766666655543
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.75 E-value=9.6 Score=39.40 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 269 (687)
+...+..+-.++.+..++.-......+.+.... +--+++.++.+|... ..++-...+++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 333444444455555555555566666666543 355667777777776 446666666666666555443333333222
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHH
Q 005626 270 TDLGTKVKLEGDINQGVAYYKKALY 294 (687)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~al~ 294 (687)
.. .+.+++..+|.+++.
T Consensus 143 -------Ek-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 143 -------EK-IKKSKAAEFFGKALY 159 (711)
T ss_pred -------HH-hchhhHHHHHHHHHH
Confidence 22 456666666666653
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.73 E-value=0.15 Score=32.85 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
.++.++|.+|..+|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777788888888777777764
No 349
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=8.8 Score=40.77 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (687)
+-+-|.-.++..+|..+++.|+..+...|.+...... +.....+..+|....+.+.|.++++++-+.+|.++-.....-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445666778899999999999999988887665443 888899999999999999999999999999999999988899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 005626 199 VVYSELMQYDTALGCYEKAALE 220 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (687)
.+....+.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998887654
No 350
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=7.3 Score=39.16 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG------------EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (687)
..+++++.-.+.+..+|+...+|...-.++. +..-.++-+.+...+++.+|++..+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 3456677777777888877665544322221 2224566677888888999999999999999998776
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC
Q 005626 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD------AG 416 (687)
Q Consensus 349 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g 416 (687)
++..=++..+++++.+|.+-.+|...-.+..... ...+=+++..+++..++.+-.+|.....++.. .|
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 4678888999999999988877766555554432 35667888888888888888888887777662 23
Q ss_pred C------HHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 417 S------ISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 417 ~------~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
+ ...-++.-..|+-.+|++..++...
T Consensus 204 ~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 204 NFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 1 2334555666777788888876553
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.54 E-value=7.6 Score=37.59 Aligned_cols=147 Identities=12% Similarity=0.025 Sum_probs=89.7
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 162 (687)
..-+.+-....+..+..+-++....+++++|+.+.++..++.-- ..-..+|.+.++++++.... .++
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~-----------~yr 251 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET-----------IYR 251 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH-----------HHh
Confidence 34445556667777888888889999999999999888887643 33567888888888875332 111
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRG 239 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 239 (687)
........|...+|. .+.+.+ ...+-..++.|..++|+..+|++.++...+..|-. ..++-++-..+....
T Consensus 252 ~sqq~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q 325 (556)
T KOG3807|consen 252 QSQQCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ 325 (556)
T ss_pred hHHHHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 122222222222221 111211 12334568889999999999999999888777632 233444555555554
Q ss_pred CHHHHHHHH
Q 005626 240 DLESAIACY 248 (687)
Q Consensus 240 ~~~~A~~~~ 248 (687)
-|.+....+
T Consensus 326 AYADvqavL 334 (556)
T KOG3807|consen 326 AYADVQAVL 334 (556)
T ss_pred HHHHHHHHH
Confidence 444444333
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.21 E-value=0.22 Score=31.99 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
.++.++|.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777765
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.91 E-value=0.97 Score=33.57 Aligned_cols=63 Identities=14% Similarity=-0.023 Sum_probs=43.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH---hHHHHHHHhCChHHHHHHHHHHHh
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHI---GKGICLQMQNMGRLAFDSFSEAVK 110 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~ 110 (687)
....++.|..++.+.+..+|+..++++++..++..+-+. .+..++...|+|.+.+++..+=+.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888887776655443 344556777777777766554433
No 354
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=8.1 Score=40.55 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHh------------CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc-----------------
Q 005626 61 RNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----------------- 111 (687)
Q Consensus 61 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 111 (687)
...|++|...|.-+... .|-+.+.++.++.+...+|+.+-|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45677787777766553 4667889999999999999999888888877632
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 005626 112 ----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDL 163 (687)
Q Consensus 112 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~l 163 (687)
.|.|-. +++.....+.+.|-+..|.++.+-.++++|. ++-....+..++...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 222322 2333445566789999999999999999998 666544444444333
No 355
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.74 E-value=0.21 Score=47.34 Aligned_cols=82 Identities=6% Similarity=-0.014 Sum_probs=43.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005626 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN-LGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (687)
Q Consensus 325 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (687)
++....+.++..|...+....+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...+.+++..+|+++.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3333445555555555555555555555555555555555555555544 333344455555555555555555555555
Q ss_pred HHH
Q 005626 404 AYN 406 (687)
Q Consensus 404 ~~~ 406 (687)
.|.
T Consensus 178 iw~ 180 (435)
T COG5191 178 IWI 180 (435)
T ss_pred HHH
Confidence 444
No 356
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=5 Score=40.30 Aligned_cols=131 Identities=13% Similarity=0.129 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAV 354 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~ 354 (687)
..++-+.+...+++.+|+...+|+....++.+.+. +..=+++.+++++.+|.+-.+|...=.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56677888899999999999999999999987774 688899999999999999777765544443332 356678
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 355 ECYQMALSIKPNFSQSLNNLGVVYTV------QGK------MDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
++..+++.-++.+-.+|.....++.. .|+ ...-++.-..|+-.+|++..+|+..-..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 88899999999999999988887763 231 2334555566666799998888764333
No 357
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=7.7 Score=40.68 Aligned_cols=155 Identities=10% Similarity=0.053 Sum_probs=95.7
Q ss_pred CChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 005626 171 GNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------------------ 220 (687)
Q Consensus 171 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------ 220 (687)
..|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....++++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4577888877776654 5667899999999999999999888888887521
Q ss_pred ---CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 005626 221 ---RPMYAE---AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (687)
Q Consensus 221 ---~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al 293 (687)
.|.+-. +++..-..+.+.|-+..|.++.+-.++++|. ++.....+...|...+ .+|+=-++.++..-
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~e 405 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEPE 405 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHHH
Confidence 122222 3334445567789999999999999999998 7655555544444443 33333333333331
Q ss_pred -----HhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 005626 294 -----YYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH 332 (687)
Q Consensus 294 -----~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 332 (687)
...|+.+ .-..+|..|..... -..|...+.+|+...|.
T Consensus 406 ~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 406 NMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 1223221 12233444444333 34556666666665553
No 358
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.42 E-value=3.1 Score=40.04 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=54.3
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (687)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888888888999999988889888888888888888899988888888887664
No 359
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=22 Score=40.24 Aligned_cols=113 Identities=10% Similarity=-0.008 Sum_probs=68.1
Q ss_pred HHHHhHHHHHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 005626 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------ 226 (687)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 226 (687)
-+..|+..|...|+.++|++.+.+..... +.....+-..-..+...+.. +-..++-.-.++.+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36778889999999999999999988733 33344444455555555554 5555555555555554211
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 005626 227 -------AYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTD 271 (687)
Q Consensus 227 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~ 271 (687)
.-.....-+......+-++.+++.++...... ...+..+...|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 00111223456677888899999988776553 3333334444433
No 360
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.04 E-value=1.7 Score=43.32 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--------CCC----------HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCC
Q 005626 52 LSYANILRSRNKFVDALALYEIVLEKD--------SGN----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (687)
+.-|...+++++|..|.--|..+++.. |.. ..+--.+..||+.+++.+-|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 445677888888888888888887742 111 12445689999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 114 QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (687)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (687)
....-+...|.++..+.+|.+|...+--+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766544
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.00 E-value=7.9 Score=40.57 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005626 299 YADAMYNLGVAYGEMLKFDMAIVFYELA 326 (687)
Q Consensus 299 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (687)
+...|..||......|+++-|.++|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3445555555555555555555555553
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.74 E-value=13 Score=35.85 Aligned_cols=26 Identities=8% Similarity=-0.152 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005626 298 HYADAMYNLGVAYGEMLKFDMAIVFY 323 (687)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (687)
.+++.+..+|..+.+.|++.+|..++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35678888888888888887777665
No 363
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=1.6 Score=41.44 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|-+.-|++.++..++..|+.+.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 344445566677777777777777777777777777777777777777777777777777777665443
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.68 E-value=9.3 Score=40.04 Aligned_cols=163 Identities=15% Similarity=0.039 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH--HHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
-.-.-+...-+|+++++....+ +.+..-| .......+..+.++|..+.|++.. .+++..+.+ ..+
T Consensus 264 ~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~ 330 (443)
T PF04053_consen 264 SELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQ 330 (443)
T ss_dssp HHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHH
T ss_pred HHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHh
Confidence 3344556677899999887775 2222222 344666777788888888887754 344444444 567
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (687)
.|+++.|.+..++. ++.. .|..+|.....+|+++-|..+|+++-. +..|..+|.-.|+.+
T Consensus 331 lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 331 LGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp CT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred cCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHH
Confidence 89988887765432 2233 388888999999999999999987532 455666777778876
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
.-.+..+.+...... ...-.++...|+.++.++.+.+.
T Consensus 391 ~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 391 KLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 666655555443322 12223445556777766666553
No 365
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.62 E-value=0.39 Score=45.65 Aligned_cols=90 Identities=3% Similarity=-0.078 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN-LGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
-.+.++....++++..|...+....+.|-+.+--..|.++++.+|.+.+.|.. -+.-+...++.+.+...+.+++.++|
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34555666678888888888888888888888888999999999999888876 55567778899999999999999999
Q ss_pred CCHHHHHHHHH
Q 005626 366 NFSQSLNNLGV 376 (687)
Q Consensus 366 ~~~~~~~~la~ 376 (687)
+++..|...-.
T Consensus 174 ~~p~iw~eyfr 184 (435)
T COG5191 174 RSPRIWIEYFR 184 (435)
T ss_pred CCchHHHHHHH
Confidence 98888765433
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.36 E-value=6 Score=40.61 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=48.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH--HHHhH--HHHHHHhCChHHHHHHHHHHHhc
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL 111 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 111 (687)
++..+..+..+++.++|..|.++++.+...-|.+.. .+..+ |..++..-++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 346678899999999999999999999886344333 33333 44456788999999999988765
No 367
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=9.8 Score=38.10 Aligned_cols=199 Identities=18% Similarity=0.068 Sum_probs=122.4
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhCChHHHHHHHHHHHhc-----C------C------C-
Q 005626 58 LRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----D------P------Q- 114 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~------p------~- 114 (687)
.+..|-+.+--...-++++.-|. +...++.+...++-.|. ++...+.+.+-. . | .
