Query 005626
Match_columns 687
No_of_seqs 1700 out of 3611
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 02:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 1.6E-83 5.4E-88 706.4 42.6 370 267-642 10-390 (723)
2 3q3e_A HMW1C-like glycosyltran 100.0 1.4E-53 4.9E-58 441.9 21.4 236 439-685 224-467 (631)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-43 3.8E-48 369.9 49.8 379 52-444 3-381 (388)
4 2vsy_A XCC0866; transferase, g 100.0 2.1E-43 7.3E-48 386.2 46.3 389 279-684 2-402 (568)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-40 9.4E-45 344.3 48.2 359 45-417 30-388 (388)
6 2gw1_A Mitochondrial precursor 100.0 1.6E-38 5.6E-43 343.9 43.4 387 47-442 5-489 (514)
7 3fp2_A TPR repeat-containing p 100.0 2.1E-37 7.3E-42 337.2 42.8 386 47-441 24-501 (537)
8 2xpi_A Anaphase-promoting comp 100.0 2.1E-36 7E-41 334.0 49.4 388 46-441 82-589 (597)
9 2y4t_A DNAJ homolog subfamily 100.0 6.6E-36 2.3E-40 317.7 45.9 335 43-377 21-372 (450)
10 2xpi_A Anaphase-promoting comp 100.0 5.7E-35 2E-39 322.4 49.1 372 80-462 82-574 (597)
11 2y4t_A DNAJ homolog subfamily 100.0 3.1E-35 1.1E-39 312.6 41.7 359 64-436 8-415 (450)
12 3ieg_A DNAJ homolog subfamily 100.0 3.7E-34 1.3E-38 294.1 46.0 341 47-416 2-354 (359)
13 3ieg_A DNAJ homolog subfamily 100.0 4.3E-33 1.5E-37 286.1 44.7 329 81-445 2-349 (359)
14 2gw1_A Mitochondrial precursor 100.0 1.5E-33 5.1E-38 305.0 41.6 355 47-409 38-490 (514)
15 4g1t_A Interferon-induced prot 100.0 1E-33 3.4E-38 302.9 39.2 381 47-441 50-469 (472)
16 3fp2_A TPR repeat-containing p 100.0 9.9E-33 3.4E-37 300.3 40.2 353 45-406 56-500 (537)
17 3hym_B Cell division cycle pro 100.0 1.2E-30 4E-35 264.7 35.9 301 45-384 19-321 (330)
18 3hym_B Cell division cycle pro 100.0 1.1E-30 3.9E-35 264.8 35.3 296 75-418 15-321 (330)
19 1fch_A Peroxisomal targeting s 100.0 4.4E-31 1.5E-35 272.4 27.9 300 128-431 37-359 (368)
20 2xm6_A Protein corresponding t 100.0 6.6E-28 2.2E-32 258.5 53.5 367 45-441 36-445 (490)
21 4g1t_A Interferon-induced prot 100.0 4.6E-29 1.6E-33 266.7 38.2 361 81-460 50-452 (472)
22 1fch_A Peroxisomal targeting s 100.0 2.7E-30 9.1E-35 266.6 27.4 292 91-397 34-359 (368)
23 4eqf_A PEX5-related protein; a 100.0 7.3E-30 2.5E-34 263.1 25.5 291 137-430 48-355 (365)
24 2xm6_A Protein corresponding t 100.0 5.3E-26 1.8E-30 243.7 47.3 368 46-442 73-478 (490)
25 3cv0_A Peroxisome targeting si 100.0 5.9E-28 2E-32 244.4 29.5 277 160-436 24-320 (327)
26 2ooe_A Cleavage stimulation fa 100.0 4.9E-26 1.7E-30 246.6 46.3 412 45-468 10-493 (530)
27 4eqf_A PEX5-related protein; a 100.0 4.3E-28 1.5E-32 249.8 27.5 273 46-325 63-352 (365)
28 2h6f_A Protein farnesyltransfe 100.0 1.3E-27 4.5E-32 244.0 27.5 262 75-380 90-365 (382)
29 2h6f_A Protein farnesyltransfe 100.0 5.5E-28 1.9E-32 246.8 24.2 253 184-444 90-361 (382)
30 3cv0_A Peroxisome targeting si 100.0 1E-26 3.5E-31 235.2 30.8 277 47-330 20-316 (327)
31 3e4b_A ALGK; tetratricopeptide 99.9 6.5E-26 2.2E-30 239.1 30.8 381 52-467 7-421 (452)
32 2ooe_A Cleavage stimulation fa 99.9 2.5E-24 8.6E-29 233.1 41.5 384 44-436 42-497 (530)
33 3u4t_A TPR repeat-containing p 99.9 6.6E-26 2.3E-30 222.9 24.4 248 191-442 3-261 (272)
34 3uq3_A Heat shock protein STI1 99.9 3.3E-25 1.1E-29 215.8 28.4 226 157-398 5-237 (258)
35 3uq3_A Heat shock protein STI1 99.9 1.9E-25 6.4E-30 217.5 26.6 243 190-441 4-252 (258)
36 3u4t_A TPR repeat-containing p 99.9 2.5E-25 8.4E-30 218.8 26.9 253 47-307 2-262 (272)
37 3mkr_A Coatomer subunit epsilo 99.9 1.3E-24 4.5E-29 214.8 30.7 261 90-370 7-271 (291)
38 2pl2_A Hypothetical conserved 99.9 3.5E-25 1.2E-29 209.2 24.3 211 188-429 2-212 (217)
39 2pl2_A Hypothetical conserved 99.9 6.1E-25 2.1E-29 207.6 25.0 207 158-395 6-212 (217)
40 3mkr_A Coatomer subunit epsilo 99.9 1.5E-24 5E-29 214.4 28.3 259 166-439 8-272 (291)
41 3sf4_A G-protein-signaling mod 99.9 1.1E-25 3.8E-30 235.1 21.1 299 118-420 11-365 (406)
42 3sf4_A G-protein-signaling mod 99.9 1.4E-25 4.9E-30 234.3 19.1 305 46-386 7-365 (406)
43 4a1s_A PINS, partner of inscut 99.9 1.3E-24 4.3E-29 227.7 19.2 285 82-436 48-377 (411)
44 4a1s_A PINS, partner of inscut 99.9 3.6E-24 1.2E-28 224.3 21.9 280 157-465 48-370 (411)
45 3ro2_A PINS homolog, G-protein 99.9 5E-24 1.7E-28 216.1 21.5 276 159-435 7-336 (338)
46 2q7f_A YRRB protein; TPR, prot 99.9 2.3E-23 7.8E-28 200.8 23.4 220 41-267 16-235 (243)
47 3e4b_A ALGK; tetratricopeptide 99.9 4.3E-23 1.5E-27 217.6 25.5 352 47-432 34-422 (452)
48 3ro2_A PINS homolog, G-protein 99.9 1.2E-23 4.2E-28 213.2 20.0 278 119-400 8-335 (338)
49 1ouv_A Conserved hypothetical 99.9 1.7E-21 5.8E-26 191.5 32.7 232 187-437 2-257 (273)
50 2q7f_A YRRB protein; TPR, prot 99.9 1E-22 3.5E-27 196.2 23.5 214 191-411 23-236 (243)
51 2ho1_A Type 4 fimbrial biogene 99.9 4.7E-22 1.6E-26 192.8 27.8 208 48-262 37-246 (252)
52 3vtx_A MAMA; tetratricopeptide 99.9 2E-22 6.7E-27 185.2 23.6 172 266-437 5-176 (184)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.7E-22 2.3E-26 194.4 26.5 252 125-391 14-269 (275)
54 3ulq_A Response regulator aspa 99.9 9.2E-23 3.1E-27 211.3 20.6 241 193-434 105-371 (383)
55 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-22 7.2E-27 198.0 22.0 248 166-425 14-269 (275)
56 2ho1_A Type 4 fimbrial biogene 99.9 1.3E-21 4.3E-26 189.8 26.7 208 191-439 37-246 (252)
57 2vq2_A PILW, putative fimbrial 99.9 3.5E-21 1.2E-25 182.9 29.2 211 188-439 5-219 (225)
58 1ouv_A Conserved hypothetical 99.9 1.1E-20 3.6E-25 185.8 33.4 230 113-402 3-256 (273)
59 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-21 3.7E-26 180.2 24.4 172 80-258 3-174 (184)
60 4abn_A Tetratricopeptide repea 99.9 4E-22 1.4E-26 211.5 23.3 225 171-428 82-318 (474)
61 2vq2_A PILW, putative fimbrial 99.9 7.1E-21 2.4E-25 180.7 29.5 212 157-407 8-221 (225)
62 2ond_A Cleavage stimulation fa 99.9 2.6E-21 9E-26 193.5 26.6 229 133-367 33-274 (308)
63 4abn_A Tetratricopeptide repea 99.9 6.2E-22 2.1E-26 210.1 23.2 165 283-448 120-304 (474)
64 1xi4_A Clathrin heavy chain; a 99.9 7.2E-20 2.5E-24 203.8 39.6 334 46-442 983-1320(1630)
65 4i17_A Hypothetical protein; T 99.9 3.6E-21 1.2E-25 183.5 24.2 217 46-269 5-224 (228)
66 3ulq_A Response regulator aspa 99.9 2.8E-21 9.7E-26 200.0 24.6 323 46-399 10-370 (383)
67 2ond_A Cleavage stimulation fa 99.9 2.9E-20 9.9E-25 185.9 29.8 224 208-438 33-277 (308)
68 1xi4_A Clathrin heavy chain; a 99.9 1.6E-19 5.5E-24 201.1 37.0 319 54-427 1055-1380(1630)
69 4i17_A Hypothetical protein; T 99.9 4.2E-20 1.4E-24 176.1 27.1 211 159-376 9-222 (228)
70 3q15_A PSP28, response regulat 99.9 1.4E-20 4.8E-25 194.3 22.6 239 193-432 103-366 (378)
71 4gyw_A UDP-N-acetylglucosamine 99.9 6.2E-21 2.1E-25 209.9 20.7 174 77-257 4-177 (723)
72 1hz4_A MALT regulatory protein 99.9 2.5E-19 8.6E-24 184.7 29.5 310 83-434 15-352 (373)
73 3nf1_A KLC 1, kinesin light ch 99.9 3E-21 1E-25 193.3 14.1 244 187-434 23-310 (311)
74 3dra_A Protein farnesyltransfe 99.8 7.3E-19 2.5E-23 171.9 27.9 238 205-442 47-299 (306)
75 1hz4_A MALT regulatory protein 99.8 4.2E-19 1.4E-23 183.0 27.1 280 117-434 15-325 (373)
76 3nf1_A KLC 1, kinesin light ch 99.8 2.1E-20 7.3E-25 187.2 16.7 254 82-365 27-309 (311)
77 3q15_A PSP28, response regulat 99.8 1.7E-19 5.7E-24 186.3 23.8 323 46-398 10-366 (378)
78 3dra_A Protein farnesyltransfe 99.8 3.1E-18 1.1E-22 167.4 29.9 234 171-411 47-302 (306)
79 3qky_A Outer membrane assembly 99.8 2.2E-19 7.7E-24 174.9 21.5 215 185-420 9-250 (261)
80 3qky_A Outer membrane assembly 99.8 3.6E-19 1.2E-23 173.4 22.2 191 44-258 11-228 (261)
81 1qqe_A Vesicular transport pro 99.8 1.1E-19 3.7E-24 180.1 17.9 219 206-439 32-277 (292)
82 1qqe_A Vesicular transport pro 99.8 2.7E-19 9.2E-24 177.2 19.4 213 66-298 3-231 (292)
83 1b89_A Protein (clathrin heavy 99.8 2.1E-20 7.3E-25 187.8 11.1 321 59-429 14-353 (449)
84 2pzi_A Probable serine/threoni 99.8 1.4E-18 4.9E-23 192.5 25.3 182 48-240 394-583 (681)
85 3as5_A MAMA; tetratricopeptide 99.8 2E-18 6.8E-23 158.2 21.3 173 266-438 8-180 (186)
86 4e6h_A MRNA 3'-END-processing 99.8 1.5E-16 5.2E-21 172.8 39.5 388 43-437 61-576 (679)
87 2pzi_A Probable serine/threoni 99.8 6.6E-19 2.3E-23 195.2 20.7 188 185-383 388-583 (681)
88 4ga2_A E3 SUMO-protein ligase 99.8 1.2E-19 4E-24 159.9 11.7 146 272-417 3-149 (150)
89 4e6h_A MRNA 3'-END-processing 99.8 1.7E-15 5.7E-20 164.6 43.2 357 64-434 48-536 (679)
90 1b89_A Protein (clathrin heavy 99.8 1.3E-19 4.3E-24 182.3 9.7 289 92-428 13-308 (449)
91 3urz_A Uncharacterized protein 99.8 2.5E-18 8.6E-23 160.9 17.5 172 47-224 3-190 (208)
92 3urz_A Uncharacterized protein 99.8 1.7E-18 5.8E-23 162.0 16.0 167 269-436 7-191 (208)
93 3as5_A MAMA; tetratricopeptide 99.8 1.5E-17 5.3E-22 152.1 20.7 170 82-258 8-177 (186)
94 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.5E-17 1.5E-21 154.5 23.4 189 47-259 3-218 (225)
95 4ga2_A E3 SUMO-protein ligase 99.8 1.3E-18 4.4E-23 153.2 11.6 144 55-205 4-148 (150)
96 3dss_A Geranylgeranyl transfer 99.8 4.6E-16 1.6E-20 152.7 30.5 198 55-259 36-272 (331)
97 3edt_B KLC 2, kinesin light ch 99.8 4.2E-18 1.4E-22 167.7 16.0 226 203-432 13-282 (283)
98 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.8E-17 1.6E-21 154.3 22.6 209 190-438 3-220 (225)
99 3dss_A Geranylgeranyl transfer 99.8 3.7E-16 1.3E-20 153.3 29.3 227 209-440 48-313 (331)
100 3edt_B KLC 2, kinesin light ch 99.8 5.3E-18 1.8E-22 166.9 15.6 157 95-255 14-199 (283)
101 4gco_A Protein STI-1; structur 99.8 1.3E-17 4.3E-22 141.7 14.9 115 328-442 7-121 (126)
102 4gco_A Protein STI-1; structur 99.8 1.5E-17 5.1E-22 141.2 14.9 121 292-412 5-125 (126)
103 3q7a_A Farnesyltransferase alp 99.7 2.7E-15 9.1E-20 147.7 29.0 187 163-349 60-257 (349)
104 3q7a_A Farnesyltransferase alp 99.7 7.3E-16 2.5E-20 151.7 24.4 244 192-441 55-342 (349)
105 3gyz_A Chaperone protein IPGC; 99.7 8.6E-18 2.9E-22 146.9 8.9 116 321-436 23-138 (151)
106 2ifu_A Gamma-SNAP; membrane fu 99.7 1.6E-16 5.4E-21 158.5 18.3 203 170-399 4-225 (307)
107 2r5s_A Uncharacterized protein 99.7 5.3E-17 1.8E-21 147.4 13.5 168 79-253 3-172 (176)
108 2ifu_A Gamma-SNAP; membrane fu 99.7 8.9E-17 3E-21 160.3 15.9 206 203-440 3-232 (307)
109 3qou_A Protein YBBN; thioredox 99.7 2.9E-16 9.8E-21 154.8 19.2 169 78-253 113-283 (287)
110 2r5s_A Uncharacterized protein 99.7 7.5E-17 2.6E-21 146.4 13.8 164 48-219 6-172 (176)
111 3qou_A Protein YBBN; thioredox 99.7 4.7E-16 1.6E-20 153.2 19.6 168 256-430 114-283 (287)
112 4f3v_A ESX-1 secretion system 99.7 5.9E-17 2E-21 154.2 10.1 220 229-459 11-263 (282)
113 3gyz_A Chaperone protein IPGC; 99.7 9.4E-17 3.2E-21 140.3 10.6 117 286-402 22-138 (151)
114 2vsy_A XCC0866; transferase, g 99.7 6.1E-16 2.1E-20 168.7 19.4 165 61-232 2-169 (568)
115 1p5q_A FKBP52, FK506-binding p 99.7 3.8E-17 1.3E-21 164.8 6.8 185 238-431 78-294 (336)
116 2vgx_A Chaperone SYCD; alterna 99.7 4.4E-16 1.5E-20 136.4 12.2 119 321-439 8-126 (148)
117 4f3v_A ESX-1 secretion system 99.7 3.7E-16 1.3E-20 148.7 12.5 207 48-264 7-246 (282)
118 2fo7_A Synthetic consensus TPR 99.6 1E-14 3.5E-19 125.3 19.3 135 301-435 2-136 (136)
119 3rjv_A Putative SEL1 repeat pr 99.6 2.8E-14 9.6E-19 133.5 22.2 175 209-397 4-197 (212)
120 1p5q_A FKBP52, FK506-binding p 99.6 1E-16 3.5E-21 161.6 5.7 193 60-254 77-294 (336)
121 2vgx_A Chaperone SYCD; alterna 99.6 6.5E-16 2.2E-20 135.3 9.9 120 286-405 7-126 (148)
122 3rjv_A Putative SEL1 repeat pr 99.6 1.9E-14 6.4E-19 134.7 19.7 177 242-433 3-199 (212)
123 2c2l_A CHIP, carboxy terminus 99.6 1.7E-15 5.8E-20 148.7 12.8 196 47-254 3-199 (281)
124 2xcb_A PCRH, regulatory protei 99.6 2.4E-15 8.1E-20 131.0 12.0 119 321-439 5-123 (142)
125 2xcb_A PCRH, regulatory protei 99.6 2.9E-15 1E-19 130.4 10.8 127 287-413 5-131 (142)
126 2c2l_A CHIP, carboxy terminus 99.6 5.8E-15 2E-19 144.8 13.3 198 189-432 2-200 (281)
127 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.5E-14 1.9E-18 131.8 19.3 133 302-437 8-156 (213)
128 3upv_A Heat shock protein STI1 99.6 3.5E-14 1.2E-18 120.7 15.9 112 301-412 5-122 (126)
129 2fo7_A Synthetic consensus TPR 99.6 9.5E-14 3.3E-18 119.1 18.2 133 268-400 3-135 (136)
130 2e2e_A Formate-dependent nitri 99.6 1.1E-14 3.8E-19 132.2 12.8 128 311-438 21-151 (177)
131 3mv2_B Coatomer subunit epsilo 99.6 1.6E-13 5.4E-18 132.3 21.0 188 176-371 85-290 (310)
132 2uy1_A Cleavage stimulation fa 99.6 2.2E-11 7.4E-16 128.7 39.3 371 46-430 12-412 (493)
133 3upv_A Heat shock protein STI1 99.6 3.9E-14 1.3E-18 120.4 14.9 111 332-442 2-118 (126)
134 1dce_A Protein (RAB geranylger 99.6 1.4E-14 4.7E-19 155.6 14.3 194 242-435 46-271 (567)
135 1a17_A Serine/threonine protei 99.6 1.3E-13 4.3E-18 123.4 18.5 132 300-431 13-146 (166)
136 3sz7_A HSC70 cochaperone (SGT) 99.6 6.3E-14 2.2E-18 125.3 14.9 114 331-444 8-121 (164)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.1E-13 3.8E-18 129.7 17.0 151 268-433 8-174 (213)
138 2qfc_A PLCR protein; TPR, HTH, 99.5 3E-13 1E-17 133.8 20.8 174 224-432 74-267 (293)
139 2e2e_A Formate-dependent nitri 99.5 5.1E-14 1.7E-18 127.8 13.7 130 276-405 20-152 (177)
140 2lni_A Stress-induced-phosphop 99.5 1.2E-13 3.9E-18 118.5 15.3 121 297-417 13-133 (133)
141 3mv2_B Coatomer subunit epsilo 99.5 2.3E-13 8E-18 131.2 18.9 246 166-439 22-290 (310)
142 2qfc_A PLCR protein; TPR, HTH, 99.5 2.9E-13 9.9E-18 133.9 20.0 177 78-255 71-267 (293)
143 1dce_A Protein (RAB geranylger 99.5 2.4E-13 8.3E-18 145.9 20.9 168 280-447 43-237 (567)
144 2hr2_A Hypothetical protein; a 99.5 4.4E-14 1.5E-18 121.3 12.0 107 335-441 12-141 (159)
145 3u3w_A Transcriptional activat 99.5 2.1E-13 7.2E-18 134.9 18.7 171 49-219 76-265 (293)
146 2fbn_A 70 kDa peptidylprolyl i 99.5 1.5E-14 5.3E-19 133.9 9.5 151 279-429 17-184 (198)
147 2vyi_A SGTA protein; chaperone 99.5 1.4E-13 4.9E-18 117.3 14.3 122 297-418 9-130 (131)
148 4gcn_A Protein STI-1; structur 99.5 1.6E-13 5.5E-18 116.5 14.4 115 81-196 7-121 (127)
149 3sz7_A HSC70 cochaperone (SGT) 99.5 1.5E-13 5E-18 122.9 14.7 116 297-412 8-123 (164)
150 1hxi_A PEX5, peroxisome target 99.5 1E-13 3.5E-18 116.5 12.7 101 336-436 19-119 (121)
151 3u3w_A Transcriptional activat 99.5 3.4E-13 1.2E-17 133.4 18.5 160 273-432 82-267 (293)
152 1a17_A Serine/threonine protei 99.5 7.8E-13 2.7E-17 118.2 18.8 135 263-397 10-146 (166)
153 4b4t_Q 26S proteasome regulato 99.5 4.6E-13 1.6E-17 140.7 19.0 230 48-295 4-245 (434)
154 4gcn_A Protein STI-1; structur 99.5 2.7E-13 9.1E-18 115.1 13.7 108 191-298 8-115 (127)
155 2lni_A Stress-induced-phosphop 99.5 4.6E-13 1.6E-17 114.6 15.4 116 44-159 12-127 (133)
156 1na0_A Designed protein CTPR3; 99.5 1.4E-12 4.7E-17 110.1 18.0 117 300-416 9-125 (125)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.8E-14 6.3E-19 151.6 7.5 152 278-429 246-413 (457)
158 2fbn_A 70 kDa peptidylprolyl i 99.5 6.7E-14 2.3E-18 129.6 9.7 166 87-252 9-184 (198)
159 3q49_B STIP1 homology and U bo 99.5 5E-13 1.7E-17 115.3 14.5 104 331-434 6-109 (137)
160 3q49_B STIP1 homology and U bo 99.5 9.2E-13 3.2E-17 113.6 15.0 124 294-417 3-131 (137)
161 2hr2_A Hypothetical protein; a 99.5 2.7E-13 9.1E-18 116.4 11.1 108 47-154 10-140 (159)
162 1hxi_A PEX5, peroxisome target 99.5 3.5E-13 1.2E-17 113.2 11.7 102 49-150 18-119 (121)
163 1elw_A TPR1-domain of HOP; HOP 99.5 2.3E-12 8E-17 107.4 16.1 110 302-411 6-115 (118)
164 3rkv_A Putative peptidylprolyl 99.5 5.6E-13 1.9E-17 118.8 12.9 112 301-412 12-142 (162)
165 3rkv_A Putative peptidylprolyl 99.4 8.9E-13 3E-17 117.5 13.3 105 334-438 11-133 (162)
166 3gw4_A Uncharacterized protein 99.4 1.4E-12 4.7E-17 121.0 14.8 157 278-434 4-179 (203)
167 1wao_1 Serine/threonine protei 99.4 2.9E-14 1E-18 150.6 3.6 138 301-438 7-157 (477)
168 2vyi_A SGTA protein; chaperone 99.4 3.9E-12 1.3E-16 108.3 16.4 119 266-384 12-130 (131)
169 2kck_A TPR repeat; tetratricop 99.4 8.6E-13 3E-17 109.0 11.8 107 330-436 2-111 (112)
170 1elw_A TPR1-domain of HOP; HOP 99.4 4.4E-12 1.5E-16 105.7 16.2 110 333-442 3-112 (118)
171 2dba_A Smooth muscle cell asso 99.4 3.5E-12 1.2E-16 111.4 16.2 115 297-411 25-142 (148)
172 3gw4_A Uncharacterized protein 99.4 1.3E-12 4.4E-17 121.2 13.7 162 58-219 2-175 (203)
173 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.2E-13 7.4E-18 143.4 8.8 183 63-247 201-407 (457)
174 2uy1_A Cleavage stimulation fa 99.4 1.1E-10 3.7E-15 123.4 29.2 326 60-428 6-380 (493)
175 2if4_A ATFKBP42; FKBP-like, al 99.4 2.7E-13 9.3E-18 136.6 8.8 157 264-437 177-334 (338)
176 2xev_A YBGF; tetratricopeptide 99.4 6.5E-12 2.2E-16 106.9 15.7 102 337-438 5-112 (129)
177 1na0_A Designed protein CTPR3; 99.4 1.5E-11 5.2E-16 103.5 17.4 64 84-147 11-74 (125)
178 1zu2_A Mitochondrial import re 99.4 9.4E-13 3.2E-17 112.7 9.4 95 348-442 16-131 (158)
179 2dba_A Smooth muscle cell asso 99.4 2.2E-11 7.5E-16 106.3 18.4 113 44-156 24-139 (148)
180 1wao_1 Serine/threonine protei 99.4 8.3E-13 2.9E-17 139.4 10.8 136 266-401 6-154 (477)
181 2xev_A YBGF; tetratricopeptide 99.4 1.3E-11 4.3E-16 105.1 15.8 106 49-154 3-114 (129)
182 1elr_A TPR2A-domain of HOP; HO 99.4 4.6E-12 1.6E-16 107.8 12.4 114 300-414 4-124 (131)
183 1ihg_A Cyclophilin 40; ppiase 99.4 5.6E-12 1.9E-16 128.2 15.0 123 302-424 225-363 (370)
184 2kck_A TPR repeat; tetratricop 99.4 4.2E-12 1.4E-16 104.8 11.1 106 296-401 2-110 (112)
185 1zu2_A Mitochondrial import re 99.3 2.9E-12 9.9E-17 109.7 9.5 89 314-402 16-125 (158)
186 2if4_A ATFKBP42; FKBP-like, al 99.3 3.7E-12 1.3E-16 128.3 11.5 102 301-402 231-333 (338)
187 4b4t_Q 26S proteasome regulato 99.3 3.7E-11 1.3E-15 126.0 19.2 204 193-397 6-245 (434)
188 3k9i_A BH0479 protein; putativ 99.3 3.1E-12 1.1E-16 106.8 8.7 93 347-439 3-98 (117)
189 3k9i_A BH0479 protein; putativ 99.3 2.4E-12 8.2E-17 107.5 7.4 95 312-406 2-99 (117)
190 1elr_A TPR2A-domain of HOP; HO 99.3 2.1E-11 7.3E-16 103.6 13.4 108 333-441 3-117 (131)
191 3ro3_A PINS homolog, G-protein 99.3 1.4E-11 4.9E-16 109.2 12.4 134 301-434 10-161 (164)
192 1ihg_A Cyclophilin 40; ppiase 99.3 2.3E-11 7.8E-16 123.7 15.4 132 259-390 216-363 (370)
193 3ro3_A PINS homolog, G-protein 99.2 1E-10 3.6E-15 103.5 13.4 140 117-257 10-161 (164)
194 2kat_A Uncharacterized protein 99.1 7.2E-10 2.5E-14 91.9 12.4 81 319-399 4-84 (115)
195 2l6j_A TPR repeat-containing p 99.1 4.2E-11 1.4E-15 98.7 4.5 93 334-426 4-102 (111)
196 1na3_A Designed protein CTPR2; 99.1 9.9E-10 3.4E-14 86.5 11.6 84 333-416 8-91 (91)
197 2kat_A Uncharacterized protein 99.1 7E-10 2.4E-14 92.0 11.0 87 351-437 2-88 (115)
198 2l6j_A TPR repeat-containing p 99.1 1.2E-10 4E-15 95.9 5.1 95 47-141 3-103 (111)
199 1na3_A Designed protein CTPR2; 99.0 2.5E-09 8.6E-14 84.1 11.6 84 299-382 8-91 (91)
200 3n71_A Histone lysine methyltr 99.0 2E-09 6.7E-14 112.6 12.5 126 305-430 314-463 (490)
201 2kc7_A BFR218_protein; tetratr 99.0 7.9E-10 2.7E-14 88.8 7.2 91 338-436 4-95 (99)
202 1klx_A Cysteine rich protein B 99.0 2E-08 7E-13 86.0 15.8 88 340-431 31-126 (138)
203 3ma5_A Tetratricopeptide repea 99.0 2E-09 6.8E-14 86.6 8.6 72 364-435 3-74 (100)
204 1klx_A Cysteine rich protein B 98.9 1.7E-08 5.7E-13 86.5 14.3 122 279-410 8-137 (138)
205 3ma5_A Tetratricopeptide repea 98.9 4.6E-09 1.6E-13 84.4 10.2 70 330-399 3-72 (100)
206 3u64_A Protein TP_0956; tetrat 98.9 3.4E-08 1.2E-12 92.5 17.0 108 328-435 146-273 (301)
207 2kc7_A BFR218_protein; tetratr 98.9 1.6E-09 5.5E-14 86.9 6.9 91 51-149 3-94 (99)
208 3n71_A Histone lysine methyltr 98.9 5.9E-09 2E-13 109.0 12.5 128 270-397 313-464 (490)
209 3ly7_A Transcriptional activat 98.8 8.3E-08 2.9E-12 94.1 17.3 144 292-436 186-344 (372)
210 3u64_A Protein TP_0956; tetrat 98.8 7.8E-08 2.7E-12 90.1 15.4 186 64-258 48-273 (301)
211 3ly7_A Transcriptional activat 98.7 1.5E-06 5.3E-11 85.2 22.4 155 73-259 185-344 (372)
212 3bee_A Putative YFRE protein; 98.7 1.7E-07 5.7E-12 73.3 10.2 72 364-435 2-76 (93)
213 1pc2_A Mitochondria fission pr 98.7 1.7E-07 5.8E-12 79.2 10.8 93 349-441 13-110 (152)
214 3bee_A Putative YFRE protein; 98.6 4.3E-07 1.5E-11 71.0 10.9 72 78-149 2-76 (93)
215 1pc2_A Mitochondria fission pr 98.5 8.4E-07 2.9E-11 74.9 12.0 92 317-408 15-111 (152)
216 2v5f_A Prolyl 4-hydroxylase su 98.5 1.7E-06 5.8E-11 69.6 11.3 78 46-123 3-87 (104)
217 3qww_A SET and MYND domain-con 98.4 5.8E-07 2E-11 92.3 10.3 93 346-438 310-423 (433)
218 3qww_A SET and MYND domain-con 98.4 1.2E-06 4.2E-11 89.9 12.6 95 311-405 309-424 (433)
219 3qwp_A SET and MYND domain-con 98.4 6.7E-07 2.3E-11 92.1 10.5 88 310-397 297-400 (429)
220 2v5f_A Prolyl 4-hydroxylase su 98.4 2.3E-06 7.9E-11 68.8 11.5 75 335-409 6-87 (104)
221 3qwp_A SET and MYND domain-con 98.3 3.3E-06 1.1E-10 86.9 12.7 105 48-152 287-412 (429)
222 4g26_A Pentatricopeptide repea 98.2 0.00024 8.3E-09 74.7 24.0 163 273-435 33-210 (501)
223 4g26_A Pentatricopeptide repea 98.1 0.00046 1.6E-08 72.6 23.0 93 161-253 109-203 (501)
224 1nzn_A CGI-135 protein, fissio 98.0 2.7E-05 9.1E-10 63.1 9.8 90 350-439 17-111 (126)
225 1nzn_A CGI-135 protein, fissio 98.0 0.00012 4E-09 59.4 11.9 91 318-408 19-114 (126)
226 4h7y_A Dual specificity protei 97.8 0.00061 2.1E-08 56.3 13.2 67 370-437 63-129 (161)
227 4h7y_A Dual specificity protei 97.7 0.00069 2.4E-08 56.0 12.5 111 294-405 7-131 (161)
228 3ffl_A Anaphase-promoting comp 97.7 0.00036 1.2E-08 59.2 10.7 93 50-142 22-148 (167)
229 3ffl_A Anaphase-promoting comp 97.6 0.00044 1.5E-08 58.7 10.0 61 303-363 23-92 (167)
230 1y8m_A FIS1; mitochondria, unk 97.4 0.0038 1.3E-07 51.3 12.8 76 365-440 36-115 (144)
231 1qsa_A Protein (soluble lytic 97.3 0.22 7.5E-06 53.2 29.3 334 48-430 6-347 (618)
232 1qsa_A Protein (soluble lytic 97.3 0.23 7.7E-06 53.1 28.7 319 70-431 57-410 (618)
233 3o48_A Mitochondria fission 1 97.2 0.0028 9.6E-08 51.4 10.4 74 367-440 39-116 (134)
234 4gns_B Protein CSD3, chitin bi 97.2 0.19 6.6E-06 54.6 27.3 58 160-217 340-397 (754)
235 1y8m_A FIS1; mitochondria, unk 97.2 0.014 4.7E-07 48.1 14.0 78 332-409 37-118 (144)
236 3o48_A Mitochondria fission 1 97.1 0.0045 1.5E-07 50.2 10.6 75 81-155 39-117 (134)
237 3mkq_A Coatomer beta'-subunit; 97.0 0.16 5.4E-06 57.2 25.9 75 161-251 633-707 (814)
238 3mkq_A Coatomer beta'-subunit; 96.8 0.13 4.3E-06 58.0 22.9 44 169-217 664-707 (814)
239 4b4t_P 26S proteasome regulato 96.6 0.18 6.1E-06 51.9 20.8 205 47-254 16-247 (445)
240 3txn_A 26S proteasome regulato 96.6 0.4 1.4E-05 47.8 22.4 100 195-294 103-209 (394)
241 4ady_A RPN2, 26S proteasome re 96.5 1.4 4.9E-05 48.8 30.4 193 195-395 380-587 (963)
242 3txn_A 26S proteasome regulato 96.4 0.14 4.7E-06 51.2 17.4 95 303-397 102-210 (394)
243 4gns_B Protein CSD3, chitin bi 96.0 0.044 1.5E-06 59.5 12.6 112 282-394 265-397 (754)
244 3mkq_B Coatomer subunit alpha; 95.7 0.5 1.7E-05 40.8 15.3 108 47-182 7-114 (177)
245 1zbp_A Hypothetical protein VP 95.7 0.23 7.7E-06 46.0 13.7 59 57-115 6-64 (273)
246 3mkq_B Coatomer subunit alpha; 95.6 0.42 1.4E-05 41.3 14.4 99 93-216 16-114 (177)
247 1zbp_A Hypothetical protein VP 95.6 0.22 7.4E-06 46.1 13.2 60 200-259 6-65 (273)
248 4b4t_P 26S proteasome regulato 95.5 1.3 4.5E-05 45.3 20.5 191 95-293 29-245 (445)
249 3kae_A CDC27, possible protein 95.4 1 3.4E-05 38.0 22.7 189 54-257 8-240 (242)
250 2ff4_A Probable regulatory pro 95.3 0.23 7.8E-06 50.0 14.1 96 49-144 116-233 (388)
251 2ff4_A Probable regulatory pro 94.8 0.38 1.3E-05 48.4 13.8 112 306-430 121-233 (388)
252 3kae_A CDC27, possible protein 94.7 1.7 5.9E-05 36.6 21.3 118 128-260 14-149 (242)
253 4b4t_S RPN3, 26S proteasome re 94.1 0.45 1.6E-05 48.8 12.4 134 55-190 143-303 (523)
254 1ya0_A SMG-7 transcript varian 94.1 0.25 8.6E-06 51.1 10.7 80 301-380 153-232 (497)
255 4ady_A RPN2, 26S proteasome re 93.8 10 0.00035 42.2 24.5 158 92-252 384-551 (963)
256 4b4t_S RPN3, 26S proteasome re 93.6 0.11 3.6E-06 53.3 6.8 127 310-438 146-306 (523)
257 1ya0_A SMG-7 transcript varian 93.6 0.43 1.5E-05 49.3 11.4 86 261-346 147-232 (497)
258 3spa_A Mtrpol, DNA-directed RN 93.2 1.1 3.6E-05 50.1 14.1 96 268-363 129-230 (1134)
259 4fhn_B Nucleoporin NUP120; pro 93.2 3.9 0.00013 47.6 20.1 147 84-252 814-965 (1139)
260 4b4t_R RPN7, 26S proteasome re 93.2 0.44 1.5E-05 48.7 10.7 102 83-185 132-236 (429)
261 3spa_A Mtrpol, DNA-directed RN 93.1 1.2 3.9E-05 49.8 14.2 129 300-436 127-263 (1134)
262 4b4t_R RPN7, 26S proteasome re 91.1 0.94 3.2E-05 46.2 10.2 105 190-295 130-237 (429)
263 3lvg_A Clathrin heavy chain 1; 89.6 2.4E-05 8.3E-10 77.9 -24.0 266 46-355 52-325 (624)
264 4fhn_B Nucleoporin NUP120; pro 89.3 2.9 0.0001 48.7 13.6 98 295-392 837-962 (1139)
265 3lpz_A GET4 (YOR164C homolog); 85.3 27 0.00093 33.6 29.6 146 46-248 10-159 (336)
266 2wpv_A GET4, UPF0363 protein Y 81.2 39 0.0013 32.2 20.4 81 298-396 132-216 (312)
267 2wpv_A GET4, UPF0363 protein Y 81.0 39 0.0013 32.2 26.7 48 47-108 12-59 (312)
268 3lpz_A GET4 (YOR164C homolog); 74.0 65 0.0022 31.0 26.0 27 297-323 133-159 (336)
269 4gq2_M Nucleoporin NUP120; bet 72.1 45 0.0015 37.8 14.4 111 86-221 814-927 (950)
270 3esl_A Checkpoint serine/threo 69.7 58 0.002 28.6 12.0 64 369-433 81-146 (202)
271 4gq2_M Nucleoporin NUP120; bet 66.5 44 0.0015 37.9 12.8 36 403-438 898-934 (950)
272 1wy6_A Hypothetical protein ST 65.4 55 0.0019 26.7 10.1 49 347-395 104-152 (172)
273 2qx5_A Nucleoporin NIC96; mRNA 59.8 1.9E+02 0.0063 31.0 17.7 123 46-183 252-382 (661)
274 2ijq_A Hypothetical protein; s 58.6 52 0.0018 27.7 8.6 65 46-110 30-103 (161)
275 3uzd_A 14-3-3 protein gamma; s 58.5 1.1E+02 0.0037 27.9 14.1 59 48-106 4-64 (248)
276 3esl_A Checkpoint serine/threo 58.1 57 0.002 28.6 9.0 65 334-399 80-146 (202)
277 3lvg_A Clathrin heavy chain 1; 57.1 0.035 1.2E-06 55.8 -12.6 175 47-246 143-325 (624)
278 1o9d_A 14-3-3-like protein C; 56.7 1.2E+02 0.0041 27.8 15.4 61 47-107 7-71 (260)
279 2ijq_A Hypothetical protein; s 55.9 88 0.003 26.3 9.5 67 120-186 36-104 (161)
280 2qx5_A Nucleoporin NIC96; mRNA 55.3 2.2E+02 0.0075 30.4 16.0 31 404-435 538-570 (661)
281 3ubw_A 14-3-3E, 14-3-3 protein 52.9 1.4E+02 0.0047 27.4 17.1 31 192-222 32-62 (261)
282 3t5v_B Nuclear mRNA export pro 52.6 21 0.00071 36.2 6.2 16 558-573 404-419 (455)