T Consensus 40 ~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~~ 117 (493)
T KOG2581|consen 40 QIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALKR 117 (493)
T ss_pred HHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCccccccccccccccc
Confidence 35556555555555566665443 34555555555555443 555555443321 0 1 0
Q ss_pred -----CHHHHHH-HH-HHHHHcCCHHHHHHHHHHHHhc-CCCCH-HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005626 115 -----NACAHTH-CG-ILYKDEGRLVEAAESYHKALSA-DPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 115 -----~~~~~~~-la-~~~~~~g~~~~A~~~~~~al~~-~~~~~-~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (687)
..++|.. ++ ..+..++++.+|.+.-+..+.. .-.+. .....-+.+|+.+...+...|+...-...+...+.
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 0223322 33 3334568899998887766542 11121 22223466777788888888887666666655544
Q ss_pred h-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 186 I-----DPH-YAPAYYNLGVVYSELMQYDTALGCYEKAAL--ERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 186 ~-----~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
. +.. .+...+.+-+.|...+.|+.|.....+..- ... ..+..++.+|.+..-+++|..|.+++.+++...
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 3 222 244556677888889999999888877641 111 235667889999999999999999999999999
Q ss_pred CCc
Q 005626 256 PNF 258 (687)
Q Consensus 256 ~~~ 258 (687)
|..
T Consensus 278 pq~ 280 (493)
T KOG2581|consen 278 PQH 280 (493)
T ss_pred cch
Confidence 974
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.23 E-value=2.2 Score=33.60 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
..+.|++.+|++.+.+............ ..+..++..++......|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567888888888877776543322211 123334555666666677777777777777665
No 369
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.50 E-value=0.98 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 005626 404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD 434 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 434 (687)
.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345556666666666666666 3355555544
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.30 E-value=18 Score=34.91 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 005626 221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (687)
Q Consensus 221 ~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 254 (687)
.|...+.+...+. .|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555554444 466778888888877766654
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.07 E-value=2.4 Score=40.20 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
.+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|+..++..++..|+.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 333444444444444444444444444444444444444444444444444444444443
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.03 E-value=1.6 Score=41.88 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=59.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (687)
....+..++..+...|+++.++..+++.+..+|.+...+..+-..|+..|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35566778999999999999999999999999999999999999999999999999999987664
No 373
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.53 E-value=22 Score=34.66 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (687)
+.+-+...+..+..+-++....+++++|..+.++..++.- ...-..+|.+.++++++.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 3344444455555666666666666666666666555542 122344556666665543
No 374
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.52 E-value=19 Score=34.09 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHH-HhCChHHHHHHHHHHHh
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVK 110 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 110 (687)
+.++.+|+...+.|+|++.+.++++++..++. +.+-...++.+|- ..|....+...+.....
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 45788899999999999999999999998775 3455555665553 23445555555554444
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.42 E-value=0.51 Score=26.74 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 005626 404 AYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~ 425 (687)
+...+|.++...|+.++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.20 E-value=0.58 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 377
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.93 E-value=42 Score=37.20 Aligned_cols=380 Identities=13% Similarity=0.007 Sum_probs=208.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---HhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.....+.+-..+...|++++-...-.++.+..|..+..|.....-.. ..++-.++...|++++.-. +++..|...+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHH
Confidence 34455667778888898888777777777778888877766554433 2367778888999988643 3444444444
Q ss_pred HH-------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---
Q 005626 124 IL-------YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--- 193 (687)
Q Consensus 124 ~~-------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--- 193 (687)
.. +...++++.-...|.+++........--..+..++...-..+...-..++-+.++...+... .+.++
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~ 269 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGW 269 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHH
Confidence 33 34456788888999999875443322222234445555555665555677777887777654 22111
Q ss_pred -HHHHH---HHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 194 -YYNLG---VVYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 194 -~~~la---~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
+.... .......+++.|.+-+.+. ++..+.....|..+-......|+...-...+++++...+.+...|
T Consensus 270 ~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~w 349 (881)
T KOG0128|consen 270 DLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALW 349 (881)
T ss_pred HHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHH
Confidence 11111 1112334455555543333 333444445566666666777887777777777777666665555
Q ss_pred HHHHHHHHH---hch----hhh-hcCCHHHHHHHHHHHH---HhCCCC-----------HHH---HHHHHHHH-HhcC--
Q 005626 263 NNMAIALTD---LGT----KVK-LEGDINQGVAYYKKAL---YYNWHY-----------ADA---MYNLGVAY-GEML-- 314 (687)
Q Consensus 263 ~~l~~~~~~---l~~----~~~-~~~~~~~A~~~~~~al---~~~p~~-----------~~~---~~~la~~~-~~~g-- 314 (687)
...+..+.. +.. .+. ..+...-...++++++ +.+... ... +.+....+ ...+
T Consensus 350 i~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~ 429 (881)
T KOG0128|consen 350 IGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNI 429 (881)
T ss_pred hhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444322110 000 000 0011111111111111 111100 000 11111111 1111
Q ss_pred -----------CHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH
Q 005626 315 -----------KFDMAIVFYELAFHF-NPHCAEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTV 380 (687)
Q Consensus 315 -----------~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~ 380 (687)
.|..|...+...... -......+...|.+.. .+++.+.+.......+...-.... .|.....+-..
T Consensus 430 ~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~ 509 (881)
T KOG0128|consen 430 IDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE 509 (881)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence 133444444433333 1122344555555554 456888888888887776555544 78888888888
Q ss_pred cCCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 381 QGKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
.|+...+...+++++.. +|++ .+++..+-......|.++.....-.+.
T Consensus 510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 89999999988888875 3332 345555556666677777666555443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.28 E-value=5.2 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=21.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHH
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~ 392 (687)
...+.++|+..++++++..++.++- +-.+..+|...|++.+.+++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444332 2223334444455544444433
No 379
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.17 E-value=0.89 Score=28.57 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
++..||.+-...++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.13 E-value=6.8 Score=35.48 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI 422 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 422 (687)
+++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555555444 34556666666666655322 2566666666666666666553
No 381
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=88.06 E-value=0.98 Score=48.64 Aligned_cols=257 Identities=13% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCC-CHHHHHHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPH-CAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKPN-FSQSLNNL 374 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~~~~l 374 (687)
.....-+..+...|++..|...+.+.-. +.+. ........+.+....|++++|+..+... ..+.+. ....+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 4556667888888999999888887762 2332 3455667788888889999998888741 111111 23355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc-CCC
Q 005626 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN-EGH 453 (687)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~-~~~ 453 (687)
+.++...|++-+|...+-..-.+-++......+.-.+...+...... .++. ...+++.....++-++..+-. ..+
T Consensus 105 A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~--~~~~~~~~l~GWl~La~i~~~~~~~ 180 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQ--LRRASEPDLQGWLELALIYRQYQQD 180 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHh--hhcCCCHHHHHHHHHHHHHHhccCC
Confidence 88888888888777766554443322111111111111111111111 1111 111222222222222222222 234
Q ss_pred hHHHHHHHHHHHHHHhhhcc-C-cCC-CCC--CCCCCCCeEEEEe---cCCcccchHHHHHHhhcccc---CCCceEEEE
Q 005626 454 DDKLFEAHRDWGKRFMRLYS-Q-YTS-WDN--TKDPERPLVIGYV---SPDYFTHSVSYFIEAPLVYH---DYQNYKVVV 522 (687)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~--~~~~~~~lriGy~---S~df~~h~v~~~~~~~~~~~---d~~~fev~~ 522 (687)
+.........|..++..... . .|. ... ...+..+-+|+.+ |+.|....- -.-.|++..+ ...+.+|.+
T Consensus 181 p~~l~~al~~Wq~~yP~HPA~~~lP~~l~~~~~~~~~~~~~IavLLPlsG~~a~~~~-aI~~G~~aA~~~~~~~~~~l~~ 259 (536)
T PF04348_consen 181 PAQLKQALNQWQQRYPNHPAAQYLPAALQQLLALQPAPPQRIAVLLPLSGRLARAGQ-AIRDGFLAAYYADADSRPELRF 259 (536)
T ss_dssp -----------------------------------------EEEEE--SSTTHHHHH-HHHHHHHHHH---TT--S-EEE
T ss_pred HHHHHHHHHHHHHhCcCCcccccCCHHHHHHHhhccCCccCEEEEeCCCCchhHHHH-HHHHHHHHhhcccccCCCceEE
Confidence 44555566777776643110 0 000 000 0112334466665 666664332 2344566666 456688888
Q ss_pred EecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCC
Q 005626 523 YSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDK 566 (687)
Q Consensus 523 y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~ 566 (687)
|.+... .+...+++.+...++ .-|.++.-.++.+.+....
T Consensus 260 ~Dt~~~--~~~~~~~~a~~~ga~--~ViGPL~k~~V~~l~~~~~ 299 (536)
T PF04348_consen 260 YDTNAD--SADALYQQAVADGAD--FVIGPLLKSNVEALAQLPQ 299 (536)
T ss_dssp EETTTS---HHHHHHHHHHTT----EEE---SHHHHHHHHH-GG
T ss_pred ecCCCC--CHHHHHHHHHHcCCC--EEEcCCCHHHHHHHHhcCc
Confidence 864332 333334443332222 2334555555555554444
No 382
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.00 E-value=48 Score=36.73 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=22.5
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEI 73 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 73 (687)
.+....+.....+++.|.+++|.++.+.
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566788889999999999999999843
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.98 E-value=49 Score=37.64 Aligned_cols=118 Identities=11% Similarity=-0.124 Sum_probs=58.4
Q ss_pred HHhHHHHHHHhCChHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHH---
Q 005626 85 HIGKGICLQMQNMGRLAFDSFSEAVKLD----PQNACAHTHCGILYKDEGRL--VEAAESYHKALSADPSYKPAAEC--- 155 (687)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~--- 155 (687)
+..++..|...|+.++|++.+.+..... +.....+-..-..+...+.- +-..++-.-.++.+|........
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5567777888888888888888877633 22233333333444444443 44555555555555442211000
Q ss_pred ---HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 005626 156 ---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYS 202 (687)
Q Consensus 156 ---la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 202 (687)
.+.+-...-.-+......+-++.+++.++..... ....+..++..|.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 0000011112234455666677777777766544 3333444444443
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.97 E-value=2.3 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=16.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 005626 235 YKNRGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~~~ 257 (687)
..+.|++.+|++.+.+.++....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~ 30 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ 30 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh
Confidence 45678888888888888765443
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.94 E-value=2.1 Score=26.51 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 005626 371 LNNLGVVYTVQGKMDAAAEM 390 (687)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~ 390 (687)
+..+|..+..+|++++|++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 386
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.83 E-value=4.3 Score=40.66 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADP-----------SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~-----------~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (687)
|...+++++|..|.--|..++++.. ...+....-..+...+..||...++.+-|+....+.+.++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556677777777777777766422 22233333344556677788888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEK 216 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~ 216 (687)
.-+...|.++..+.+|.+|...+--
T Consensus 263 rnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877665443
No 387
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.70 E-value=30 Score=33.98 Aligned_cols=158 Identities=12% Similarity=0.071 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------------------------CHHHHHHHHHHHHhhC-CC
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--------------------------KFDMAIVFYELAFHFN-PH 332 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~-p~ 332 (687)
+--++|+.+-+-...+.|..++++-.++.++++.. -.+++...+.+++... |.