283 1hym_A CMTI-V, hydrolyzed cucu 52.1 8.6 0.00029 24.3 2.1 27 545-571 8-34 (45)
284 3ax2_A Mitochondrial import re 52.1 42 0.0014 23.8 5.9 28 53-80 22-49 (73)
285 2crb_A Nuclear receptor bindin 51.7 17 0.0006 26.9 3.9 28 48-75 15-42 (97)
286 3ax2_A Mitochondrial import re 51.2 37 0.0013 24.1 5.5 28 87-114 22-49 (73)
287 3ubw_A 14-3-3E, 14-3-3 protein 51.0 1.5E+02 0.0051 27.2 17.5 61 47-107 30-92 (261)
288 2npm_A 14-3-3 domain containin 51.0 1.5E+02 0.0051 27.2 14.9 29 193-221 30-58 (260)
289 3t5v_B Nuclear mRNA export pro 49.9 1.2E+02 0.0041 30.7 11.3 61 197-257 182-253 (455)
290 2br9_A 14-3-3E, 14-3-3 protein 49.7 1.5E+02 0.005 26.8 15.6 46 48-93 5-51 (234)
291 2cwy_A Hypothetical protein TT 49.6 80 0.0027 23.7 7.9 63 121-186 6-68 (94)
292 2w2u_A Hypothetical P60 katani 48.0 48 0.0016 24.2 6.0 21 165-185 27-47 (83)
293 2cfu_A SDSA1; SDS-hydrolase, l 47.2 29 0.00098 37.4 6.7 49 48-96 449-497 (658)
294 2w2u_A Hypothetical P60 katani 47.1 75 0.0025 23.2 6.9 30 47-76 18-47 (83)
295 2wvi_A Mitotic checkpoint seri 46.7 1.3E+02 0.0045 25.3 11.1 48 387-434 79-128 (164)
296 2v6y_A AAA family ATPase, P60 45.0 58 0.002 23.8 6.1 18 168-185 22-39 (83)
297 1wfd_A Hypothetical protein 15 44.9 29 0.00098 26.1 4.5 30 47-76 14-43 (93)
298 2vkj_A TM1634; membrane protei 44.9 41 0.0014 24.6 4.9 31 47-77 52-82 (106)
299 1wy6_A Hypothetical protein ST 44.3 1.3E+02 0.0044 24.6 15.6 81 279-363 74-154 (172)
300 1om2_A Protein (mitochondrial 43.6 72 0.0025 24.0 6.3 30 160-189 23-52 (95)
301 1o9d_A 14-3-3-like protein C; 43.2 2E+02 0.0068 26.4 14.2 28 194-221 11-38 (260)
302 2iuy_A Avigt4, glycosyltransfe 42.4 2.2E+02 0.0075 27.0 12.0 127 487-636 3-146 (342)
303 2crb_A Nuclear receptor bindin 42.1 53 0.0018 24.4 5.1 32 153-184 11-42 (97)
304 3uzd_A 14-3-3 protein gamma; s 41.2 2.1E+02 0.0071 26.0 15.2 19 412-430 184-202 (248)
305 3t5x_A PCI domain-containing p 40.9 55 0.0019 28.9 6.4 29 119-147 17-45 (203)
306 4a5x_A MITD1, MIT domain-conta 40.8 40 0.0014 24.9 4.6 30 47-76 15-44 (86)
307 3re2_A Predicted protein; meni 40.5 1.6E+02 0.0056 28.3 9.5 15 62-76 14-28 (472)
308 2v6y_A AAA family ATPase, P60 40.3 1E+02 0.0036 22.4 7.2 29 48-76 11-39 (83)
309 2cwy_A Hypothetical protein TT 39.1 1.2E+02 0.0041 22.7 7.5 61 231-294 7-67 (94)
310 3lxu_X Tripeptidyl-peptidase 2 37.9 2.5E+02 0.0087 32.7 12.5 38 57-94 1116-1153(1354)
311 3re2_A Predicted protein; meni 36.8 2.1E+02 0.0072 27.6 9.6 45 353-397 276-325 (472)
312 3ksm_A ABC-type sugar transpor 36.6 66 0.0022 29.6 6.8 43 488-530 1-43 (276)
313 1om2_A Protein (mitochondrial 36.5 80 0.0028 23.7 5.6 30 269-298 23-52 (95)
314 3t5x_A PCI domain-containing p 36.3 1E+02 0.0035 27.1 7.5 35 82-116 14-48 (203)
315 2ynq_A ESSB; membrane protein, 36.0 1.9E+02 0.0065 24.1 8.9 89 48-142 8-99 (161)
316 1wfd_A Hypothetical protein 15 35.9 31 0.0011 25.9 3.4 13 348-360 29-41 (93)
317 2gek_A Phosphatidylinositol ma 35.5 14 0.00049 36.7 2.0 186 484-684 17-236 (406)
318 3iqu_A 14-3-3 protein sigma; s 35.4 2.5E+02 0.0085 25.3 17.1 49 242-293 150-203 (236)
319 2rpa_A Katanin P60 ATPase-cont 35.3 32 0.0011 24.8 3.2 30 48-77 12-41 (78)
320 2ahq_A Sigma-54, RNA polymeras 35.3 21 0.00071 25.6 2.2 37 530-570 19-55 (76)
321 3iqu_A 14-3-3 protein sigma; s 35.0 2.5E+02 0.0087 25.2 16.9 62 47-108 7-70 (236)
322 2npm_A 14-3-3 domain containin 34.3 2.7E+02 0.0094 25.4 16.0 60 47-106 27-91 (260)
323 3jy6_A Transcriptional regulat 33.6 1.1E+02 0.0039 28.0 8.0 84 485-569 5-88 (276)
324 3gyb_A Transcriptional regulat 33.3 79 0.0027 29.1 6.8 99 485-614 3-101 (280)
325 3kjx_A Transcriptional regulat 32.2 3.2E+02 0.011 25.9 11.3 86 484-569 65-150 (344)
326 3u84_A Menin; MLL, JUND, ledgf 31.9 2.5E+02 0.0085 27.6 9.4 18 60-77 12-29 (550)
327 2v6x_A Vacuolar protein sortin 31.3 63 0.0021 23.7 4.4 30 47-76 12-41 (85)
328 4gq4_A Menin; tumor suppressor 31.2 3.6E+02 0.012 26.6 10.5 20 58-77 15-34 (489)
329 3l6u_A ABC-type sugar transpor 31.0 70 0.0024 29.8 6.0 42 485-526 6-47 (293)
330 2cpt_A SKD1 protein, vacuolar 30.5 55 0.0019 25.8 4.1 30 47-76 17-46 (117)
331 3o1i_D Periplasmic protein TOR 30.5 79 0.0027 29.5 6.3 43 485-527 3-45 (304)
332 4b4t_O 26S proteasome regulato 29.8 3.3E+02 0.011 26.8 10.8 61 370-430 129-197 (393)
333 3tr9_A Dihydropteroate synthas 29.7 1.4E+02 0.0049 28.2 7.6 58 545-603 105-163 (314)
334 3bu8_A Telomeric repeat-bindin 29.7 2.8E+02 0.0094 24.5 8.5 73 132-204 88-161 (235)
335 3u84_A Menin; MLL, JUND, ledgf 29.7 3E+02 0.01 27.1 9.5 45 353-397 298-347 (550)
336 2rgy_A Transcriptional regulat 29.3 1.3E+02 0.0044 27.9 7.6 85 485-569 6-93 (290)
337 4aez_C MAD3, mitotic spindle c 29.2 3.1E+02 0.01 24.4 12.1 50 385-434 131-182 (223)
338 2rpa_A Katanin P60 ATPase-cont 28.6 61 0.0021 23.4 3.7 26 85-110 15-40 (78)
339 3kcq_A Phosphoribosylglycinami 27.7 2.5E+02 0.0084 24.9 8.4 84 485-579 6-94 (215)
340 1fmt_A Methionyl-tRNA FMet for 27.5 1.4E+02 0.0046 28.5 7.2 75 486-572 2-87 (314)
341 3da8_A Probable 5'-phosphoribo 27.2 2.1E+02 0.0072 25.4 7.9 83 484-578 9-100 (215)
342 2cpt_A SKD1 protein, vacuolar 27.2 96 0.0033 24.4 5.0 14 380-393 30-43 (117)
343 4gq4_A Menin; tumor suppressor 26.3 4.6E+02 0.016 25.9 10.3 59 353-411 283-352 (489)
344 4b4t_O 26S proteasome regulato 25.5 2.6E+02 0.0089 27.5 9.2 93 89-184 83-196 (393)
345 3clk_A Transcription regulator 24.3 1.1E+02 0.0036 28.5 5.9 39 485-523 6-44 (290)
346 3k4h_A Putative transcriptiona 23.6 1E+02 0.0036 28.5 5.7 41 485-525 6-51 (292)
347 3brq_A HTH-type transcriptiona 23.4 1.2E+02 0.004 28.2 6.0 84 485-569 17-104 (296)
348 2yhe_A SEC-alkyl sulfatase; hy 28.7 18 0.0006 39.0 0.0 51 48-98 461-511 (668)
349 3rot_A ABC sugar transporter, 22.7 1E+02 0.0035 28.7 5.5 40 486-525 2-41 (297)
350 3bu8_A Telomeric repeat-bindin 22.7 3.5E+02 0.012 23.9 7.9 57 282-338 88-152 (235)
351 3tji_A Mandelate racemase/muco 22.6 68 0.0023 32.2 4.3 36 565-600 221-256 (422)
352 3lxu_X Tripeptidyl-peptidase 2 22.3 9.8E+02 0.034 27.9 16.7 31 281-311 1122-1152(1354)
353 3egc_A Putative ribose operon 22.2 81 0.0028 29.3 4.6 41 485-525 6-46 (291)
354 3d8u_A PURR transcriptional re 21.9 86 0.003 28.7 4.7 84 486-569 2-85 (275)
355 3l49_A ABC sugar (ribose) tran 21.6 1.7E+02 0.0059 26.9 6.9 86 485-571 3-91 (291)
356 2cfu_A SDSA1; SDS-hydrolase, l 21.5 1.2E+02 0.0042 32.4 6.3 52 115-166 448-499 (658)
357 3rr1_A GALD, putative D-galact 21.5 76 0.0026 31.6 4.3 8 607-614 252-259 (405)
358 3bbl_A Regulatory protein of L 21.4 1.7E+02 0.006 26.9 6.8 83 486-568 3-89 (287)
359 4a5x_A MITD1, MIT domain-conta 21.4 1.4E+02 0.0048 21.9 4.6 21 410-430 24-44 (86)
360 3brs_A Periplasmic binding pro 21.2 3.2E+02 0.011 24.9 8.7 41 485-525 3-45 (289)
361 2dl1_A Spartin; SPG20, MIT, st 21.1 69 0.0024 25.1 3.0 32 384-430 19-50 (116)
362 2fep_A Catabolite control prot 21.0 1.7E+02 0.0059 27.0 6.7 41 485-525 14-54 (289)
363 3t6c_A RSPA, putative MAND fam 20.8 1.1E+02 0.0038 30.8 5.4 45 556-600 227-274 (440)
364 2o8p_A 14-3-3 domain containin 20.6 4.6E+02 0.016 23.4 20.2 176 228-418 6-224 (227)
365 3h75_A Periplasmic sugar-bindi 20.2 1.4E+02 0.0048 28.6 6.0 39 487-525 3-42 (350)
366 4a1g_A Mitotic checkpoint seri 20.1 3.7E+02 0.013 22.2 11.4 46 319-364 84-131 (152)
367 3mv2_A Coatomer subunit alpha; 20.1 5.6E+02 0.019 24.3 14.6 30 48-77 114-143 (325)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=1.6e-83 Score=706.45 Aligned_cols=370 Identities=25% Similarity=0.384 Sum_probs=320.1
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (687)
.++..+|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44555666666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (687)
+|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|.+.++
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhhhhh----HHHHhhhccCCChHHHHHHHHHHHHHHhh----h-ccCcCCCCCCCCCCCCeEEEEecCCc
Q 005626 427 QCLKIDPDSRNAGQN----RLLAMNYINEGHDDKLFEAHRDWGKRFMR----L-YSQYTSWDNTKDPERPLVIGYVSPDY 497 (687)
Q Consensus 427 ~al~~~p~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lriGy~S~df 497 (687)
+++++.|+....... ....+.+ ...........++++..... . .++...+...+.+++||||||||+||
T Consensus 170 kal~l~~~~~~~~~l~~~~~~~~l~~--~~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~df 247 (723)
T 4gyw_A 170 KLVSIVADQLEKNRLPSVHPHHSMLY--PLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDF 247 (723)
T ss_dssp HHHHHHHHHHHTTCCCSSCTTGGGGS--CCCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESCS
T ss_pred HHHHhChhHHhhccCcccchhhhhhh--hcCHHHHHHHHHHHHHhhhhhhhcccCccccCccccccccccceeeeechhh
Confidence 999998765432110 0011111 11121111222233322211 1 11222223345568899999999999
Q ss_pred ccchHHHHHHhhccccCCCceEEEEEecCCC-CChHhHHHHHHhhhcCCceEeCCCC-CHHHHHHHHHhCCCcEEEecCC
Q 005626 498 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELTG 575 (687)
Q Consensus 498 ~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~g 575 (687)
++|||++|+.++|++|||++|||++|++++. .|..+.+++..+ ++|+++.++ +|.+++++|++|+|||||||+|
T Consensus 248 ~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g 323 (723)
T 4gyw_A 248 GNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA----NHFIDLSQIPCNGKAADRIHQDGIHILVNMNG 323 (723)
T ss_dssp SSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHS----SEEEEGGGCCCHHHHHHHHHHTTCSEEEESCS
T ss_pred ccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhh----ccccccccCCcHHHHHHHHHhccceeEEeccC
Confidence 9999999999999999999999999998864 567788777765 899999998 7999999999999999999999
Q ss_pred CCCCCcchhhccCCCceEEecccCCCCCCCCCccEEEecCCCCCcccccccccceeecCCCccccCC
Q 005626 576 HTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTP 642 (687)
Q Consensus 576 ~t~~~r~~~~a~r~APvq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~ 642 (687)
||.++|+.||++|||||||+|||||+|||+++|||+|+|++++|++.+.+|||||||||+||+|++|
T Consensus 324 ~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~ 390 (723)
T 4gyw_A 324 YTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 390 (723)
T ss_dssp SBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCH
T ss_pred CCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=100.00 E-value=1.4e-53 Score=441.94 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=191.5
Q ss_pred hhhHHHHhhhccCCChHHHHHHHHHHHHHHh--h-hccCcCCCCCCCCCCCCeEEEEecCCcccchHHHHHHhhccccCC
Q 005626 439 GQNRLLAMNYINEGHDDKLFEAHRDWGKRFM--R-LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY 515 (687)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~lriGy~S~df~~h~v~~~~~~~~~~~d~ 515 (687)
..+..+.+.|...-+.-+..+...++-++.. . .....+....++.++++++|||+|++|++|+|+.++.+++++ ||
T Consensus 224 ~~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR 302 (631)
T 3q3e_A 224 SHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AR 302 (631)
T ss_dssp HHHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HT
T ss_pred ccceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hh
Confidence 3445566677655444444443444444322 1 111111112233457889999999999999999999999987 99
Q ss_pred CceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCC----HHHHHHHHHhCCCcEEEecCCCCCCCcchhhccCCCc
Q 005626 516 QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (687)
Q Consensus 516 ~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~i~~d~idilvdl~g~t~~~r~~~~a~r~AP 591 (687)
++|||+||+ ++..|+.| |+. +|+|+++.+++ +++++++|++|+|||||||+|||.+.++.++++||||
T Consensus 303 ~~FEV~~Ys-~~~~D~~t---r~~----~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAP 374 (631)
T 3q3e_A 303 EHFYLIGLG-SPSVDQAG---QEV----FDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAP 374 (631)
T ss_dssp TTSEEEEEE-CTTSCHHH---HTT----SSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSS
T ss_pred hcEEEEEEe-CCCCCHHH---Hhc----CcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCch
Confidence 999999999 77788887 332 48999999999 8899999999999999999999977777777799999
Q ss_pred eEEecccCCCCCCCCCccEEEecCCCCCcccccccccceeecCCCccccCCCCCCCCCCCCCCCC-CCCeEEEecCCCCC
Q 005626 592 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT-NGFITFGSFNNLAK 670 (687)
Q Consensus 592 vq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~fn~~~k 670 (687)
|||+|||||+|||+++|||+|+|++++| .+.+|||||+|||+||+||+|+...|.+.+.|.++ +|+|||||||+++|
T Consensus 375 VQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~K 452 (631)
T 3q3e_A 375 IQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMK 452 (631)
T ss_dssp EEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEECSTT
T ss_pred heEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccCCcccCCccccccCCcCCCeEEEEECCcccc
Confidence 9999999999999999999999998775 48899999999999999999998887776666666 58999999999999
Q ss_pred CCHHHHHHHhhhhhc
Q 005626 671 VLVRSYLCLDKCSTC 685 (687)
Q Consensus 671 ~~~~~~~~w~~~~~~ 685 (687)
|+|+++++|++|+.+
T Consensus 453 i~p~~l~~WarIL~~ 467 (631)
T 3q3e_A 453 LNPYFLEALKAIRDR 467 (631)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999975
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-43 Score=369.88 Aligned_cols=379 Identities=27% Similarity=0.375 Sum_probs=363.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 005626 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (687)
+.+|..+++.|++++|+..++++++.+|++..++..+|.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (687)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (687)
+++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998776 7778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHH
Q 005626 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (687)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (687)
..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++...+..++ .++...|++++|+..+++
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-------~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG-------NVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH-------HHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877655554 445557799999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (687)
Q Consensus 292 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (687)
++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+++.++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~ 444 (687)
..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|++..++.++..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877544
No 4
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=2.1e-43 Score=386.20 Aligned_cols=389 Identities=19% Similarity=0.204 Sum_probs=318.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 005626 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 435 (687)
++++++|++..++.++|.++...|++++|++.|+++++.+|++..++.++|.++..+ |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhhhhHHHHhhhccCCChHHHHHHHHHHHHH-HhhhccCcCCCCCCCCCCCCeEEEEecCCcccchHHHHHHhhccc--
Q 005626 436 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR-FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 512 (687)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lriGy~S~df~~h~v~~~~~~~~~~-- 512 (687)
...+..+. ..+.+......+.|..+ +.....+. ...+..+++++||||++++|..|++..++..++++
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 76654321 33444444445555443 33222221 12333457899999999999999999999999999
Q ss_pred cCCCceEEEEEecCCC-CChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCcchhhccCCCc
Q 005626 513 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (687)
Q Consensus 513 ~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~r~~~~a~r~AP 591 (687)
|++.+|||++|+.++. .+..+.+++.. . .|+++.+++..++++.|+++++||++++.|||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQA----S-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHHT----S-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHhc----C-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999987653 46677666653 2 6888888889999999999999999999999999999999999999
Q ss_pred eEEecccCCCCCCCCCccEEEecCCCCCcccccccccceeecCCCccccCCCCCCCCCCCCC-----CCCCCCeEEEecC
Q 005626 592 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTP-----ALTNGFITFGSFN 666 (687)
Q Consensus 592 vq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~-----~~~~~~~~f~~fn 666 (687)
||++|+|||.|+|++.+||+++|.++.|.+....|.|++..+|+ +|.|++..+++.+.+ +++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn---~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQG---AFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSS---CSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCC---cCCCCCCCCCCCCCCCccccCCCCCCEEEEeCC
Confidence 99999999999999999999999999998888889999999999 455654333322222 2566778889999
Q ss_pred CCCCCCHHHHHHHhhhhh
Q 005626 667 NLAKVLVRSYLCLDKCST 684 (687)
Q Consensus 667 ~~~k~~~~~~~~w~~~~~ 684 (687)
...|-.+..+.+|.+++.
T Consensus 385 ~~~K~~~~li~a~~~l~~ 402 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLR 402 (568)
T ss_dssp CGGGCCHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 888999999999999864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-40 Score=344.25 Aligned_cols=359 Identities=26% Similarity=0.381 Sum_probs=343.5
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
+.+...+..++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (687)
++...|++++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999998776 677888888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++...+..++.++ ...|++++
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-------~~~g~~~~ 255 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY-------YEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH-------HHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH-------HHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999877666555554 44679999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005626 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (687)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (687)
|++..++..+|.++...|++++|+..|+++++++|++..+++++|.++..+|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999998874
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=343.92 Aligned_cols=387 Identities=16% Similarity=0.119 Sum_probs=356.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
.++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------------------------------------------
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECL-------------------------------------------------- 156 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------------------------------------------------- 156 (687)
...|++++|+..|++++...|.+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999988543321111
Q ss_pred ----------------------HHHHHHhHHHHHH---cCChHHHHHHHHHHHh-----h--C-------CCCHHHHHHH
Q 005626 157 ----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYNL 197 (687)
Q Consensus 157 ----------------------a~~~~~lg~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~l 197 (687)
...+..+|..+.. .|++++|+..|+++++ . + |....++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 3445666666665 8999999999999999 5 3 4457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhh
Q 005626 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (687)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~ 277 (687)
|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..++++++..|.+...+..++.++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------- 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF------- 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-------
Confidence 99999999999999999999999999 9999999999999999999999999999999998776655555544
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (687)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 358 QMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 358 ~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
+++++..|+++. ++..+|.++.. .|++++|+..++++++..|++..++..+|.++...|++++|...|+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888855 99999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChhhhhhH
Q 005626 429 LKIDPDSRNAGQNR 442 (687)
Q Consensus 429 l~~~p~~~~a~~~~ 442 (687)
++++|+++.++..+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999998887654
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.1e-37 Score=337.17 Aligned_cols=386 Identities=16% Similarity=0.158 Sum_probs=337.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
.++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHH---------------------------------------------------
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAEC--------------------------------------------------- 155 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------------------------------------- 155 (687)
...|++++|+..|+ ++...|+.......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999995 77777764432110
Q ss_pred -------------HHHHHHHh-----HHHHHHcCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 005626 156 -------------LAIVLTDL-----GTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDTA 210 (687)
Q Consensus 156 -------------la~~~~~l-----g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A 210 (687)
+...+..+ +......|++++|+..|+++++.+|++.. ++..+|.++...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 00011111 23334446899999999999999999855 577888999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHH
Q 005626 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (687)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~ 290 (687)
+..++++++.+|. ..++..+|.++...|++++|+..++++++..|++...+..++.++. ..|++++|+..++
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-------ILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------HTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999998876655555554 4679999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 005626 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ- 369 (687)
Q Consensus 291 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 369 (687)
++++..|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++..
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999776543
Q ss_pred -----HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 370 -----SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 370 -----~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.+..+|.++... |++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|+
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 467778999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhh
Q 005626 435 SRNAGQN 441 (687)
Q Consensus 435 ~~~a~~~ 441 (687)
+......
T Consensus 495 ~~~~~~~ 501 (537)
T 3fp2_A 495 MDEKLQA 501 (537)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 8877543
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-36 Score=334.00 Aligned_cols=388 Identities=17% Similarity=0.150 Sum_probs=280.2
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHh---------------
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------- 110 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------- 110 (687)
.....+..++..+.+.|++++|+..|++++...|+. ..++.++.++...|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 355667778888888888888888888887776643 4556666666666666666666665521
Q ss_pred ---------------cCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 111 ---------------LDPQN-------------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (687)
Q Consensus 111 ---------------~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 156 (687)
..|.. ..++..+|.+|...|++++|+..|+++++.+|++...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 23443 77899999999999999999999999999999887764433
Q ss_pred H----------------------------------------------------------------HHHHHhHHHHHHcCC
Q 005626 157 A----------------------------------------------------------------IVLTDLGTSLKLAGN 172 (687)
Q Consensus 157 a----------------------------------------------------------------~~~~~lg~~~~~~g~ 172 (687)
+ .++..++..+...|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 2 134445666677777
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (687)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (687)
+++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|++++|++.|++++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005626 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (687)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (687)
+..|++...+..++.++. ..|++++|++.|+++++..|++..++..++.++...|++++|++.|+++++..|.
T Consensus 401 ~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSFA-------IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHCTTCHHHHHHHHHHHH-------HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777776655544444433 3557777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
++.++..+|.++...|++++|++.|+++++. +|+. ..++..+|.++...|++++|+..++++++..|+++.++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 7777777777777777777777777777766 4443 56777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
..+|.+|...|++++|.++|+++++++|+++.++..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777777777777777777777777777777666544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=6.6e-36 Score=317.74 Aligned_cols=335 Identities=16% Similarity=0.177 Sum_probs=281.3
Q ss_pred cccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
..+.++..++.+|..++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH-----HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (687)
|.++...|++++|+..|+++++..|++. ..+..++.+ +..+|..+...|++++|+..|+++++..|.+..++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999988 776665554 66778889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-----H
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA-----L 269 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~-----~ 269 (687)
..+|.+|...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+..+ .