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 34577888888888889999998877777665432 2467777788777654 33
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Q 005626 333 CAEACNNLGVIYKDR-----DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAY 405 (687)
Q Consensus 333 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 405 (687)
-....-.++.++... -++..-..+|.-...+.|+ +.+-.|.+.+..+..-.+.++...+..... -..+.-.+
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 333333444444332 3566666666666666655 455566677766666677777777766554 22334566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
...|.++.++|+.++|...|++++.+.++..+.
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 778999999999999999999999998886544
No 388
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.28 E-value=1 Score=28.27 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+++..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777765
No 389
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.91 E-value=8.4 Score=34.89 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 005626 172 NTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI 245 (687)
Q Consensus 172 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 245 (687)
.-++|...|.++-.. .-++++..+.+|..|. ..+.++++..+.++++..+. +++.+..|+.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 446677777655433 2346888999998877 67899999999999997543 5899999999999999999874
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.74 E-value=30 Score=33.10 Aligned_cols=28 Identities=0% Similarity=0.105 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 159 VLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
+-+.+..+++..|+..+|+..+++-+..
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3455667778888888888888776654
No 391
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=86.72 E-value=31 Score=36.06 Aligned_cols=54 Identities=17% Similarity=-0.073 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005626 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (687)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~ 172 (687)
....+|...+..++|+-|...|+.+.+-.. +..++..+|.++...|.+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHHHHHHhcCC
Confidence 456789999999999999999998877443 345566666666666666665553
No 392
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.69 E-value=19 Score=30.74 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=27.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (687)
...+.....+.+++.++..++.++..+..+..+|.+.+ ..+.++.++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34456666777777776666666666666666665442 334444444
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.65 E-value=26 Score=32.18 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=56.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 005626 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (687)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (687)
...+++.+...+|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-.+.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45678889999999999999999999999999999999999999999999999999988753
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=86.10 E-value=35 Score=35.70 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=14.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 409 GVLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
|.-|.+.|+...|..+|.+++....
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 4555566666666666666665543
No 395
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.75 E-value=1.3e+02 Score=39.59 Aligned_cols=131 Identities=12% Similarity=0.149 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHH---HHHHHHHcC-CHHHHHHHHHHHHhc---CCCCHHHHHH
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNN---LGVIYKDRD-NLDKAVECYQMALSI---KPNFSQSLNN 373 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~---la~~~~~~g-~~~~A~~~~~~al~~---~p~~~~~~~~ 373 (687)
+....|.+..+.|-++.++..+.+...+..-. .++... -+.+|.... ....+++..+..--. +...++.+..
T Consensus 2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 34455555566666666666666655542211 112211 122333222 333333333221100 1122456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC----HHHHHHHHHHHHhcC
Q 005626 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGS----ISLAIDAYEQCLKID 432 (687)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~----~~~A~~~~~~al~~~ 432 (687)
.|....+.|+.++|-+.|..|++++...+.+|...|..... .+. -..|+.+|-+|....
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 78888888888888888888888877777777776665432 122 234555555555443
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.56 E-value=2.8 Score=35.78 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=39.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM 97 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 97 (687)
..+..+..|+..+..|+|.-|..+.+.++..+|++.++...++.++..+|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456778888888888999999998888888888888888888888777664
No 397
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.20 E-value=69 Score=37.25 Aligned_cols=24 Identities=17% Similarity=-0.166 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005626 304 YNLGVAYGEMLKFDMAIVFYELAF 327 (687)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al 327 (687)
..|+..+...+++-+|-+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 445555666666666655555443
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.77 E-value=42 Score=32.98 Aligned_cols=161 Identities=15% Similarity=0.039 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHhcCC-CCHH
Q 005626 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------------------------RLVEAAESYHKALSADP-SYKP 151 (687)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~~-~~~~ 151 (687)
++|+..-.-...+-|..++++-.++.+.++.. -.+++...+.+++.... .-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 56777777777788888888777776655432 25667777777776543 2111
Q ss_pred HHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Q 005626 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYC 229 (687)
Q Consensus 152 ~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 229 (687)
..-.++.++ ..+ .....-+|..-..+|.-.....|+ +.+-.|.+....+..-.+.++...+..... -..+...+.
T Consensus 293 lqAAIaa~H-A~a-~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~ 369 (415)
T COG4941 293 LQAAIAALH-ARA-RRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHA 369 (415)
T ss_pred HHHHHHHHH-Hhh-cccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHH
Confidence 111111111 111 122334666666677666666665 455556666666666677788777776655 234455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
..|.++.+.|+.++|...|++++.+.++..+..
T Consensus 370 ~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 370 ARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 789999999999999999999999988765443
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.15 E-value=3.3 Score=40.57 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
|+.+|.+|..+.|++...++.+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666655443345555555555544
No 400
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=83.65 E-value=19 Score=34.17 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 194 YYNLGVVYSELMQYDTALGCYEKAALERPM 223 (687)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (687)
+..+|.+..+.++|++.+.++++++..++.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 344555555556666666666665555443
No 401
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.58 E-value=77 Score=35.14 Aligned_cols=91 Identities=18% Similarity=0.091 Sum_probs=35.2
Q ss_pred hHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 005626 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (687)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~ 166 (687)
..-.++...|+|+.|++++-+ .+.+..--..+|.++...|-+.-....-...+..++.++.. ..++.+......
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~- 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR- 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHH-
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH-
Confidence 344567778999999988876 22222212233333333443333222225555555554332 334544444444
Q ss_pred HHHcCChHHHHHHHHHH
Q 005626 167 LKLAGNTQDGIQKYYEA 183 (687)
Q Consensus 167 ~~~~g~~~~A~~~~~~a 183 (687)
.+...+..+|+++|--+
T Consensus 337 ~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 337 SFEITDPREALQYLYLI 353 (613)
T ss_dssp TTTTT-HHHHHHHHHGG
T ss_pred HHhccCHHHHHHHHHHH
Confidence 44567778888877543
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.94 E-value=5.4 Score=38.02 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|...|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345566777777777777777777777777777777777777777777777766654
No 403
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.75 E-value=74 Score=37.03 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~a 394 (687)
..|+.-+..++++-+|-+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHH
Confidence 34444445555555555444443
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.38 E-value=27 Score=38.64 Aligned_cols=92 Identities=13% Similarity=0.199 Sum_probs=45.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHH
Q 005626 342 VIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAY----NNLGVLYRD 414 (687)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~----~~la~~~~~ 414 (687)
.++...++|++|+++++.. .|.. .......|..+.. ...++-.+.+-+.+.... ...... ...-.+..-
T Consensus 498 ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if 573 (933)
T KOG2114|consen 498 ILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIF 573 (933)
T ss_pred HHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeee
Confidence 3455567777777776542 2222 2344455555544 344455555544444311 111111 112233344
Q ss_pred cCCHHHHHHHHHHHHhcCCCChh
Q 005626 415 AGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 415 ~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
.+++..-..+++...+..|+.++
T Consensus 574 ~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 574 SQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred ccCHHHHHHHHHHHHhcCCCchh
Confidence 56677666677767777776655
No 405
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.15 E-value=19 Score=38.14 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387 (687)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 387 (687)
.+..+.|+++.|.++..++ ++..-|..||.+....+++..|.+++.++..+. .|-.++...|+-+--
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHH
Confidence 3456778888887765554 456778888999999999999999888875541 122223333433322
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHHH
Q 005626 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467 (687)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (687)
...-..+-+....+ .--.+|...|+++++.+.+...-++ |+ ..+++..|+. .+.-+....|...
T Consensus 712 ~~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t~r~-pe------Aal~ArtYlp----s~vs~iv~~wk~~ 775 (794)
T KOG0276|consen 712 AVLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLISTQRL-PE------AALFARTYLP----SQVSRIVELWKED 775 (794)
T ss_pred HHHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHHhcCcC-cH------HHHHHhhhCh----HHHHHHHHHHHHH
Confidence 22111111111111 1114677889999888877654322 22 2345566654 3444455566665
Q ss_pred Hh
Q 005626 468 FM 469 (687)
Q Consensus 468 ~~ 469 (687)
+.
T Consensus 776 l~ 777 (794)
T KOG0276|consen 776 LS 777 (794)
T ss_pred hh
Confidence 54
No 406
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.89 E-value=5.8 Score=38.84 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
|..+|.+|..+.|.....++.+|.+....|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987665557788888887776
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.49 E-value=4.2 Score=26.57 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCL 429 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al 429 (687)
+.||..|..+|+.+.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345666666666666666666665
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.45 E-value=7.3 Score=37.19 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
.+...+..|...|.+.+|+++.+++++++|-+...+..+-.++..+|+--.|.+.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445567788888999999999999999999988888888899999998888888777654
No 409
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.32 E-value=2.4 Score=41.46 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
++.+-...+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 4444444444444444444444444444444444555555555555555555555554444443
No 410
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.58 E-value=69 Score=32.46 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=99.4
Q ss_pred chHhHHHH--HHHHHhCCCHHHHHHHHHHHHHhCC-C--------CHHHHHhHHHHHHHhCChHHHHHHHHHHHhc----
Q 005626 47 EGKDALSY--ANILRSRNKFVDALALYEIVLEKDS-G--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---- 111 (687)
Q Consensus 47 ~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 111 (687)
+.+.++.+ ...+..++++.+|.++-+..+..-- . .+..|+.+..++...|+...-...+...+..