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765544221 2
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
..++..+...|++++|+..|+++++..|.++. .+..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33355555566677777777777766666533 56666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (687)
..|++++|+..|+++++++|+++.++..++.+
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 66666666666666666666666666666644
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-35 Score=322.42 Aligned_cols=372 Identities=17% Similarity=0.082 Sum_probs=302.7
Q ss_pred CCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 005626 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL--- 156 (687)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--- 156 (687)
.+...+..++..+...|++++|+..|++++...|+. ..+..++.++...|++++|+..|++++.. +.+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467789999999999999999999999999998855 67788999999999999999998887543 2223222222
Q ss_pred ----------------------------------------HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---
Q 005626 157 ----------------------------------------AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--- 193 (687)
Q Consensus 157 ----------------------------------------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--- 193 (687)
..++..+|.++...|++++|+..|+++++.+|++..+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 3457778889999999999999999999988865544
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHcC
Q 005626 194 --------------------------------------------------------------------YYNLGVVYSELM 205 (687)
Q Consensus 194 --------------------------------------------------------------------~~~la~~~~~~g 205 (687)
+..++.++...|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 444555566666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHH
Q 005626 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A 285 (687)
++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|++...+. .++..+...|++++|
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL-------AVGIYYLCVNKISEA 392 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH-------HHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH-------HHHHHHHHhccHHHH
Confidence 6666666666666666666666666666666666666666666666666666554444 445555667899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
+..|+++++..|.+..++..++.++...|++++|++.|+++++..|++..++..+|.++...|++++|+++|+++++..|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
.++.++..+|.++...|++++|++.|+++++. +|+. ..++..+|.++...|++++|++.|+++++++|++..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999998 6664 7899999999999999999999999999999998877
Q ss_pred hhhHHHHhhhccCCChHHHHHHHH
Q 005626 439 GQNRLLAMNYINEGHDDKLFEAHR 462 (687)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~ 462 (687)
+.. ++..|...|+.+++.+..+
T Consensus 553 ~~~--l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 553 HTA--IALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHH--HHHHHHHTTCHHHHHHHHH
T ss_pred HHH--HHHHHHHhCCHHHHHHHHH
Confidence 655 4455666777766655444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.1e-35 Score=312.57 Aligned_cols=359 Identities=17% Similarity=0.153 Sum_probs=316.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (687)
...+...+.+++..+|.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCCHH
Q 005626 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNL------------GVVYSELMQYD 208 (687)
Q Consensus 144 ~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~ 208 (687)
+.+|++..+ +..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|+++
T Consensus 88 ~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 88 QLKMDFTAA-------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hcCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999998665 77788888899999999999999999999988 776655 66799999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHH
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~ 288 (687)
+|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++.. .|++++|+..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~ 233 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-------LGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-------TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987766665555544 6799999999
Q ss_pred HHHHHHhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHH
Q 005626 289 YKKALYYNWHYADAMYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDK 352 (687)
Q Consensus 289 ~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 352 (687)
+++++...|++...+..+ |.++...|++++|+..|+++++..|+++ ..+..+|.++...|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999887666 9999999999999999999999999985 478999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcC----
Q 005626 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------------YRDAG---- 416 (687)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g---- 416 (687)
|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+ |..+|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999955 44455
Q ss_pred -CHHHHHHHHHH-HHhcCCCCh
Q 005626 417 -SISLAIDAYEQ-CLKIDPDSR 436 (687)
Q Consensus 417 -~~~~A~~~~~~-al~~~p~~~ 436 (687)
+.+++.+.|++ +++..|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 56778888886 888888754
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.7e-34 Score=294.07 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=294.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH-----HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 127 KDEGRLVEAAESYHKALSADP---SYKPAAECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (687)
...|++++|+..|+++++..| ++...+..++. .+..+|.++...|++++|+..++++++..|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 77776655532 2455688999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------- 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------- 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999876543322211
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAV 354 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~ 354 (687)
.......+|.++...|++++|+..++++++..|++.. ++..+|.++...|++++|+
T Consensus 233 --------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 233 --------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1233455677777777777777777777777777653 3556778888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005626 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (687)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (687)
..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888887777777776654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.3e-33 Score=286.13 Aligned_cols=329 Identities=16% Similarity=0.132 Sum_probs=299.8
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 160 (687)
+++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++... +
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------R 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999998765 7
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNL------------GVVYSELMQYDTALGCYEKAALERPMYA 225 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (687)
..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..++++++..|.++
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 7788888889999999999999999999 888888777 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005626 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (687)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 305 (687)
.++..+|.++...|++++|+..++++++..|++...+..++.++.. .|++++|+..++++++..|++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-------LGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999999999999999998766665555554 679999999999999999998886655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHc
Q 005626 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQ 381 (687)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~ 381 (687)
+..+. .......+|.++...|++++|+..++++++..|+++. ++..+|.++...
T Consensus 228 ~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 228 YKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 54332 1345566799999999999999999999999999874 467899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 005626 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (687)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~ 445 (687)
|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887665433
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=304.96 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=330.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC-----------
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----------- 115 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 115 (687)
+...++.+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++..|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 005626 116 --------------------------------------------------------------------ACAHTHCGILYK 127 (687)
Q Consensus 116 --------------------------------------------------------------------~~~~~~la~~~~ 127 (687)
...+..+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777888777
Q ss_pred H---cCCHHHHHHHHHHHHh-----c--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005626 128 D---EGRLVEAAESYHKALS-----A--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (687)
Q Consensus 128 ~---~g~~~~A~~~~~~al~-----~--~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (687)
. .|++++|+..|+++++ . .|++.........++..+|.++...|++++|+..++++++.+|. ..++..+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l 276 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYM 276 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHH
Confidence 6 8999999999999999 6 77776555566778999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhh
Q 005626 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (687)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~ 277 (687)
|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++...+. .+|.++.
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~l~~~~~ 349 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI-------QLACLAY 349 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH-------HHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH-------HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876544 4555566
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cC
Q 005626 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE------ACNNLGVIYKD---RD 348 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g 348 (687)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++.. ++..+|.++.. .|
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 6789999999999999999999999999999999999999999999999999888755 99999999999 99
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (687)
++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+.
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887764
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=302.89 Aligned_cols=381 Identities=14% Similarity=0.050 Sum_probs=305.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcC-----
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEK---------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD----- 112 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 112 (687)
.+..+..+|.++..+|++++|++.|+++++. +|.....+.++|.+|..+|++++|+.++++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3455667999999999999999999999875 56677889999999999999999999999999863
Q ss_pred ---CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005626 113 ---PQNACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (687)
Q Consensus 113 ---p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (687)
+..+.++..+|.++... +++++|+.+|+++++++|+++..+..++.++..+ ...++.++|++.++++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l----~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL----DNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH----HHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhcC
Confidence 35677888888777664 5799999999999999999998866555544433 35688899999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005626 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (687)
Q Consensus 188 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (687)
|++..++..+|..+.. .+++++|++++++++..+|....++..+|.++...|++++|+..++++++..|++..++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999998877665 467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchh------------hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005626 264 NMAIALTDLGTK------------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (687)
Q Consensus 264 ~l~~~~~~l~~~------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 331 (687)
.++.++...+.. ....+.+++|+..++++++.+|....++..+|.++...|++++|+.+|++++++.+
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 888877554322 22234578899999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 005626 332 HCAE---ACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (687)
Q Consensus 332 ~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (687)
++.. ++..+|.+ +...|++++|+..|++++++.|++..... ....+...+++++..+|+++.++.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7643 45666654 45789999999999999999999865432 2345667888999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
+|.+|..+|++++|+++|++|+++.|.++.+...
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999999887654
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.9e-33 Score=300.31 Aligned_cols=353 Identities=17% Similarity=0.165 Sum_probs=312.0
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH------
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA------ 118 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 118 (687)
+.++..+..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+ ++..+|+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999995 77766654322
Q ss_pred --------------------------------------------------------------HHHH--------HHHHHH
Q 005626 119 --------------------------------------------------------------HTHC--------GILYKD 128 (687)
Q Consensus 119 --------------------------------------------------------------~~~l--------a~~~~~ 128 (687)
...+ +.....
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1111 122223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (687)
.|++++|+..|+++++..|++...+..++.++..+|.++...|++++|+..++++++.+|+ ..++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 3589999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHH
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~ 288 (687)
+|+..++++++..|+++.++..+|.++...|++++|+..++++++..|++...+..++.++. ..|++++|+..
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~ 366 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-------KQGKFTESEAF 366 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH-------HTTCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876665555554 46799999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc----------CCHHH
Q 005626 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDR----------DNLDK 352 (687)
Q Consensus 289 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~ 352 (687)
++++++..|++..++..+|.++...|++++|+..|+++++..|++. ..+..+|.++... |++++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 9999999999999999999999999999999999999999876553 3466778899998 99999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005626 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (687)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (687)
|+.+|+++++.+|++..++..+|.++...|++++|+..|++++++.|+......
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999877654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=264.66 Aligned_cols=301 Identities=19% Similarity=0.189 Sum_probs=227.7
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
+.+.+.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005626 125 LYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (687)
Q Consensus 125 ~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (687)
++...| ++++|+..++++++..|++... +..+|.++...|++++|+..++++++..|++...+..+|.++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 888888 7888888888888887776654 66777777788888888888888888777777777778888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHH
Q 005626 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (687)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 283 (687)
.|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..+.....
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------- 229 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------------------- 229 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS----------------------
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc----------------------
Confidence 8888888888888887777777777777777777777777777777777655432100
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 284 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
...|....++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|++++++
T Consensus 230 ----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 230 ----------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ----------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ----------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 0013445677777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHH-HHcCCH
Q 005626 364 KPNFSQSLNNLGVVY-TVQGKM 384 (687)
Q Consensus 364 ~p~~~~~~~~la~~~-~~~g~~ 384 (687)
+|+++.++..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 777777777777776 344443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=264.81 Aligned_cols=296 Identities=15% Similarity=0.156 Sum_probs=172.0
Q ss_pred HHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (687)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (687)
+...|++...+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------ 88 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS------ 88 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------
Confidence 33344444555555555555555555555555555555555555555555555555555555555555544444
Q ss_pred HHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005626 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGV 233 (687)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (687)
++.++..+|.++...| ++++|+.+++++++.+|.+..++..+|.
T Consensus 89 -----------------------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 133 (330)
T 3hym_B 89 -----------------------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133 (330)
T ss_dssp -----------------------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4444444444444444 4444444444444444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 005626 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313 (687)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 313 (687)
++...|++++|+..++++++..|+....+..++.+ +...|++++|+..++++++..|.+..++..+|.++...
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE-------YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH-------HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 44444444444444444444444433322222222 22233444444444444444455556666677777777
Q ss_pred CCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 314 LKFDMAIVFYELAFHFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 314 g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
|++++|+..++++++.. |....++..+|.++...|++++|+.+++++++++|++..++..+|.++...|++
T Consensus 207 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 77777777777777664 555677888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCH
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLY-RDAGSI 418 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~ 418 (687)
++|+.+++++++++|++..++..++.++ ...|+.
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888888888888888888888888777 455554
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=4.4e-31 Score=272.44 Aligned_cols=300 Identities=17% Similarity=0.176 Sum_probs=220.8
Q ss_pred HcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 128 DEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 128 ~~g~~~~A~~-~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
..|++++|+. .|++++...|+++.. .+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3455555555 555555555544311 011144455555555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH---------HHHHHHhchhhh
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---------AIALTDLGTKVK 277 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l---------~~~~~~l~~~~~ 277 (687)
+++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|++...+..+ ...+..++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 66666666666666666666666666666666666666666666666665544332211 11111334333
Q ss_pred hcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 278 LEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 355 (687)
..|++++|+..++++++..|. ...++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHcCCHHHHHHH
Q 005626 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNLGVLYRDAGSISLAIDA 424 (687)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~ 424 (687)
.|+++++++|++..++..+|.++...|++++|+..|++++++.|++ ..++..+|.++..+|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9999999999999999999999999999999999999999999888 89999999999999999999999
Q ss_pred HHHHHhc
Q 005626 425 YEQCLKI 431 (687)
Q Consensus 425 ~~~al~~ 431 (687)
++++++.
T Consensus 353 ~~~~l~~ 359 (368)
T 1fch_A 353 DARDLST 359 (368)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 9877764
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=6.6e-28 Score=258.54 Aligned_cols=367 Identities=18% Similarity=0.148 Sum_probs=322.4
Q ss_pred cCchHhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hCChHHHHHHHHHHHhcCCCCH
Q 005626 45 GFEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNA 116 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 116 (687)
..+++..+.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 3578899999999999 99999999999999986 678999999999999 99999999999999875 588
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----cCChHHHHHHHHHHHhhCC
Q 005626 117 CAHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (687)
Q Consensus 117 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 188 (687)
.+++.+|.+|.. .+++++|+.+|+++.+. .+..+ +..+|.++.. .+++++|+..|+++++.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG-------QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 999999999999 89999999999999876 34444 6778888877 78999999999999986
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHH
Q 005626 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (687)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 260 (687)
.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++++. .+..
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 256 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSI 256 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 579999999999999 89999999999999876 568999999999997 89999999999999876 3444
Q ss_pred HHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCCHH
Q 005626 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-----LKFDMAIVFYELAFHFNPHCAE 335 (687)
Q Consensus 261 ~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~ 335 (687)
+...++.++..- ....+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+. .++.
T Consensus 257 a~~~lg~~y~~g---~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 329 (490)
T 2xm6_A 257 AQFRLGYILEQG---LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDAT 329 (490)
T ss_dssp HHHHHHHHHHHT---TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHH
Confidence 554444444320 01168999999999999865 5789999999999998 9999999999999986 4678
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005626 336 ACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (687)
Q Consensus 336 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 408 (687)
+++.+|.++...| ++++|+++|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.++++|
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 405 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 9999999999877 899999999999987 679999999999999 899999999999999864 68999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCC---Chhhhhh
Q 005626 409 GVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 441 (687)
Q Consensus 409 a~~~~~----~g~~~~A~~~~~~al~~~p~---~~~a~~~ 441 (687)
|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 999999 89999999999999999965 5555443
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=266.71 Aligned_cols=361 Identities=13% Similarity=0.037 Sum_probs=289.6
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (687)
.+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567889999999999999999999999986 5667788999999999999999999999999986432111
Q ss_pred H-HHHHHHHHHHhHHHHHH--cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH
Q 005626 152 A-AECLAIVLTDLGTSLKL--AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---LMQYDTALGCYEKAALERPMYA 225 (687)
Q Consensus 152 ~-~~~la~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~ 225 (687)
. ....+.++..+|..+.. .+++++|+.+|+++++++|+++.++..++.++.. .++.++|++.++++++++|++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 0 00113345666665554 4579999999999999999999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 005626 226 EAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (687)
Q Consensus 226 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 301 (687)
.++..+|..+... +++++|+.++++++...|.....+..++.++.. .|++++|+..++++++.+|++..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-------KDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-------cCchHHHHHHHHHHHHhCCChHH
Confidence 9999998776654 678899999999999999998776665555544 67999999999999999999999
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 302 AMYNLGVAYGEM-------------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (687)
Q Consensus 302 ~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (687)
++..+|.+|... +.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988643 3467899999999999999999999999999999999999999999999
Q ss_pred cCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 363 IKPNFSQ---SLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 363 ~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
+.+++.. ++..+|.+ +...|++++|+..|++++++.|++...... ...+...++++++.+|+++.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHH
Confidence 9887654 45667655 457899999999999999999997654332 344567788999999999988
Q ss_pred hhhHHHHhhhccCCChHHHHHH
Q 005626 439 GQNRLLAMNYINEGHDDKLFEA 460 (687)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~ 460 (687)
+.++ +..|...|+.+++.+.