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 45555443 4445567999999998887765311 1 2457888888888889877766666665543
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005626 112 -DPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (687)
Q Consensus 112 -~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (687)
+.. .......+-..|...+.|+.|.....+.. .|+.... ...+..++.+|.+..-+++|..|.+++-+++...|+
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 111 23345556678888999999998887764 2332221 245777888999999999999999999999999997
Q ss_pred C
Q 005626 190 Y 190 (687)
Q Consensus 190 ~ 190 (687)
+
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 4
No 411
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=80.48 E-value=7.8 Score=38.90 Aligned_cols=192 Identities=10% Similarity=-0.055 Sum_probs=96.0
Q ss_pred EEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHH--hh-hcCCceEeCCCCCHHHHHHHHHhC
Q 005626 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK--VM-KKGGIWRDIYGIDEKKVAAMVRED 565 (687)
Q Consensus 489 riGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~a~~i~~d 565 (687)
||.++++.+...-+...+..+.+.+....++|+++................ .. ................+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 467788877655555566677777777788888886654332211100000 00 000000011112345788899999
Q ss_pred CCcEEEecCCCCCCCcchhhccC-CCceEEecccCCCCCCC-------------CCccEEEecCCCCCccccccc---cc
Q 005626 566 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKH---VE 628 (687)
Q Consensus 566 ~idilvdl~g~t~~~r~~~~a~r-~APvq~~~lG~p~t~g~-------------~~~Dy~i~d~~~~p~~~~~~~---~E 628 (687)
++||++--.. ....-+..+..+ -.|+-+..-+.+..... ...|.+|+-....-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999997766 232233333322 24554444444332221 345555543322222223333 36
Q ss_pred ceeecCCCccccCCCCCCCCCCCC--CCCCCCCeEEEecCCC--CCCCHHHHHHHhhhhh
Q 005626 629 ELIRLPECFLCYTPSPEAGPVCPT--PALTNGFITFGSFNNL--AKVLVRSYLCLDKCST 684 (687)
Q Consensus 629 ~l~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~fn~~--~k~~~~~~~~w~~~~~ 684 (687)
++..+|+..- +....+..... ....++.++|+++.+. .|-.+..+.+|.++..
T Consensus 160 ~~~vi~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~ 216 (353)
T cd03811 160 KIEVIYNPID---IEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK 216 (353)
T ss_pred ccEEecCCcC---hhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh
Confidence 7788887532 11111111110 1234455667666654 5777888888888764
No 412
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.27 E-value=4 Score=40.04 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (687)
.....+++.+-.+.+.+..|+.....+++.+++...+++..+..+....++++|++.++.+....|++..+...+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34445577777777788888777777777777777788888888888888888888888888888887766655554443
Q ss_pred Hc
Q 005626 414 DA 415 (687)
Q Consensus 414 ~~ 415 (687)
..
T Consensus 355 ~~ 356 (372)
T KOG0546|consen 355 KK 356 (372)
T ss_pred HH
Confidence 33
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.11 E-value=62 Score=33.29 Aligned_cols=64 Identities=17% Similarity=-0.000 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNL--GVVYSELMQYDTALGCYEKAALE 220 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 220 (687)
+......+...+..++|..|.+.+..+...-|... ..+..+ |.-+...-++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33345555666677788888887777776523222 233333 33344566677777777776554
No 414
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.66 E-value=44 Score=29.69 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 005626 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKI 431 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 431 (687)
..+.+.|.++--+|-++. ++.+-.++.+.|.. -++.++|..+-.+|.++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 344455555555554442 23344444444432 12445555555555444
No 415
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.50 E-value=37 Score=36.17 Aligned_cols=153 Identities=18% Similarity=0.063 Sum_probs=84.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (687)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (687)
.+.-.|+++.|...+..+ | .+.....+..+..+|-.++|++ +.++.. - .-.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d-~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDPD-Q---RFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCChh-h---hhhhhhhcCcHHHHH
Confidence 555567777777654333 2 2344556666666676665554 333321 1 223456788888887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (687)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (687)
+...++- +..- |..||......+++..|.+++.++... ..|-.++...|+-+--...-..
T Consensus 658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHH
Confidence 7665542 2222 777888888889999999888887543 2222333344443322222222
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
+-+....+. .-.++...|+++++++.+.+.
T Consensus 718 ~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 222222221 123566778888887777654
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.34 E-value=52 Score=30.31 Aligned_cols=63 Identities=19% Similarity=0.029 Sum_probs=57.1
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (687)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (687)
...+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-++.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345677889999999999999999999999999999999999999999999999999998655
No 417
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.89 E-value=4.7 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 52 LSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
+.+|..|+..|+++.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777774
No 418
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.95 E-value=69 Score=32.65 Aligned_cols=58 Identities=19% Similarity=0.055 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-----HHHHHhHHHH--HHHhCChHHHHHHHHH
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGIC--LQMQNMGRLAFDSFSE 107 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~--~~~~g~~~~A~~~~~~ 107 (687)
....++..+++.++|..|...|++++...+.. ...+..+..+ ++..-++++|.+.+++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34446778999999999999999999875421 2334444444 5667788999999986
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.63 E-value=71 Score=32.89 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (687)
+...+.+++.-+|+|..|++.++..-- ..+-....++.+|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777766654311 1122345667777777777777777777776653
No 420
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=76.82 E-value=54 Score=29.17 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 188 PHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-----RGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 188 p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
...++....|+..+.. +.++++|.+.|+.--..+ ..+...+.+|..+.. .++...|++.+..+-.. +.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHH
Confidence 3456777777776653 456788877777654433 235566666665543 45788888888887663 34444
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNN 339 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 339 (687)
-..++.++..-..-....-+..+|.+++.++-... +..+.+.|...++.-.+ + +....|. .+. .
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p~---~ 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKPL---D 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCCc---c
Confidence 44444443332211122334788999999887654 45566666655543321 1 1111221 111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 005626 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAAN 398 (687)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 398 (687)
.+..+.-..+.++|.++--+|-++ .++.+..++.+.|.. -++.++|..+-.+|.++.
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 233444557888999998888877 456777777777754 346788888888888764
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.45 E-value=6.4 Score=23.09 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHH
Q 005626 63 KFVDALALYEIVLEKDSGNVEAHIGKG 89 (687)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (687)
+.+.|..+|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555544443
No 422
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.84 E-value=7.7 Score=22.72 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhCCCcHHH
Q 005626 386 AAAEMIEKAIAANPTYAEA 404 (687)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~ 404 (687)
.|...|++++...|.+..+
T Consensus 5 ~~r~i~e~~l~~~~~~~~~ 23 (33)
T smart00386 5 RARKIYERALEKFPKSVEL 23 (33)
T ss_pred HHHHHHHHHHHHCCCChHH
Confidence 3333333333333333333
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.68 E-value=24 Score=33.74 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCL 252 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (687)
......+|..|+..|++++|+++|+.+...... ...++..+..|+...|+.+..+.+.-+++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345567888888888888888888888654322 24567777888888888888777665544
No 424
>PF12854 PPR_1: PPR repeat
Probab=73.77 E-value=9.5 Score=23.17 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
...|..+...+.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555555555555555444
No 425
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=73.52 E-value=56 Score=27.77 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=34.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHH
Q 005626 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (687)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (687)
..+...+.....+.+++.++..++.+...+..+...|... +..+.++.++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445567888888888888888777777777777777654 3445555554
No 426
>PF12854 PPR_1: PPR repeat
Probab=72.95 E-value=10 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 225 AEAYCNMGVIYKNRGDLESAIACYER 250 (687)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (687)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45666666777777777777776654
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.96 E-value=1.7e+02 Score=32.33 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=51.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005626 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (687)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (687)
..+...+.|..|++..+-+-........++...+..+.+.. .-+++++...+=++.--.....+...|......|+.+
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~ 524 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFE 524 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHH
Confidence 45566788999998876543222222356666666666653 2344555555544442233345677788888899988
Q ss_pred HHHHHHH
Q 005626 134 EAAESYH 140 (687)
Q Consensus 134 ~A~~~~~ 140 (687)
-|...++
T Consensus 525 LA~kLle 531 (829)
T KOG2280|consen 525 LARKLLE 531 (829)
T ss_pred HHHHHHh
Confidence 8876553
No 428
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=70.31 E-value=17 Score=36.34 Aligned_cols=180 Identities=11% Similarity=0.029 Sum_probs=86.7
Q ss_pred EEEEecCCcc-cchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeC----------CCCCHHH
Q 005626 489 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 557 (687)
Q Consensus 489 riGy~S~df~-~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 557 (687)
||.++++.+. .--+...+..+.+.+.+..++|++++........ ......+ .++.+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YELDPKI-----KVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCCcc-----ceeecccccccchhccccchHH
Confidence 4677777766 2223344455555555567888888665433010 0001100 11111 1223467
Q ss_pred HHHHHHhCCCcEEEecCCCCCCCcchhhccCCCceEEecccCCCCCC------------CCCccEEEecCCCCCcccccc
Q 005626 558 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 625 (687)
Q Consensus 558 ~a~~i~~d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p~t~g------------~~~~Dy~i~d~~~~p~~~~~~ 625 (687)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++.....-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8888999999999987766 111222222222244333333322221 345676665432211112234
Q ss_pred cccceeecCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCCCCHHHHHHHhhhhh
Q 005626 626 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKVLVRSYLCLDKCST 684 (687)
Q Consensus 626 ~~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~fn~--~~k~~~~~~~~w~~~~~ 684 (687)
+..++..+|+..- +....+. .+.+..+|+++.+ ..|=.+..+.+|.++.+
T Consensus 154 ~~~~~~vi~~~~~---~~~~~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~ 205 (348)
T cd03820 154 FNKNVVVIPNPLP---FPPEEPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK 205 (348)
T ss_pred CCCCeEEecCCcC---hhhcccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh
Confidence 5567777876421 1111111 1222233444443 36667778888887753
No 429
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.85 E-value=1.9e+02 Score=32.45 Aligned_cols=62 Identities=24% Similarity=0.185 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCChHHHHHHHHHHHhc
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (687)
..+-..-.++.++..|+-|+.+.+.- ..+++. .+.+...|.-++..|++++|...|-+.+..
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34445667788888899999886652 233332 467788899999999999999999988764
No 430
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.94 E-value=1.1e+02 Score=29.39 Aligned_cols=130 Identities=18% Similarity=0.065 Sum_probs=76.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------HHH---H-HhHHHHHHHhCChHHHHHHHHHHHhcCC
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------VEA---H-IGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~---~-~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (687)
..-+-..|+.+.-..+|..|++.+++.++.-..+ .+. + ..=..++.+++++.+++...-+..+.-.
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3445566788888999999999999998743111 111 1 1122456678888888877766655433
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHhHHHHHHcCChHHHHHHH
Q 005626 114 QN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA--AECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (687)
Q Consensus 114 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (687)
+- +.++-.-...|.+.++.....+.-...+. +|+|... +..+++. .+-.++.=.|.+++|.+..