T Consensus 433 ~~~L--G~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 433 LHVL--AFLQELNEKMQQADED 452 (472)
T ss_dssp HHHH--HHHHHHHHHCC-----
T ss_pred HHHH--HHHHHHcCCHHHHHHH
Confidence 7764 4444444544444443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.7e-30 Score=266.57 Aligned_cols=292 Identities=17% Similarity=0.188 Sum_probs=228.4
Q ss_pred HHHHhCChHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 005626 91 CLQMQNMGRLAFD-SFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (687)
Q Consensus 91 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~ 165 (687)
++...|++++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++..|++... +..+|.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~ 106 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA-------WQYLGT 106 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH-------HHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHH
Confidence 3445567777777 7777777766653 457777777777777777777777777777776554 556666
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------
Q 005626 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC---------------- 229 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------------- 229 (687)
++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+...+.
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 6777777777777777777777777777777777777777777777777777777777655543
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005626 230 NMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (687)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 307 (687)
.++.++ ..|++++|+..++++++..|+ ....+.. +|.++...|++++|+..+++++...|+++.++..+|
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 258 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG-------LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 456666 888899999999999998888 5554444 444445567999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHH
Q 005626 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----------SQSLNNLGV 376 (687)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~ 376 (687)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 005626 377 VYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~ 397 (687)
++..+|++++|..+++++++.
T Consensus 339 ~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 339 ALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHhCChHhHHHhHHHHHHH
Confidence 999999999999998877654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=7.3e-30 Score=263.05 Aligned_cols=291 Identities=20% Similarity=0.162 Sum_probs=248.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (687)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (687)
..+.+.+...+.++.. -+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 48 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK---DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -----CCCCCSSCTTT---TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555555544321 1223777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 005626 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKAL 293 (687)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l---~~~~~~l~~~~~~~~~~~~A~~~~~~al 293 (687)
+++.+|++..++..+|.++...|++++|+..|+++++..|++...+..+ +..+..++.++...|++++|+..+++++
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876655544 5556677888888999999999999999
Q ss_pred HhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 294 YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (687)
Q Consensus 294 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (687)
+..|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
.++|.++...|++++|+..|++++++.|+ +..++..++.++..+|+.+.+....++.+.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999999999876 367899999999999999998887776443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=5.3e-26 Score=243.72 Aligned_cols=368 Identities=16% Similarity=0.089 Sum_probs=315.3
Q ss_pred CchHhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hCChHHHHHHHHHHHhcCCCCHH
Q 005626 46 FEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNAC 117 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 117 (687)
..+..++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 457788999999999 99999999999999875 588999999999999 89999999999999875 5789
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 005626 118 AHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPH 189 (687)
Q Consensus 118 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 189 (687)
+++.+|.+|.. .+++++|+.+|+++++. .+..+ +..+|.++.. .+++++|+.+|+++.+. .
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS-------CNQLGYMYSRGLGVERNDAISAQWYRKSATS--G 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C
Confidence 99999999998 88999999999999986 34444 7778888887 89999999999999875 5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 190 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .+..+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 68999999999997 89999999999999875 568899999999999 99999999999999876 45555
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACN 338 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 338 (687)
...++.++.... ....+++++|+.+|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++
T Consensus 294 ~~~Lg~~y~~~~--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 294 QYYLAHLYDKGA--EGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHCB--TTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHcCC--CCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 555555544320 01127999999999999986 46789999999999877 899999999999987 6799999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 005626 339 NLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPT---YAEAYNN 407 (687)
Q Consensus 339 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 407 (687)
.+|.+|.. .+++++|+.+|+++++. .++.++.++|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 99999999 89999999999999986 468999999999999 89999999999999999954 8889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
++.++.. +.+.|.+..++.++..|+...+....
T Consensus 446 l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~ 478 (490)
T 2xm6_A 446 EKKLTAK--QLQQAELLSQQYIEKYAPEAWARMQK 478 (490)
T ss_dssp HTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 34566666666666667666555443
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=5.9e-28 Score=244.38 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=253.5
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHH------HHHHHh-ch-hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMA------IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~------~~~~~l-~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 311 (687)
++++|+..++++++..|.....+..+. .....+ +. ++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999999999998765544331 111122 33 4667889999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 392 EKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 392 ~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
+++++..|+ +..++..+|.++..+|++++|...++++++..|++.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999999 899999999999999999999999999888766543
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=4.9e-26 Score=246.57 Aligned_cols=412 Identities=11% Similarity=0.010 Sum_probs=318.6
Q ss_pred cCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
+.+.+.++.++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|++++...| +...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 4577888889984 7899999999999999999999999999999999999999999999999999999 6778888885
Q ss_pred -HHHHcCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHH---------cCChHHHHHHHHHHHhhC
Q 005626 125 -LYKDEGRLVEAAE----SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKL---------AGNTQDGIQKYYEALKID 187 (687)
Q Consensus 125 -~~~~~g~~~~A~~----~~~~al~~---~~~~~~~~~~la~~~~~lg~~~~~---------~g~~~~A~~~~~~al~~~ 187 (687)
+....|++++|.+ .|++++.. +|.+... +...+..... .|++++|...|+++++ .
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI-------WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH-------HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 4456788877765 78888765 3444444 3333333332 6889999999999999 5
Q ss_pred CCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHHHHH
Q 005626 188 PHYA--PAYYNLGVVY-------------SELMQYDTALGCYEK------AALE-----RPMY-------AEAYCNMGVI 234 (687)
Q Consensus 188 p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~~~~~la~~ 234 (687)
|... ..+....... ...+++.+|...++. .++. .|.. ...|......
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6542 2333222221 124567778777765 3332 2322 2344433332
Q ss_pred HHHc----CCH----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHH-------HHHHHHHHHHH-hCCC
Q 005626 235 YKNR----GDL----ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-------QGVAYYKKALY-YNWH 298 (687)
Q Consensus 235 ~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-------~A~~~~~~al~-~~p~ 298 (687)
.... ++. ..++..|++++...|.+...|..++..+..........|+++ +|+..|+++++ ..|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 2221 232 478899999999999999999888887765322222356776 99999999997 7999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (687)
Q Consensus 299 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (687)
+..++..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|+..|+++++..|.....+...+.+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 999999999999999999999999999999999985 6999999999999999999999999999999888877777766
Q ss_pred -HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----hhhhHHHHhhhccCC
Q 005626 378 -YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINEG 452 (687)
Q Consensus 378 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~~~~~~~~~ 452 (687)
+...|++++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.++. .+..++ ......|
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~--~~e~~~G 477 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL--AFESNIG 477 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH--HHHHHSS
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHcC
Confidence 346999999999999999999999999999999999999999999999999999887665 332221 1123457
Q ss_pred ChHHHHHHHHHHHHHH
Q 005626 453 HDDKLFEAHRDWGKRF 468 (687)
Q Consensus 453 ~~~~~~~~~~~~~~~~ 468 (687)
+.+......++....+
T Consensus 478 ~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 478 DLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHC
Confidence 7666655544443333
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=4.3e-28 Score=249.82 Aligned_cols=273 Identities=18% Similarity=0.200 Sum_probs=232.9
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
.+...++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVV 200 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l---a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 200 (687)
+...|++++|+..|+++++..|++...+..+ +.++..+|.++...|++++|+..|+++++.+|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999998876665443 455667799999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcC
Q 005626 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (687)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 280 (687)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..++.++.. .|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g 295 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-------LG 295 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-------CC
Confidence 99999999999999999999999999999999999999999999999999999999987766665555554 67
Q ss_pred CHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHY------------ADAMYNLGVAYGEMLKFDMAIVFYEL 325 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~ 325 (687)
++++|+..++++++..|+. ..++..++.++...|+.+.+....++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999988763 34556666666666666655555444
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=1.3e-27 Score=244.02 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=176.6
Q ss_pred HHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 005626 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSADPSYKPAA 153 (687)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 153 (687)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|+++++++|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a- 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV- 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-
Confidence 345566667777777777777777777777777777777777777777777777775 777777777777777776655
Q ss_pred HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005626 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (687)
Q Consensus 154 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (687)
+..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+++++++++|.+..+|+++|.
T Consensus 169 ------~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 169 ------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp ------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55556666666777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005626 234 IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (687)
Q Consensus 234 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 312 (687)
++.. .|..++|+ .+.++.++++++.++|++..+|..++.++..
T Consensus 243 ~l~~l~~~~~eA~------------------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 243 VISNTTGYNDRAV------------------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTTCSCSHHH------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHhcCcchHHH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 7766 33334442 1222455555555556666666666666666
Q ss_pred cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHH
Q 005626 313 ML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---------NLDKAVECYQMA-LSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 313 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~ 380 (687)
.| ++++|++.++++ +.+|++..++..+|.++.++| .+++|+++|+++ ++++|.....|..++..+..
T Consensus 287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 55 466666666666 666666666666776666653 246677777776 66777666666666665544
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=5.5e-28 Score=246.80 Aligned_cols=253 Identities=12% Similarity=0.058 Sum_probs=210.8
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHH
Q 005626 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 184 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 262 (687)
+..+|++..++..+|.++...|++++|+..++++++++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 345666677777788888888888888888888888888888888888888888886 8888888888888888877776
Q ss_pred HHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005626 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (687)
Q Consensus 263 ~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (687)
..++.++..+ |++++|+..|+++++++|++..+|..+|.++...|++++|+.+|+++++++|++..+|+++|.
T Consensus 170 ~~~g~~~~~~-------g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 170 HHRRVLVEWL-------RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp HHHHHHHHHH-------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-------cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6666665554 577888888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005626 343 IYKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (687)
Q Consensus 343 ~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (687)
++.. .|..++| +.+|+++++++|++..+|.+++.++...| ++++|++.++++ +.+|++..++..+|.+|..
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 9998 5554777 58999999999999999999999999988 689999999888 8899999999999999998
Q ss_pred cC--------C-HHHHHHHHHHH-HhcCCCChhhhhhHHH
Q 005626 415 AG--------S-ISLAIDAYEQC-LKIDPDSRNAGQNRLL 444 (687)
Q Consensus 415 ~g--------~-~~~A~~~~~~a-l~~~p~~~~a~~~~~~ 444 (687)
+| + +++|+++|+++ ++++|.....+..+..
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 75 2 58999999999 9999998887776543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1e-26 Score=235.21 Aligned_cols=277 Identities=18% Similarity=0.202 Sum_probs=244.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
..+.++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH------HHHHh-HH-HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAI------VLTDL-GT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~------~~~~l-g~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (687)
...|++++|+..++++++..|.+......+.. ....+ +. ++...|++++|+..++++++..|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 99999999999999999999998766433210 11112 33 467789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|++...+..++.++ ..
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-------~~ 252 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY-------SN 252 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------HH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-------HH
Confidence 99999999999999999999999999999999999999999999999999999999999877666555554 44
Q ss_pred cCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005626 279 EGDINQGVAYYKKALYYNWH------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (687)
.|++++|+..+++++...|. ...++..++.++...|++++|...++++++..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 67999999999999999998 67888888888888888888888887776543
No 31
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=6.5e-26 Score=239.12 Aligned_cols=381 Identities=15% Similarity=0.076 Sum_probs=279.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCh---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
..+|..+++.|++++|+.+|+++.+. .++.+++.+|.++...|+. ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56899999999999999999999876 5788999999999999999 9999999999976 77899999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 129 EG-----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVV 200 (687)
Q Consensus 129 ~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~ 200 (687)
.+ ++++|+.+|+++++..+ ..+ +..+|.++...+... ++...+.++.. +.++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~--~~A-------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE--GNT-------LIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC--SSC-------HHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC--HHH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 66 88999999999998544 335 555666666655443 34455555443 3457899999999
Q ss_pred HHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 005626 201 YSELMQYDTALGC----YEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (687)
Q Consensus 201 ~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~ 273 (687)
|...+.++++... ++.+...+ +.+++.+|.+|...| ++++|+..|+++.+..+.....+..++.++...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g- 226 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA- 226 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG-
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9999966555544 44444444 449999999999999 999999999999999998877666666665331
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 005626 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-- 348 (687)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 348 (687)
....+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .|
T Consensus 227 --~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 --TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp --GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred --CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 123479999999999998 8899999999998 5 5789999999999999865 48999999999998 55
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q 005626 349 ---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGS 417 (687)
Q Consensus 349 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 417 (687)
++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.++||.+|.. ..+
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCC
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999 8999999999999987 4599999999999987 4567899999999985 569
Q ss_pred HHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHHH
Q 005626 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467 (687)
Q Consensus 418 ~~~A~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (687)
+.+|..+|+++.+..+. .+...+......+......+.....++|...
T Consensus 374 ~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999987654 4443333323233322333444455555543
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2.5e-24 Score=233.09 Aligned_cols=384 Identities=8% Similarity=0.012 Sum_probs=305.9
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHH-HHHhCChHHHHH----HHHHHHhc---CCCC
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGIC-LQMQNMGRLAFD----SFSEAVKL---DPQN 115 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~----~~~~al~~---~p~~ 115 (687)
.+.....++..+..+...|++++|+.+|++++...| +.+.|..++.. ....|++++|.+ .|++++.. +|.+
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~ 120 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc
Confidence 345678899999999999999999999999999999 67888888854 445688877765 77887764 5677
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhHH------HHHHcCChHHHHH
Q 005626 116 ACAHTHCGILYKD---------EGRLVEAAESYHKALSADPSYKP--AAECLAIVLTDLGT------SLKLAGNTQDGIQ 178 (687)
Q Consensus 116 ~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~--~~~~la~~~~~lg~------~~~~~g~~~~A~~ 178 (687)
..+|...+..... .|++++|...|+++++ .|.... .+.........++. +....+++.+|..
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~ 199 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR 199 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHH
Confidence 8888888887765 7899999999999999 565432 11111111111110 1113456778877
Q ss_pred HHHH------HHhh-----CCCC-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005626 179 KYYE------ALKI-----DPHY-------APAYYNLGVVYSEL----MQY----DTALGCYEKAALERPMYAEAYCNMG 232 (687)
Q Consensus 179 ~~~~------al~~-----~p~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la 232 (687)
.+.+ .++. .|.. ...|.......... ++. ..++..|++++...|.++.+|..+|
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~ 279 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7765 3332 2322 23444433322221 232 4788999999999999999999999
Q ss_pred HHHHH-------cCCHH-------HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC
Q 005626 233 VIYKN-------RGDLE-------SAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (687)
Q Consensus 233 ~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 297 (687)
..+.. .|+++ +|+..|+++++ ..|++...+..++..+.. .|++++|...|+++++..|
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p 352 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-------RMKYEKVHSIYNRLLAIED 352 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-------cCCHHHHHHHHHHHhCccc
Confidence 99986 79987 99999999997 799988777666655554 6799999999999999999
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 298 HYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (687)
Q Consensus 298 ~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 375 (687)
.++ .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.+|..++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~ 432 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 432 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 985 6999999999999999999999999999999888887777666 34689999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 376 VVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
.++...|+.++|...|++++...|.++ .+|..........|+.+.+..+++++++..|++.
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 999999999999999999999876554 4888888899999999999999999999999644
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=6.6e-26 Score=222.89 Aligned_cols=248 Identities=17% Similarity=0.151 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
++.++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++ .|.+... .+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~---~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA---KSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH---HHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888888 3332221 234456
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (687)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 66666677788999999999999999999999999999999999999999999999999999999999999555556699
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CC-----cHHHHHHHHHHHHHcCCHH
Q 005626 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 419 (687)
Q Consensus 351 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~ 419 (687)
++|+..|+++++++|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999985 44 2478999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhH
Q 005626 420 LAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 420 ~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
+|+.+|+++++++|+++.++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999887653
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.3e-25 Score=215.75 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=133.2
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 229 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 229 (687)
+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4456777777777777777777777777777 777777777777777777777777777777776655 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005626 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (687)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 309 (687)
.+|.++...|++++|+..+++++++.|.. .++.. .|++++|+..+++++..+|....++..+|.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 77777777777777777777777766651 11222 2344555555555555444444444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 389 (687)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhC
Q 005626 390 MIEKAIAAN 398 (687)
Q Consensus 390 ~~~~al~~~ 398 (687)
.+++++++.
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 444444444
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-25 Score=217.53 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=224.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 269 (687)
.+..+..+|.++...|++++|+.+++++++.+ .++.++..+|.++...|++++|+..++++++..|+..........++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 88999999999999999999999999999998876532333345667
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (687)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 349 (687)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 77788888889999999999999999987 5667788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (687)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (687)
+++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++..+|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC------CCChhhhhh
Q 005626 430 KID------PDSRNAGQN 441 (687)
Q Consensus 430 ~~~------p~~~~a~~~ 441 (687)
+++ |++..+...