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaEL--yLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAEL--YLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHH--HHHHHHhccccHHHHHHHH
Confidence 32 34444455667788888887777777665 3443322 1122222 2233444556666666555
No 431
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.78 E-value=4e+02 Score=35.69 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHH---HHHHHHHHcC-CHHHHHHHHHHHHH-h--CCCcHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLN---NLGVVYTVQG-KMDAAAEMIEKAIA-A--NPTYAEAY 405 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~---~la~~~~~~g-~~~~A~~~~~~al~-~--~p~~~~~~ 405 (687)
+.+.+..|.+..+.|-++-++..+.+...+..-. .++.. .-+.||.... ....+++..+..-- . +...++.+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 3445566666777777777777777766653221 22222 2233444333 33344433332111 1 11235677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~ 444 (687)
...|..+.+.|+.++|-..|..|++++-.-..+|..+..
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888999999999999999999999998887777766543
No 432
>PF13041 PPR_2: PPR repeat family
Probab=68.56 E-value=27 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALS 362 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (687)
.|+.+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 433
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.42 E-value=1.1e+02 Score=29.08 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALE-RP--MYAEAYCNMGVIYKN-RGDLESAIACYER 250 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 250 (687)
..+|.+..+.++|++.+.+.+++++. ++ -+.+-...+..+|.. .|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 34556666666666666666666554 22 234444444444432 3444444444443
No 434
>PF13041 PPR_2: PPR repeat family
Probab=68.14 E-value=29 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAAL 219 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (687)
.|..+-..+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444444455555554444443
No 435
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.78 E-value=1.1e+02 Score=29.00 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh-CC--CCHHHHHhHHHHHHH-hCChHHHHHHHHHH
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLEK-DS--GNVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (687)
.++.+|...-+.++|++.+...+++++. +| -+.+-...+..+|-. .|....+...+...
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 5677889999999999999999999886 44 355666667776643 46667777776653
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.29 E-value=22 Score=32.45 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+..++..++.++..|+ +..+.+++.++...|+.++|....+++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445555666666675 777888888888888888888888888888883
No 437
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.59 E-value=60 Score=35.59 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC-
Q 005626 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID- 187 (687)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 187 (687)
.++.-.++-..|....+|+.-++..+..-++ |+..+. ...++.++.. -.+.|+-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNR----RNr~GDRakAL~~~l~lve~eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNR----RNRPGDRAKALNTVLPLVEKEG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcc----cCCCccHHHHHHHHHHHHHhcC
Confidence 4566677777888888888877777655443 432111 0001111111 123578888888888877764
Q ss_pred CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 188 PHYAPAYYNLGVVYSE---------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 188 p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
+-.++.+..-|++|.. .+..+.|+++|+++.+..|... .=.+++.++...|+
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGE 335 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhh
Confidence 3456666666777653 4567788999999998888643 23355555555543
No 438
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=66.04 E-value=46 Score=27.94 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
|+-++-.+.+....+....+++.+..+|.+|.+.|+..+|-+.+++|-
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333333333333333333334444444444444444444444444443
No 439
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.71 E-value=45 Score=27.99 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
++..+|+-++-.+.+....+....+++.+..+|.+|.+.|+..+|-+.+++|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3566777777777777777666667999999999999999999999999998764
No 440
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.28 E-value=1.5e+02 Score=29.41 Aligned_cols=192 Identities=14% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHH
Q 005626 210 ALGCYEKAALERPMYAEAYC---NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (687)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~ 286 (687)
+...|++..+.-|+.....+ .-|.++...++|.+....+..+-.......+....-...-...|......+-.+=--
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--- 363 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 363 (687)
..|+..+ +.+.+|.-|...++++.|.--+.++.. +-+.|.+.+.+.++.
T Consensus 120 ~~YE~~~--------~n~YkaLNYm~~nD~~~ArVEfnRan~--------------------rQ~~AKe~~~~ei~ka~~ 171 (449)
T COG3014 120 NIYEGVL--------INYYKALNYMLLNDSAKARVEFNRANE--------------------RQRRAKEFYYEEVQKAIK 171 (449)
T ss_pred hhHHHHH--------HHHHHHhhHHHhcchhhhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHH
Q ss_pred -------CCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 364 -------KPNFSQ-----------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 364 -------~p~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
+|+... .+.++...|..-+++-.+...|..++-..|+. +..-..+.+-...|-..+-...+
T Consensus 172 e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~-dv~kg~~~~~e~~gi~qd~~~~~ 250 (449)
T COG3014 172 EIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNG-DVNKGLGYLNEAYGISQDQSPFV 250 (449)
T ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCc-cHhHHHHHHHHHhccCchhhHHH
Q ss_pred HHHHh
Q 005626 426 EQCLK 430 (687)
Q Consensus 426 ~~al~ 430 (687)
++...
T Consensus 251 ~qY~~ 255 (449)
T COG3014 251 AQYLV 255 (449)
T ss_pred HHhcc
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=1.5e+02 Score=29.23 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH----HcCChHHHHHHHHHHHhhCCCCH
Q 005626 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK----LAGNTQDGIQKYYEALKIDPHYA 191 (687)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~p~~~ 191 (687)
.+++...+..|.+.|+-+.|.+.+.+..+..-.-.. ..........+|..+. -....++|...+++.-.-+..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~-kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN- 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH-KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN- 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh-
Confidence 445666666666666666666665555432211000 0000111222222222 2234444555555443332221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALER 221 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (687)
..-...|...+...++.+|-..|-..+...
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 112223444555566777777666665443
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.32 E-value=1.8e+02 Score=30.04 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=44.0
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHH-------h-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEAL-------K-IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al-------~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (687)
+..+.+++...|+|..|++.++..- . ..+-....++.+|-+|+.+++|.+|++.|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788899999998875431 1 1223466788899999999999999999988764
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.89 E-value=27 Score=29.90 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (687)
...+......|++.-|.++.+.++..+|++.++...++.++..+|.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666666666666665555543
No 444
>PRK12798 chemotaxis protein; Reviewed
Probab=63.15 E-value=1.9e+02 Score=29.81 Aligned_cols=102 Identities=13% Similarity=-0.012 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCHHHHHhHHHH-HHHhCChHHHHHHHHHHHhcCCCCH---HHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEK-DSGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCG 123 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la 123 (687)
+.-+..|-..+-.|+-.+|.+.+..+-.. .|...-.+..|... .+...+..+|++.|+.+-=..|... .++..--
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 33444444455555555555555443221 11122222222222 2334455555555555555555431 1222223
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (687)
.+..+.|+.+++..+-.+.+.....++
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~ 219 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSP 219 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCc
Confidence 333455555555555555555444433
No 445
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.01 E-value=38 Score=25.21 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=19.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
+..+...|..+-+.|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566677777777777777777666544
No 446
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.45 E-value=14 Score=27.53 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHhc
Q 005626 348 DNLDKAVECYQMALSI 363 (687)
Q Consensus 348 g~~~~A~~~~~~al~~ 363 (687)
|++++|+.+|..+++.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5555665555555543
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.43 E-value=1.8e+02 Score=33.95 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=42.6
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc
Q 005626 166 SLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNR 238 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 238 (687)
.+...+-.+.+.+.-.+|++.-|+ .+..+..+-+-...+|.+-+|.+.+ -.+|+. -..+..+..+++..
T Consensus 992 lle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 992 LLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhc
Confidence 344446667777777777766433 2344445555566777777776543 334542 34566666777777
Q ss_pred CCHH
Q 005626 239 GDLE 242 (687)
Q Consensus 239 g~~~ 242 (687)
|+++
T Consensus 1068 g~l~ 1071 (1480)
T KOG4521|consen 1068 GELE 1071 (1480)
T ss_pred cchH
Confidence 7654
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.99 E-value=1.6e+02 Score=28.42 Aligned_cols=171 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005626 174 QDGIQKYYEALKI----------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNM 231 (687)
Q Consensus 174 ~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 231 (687)
.+|++.+..++.- ..+....-+..+..-.-.+..++-++-+++.++....+ .+++.++
T Consensus 42 ~ka~e~l~~~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~ 121 (412)
T COG5187 42 SKALEHLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNI 121 (412)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Q 005626 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD---AMYNLGV 308 (687)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~ 308 (687)
|..|.+.++.+.+.+.+.+.+...-... .....-.+-..+|.++..+.-.++.++..+..++...+... .-...|.
T Consensus 122 aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi 200 (412)
T COG5187 122 AEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGI 200 (412)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 309 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
......++.+|-.++...+.......-.-+.-+.-|.
T Consensus 201 ~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 201 FKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
No 449
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=60.98 E-value=15 Score=21.17 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=6.2
Q ss_pred HHHHcCCHHHHHHHHH
Q 005626 377 VYTVQGKMDAAAEMIE 392 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~ 392 (687)
.|.+.|++++|.+.++
T Consensus 9 ~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 9 GYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHccchHHHHHHHHH
Confidence 3333333333333333
No 450
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=59.89 E-value=15 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 337 CNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
|..+-..|.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555543
No 451
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.53 E-value=79 Score=34.20 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=68.6
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (687)
+.++...+.+....+.-+..........+..+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 345567778888877777666667778888899999999999999999999999998 677888899999999999988
Q ss_pred HHHH
Q 005626 138 SYHK 141 (687)
Q Consensus 138 ~~~~ 141 (687)
.+++
T Consensus 96 ~~~~ 99 (578)
T PRK15490 96 ILKK 99 (578)
T ss_pred HHHH
Confidence 8873
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.53 E-value=2.2e+02 Score=29.12 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=70.5
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC
Q 005626 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--------MY 224 (687)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~ 224 (687)
.-.++..+|.-|...|+++.|++.|.++-..-. .....+.++-.+....|+|..-..+..++..... -.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 344578899999999999999999998654422 2356778888888899999888888887765410 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 225 AEAYCNMGVIYKNRGDLESAIACYERCL 252 (687)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (687)
+.....-|.+...+++|..|.++|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345555666677779999988876654
No 453
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.23 E-value=17 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHh
Q 005626 347 RDNLDKAVECYQMALS 362 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~ 362 (687)
.|+|++|+.+|..+++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3555555555555544
No 454
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=58.11 E-value=45 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEK 77 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (687)
...+..|...+..|++.+|.+.+.++-+.