T Consensus 235 ~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTTTHHHHHHH
T ss_pred HhChhhcCCCchHHHHHH
Confidence 999 777665543
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=2.5e-25 Score=218.79 Aligned_cols=253 Identities=16% Similarity=0.162 Sum_probs=204.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHC 122 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 122 (687)
+.+.++..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999 44443 458999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (687)
|.++...|++++|+..|+++++.+|.+... +..+|.++...|++++|+..++++++.+|.++.++..+|...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDM-------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999998765 7788888899999999999999999999999999999995555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHhchhhhh
Q 005626 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKL 278 (687)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~l~~~~~~ 278 (687)
..+++++|+..++++++..|++..++..+|.++...|+ +++|+..++++++.....+.. ...+..++..+|.++..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999 899999999999876322210 11223334444444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLG 307 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la 307 (687)
.|++++|+.+++++++.+|+++.++..++
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 44444444444444444444444444433
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.3e-24 Score=214.77 Aligned_cols=261 Identities=8% Similarity=-0.040 Sum_probs=168.5
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 005626 90 ICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (687)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~ 168 (687)
...+..|+|++|+..++++...+|++ .+....++.+|...|++++|+..++.. +|.. ..++..++..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------HHHHHHHHHHHc
Confidence 34566777777777777766666665 346666777777777777777655441 2211 223556677777
Q ss_pred HcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 169 LAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (687)
Q Consensus 169 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (687)
..++.++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |.+..++..+|.++..+|++++|++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 778888888888887765 588888888999999999999999988887 7888899999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005626 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (687)
Q Consensus 247 ~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (687)
.++++++.+|+.... .++..+..+ ....|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++
T Consensus 152 ~l~~~~~~~p~~~~~--~l~~a~~~l---~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 152 ELKKMQDQDEDATLT--QLATAWVSL---AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHCTTCHHH--HHHHHHHHH---HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCcCcHHH--HHHHHHHHH---HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888876422 222222111 112345555555555555555555555555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCHHH
Q 005626 327 FHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIKPNFSQS 370 (687)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~ 370 (687)
++.+|+++.++.++|.++...|+.++ +.++++++++++|+++.+
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 55555555555555555555555443 334555555555555443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=3.5e-25 Score=209.22 Aligned_cols=211 Identities=21% Similarity=0.174 Sum_probs=154.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005626 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (687)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 267 (687)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56677777888888888888888888888888888888888888888888888888888888877777777666666655
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (687)
++...+.. .+. .....|++++|+..|+++++++|+++.++..+|.++...
T Consensus 82 ~~~~~~~~---~~~---------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 82 AYVALYRQ---AED---------------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHT---CSS---------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhh---hhh---------------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 55443100 000 112238888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|++
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88889998998888888 88888888999888889999999999999888888888888889988888999888888887
Q ss_pred HH
Q 005626 428 CL 429 (687)
Q Consensus 428 al 429 (687)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=6.1e-25 Score=207.56 Aligned_cols=207 Identities=21% Similarity=0.209 Sum_probs=179.2
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (687)
.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 005626 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317 (687)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 317 (687)
.+.. ... .....|++++|+..++++++.+|++..++..+|.++...|+++
T Consensus 86 ~~~~-------------~~~-----------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 86 LYRQ-------------AED-----------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHT-------------CSS-----------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhhh-------------hhh-----------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 6210 011 1122479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
+|+..|+++++++ +++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++-
T Consensus 136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999998864
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.5e-24 Score=214.43 Aligned_cols=259 Identities=12% Similarity=0.017 Sum_probs=227.8
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (687)
..+..|++.+|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456799999999999887777776 46778899999999999999998866 2555678888999999999999999
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005626 245 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (687)
Q Consensus 245 ~~~~~~al~~--~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 322 (687)
++.+++++.. +|++...+..++.++ ...|++++|+..+++ |.+..++..+|.++..+|++++|++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~-------~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIY-------FYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHH-------HHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHH-------HHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999876 588877665555554 447799999999998 88999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 323 YELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 323 ~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
++++++.+|++.......+ .++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++.+|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999865544434 34445689999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCChhhh
Q 005626 401 YAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~ 439 (687)
+++++.++|.++...|+.++ +..+++++++++|+++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999976 5789999999999998664
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=235.10 Aligned_cols=299 Identities=22% Similarity=0.279 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCH
Q 005626 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191 (687)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~ 191 (687)
.+..+|.++...|++++|+..|+++++..|++... .+.++..+|.++...|++++|+..+++++.. .|...
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34444444444444444444444444444443321 2333444455555555555555555554443 22235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAI 245 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 245 (687)
.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566677777777777777777777776654432 4577788888888888 88888
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHH
Q 005626 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A 319 (687)
..+++++.+.+... .....+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|
T Consensus 168 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88888876532211 1123456677778888888899999999999987755433 3788899999999999999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHH
Q 005626 320 IVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAA 387 (687)
Q Consensus 320 ~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 387 (687)
+.++++++++.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988876554 6788889999999999999999999988875443 56888889999999999999
Q ss_pred HHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHH
Q 005626 388 AEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISL 420 (687)
Q Consensus 388 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 420 (687)
+.++++++++.+ ....++..+|.++...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999888732 336678888888888887643
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=234.27 Aligned_cols=305 Identities=20% Similarity=0.210 Sum_probs=225.5
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHhCChHHHHHHHHHHHhc------CCCC
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQN 115 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 115 (687)
.....++..|..++..|++++|+..|+++++..|.+. .++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4566789999999999999999999999999999884 68899999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC--------------------hHH
Q 005626 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQD 175 (687)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~--------------------~~~ 175 (687)
..++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 778999999999999999999999999988664322 23346678888888888888 888
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 005626 176 GIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLES 243 (687)
Q Consensus 176 A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 243 (687)
|+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888887765 22335567777777777777777777777777664433 2366777777777777777
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005626 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (687)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (687)
|+.++++++.+.+.... .... ..++..+|.++...|++++|+.++
T Consensus 246 A~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-chHH----------------------------------HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 77777777665433211 0111 345556666666666666666666
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH
Q 005626 324 ELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDA 386 (687)
Q Consensus 324 ~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~ 386 (687)
+++++..+.. ..++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|+...
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 6666653322 556777777777777777777777777776322 25577777777777776533
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=1.3e-24 Score=227.70 Aligned_cols=285 Identities=22% Similarity=0.231 Sum_probs=195.8
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
...++.+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..++++++.......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND------ 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC------
Confidence 34455556666666666666666666666555554 34555555555555555555555555443211100
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 231 (687)
.+....++..+|.++...|++++|+.+++++++. .+....++..+
T Consensus 122 -----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 122 -----------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 2334556677777777777777777777777766 34456678888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHH
Q 005626 232 GVIYKNRGD-----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (687)
Q Consensus 232 a~~~~~~g~-----------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 294 (687)
|.++...|+ +++|+.++++++++.+... +
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------------------~------------- 218 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---------------------D------------- 218 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---------------------C-------------
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC---------------------C-------------
Confidence 888888888 7777777776665422110 0
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 005626 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF- 367 (687)
Q Consensus 295 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 367 (687)
.+....++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 219 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 219 -RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 01123456667777777777777777777777665432 2377888888888888888888888888876643
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 368 -----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 368 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
..++..+|.++...|++++|+.++++++++.+. ...++..+|.++..+|++++|..+|++++++.++..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 568889999999999999999999999887443 256889999999999999999999999999987643
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=3.6e-24 Score=224.27 Aligned_cols=280 Identities=23% Similarity=0.281 Sum_probs=222.1
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAE 226 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 226 (687)
+..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.+++++++. .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45577899999999999999999999999999986 58899999999999999999999999987 466678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC-----------------HHHHHHHH
Q 005626 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-----------------INQGVAYY 289 (687)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 289 (687)
++..+|.++...|++++|+..++++++..+... .....+.++..+|.++...|+ +++|+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999998743211 112334556666666666667 55555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-
Q 005626 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS- 368 (687)
Q Consensus 290 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 368 (687)
+++++.. ... ...+....++..+|.++...|++++|+.++++++++.+...
T Consensus 207 ~~al~~~---------------------------~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 207 QENLKLM---------------------------RDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHH---------------------------HHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH---------------------------HHc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 5444221 111 01122356889999999999999999999999999876543
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 369 -----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 369 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++..+|++++|+.++++++++.++...
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 389999999999999999999999999987643 678999999999999999999999999998665432
Q ss_pred ----hhhhHHHHhhhccCCChHHHHHHHHHHH
Q 005626 438 ----AGQNRLLAMNYINEGHDDKLFEAHRDWG 465 (687)
Q Consensus 438 ----a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (687)
+.....++..+...|+.+++....++..
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2233456777788888877766655433
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=5e-24 Score=216.07 Aligned_cols=276 Identities=25% Similarity=0.302 Sum_probs=235.5
Q ss_pred HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 005626 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAY 228 (687)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 228 (687)
.+...|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 36778999999999999999999999999998 468889999999999999999999999876 34457789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC--------------------HHHHHHH
Q 005626 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAY 288 (687)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--------------------~~~A~~~ 288 (687)
..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|+ +++|+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999987654322 12335566777777777788 9999999
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 005626 289 YKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVEC 356 (687)
Q Consensus 289 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 356 (687)
+++++... +....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99988762 2335689999999999999999999999999875432 34899999999999999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 005626 357 YQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDA 424 (687)
Q Consensus 357 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 424 (687)
+++++++.+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999886654 6789999999999999999999999999885432 56889999999999999999999
Q ss_pred HHHHHhcCCCC
Q 005626 425 YEQCLKIDPDS 435 (687)
Q Consensus 425 ~~~al~~~p~~ 435 (687)
+++++++.++.
T Consensus 326 ~~~a~~~~~~~ 336 (338)
T 3ro2_A 326 AEKHLEISREV 336 (338)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=2.3e-23 Score=200.79 Aligned_cols=220 Identities=18% Similarity=0.211 Sum_probs=185.7
Q ss_pred cccccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 005626 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (687)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (687)
.......+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++.
T Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 95 (243)
T 2q7f_A 16 PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95 (243)
T ss_dssp --------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHH
Confidence 33445678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (687)
.+|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|++..++..+|.+
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDL-------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 99999999999999999999999999998765 77788888899999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005626 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (687)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 267 (687)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++...+..++.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877655443
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=4.3e-23 Score=217.56 Aligned_cols=352 Identities=18% Similarity=0.108 Sum_probs=259.8
Q ss_pred chHhHHHHHHHHHhCCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC-----ChHHHHHHHHHHHhcCCCCHHH
Q 005626 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----MGRLAFDSFSEAVKLDPQNACA 118 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~ 118 (687)
+++.++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+..|+++++. +++.+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A 108 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNT 108 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSC
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 455677788888888988 9999999999976 7789999999777766 889999999999984 45669
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH----HHHHHhhCCCCH
Q 005626 119 HTHCGILYKDEGRLVE---AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK----YYEALKIDPHYA 191 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~----~~~al~~~p~~~ 191 (687)
++.+|.+|...+...+ +...+.++.... +..+ .+.+|.++...+.++++... ++.+...+ +
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a-------~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~ 176 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEA-------GLAQVLLYRTQGTYDQHLDDVERICKAALNTT---D 176 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTH-------HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---T
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHH-------HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---H
Confidence 9999999998776544 444555444332 2333 66778888887855555444 44444434 4
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005626 192 PAYYNLGVVYSELM---QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNN 264 (687)
Q Consensus 192 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (687)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |+++.++..
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 49999999999999 999999999999999999999999999999776 79999999999998 888888888
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCHHHHHH
Q 005626 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML-----KFDMAIVFYELAFHFNPHCAEACNN 339 (687)
Q Consensus 265 l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~ 339 (687)
++.++..- ...+++++|+.+|+++.+.. ++.+++.+|.+|. .| ++++|+.+|+++. +.++.++++
T Consensus 254 Lg~~~~~~----~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 254 LAQLLYDF----PELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY 323 (452)
T ss_dssp HHHHHHHS----GGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH
Confidence 87774421 12789999999999998654 8999999999998 55 9999999999999 889999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 340 LGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 340 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
+|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++++|..+|+++.+..+ ..+...++.+
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l 399 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQL 399 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 9999987 4599999999999987 4668899999999985 5699999999999988654 5566666666
Q ss_pred HHHc--CCHHHHHHHHHHHHhcC
Q 005626 412 YRDA--GSISLAIDAYEQCLKID 432 (687)
Q Consensus 412 ~~~~--g~~~~A~~~~~~al~~~ 432 (687)
...+ ++..+|....++..+..
T Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhc
Confidence 5433 35566666666655543
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=1.2e-23 Score=213.16 Aligned_cols=278 Identities=22% Similarity=0.306 Sum_probs=200.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCHH
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAP 192 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 192 (687)
++..|..+...|++++|+..|+++++..|++... .+.++..+|.++...|++++|+..++++++. .+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3444555555555555555555555554444322 2333445555555555555555555555444 223355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAIA 246 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 246 (687)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 67777777777777777777777777664432 3477788888888888 888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHH
Q 005626 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAI 320 (687)
Q Consensus 247 ~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~ 320 (687)
.+++++...+... .....+.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+
T Consensus 165 ~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888876533211 122345677788888888999999999999999875432 348999999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 005626 321 VFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAA 388 (687)
Q Consensus 321 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~ 388 (687)
..++++++..+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999999886554 7788999999999999999999999999885432 458899999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005626 389 EMIEKAIAANPT 400 (687)
Q Consensus 389 ~~~~~al~~~p~ 400 (687)
.++++++++.+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=1.7e-21 Score=191.45 Aligned_cols=232 Identities=22% Similarity=0.323 Sum_probs=200.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
+|.++.+++.+|.++...|++++|+.+|+++++ +.++.+++.+|.++.. .+++++|+.+|+++++.. +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467788888899999999999999999998888 6778888889999988 899999999999988874 44444
Q ss_pred HHHHHHHHHhchhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCH
Q 005626 263 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 334 (687)
Q Consensus 263 ~~l~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 334 (687)
..+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.. +.
T Consensus 78 -------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 78 -------HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp -------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred -------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 444555555 678999999999988874 78899999999999 999999999999999976 68
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005626 335 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 406 (687)
Q Consensus 335 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (687)
.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..| +.+++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 899999999999 99999999999999987 468899999999999 9999999999999999866 88999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCChh
Q 005626 407 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 407 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
++|.+|.. .+++++|+.+|++++++.|++..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 99999999999999999987543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=1e-22 Score=196.18 Aligned_cols=214 Identities=22% Similarity=0.280 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
+..++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++...+..++.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555554443322222222111
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (687)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++
T Consensus 103 -------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 103 -------VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp -------HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred -------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 1223333333333333333333444444444444555555555555555555554444555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 351 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
++|+..++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 5555555555555554444555555555555555555555555555555544444444443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=4.7e-22 Score=192.84 Aligned_cols=208 Identities=16% Similarity=0.107 Sum_probs=198.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 128 DEGRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (687)
..|++++|+..+++++. ..|.+.. ++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSR-------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999 5565444 47788889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
++++|+..++++++..|.+...+..++.++...|++++|..+++++++..|++....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999987654
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2e-22 Score=185.21 Aligned_cols=172 Identities=24% Similarity=0.383 Sum_probs=166.1
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
+.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34677788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
..+++++|+..++++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++|.+|..+|++++|+.+|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChh
Q 005626 426 EQCLKIDPDSRN 437 (687)
Q Consensus 426 ~~al~~~p~~~~ 437 (687)
+++++++|+++.