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444455555555555555554433
No 455
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.68 E-value=50 Score=27.19 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 338 NNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
..+|...++.+++-.++-.|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.20 E-value=2.4e+02 Score=28.86 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--------NFSQ 369 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~ 369 (687)
.++..+|.-|...|+.+.|++.|.++-..... ....+.++-.+-...|+|..-..+-.+|...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35677888888889999998888886554332 255667777777788888877777777765410 0122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHH-H---HcCCHHHHHHHHHHHHhcCCCChh
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLY-R---DAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~-~---~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
+...-|.+.+.+++|+.|.+++-.+..- .|.+..++..|.-+- + .+..--..-..|+..+++.|.-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Confidence 4455566666777899888888765432 344444443332111 1 111112234567777777776543
No 457
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.00 E-value=1.2e+02 Score=33.46 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCC-cH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYK---NRGDLESAIACYERCLAVSPN-FE 259 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~-~~ 259 (687)
.++.-.++-..|....+|+.-+++.+..-.+ |+. ....+..+.++- +-|+-++|+...-.+++.... .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 5777888888999999999888887765443 321 112222233332 347788898888888776433 23
Q ss_pred HHHHHHHHHHHHh--chhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005626 260 IAKNNMAIALTDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (687)
Q Consensus 260 ~~~~~l~~~~~~l--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 315 (687)
+.+...+++|..+ ..-+...+..+.|+.+|+++.+..|.... =.+++.++...|+
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGE 335 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhh
Confidence 3333334444332 23344556788899999999998886432 2344555555553
No 458
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=55.93 E-value=2.2e+02 Score=28.23 Aligned_cols=157 Identities=11% Similarity=0.014 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK----LDPQNACAHTHCGILY 126 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~ 126 (687)
.+..-+..+.++++.+.++..++.+..+|--.+..+..+.++.++| ++.+.......+. .-|.-... .
T Consensus 102 ~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L-------~ 173 (301)
T TIGR03362 102 RVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL-------K 173 (301)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc-------c
Confidence 3344444457889999999999999999999999999999999999 4555555544333 33321110 0
Q ss_pred HHcCC---HHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH-h-hCC-C
Q 005626 127 KDEGR---LVEAAESYHKALS-----------ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL-K-IDP-H 189 (687)
Q Consensus 127 ~~~g~---~~~A~~~~~~al~-----------~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al-~-~~p-~ 189 (687)
+..|. -++...++..... ..+...+. .. ...-+......+..+.|+..++..+ . ..| +
T Consensus 174 F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~ 248 (301)
T TIGR03362 174 FSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDW-EE----LREEARALAAEGGLEAALQRLQQRLAQAREPRE 248 (301)
T ss_pred cCCCCCCCCHHHHHHHHhcccccccccccccccCcccccH-HH----HHHHHHHHHHcCCHHHHHHHHHhhcccCCChHH
Confidence 00010 0111111111000 00100111 00 2233455566788899999988742 2 333 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (687)
.......++.++...|+++-|...|+.+.+.
T Consensus 249 rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 249 RFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556677888899999999999999888664
No 459
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=55.91 E-value=2.4e+02 Score=28.83 Aligned_cols=61 Identities=7% Similarity=-0.186 Sum_probs=40.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (687)
.+..+++.++|..|...|..+....++...............|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557788999999999999999875532221111111122234445667889999999986
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.90 E-value=2.2e+02 Score=28.11 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH---H
Q 005626 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA---D 301 (687)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~ 301 (687)
.+++.+.+..|++.|+.+.|.+.+.+..+..-... ...........+|..+....-..+.++..+..++...+.. .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g-~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG-HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 56788888888888888888888877665432111 1111222333444444433333344443333333322211 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (687)
.-...|.......++.+|-.+|-.++..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 1222333344444555555555554443
No 461
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.72 E-value=22 Score=26.43 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHHhh
Q 005626 171 GNTQDGIQKYYEALKI 186 (687)
Q Consensus 171 g~~~~A~~~~~~al~~ 186 (687)
|++++|+.+|..+++.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8899999999888764
No 462
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.43 E-value=1.3e+02 Score=32.61 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
....+.+....+.-+.-........+..+..+-..++.++|-.+|++.+..+|+ +.+...+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 334444444444444334444445555555555556666666666666655555 445555555555555555555555
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.03 E-value=1.3e+02 Score=25.16 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 318 MAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (687)
Q Consensus 318 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (687)
.+.+.|+.+... ....+..|...|..+...|++++|.+.|+++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 555555544432 3344555555555555555555555555544
No 464
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=53.83 E-value=1.6e+02 Score=28.62 Aligned_cols=102 Identities=17% Similarity=0.070 Sum_probs=68.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHH---HHhCC----hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 54 YANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICL---QMQNM----GRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~---~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
....++..++|++=-..+++..+...+ ..+..+..+... +.... ...-.+.++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567788999999999999988764332 112112222111 11111 124667778888899999999888888
Q ss_pred HHHHcC----------------------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 125 LYKDEG----------------------RLVEAAESYHKALSADPSYKPAAEC 155 (687)
Q Consensus 125 ~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~ 155 (687)
.+.... -.+.|...+.+++.++|+...+...
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~ 138 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIG 138 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 765421 2567888899999999998776443
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.24 E-value=30 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=10.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005626 373 NLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~a 394 (687)
.+-..|.+.|++++|.+.|++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444444444444443
No 466
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.53 E-value=73 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCC
Q 005626 403 EAYNNLGVLYR---------DAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 403 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 435 (687)
..+...|..+. ..++...|..++++|++++|+-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 44555666663 4567889999999999999873
No 467
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.07 E-value=98 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=10.6
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 005626 164 GTSLKLAGNTQDGIQKYYEAL 184 (687)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al 184 (687)
+.-+-..|++.+|+.+|++++
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 333344466666655555443
No 468
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.99 E-value=59 Score=35.92 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHH--hCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQM--QNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
....++.+++.++|.+|.--|..++..-|. ........+.+++. .|++.+++.-..-++...|....++...+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 445677888888999987777777777663 23455566666655 469999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (687)
+|...+.++-|++...-.....|++..+..
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 999999999999998888888998866533
No 469
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.64 E-value=2.5e+02 Score=27.75 Aligned_cols=147 Identities=13% Similarity=0.001 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCC---HH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH----FNPHCAEACNNLGVIYKDRDN---LD 351 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~---~~ 351 (687)
++++.+.++..++.+..+|--.+..+..+.++.++|. +.+.......+. .-|.-... .+..|- -+
T Consensus 112 ~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L-------~F~DGtPFad~ 183 (301)
T TIGR03362 112 QADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLEL-------KFSDGTPFADD 183 (301)
T ss_pred CCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhc-------ccCCCCCCCCH
Confidence 5677888999999998899888999999999999994 555554444332 23321111 111110 01
Q ss_pred HHHHHHHHHHhc-----------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc
Q 005626 352 KAVECYQMALSI-----------KP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDA 415 (687)
Q Consensus 352 ~A~~~~~~al~~-----------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 415 (687)
+...++...... .+ .+......-+..+...+..++|+..++..+...++. ......+++++...
T Consensus 184 ~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~ 263 (301)
T TIGR03362 184 ETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQA 263 (301)
T ss_pred HHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHc
Confidence 122222111000 01 112223344677788899999999999866543332 33556789999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005626 416 GSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (687)
|..+-|...|+...+.-.
T Consensus 264 g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 264 GKAELAQQLYAALDQQIQ 281 (301)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887543
No 470
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.18 E-value=53 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (687)
+..++..++.++..|+ +..+..++.++...|+.++|.....++....|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445556666666674 788888888899999999999888888888884
No 471
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=51.05 E-value=6.8 Score=32.24 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=22.6
Q ss_pred cCCCceEEecccCCCCCCCCCccEEEecCCCCCcccccccccc
Q 005626 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEE 629 (687)
Q Consensus 587 ~r~APvq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~ 629 (687)
.||||+-++| ..|-++|+|....- .-.+|.|.
T Consensus 5 nrPAPveIsy---------~~MrFLIThnPtna--Tln~fieE 36 (173)
T KOG2836|consen 5 NRPAPVEISY---------KNMRFLITHNPTNA--TLNKFIEE 36 (173)
T ss_pred cCCCCeeeec---------cceEEEEecCCCch--hHHHHHHH
Confidence 4999999999 56889999975432 23445554
No 472
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.02 E-value=29 Score=26.19 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHh
Q 005626 348 DNLDKAVECYQMALS 362 (687)
Q Consensus 348 g~~~~A~~~~~~al~ 362 (687)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444445554444443
No 473
>PRK12798 chemotaxis protein; Reviewed
Probab=50.57 E-value=3e+02 Score=28.36 Aligned_cols=198 Identities=14% Similarity=0.018 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMG-VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 268 (687)
.+.-..-|..-+-.|+-.++.+.+..+-.. .|...-.+..|. -......+..+|+..|+.+--..|....-
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvE------- 184 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVE------- 184 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHH-------
Confidence 344444455555667777776666554221 122222222222 22334456667777777766666653210
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHH
Q 005626 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA---CNNLGVIYK 345 (687)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~ 345 (687)
..++..-..+..+.|+.+++..+-.+.+.....++.+ +........
T Consensus 185 -------------------------------EAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~ 233 (421)
T PRK12798 185 -------------------------------EAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVV 233 (421)
T ss_pred -------------------------------HHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 0122222223344455555555544444443333222 222222222
Q ss_pred HcCCHHHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHH
Q 005626 346 DRDNLDKAVECYQMALSI-KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSIS 419 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~-~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~ 419 (687)
+.++-.. .+.+...+.. +|. ...+|..++..-...|+.+-|...-++++.+... ...+....+....-..+++
T Consensus 234 ~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~ 312 (421)
T PRK12798 234 RLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAE 312 (421)
T ss_pred hcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHH
Confidence 2221111 1123333333 332 2456777777777777777777777777776422 1233333333444455566
Q ss_pred HHHHHHHH
Q 005626 420 LAIDAYEQ 427 (687)
Q Consensus 420 ~A~~~~~~ 427 (687)
+|.+.+.+
T Consensus 313 ~al~~L~~ 320 (421)
T PRK12798 313 SALEELSQ 320 (421)
T ss_pred HHHHHHhc
Confidence 66655544
No 474
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=2.4e+02 Score=27.20 Aligned_cols=184 Identities=13% Similarity=0.025 Sum_probs=119.8
Q ss_pred HhHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHH--------hCChHHHHHHHHHHHhcCCCCHHHH
Q 005626 49 KDALSYANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM--------QNMGRLAFDSFSEAVKLDPQNACAH 119 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~ 119 (687)
..+....+...+..+| ..|++.=...+..+|....+|...-.+... ..-.+.-+..+..+++-+|.+...|
T Consensus 32 ~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW 111 (328)
T COG5536 32 HPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIW 111 (328)
T ss_pred chHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhh
Confidence 3345555666666655 467777788888888776666655555433 2234567788899999999999998
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005626 120 THCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (687)
Q Consensus 120 ~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (687)
...-.++... .++..-....++.++.++.+...+...-.++.. +.-......+..-.++-..++..++.+..+|...
T Consensus 112 ~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 112 HHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-chhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 8887777664 668888888999999999886654322222211 2222333444555666677788889888888776
Q ss_pred ---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005626 198 ---GVVYSELMQ------YDTALGCYEKAALERPMYAEAYCNMGV 233 (687)
Q Consensus 198 ---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (687)
-......|+ +++-+++.-.++-.+|++..++..+-.
T Consensus 191 ~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 191 YIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 333333444 445556666666678888777665433
No 475
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=50.33 E-value=22 Score=35.77 Aligned_cols=193 Identities=12% Similarity=-0.026 Sum_probs=97.2
Q ss_pred EEEEecCCcccc--hHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhc-----CCceEeCCCCCHHHHHHH
Q 005626 489 VIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKK-----GGIWRDIYGIDEKKVAAM 561 (687)
Q Consensus 489 riGy~S~df~~h--~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~ 561 (687)
||.+++..+..+ .+...+..+.+.+.+..++|.+++................... ...+..........+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 466677766554 3445566677777767788888876543322211100000000 000000001122456778
Q ss_pred HHhCCCcEEEecCCCCCCCcchhhccCCCceEEecccCCCCCC------------------CCCccEEEecCCCCCcccc
Q 005626 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETK 623 (687)
Q Consensus 562 i~~d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p~t~g------------------~~~~Dy~i~d~~~~p~~~~ 623 (687)
+...++||++-...+...........+-.|+-+.+.+...... +...|++++-....-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999999888777766553344555677666655443221 2345666653322222233
Q ss_pred cccc---cceeecCCCccccCCCCCCCC---CCCCCCCCCCCeEEEecCC--CCCCCHHHHHHHhhhhh
Q 005626 624 QKHV---EELIRLPECFLCYTPSPEAGP---VCPTPALTNGFITFGSFNN--LAKVLVRSYLCLDKCST 684 (687)
Q Consensus 624 ~~~~---E~l~~lp~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~fn~--~~k~~~~~~~~w~~~~~ 684 (687)
..|. .++..+|+..- +....+. ....+......++|+.+.+ ..|=.+..+.+|..+..
T Consensus 161 ~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~ 226 (374)
T cd03801 161 ELGGVPPEKITVIPNGVD---TERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRK 226 (374)
T ss_pred hcCCCCCCcEEEecCccc---ccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhh
Confidence 4443 47888887431 1111000 0011222333344555554 56666788888776653
No 476
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=48.72 E-value=1.1e+02 Score=25.38 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHH----HHhc
Q 005626 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------AEAYNNLGVLYRDAGSISLAIDAYEQ----CLKI 431 (687)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~----al~~ 431 (687)
+..+|....+.+++-.++-.|++|+.+..+. .....+||..+..+|+.+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999998763211 22456899999999999999999864 4556
Q ss_pred CCCChhhh
Q 005626 432 DPDSRNAG 439 (687)
Q Consensus 432 ~p~~~~a~ 439 (687)
-|+-+...
T Consensus 84 iPQCp~~~ 91 (140)
T PF10952_consen 84 IPQCPNTE 91 (140)
T ss_pred ccCCCCcc
Confidence 67655443
No 477
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.64 E-value=45 Score=36.79 Aligned_cols=95 Identities=21% Similarity=0.265 Sum_probs=44.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 307 GVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
+..+++.+++..|.--|..++.+-|.+ .....+.+.++.. .+++.+++.-..-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 444445555555544444444444421 2233333333332 2355555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCc
Q 005626 381 QGKMDAAAEMIEKAIAANPTY 401 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~ 401 (687)
.++++-|++.+.-.....|.+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCc
Confidence 555555555544444444444
No 478
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.64 E-value=55 Score=19.17 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~a 394 (687)
..+..++.+.|+++.|...++..
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444443
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=47.41 E-value=38 Score=25.58 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=6.0
Q ss_pred CChHHHHHHHHHHH
Q 005626 171 GNTQDGIQKYYEAL 184 (687)
Q Consensus 171 g~~~~A~~~~~~al 184 (687)
|+.++|+.+|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 480
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=47.27 E-value=32 Score=28.86 Aligned_cols=80 Identities=19% Similarity=0.123 Sum_probs=45.3
Q ss_pred hHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCC---------------------CCHHHHH
Q 005626 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG---------------------IDEKKVA 559 (687)
Q Consensus 501 ~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~a 559 (687)
+++.-...+++.| +++|+|++.+.+..-+.+.+..+. +...++-+.+ ..++.+.
T Consensus 9 SIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~----f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~ 83 (129)
T PF02670_consen 9 SIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQARE----FKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLE 83 (129)
T ss_dssp HHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHH----HT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHH
T ss_pred HHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHH----hCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHH
Confidence 4566666777777 678999988765544444333332 2233433322 1345567
Q ss_pred HHHHhCCCcEEEecCCCCCCCcchhh
Q 005626 560 AMVREDKIDILVELTGHTANNKLGMM 585 (687)
Q Consensus 560 ~~i~~d~idilvdl~g~t~~~r~~~~ 585 (687)
+.+...++|++|.-.-.+.|-++-+.
T Consensus 84 ~~~~~~~~D~vv~Ai~G~aGL~pt~~ 109 (129)
T PF02670_consen 84 ELAEEPEVDIVVNAIVGFAGLKPTLA 109 (129)
T ss_dssp HHHTHTT-SEEEE--SSGGGHHHHHH
T ss_pred HHhcCCCCCEEEEeCcccchHHHHHH
Confidence 77777999999977666555444443
No 481
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=46.85 E-value=6.4 Score=42.50 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAAL--ERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 266 (687)
....+..-+..+...|++..|...+.+.-. +.+ .........+.+....|++++|+..+... ....- ......
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~~~l---~~~~~~ 98 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ-DLWQL---PPEQQA 98 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC-CcccC---CHHHHH
Confidence 344556667788888888888888887652 222 23445566778888888888888888641 11110 011112
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHH
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKK 291 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (687)
..+...+.++...|++-+|...+-.
T Consensus 99 ~~~~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 99 RYHQLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2333445555556666666554433
No 482
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.62 E-value=35 Score=31.91 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhC---CCC---------HHHHHhHHHHHHHhCChHH--HHHHHHHHHhc--CCCC--HHHH
Q 005626 58 LRSRNKFVDALALYEIVLEKD---SGN---------VEAHIGKGICLQMQNMGRL--AFDSFSEAVKL--DPQN--ACAH 119 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~---p~~---------~~~~~~la~~~~~~g~~~~--A~~~~~~al~~--~p~~--~~~~ 119 (687)
++..|+|+.|+++..-+++.+ |+. ++-...-+......|+.-+ -...+..+... -|+. +..+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 456799999999999999864 332 1223334444455554211 11222222211 2332 3455
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCH
Q 005626 120 THCGILYK---------DEGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 120 ~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~ 150 (687)
...|..+. ..++...|+.++++++.++|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66677663 45678899999999999998743
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.08 E-value=44 Score=24.31 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
.++..|..+-..|++++|+.+|.++++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566666666666666666666543
No 484
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.04 E-value=41 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
-.+...|..+-+.|+|++|+.+|..+++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666677777777777776654
No 485
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=45.17 E-value=62 Score=32.12 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=51.3
Q ss_pred CCCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCC---CCCH-----
Q 005626 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY---GIDE----- 555 (687)
Q Consensus 484 ~~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~----- 555 (687)
.++++|||.+.+.+...-+..-+. .-..+||.+-|... -|...+.++...-.. ++-++.. .+.+
T Consensus 14 ~G~PiRVGlIGAG~mG~~ivtQi~------~m~Gm~vvaisd~~-~~~ak~A~~~ag~~~-~~~~e~~~~s~~a~Ai~aG 85 (438)
T COG4091 14 EGKPIRVGLIGAGEMGTGIVTQIA------SMPGMEVVAISDRN-LDAAKRAYDRAGGPK-IEAVEADDASKMADAIEAG 85 (438)
T ss_pred cCCceEEEEecccccchHHHHHHh------hcCCceEEEEeccc-chHHHHHHHHhcCCc-ccccccchhhHHHHHHhcC
Confidence 478999999988776554332222 22568999987643 333333333211000 1111111 1110
Q ss_pred -----HHHHHHHHhCCCcEEEecCCCCC-CCcchhh
Q 005626 556 -----KKVAAMVREDKIDILVELTGHTA-NNKLGMM 585 (687)
Q Consensus 556 -----~~~a~~i~~d~idilvdl~g~t~-~~r~~~~ 585 (687)
.+.-..|..|.||+.||-+|+-. |.+..+-
T Consensus 86 Ki~vT~D~~~i~~~~~IdvIIdATG~p~vGA~~~l~ 121 (438)
T COG4091 86 KIAVTDDAELIIANDLIDVIIDATGVPEVGAKIALE 121 (438)
T ss_pred cEEEecchhhhhcCCcceEEEEcCCCcchhhHhHHH
Confidence 12445678899999999999754 4444443
No 486
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.12 E-value=3.2e+02 Score=27.01 Aligned_cols=217 Identities=14% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH
Q 005626 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD 128 (687)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~ 128 (687)
..-......++-..-++.+++--...|+..+.++..+...+..|+|..|-.++-....+ +++...++...-..-.-
T Consensus 100 d~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL 179 (432)
T KOG2758|consen 100 DLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL 179 (432)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--------CCHHHHHHHH
Q 005626 129 EGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLG 198 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la 198 (687)
..+|+.|.+.+.+.-+. +......+..+-.--..+-+..+-.=++.++...+-.++-..| ..+..+..++
T Consensus 180 ~qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLa 259 (432)
T KOG2758|consen 180 TQNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLA 259 (432)
T ss_pred HhhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHH
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005626 199 VVYSEL-MQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (687)
Q Consensus 199 ~~~~~~-g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 269 (687)
.+-.-. .+...+++.+-++++. .-...+.....-.+++-.-++++|...++++-+.-.++.-....+...+
T Consensus 260 tAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~ 332 (432)
T KOG2758|consen 260 TAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFL 332 (432)
T ss_pred HHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHH
No 487
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.43 E-value=41 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=18.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
+-.++..|..+-..|+|++|+.+|.++++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34456666666667777777766666554
No 488
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.94 E-value=6.4e+02 Score=29.93 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-------------------------CC----HHHHHHHHHHHHHcCCHHH
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNP-------------------------HC----AEACNNLGVIYKDRDNLDK 352 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~----~~~~~~la~~~~~~g~~~~ 352 (687)
..+.+|.+|...|+..+|+.+|.++..-.. .. ...|...-+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 455677778888888888888887764211 00 1233344455566677777
Q ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHH------
Q 005626 353 AVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAGSIS------ 419 (687)
Q Consensus 353 A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~------ 419 (687)
+.+...+|++.-|++ +.....+-.-...+|.+.+|.+.+ -.+|+. -..+..+-.++.+.|+.+
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 777777777664333 334444555556677777776433 335553 235556666666666543
Q ss_pred ------HHHH-HHHHHHhcCCCChhhhhhHHHHh
Q 005626 420 ------LAID-AYEQCLKIDPDSRNAGQNRLLAM 446 (687)
Q Consensus 420 ------~A~~-~~~~al~~~p~~~~a~~~~~~~~ 446 (687)
+-.. .++.+-+-.|-...-..+++++.
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAf 1111 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAF 1111 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHH
Confidence 3333 45555555555555555555443
No 489
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.86 E-value=3.2e+02 Score=26.44 Aligned_cols=166 Identities=8% Similarity=-0.007 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHH
Q 005626 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSE--------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR--GDLESA 244 (687)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 244 (687)
.|++.-...+..+|..-.+|...-.+... ..-++.-+.++..+++.+|.+...|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 44444455555555544444443333332 12245567778888889999988888877776655 567777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHhcCC------
Q 005626 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL---GVAYGEMLK------ 315 (687)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------ 315 (687)
....++.++.++.+...|...-.++.. ++-...-..+.+-.++-..++..++.+..+|... -......|+
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeec-chhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 778888888888876655443333322 1111122344444666667777777777777665 222333333
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 316 FDMAIVFYELAFHFNPHCAEACNNLG 341 (687)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la 341 (687)
+++-+++.-..+-.+|++..+|..+-
T Consensus 209 l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 209 LEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHHHHHHHHhhhhcCccccchhhHHH
Confidence 23334444444445666666555443
No 490
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.42 E-value=5.4e+02 Score=28.93 Aligned_cols=276 Identities=13% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 005626 92 LQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (687)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~ 169 (687)
+++.+.|++|+...+.....-|. -......+-.-+...|++++|....-+++..+..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~--------------------- 424 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAA--------------------- 424 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHH---------------------
Q ss_pred cCChHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------HHhCC
Q 005626 170 AGNTQDGIQKYYEALKI----------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA-----------------ALERP 222 (687)
Q Consensus 170 ~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------------l~~~p 222 (687)
.++..+..|.+.-.+ .|......+.+..+..-..+...=.++...- ++.+.
T Consensus 425 --eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~S 502 (846)
T KOG2066|consen 425 --EWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNS 502 (846)
T ss_pred --HHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhc
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 005626 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (687)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 302 (687)
......-.|+.+|...++|+.|+..|-++.+. .+.++-.+..-++...........++.+
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~----------------~vf~lI~k~nL~d~i~~~Iv~Lmll~sk---- 562 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDK----------------DVFDLIKKHNLFDQIKDQIVLLMLLDSK---- 562 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccCh----------------HHHHHHHHHhhHHHHHHHHHHHHccchh----
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (687)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (687)
....++....+.-.-...+++.. +++..++..-..+..... ....++-.+.+++.-....-...=-.--.+.=
T Consensus 563 --ka~~lLldn~d~ip~a~Vveql~----~~P~~l~~YL~kl~~rd~-~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y 635 (846)
T KOG2066|consen 563 --KAIDLLLDNRDSISPSEVVEQLE----DNPKLLYCYLHKLFKRDH-FMGSEYHDKQIELYAEYDRKKLLPFLRKSQNY 635 (846)
T ss_pred --hHHHHHhhccccCCHHHHHHHHh----cChHHHHHHHHHHhhcCc-cccchhhhHHHHHHHHHhHhhhhHHHHhcCCC
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
+.++|++.+.+ ...+..+..++.++|+..+|+...
T Consensus 636 ~lekA~eiC~q--------~~~~~E~VYlLgrmGn~k~AL~lI 670 (846)
T KOG2066|consen 636 NLEKALEICSQ--------KNFYEELVYLLGRMGNAKEALKLI 670 (846)
T ss_pred CHHHHHHHHHh--------hCcHHHHHHHHHhhcchHHHHHHH
No 491
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.99 E-value=57 Score=32.50 Aligned_cols=59 Identities=14% Similarity=-0.029 Sum_probs=44.2
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--------CCHHHHHhHHHHHHHhCChHHHH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAF 102 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 102 (687)
.......++..|+..+.++++++|...|..+..+.. +..++++.+|..++..++.+...
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335678899999999999999999999999876522 24566777777777766665443
No 492
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=40.93 E-value=48 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 314 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
...++|+.+..++++.+.. |++++|+.+|..+++.
T Consensus 1 ~~l~~Ai~lv~~Av~~D~~---------------g~y~eA~~lY~~ale~ 35 (75)
T cd02684 1 ESLEKAIALVVQAVKKDQR---------------GDAAAALSLYCSALQY 35 (75)
T ss_pred CcHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHH
No 493
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.74 E-value=3.4e+02 Score=28.08 Aligned_cols=26 Identities=42% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 371 LNNLGVVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~ 396 (687)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34456666777777777777766654
No 494
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=40.58 E-value=3.6e+02 Score=26.30 Aligned_cols=135 Identities=12% Similarity=-0.044 Sum_probs=75.0
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHH---HHHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 89 GICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGIL---YKDEGR----LVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~g~----~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
...++..++|++=...+.+..+...+ ..+..+..+.. ...... ...-.+.++.-++..|++..++..++..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34567788898888888877654222 11111222211 112211 1246677888889999999988877777
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
+...+......|--. .-....+.... .-.+.|...+.++++++|....+...+-.+-...|
T Consensus 87 ~~~~Aw~~RG~~~A~-------------~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 87 WVHRAWDIRGSGYAS-------------TVTEAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHccchhc-------------ccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 776654433221100 00111111111 12456777777777777777777666666666666
Q ss_pred CHH
Q 005626 240 DLE 242 (687)
Q Consensus 240 ~~~ 242 (687)
+.+
T Consensus 148 eP~ 150 (277)
T PF13226_consen 148 EPD 150 (277)
T ss_pred Cch
Confidence 654
No 495
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.31 E-value=2.6e+02 Score=28.89 Aligned_cols=115 Identities=17% Similarity=0.009 Sum_probs=58.5
Q ss_pred HHHhHHHHHHHhCChHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCC
Q 005626 84 AHIGKGICLQMQNMGRLAFDSFSEAVKL-----------DPQNACAHTHCGILYKDEGRL---VEAAESYHKALSADPSY 149 (687)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~ 149 (687)
.++..|.+.+....|++|+.++-.|-+. -.+.+-.-..+.+||+.+.+. +.|..-+..+-+-....
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3455677788888899988877665442 222333444556777776543 33443333332211100
Q ss_pred HHHHHHHHHHHHHhHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 150 KPAAECLAIVLTDLGTSLKLAGN--TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (687)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (687)
. + .++...+.-.|. .+.|+ + ...+..-|.+.+.+|+-++|.++++.+..
T Consensus 245 y------G---enl~Rl~~lKg~~spEraL--~----------lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 Y------G---ENLSRLRSLKGGQSPERAL--I----------LRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred h------h---hhhHhhhhccCCCChhHHH--H----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0 0 001111111121 11221 1 12344557778888888888888887754
No 496
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=39.96 E-value=37 Score=27.95 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHH-hCCCcEEEecCCCCCCCcchhhccCCCceE
Q 005626 515 YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR-EDKIDILVELTGHTANNKLGMMACQPAPVQ 593 (687)
Q Consensus 515 ~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~-~d~idilvdl~g~t~~~r~~~~a~r~APvq 593 (687)
..+++.+.+..+...++..++++..+ +.+. .+++=||.|+-|.|..|...-+..+.-+++
T Consensus 27 ~~~i~~i~~~~~~~~~~~~~~l~~~i-------------------~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~ 87 (116)
T TIGR00824 27 QNNVGAVPFVPGENAETLQEKYNAAL-------------------ADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMD 87 (116)
T ss_pred cCCeEEEEcCCCcCHHHHHHHHHHHH-------------------HhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEE
Confidence 45577776655444455555554432 2232 377888999999999887654544444776
Q ss_pred E
Q 005626 594 V 594 (687)
Q Consensus 594 ~ 594 (687)
|
T Consensus 88 v 88 (116)
T TIGR00824 88 V 88 (116)
T ss_pred E
Confidence 3
No 497
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.89 E-value=2.8e+02 Score=24.96 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 64 FVDALALYEIVLEKDSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (687)
.+.|+..++.+-+..+.. --.-.....++++.|.+++|.+.+++... +|++......|..+-...+.+..-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Q ss_pred HHHH
Q 005626 136 AESY 139 (687)
Q Consensus 136 ~~~~ 139 (687)
+..|
T Consensus 164 lqnF 167 (200)
T cd00280 164 LQNF 167 (200)
T ss_pred HHhc
No 498
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.88 E-value=1.3e+02 Score=24.27 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 005626 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (687)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (687)
.....|...+..|++..|.+.+.++.+..+...-.+..-+.....+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 444556666677777777777777766655444455555555555543
No 499
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.79 E-value=2e+02 Score=23.22 Aligned_cols=87 Identities=6% Similarity=-0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (687)
+.+.|.+--.....++|..+.+-.-........+..-+...++++|+|++|+ . +......++.--.++.+-.+.|
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l--~~~~~~~pdL~p~~AL~a~klG 83 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---L--LPQCHCYPDLEPWAALCAWKLG 83 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---H--HHTTS--GGGHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---H--hcccCCCccHHHHHHHHHHhhc
Confidence 4456666666778888888877654444334456666778899999999992 2 2334445556666777888899
Q ss_pred CHHHHHHHHHHH
Q 005626 131 RLVEAAESYHKA 142 (687)
Q Consensus 131 ~~~~A~~~~~~a 142 (687)
--+++...+.+.
T Consensus 84 L~~~~e~~l~rl 95 (116)
T PF09477_consen 84 LASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999888888754
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.30 E-value=1.4e+02 Score=21.27 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (687)
..+..+...|+|=+|-+.++.+-...+.. ......+.+....|....+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34556677888888888888887655544 33444455555566666777777777654
Done!