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999999998653
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=6.7e-22 Score=194.42 Aligned_cols=252 Identities=14% Similarity=0.073 Sum_probs=169.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (687)
.+...|++++|+..|+++++..+.+... .+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDE---RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCch---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3445678888999999988875544322 3556888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
|++++|+.+++++++.+|.+..++..+|.++...|++++|+..++++++..|++.......... ...|++++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~ 162 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA--------EQKLDEKQ 162 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------HHHHCHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH--------HHhcCHHH
Confidence 9999999999999999999999999999999999999999999999999888876433222211 22356666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (687)
Q Consensus 285 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (687)
|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.++...|++++|+.+|+++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666655543332 444555555555566555555554432 1345555555555555555555555555
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
++++|++... .+.++...|++++|++.+
T Consensus 242 l~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 5555544222 234444445555554443
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=9.2e-23 Score=211.26 Aligned_cols=241 Identities=13% Similarity=0.132 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 266 (687)
.++.+|.++...|++++|+.+++++++. .++ .+.++..+|.++...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4455999999999999999999999987 222 4688999999999999999999999999998776554344567
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC-CCCH
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 334 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~ 334 (687)
.++..+|.++...|++++|+.+++++++..+.. ..++.++|.++...|++++|+.+++++++ .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 888999999999999999999999999875433 25899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 406 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 406 (687)
.++.++|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999884 3333456789999999999 88888888776 33344567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 407 NLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.+|.+|..+|++++|..+|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=2.1e-22 Score=198.01 Aligned_cols=248 Identities=17% Similarity=0.151 Sum_probs=208.1
Q ss_pred HHHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 166 SLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
.....|++++|+..|+++++.. |.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3345588999999999999873 456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 321 (687)
++|+..|+++++..|++...+..++.++.. .|++++|+..++++++..|++......++.. ...|++++|+.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~ 165 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYY-------GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence 999999999999999887666655555544 6799999999999999999988766666544 66699999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 322 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 322 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
.+++++...|.+...+. ++.++...++.++|+..++++++..|.. ..++..+|.++...|++++|+..|+++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 166 VLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999998888766654 7777888888899999999998877643 678899999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 398 NPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
+|++... .+.++..+|++++|++.+
T Consensus 245 ~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTCHH---HHHHHHHHHHHHHC----
T ss_pred CchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9876433 367888889999988877
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=1.3e-21 Score=189.78 Aligned_cols=208 Identities=18% Similarity=0.115 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
+.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-------------
Confidence 5666667777777777777777777777766666666666666666666666666666666655554
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g 348 (687)
+..++..+|.++...|++++|+.+++++++ ..|.+..++..+|.++...|
T Consensus 104 ----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 104 ----------------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred ----------------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 455566666777777777777777777777 66667777777777777778
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|..+++++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888877777777777888888888888888888888888777777777788888888888888888888888
Q ss_pred HhcCCCChhhh
Q 005626 429 LKIDPDSRNAG 439 (687)
Q Consensus 429 l~~~p~~~~a~ 439 (687)
++++|+++.+.
T Consensus 236 ~~~~p~~~~~~ 246 (252)
T 2ho1_A 236 KRLYPGSLEYQ 246 (252)
T ss_dssp HHHCTTSHHHH
T ss_pred HHHCCCCHHHH
Confidence 88888776553
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=3.5e-21 Score=182.91 Aligned_cols=211 Identities=16% Similarity=0.113 Sum_probs=154.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005626 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (687)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 267 (687)
|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------------- 69 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL--------------- 69 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH---------------
Confidence 44455555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHH
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVIY 344 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~ 344 (687)
...|.+..++..+|.++... |++++|+..++++++ ..|.+..++..+|.++
T Consensus 70 --------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 70 --------------------------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp --------------------------HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred --------------------------HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 44555556667777777777 888888888888887 5566678888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Q 005626 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAID 423 (687)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 423 (687)
...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..| ++...+..++.++...|+.++|..
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888 888888888888888888888888
Q ss_pred HHHHHHhcCCCChhhh
Q 005626 424 AYEQCLKIDPDSRNAG 439 (687)
Q Consensus 424 ~~~~al~~~p~~~~a~ 439 (687)
+++.+.+.+|+++.+.
T Consensus 204 ~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 204 YEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 8888888888887654
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.1e-20 Score=185.77 Aligned_cols=230 Identities=22% Similarity=0.287 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----cCChHHHHHHHHHHHhhCC
Q 005626 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (687)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 188 (687)
|+++.+++.+|.++...|++++|+.+|+++++ +++..+ +..+|.++.. .+++++|+..|+++++.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a-------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSG-------CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHH-------HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 33444444444444444444444444444444 222222 3334444444 444444444444444432
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHH
Q 005626 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (687)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 260 (687)
++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 144 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----- 144 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----
Confidence 44555555555555 555555555555555542 45555555555555 555555555555554432
Q ss_pred HHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHH
Q 005626 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEA 336 (687)
Q Consensus 261 ~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 336 (687)
+..++..+|.++.. .+++++|+.+|+++++. .++.+
T Consensus 145 --------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a 184 (273)
T 1ouv_A 145 --------------------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPG 184 (273)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred --------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 23344455555555 55666666666666554 24566
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 005626 337 CNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 337 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 402 (687)
+..+|.++.. .+++++|+.+|+++++..+ +.++..+|.+|.. .+++++|+.+|+++++..|+++
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 6666666666 6677777777777666644 6666777777776 6777777777777777666543
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=1.1e-21 Score=180.24 Aligned_cols=172 Identities=25% Similarity=0.363 Sum_probs=139.4
Q ss_pred CCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 4567777888888888888888888888888888888888888888888888888888888888888877665
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (687)
+..+|..+...++++.|+..+.+++..+|.+..++..+|.++..+|++++|++.|+++++.+|.++.++..+|.++..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 55666677777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCc
Q 005626 240 DLESAIACYERCLAVSPNF 258 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~ 258 (687)
++++|+..|+++++++|++
T Consensus 156 ~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHhCCccC
Confidence 8888888888888887764
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=4e-22 Score=211.52 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=178.2
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (687)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (687)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4577888888888889999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005626 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 250 ~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (687)
++++++|+ ...+..++.++..+.. +. .....|++++|+..|++++++
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~-----~~---------------------------~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQT-----DS---------------------------GDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCC-----SC---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhcc-----CC---------------------------hhhhhhhHHHHHHHHHHHHHh
Confidence 99999998 5666666655554310 10 111334455556666666666
Q ss_pred CCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 330 NPHCAEACNNLGVIYKDR--------DNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (687)
Q Consensus 330 ~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (687)
+|++..++..+|.++... |++++|+.+|+++++++| +++.++.++|.++...|++++|+..|+++++++
T Consensus 209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666666 777777888888887777 778888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
|++..++..++.++..+|++++|++.+.+.
T Consensus 289 p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888888888888888888888776654
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=7.1e-21 Score=180.75 Aligned_cols=212 Identities=20% Similarity=0.160 Sum_probs=166.0
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (687)
..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hc-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005626 237 NR-GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (687)
Q Consensus 237 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 315 (687)
.. |++++|+..++++++ .|.. |....++..+|.++...|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~-~~~~--------------------------------------~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA-DPTY--------------------------------------PTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT-STTC--------------------------------------SCHHHHHHHHHHHHHHTTC
T ss_pred HhcCcHHHHHHHHHHHHc-CcCC--------------------------------------cchHHHHHHHHHHHHHcCC
Confidence 99 999999999999988 2221 2233445555666666666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (687)
+++|+..++++++..|.+..++..+|.++...|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666 66666666666666666666666666666
Q ss_pred HHhCCCcHHHHHH
Q 005626 395 IAANPTYAEAYNN 407 (687)
Q Consensus 395 l~~~p~~~~~~~~ 407 (687)
.+..|+++.+...
T Consensus 209 ~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 209 QANFPYSEELQTV 221 (225)
T ss_dssp HHHCTTCHHHHHH
T ss_pred HHhCCCCHHHHHH
Confidence 6666666655443
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=2.6e-21 Score=193.53 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 005626 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 133 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 204 (687)
++|+..|++++..+|.+...+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 57777777777777777777666655555444444455775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHH
Q 005626 205 MQYDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 283 (687)
|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|.....+...+.... ...|+++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~------~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY------YCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH------HTSCCHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------HHcCCHH
Confidence 9999999999999999998886 89999999999999999999999999988876544432221111 1135666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 284 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
+|+..|+++++.+|+++.++..++.++...|++++|+..|++++.. .| ....+|..++..+...|++++|...+++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666664 33 2455666666666666666666666666
Q ss_pred HHhcCCCC
Q 005626 360 ALSIKPNF 367 (687)
Q Consensus 360 al~~~p~~ 367 (687)
+++..|++
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 66666654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=6.2e-22 Score=210.06 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHH
Q 005626 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKA 353 (687)
Q Consensus 283 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A 353 (687)
++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|+ ..++..+|.++... |++++|
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A 198 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHH
Confidence 44444444444455556677788888888889999999999999999888 78999999999999 999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHH
Q 005626 354 VECYQMALSIKPNFSQSLNNLGVVYTVQ--------GKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAI 422 (687)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~ 422 (687)
+..|+++++++|+++.++.++|.++... |++++|+..|+++++++| +++.+++++|.+|..+|++++|+
T Consensus 199 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999 999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHHHhhh
Q 005626 423 DAYEQCLKIDPDSRNAGQNRLLAMNY 448 (687)
Q Consensus 423 ~~~~~al~~~p~~~~a~~~~~~~~~~ 448 (687)
..|+++++++|++..++.++...+..
T Consensus 279 ~~~~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 279 EGFSQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999888776554433
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=7.2e-20 Score=203.82 Aligned_cols=334 Identities=12% Similarity=0.067 Sum_probs=259.5
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (687)
.+++..-..++.+...|.+.+|+++|++++ ..|. +...-..++.+..+. +..+..++..+.-..+ .-.
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHH
Confidence 456666677888889999999999999999 4444 334444455555444 3344444444432211 234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005626 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (687)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (687)
+|.++...|.+++|...|+++- ....+ +...+...+++++|+++++++ +.+.+|+.+|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A----------~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA----------VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH----------HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHH
Confidence 8999999999999999999972 11111 222233668999999998865 6689999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCC
Q 005626 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 281 (687)
...|++++|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++.. .... ++..+.+.++
T Consensus 1116 l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt~-------LafaYAKl~r 1182 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VETE-------LIFALAKTNR 1182 (1630)
T ss_pred HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccHH-------HHHHHHhhcC
Confidence 9999999999999886 8899999999999999999999999999998875531 1112 4444444567
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (687)
+++ ++.|. ...+...+..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++
T Consensus 1183 lee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1183 LAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 775 33332 2334466778999999999999999999996 58999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+..
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 5679999999999999999999998874 4444 4556689999999999999999999999999887776655
Q ss_pred H
Q 005626 442 R 442 (687)
Q Consensus 442 ~ 442 (687)
+
T Consensus 1320 L 1320 (1630)
T 1xi4_A 1320 L 1320 (1630)
T ss_pred H
Confidence 4
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=3.6e-21 Score=183.48 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=196.6
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
.+++.++..|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4568899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 202 (687)
++...|++++|+..++++++..|++......++.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999 9999999999997
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005626 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (687)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 269 (687)
..| ...++++..+.+.....+ .+......+.+++|+.+++++++++|++......++.+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 654 455677777776665544 344556677899999999999999999998887776654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=2.8e-21 Score=200.04 Aligned_cols=323 Identities=12% Similarity=0.058 Sum_probs=189.4
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHhHH----HHHHHhCChHHHH-----------HHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKG----ICLQMQNMGRLAF-----------DSFSE 107 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la----~~~~~~g~~~~A~-----------~~~~~ 107 (687)
..+...+......+..+++++|..+++++.+.-+ .+...+.... ......++++.+. +.+++
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 4667788888899999999999999999866422 2444332222 1222233333333 34443
Q ss_pred HHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHH
Q 005626 108 AVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (687)
Q Consensus 108 al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~ 181 (687)
+-. .|.... .++.+|.++...|++++|+..|++++++.....+ ....+.++..+|.++...|++++|+..++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222 222211 2333666666666666666666666655222111 11123445555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 182 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
++++..+.... ..+....++..+|.++...|++++|+..|++++++.+... .
T Consensus 168 ~al~~~~~~~~---------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 219 (383)
T 3ulq_A 168 QAYEIYKEHEA---------------------------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-Q 219 (383)
T ss_dssp HHHHHHHTCST---------------------------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHhCcc---------------------------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 55544221100 0011123455555555555555555555555554433221 1
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN----- 330 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 330 (687)
....+.++..+|.++...|++++|+.+++++++ .+ |....++..+|.++...|++++|+.++++++++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 112344455555555555666666666666665 34 5566778888888888888888888888888763
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 331 PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (687)
+.....+..+|.++...|+ +++|+..+++. ...+....++..+|.+|...|++++|..++++++++..
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3333445678888888888 77788777776 33344566888899999999999999999999887643
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.9e-20 Score=185.94 Aligned_cols=224 Identities=8% Similarity=0.063 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHh
Q 005626 208 DTALGCYEKAALERPMYAEAYCNMGVIYKN-------RGDL-------ESAIACYERCLA-VSPNFEIAKNNMAIALTDL 272 (687)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~l 272 (687)
++|+..|+++++.+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++...+..++.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 677888888888888888888888887763 5775 899999999999 699988777666665554
Q ss_pred chhhhhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCH
Q 005626 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350 (687)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 350 (687)
.|++++|...|+++++..|.++. ++..+|.++...|++++|+..|+++++..|....++...+.+... .|++
T Consensus 112 ------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 ------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp ------TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred ------cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 67999999999999999999887 999999999999999999999999999999998888877776544 7999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP-TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (687)
Q Consensus 351 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (687)
++|+..|+++++.+|+++.++..++.++...|++++|...|++++.. .| +...+|..++..+...|+.++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 55 378899999999999999999999999
Q ss_pred HHHhcCCCChhh
Q 005626 427 QCLKIDPDSRNA 438 (687)
Q Consensus 427 ~al~~~p~~~~a 438 (687)
++++..|++...
T Consensus 266 ~a~~~~p~~~~~ 277 (308)
T 2ond_A 266 RRFTAFREEYEG 277 (308)
T ss_dssp HHHHHTTTTTSS
T ss_pred HHHHHccccccc
Confidence 999999987643
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.6e-19 Score=201.08 Aligned_cols=319 Identities=16% Similarity=0.151 Sum_probs=259.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005626 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (687)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (687)
.|.++...|.|++|..+|+++- ... ..+...+...+++++|.++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4999999999999999999972 111 11233344888999999999866 66889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213 (687)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 213 (687)
+|+..|.++ ++... +..++.++...|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1123 EAIdsYiKA-----dD~sa-------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSS-------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HHHHHHHhc-----CChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 999999886 44444 777888899999999999999999988744 3334459999999999885 444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 005626 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (687)
Q Consensus 214 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al 293 (687)
|. ..+ +...+..+|..+...|++++|..+|.++ .. +..++..+...|++++|++.++++
T Consensus 1189 fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~n-------y~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1189 FI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SN-------FGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hH-------HHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 42 233 4566778999999999999999999996 13 444555555567999999999998
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (687)
Q Consensus 294 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 373 (687)
.+..+|...+.++...|+|..|..+... +.. +++.+..++..|...|.+++|+.++++++.+++.+...+..
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 4678999999999999999999998874 333 35566689999999999999999999999999999999988
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 374 LGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (687)
Q Consensus 374 la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (687)
+|.++.+ -++..++++.|...+.+.+ ++...|..+..+|.+-|+++.|+...-+
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 8888876 5678889999998888777 7788999999999999999999954433
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=4.2e-20 Score=176.06 Aligned_cols=211 Identities=22% Similarity=0.240 Sum_probs=152.8
Q ss_pred HHHHhHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005626 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (687)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (687)
.+..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 488899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCC
Q 005626 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLK 315 (687)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 315 (687)
+|++++|+..++++++..|++......++.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.++...|
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~- 167 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG- 167 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-
Confidence 9999999999999999999998777666666666666666666666666666666666665 5555555555554332
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (687)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (687)
...++++..+.+.....+ .+......+.+++|+.+|+++++++|++..+...++.
T Consensus 168 ----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 168 ----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp ----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 223344444443332222 1222223333444444444444444444444443333
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=1.4e-20 Score=194.34 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 266 (687)
.++.+|..+...|++++|+..++++++..+ ..+.++..+|.++...|++++|+.++++++++.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567889999999999999999999998632 24678999999999999999999999999998766443233567
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHH
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 335 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 335 (687)
.++..+|.++...|++++|+.+++++++..+. ...++.++|.++...|++++|+.+++++++ .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88899999999999999999999999986431 245789999999999999999999999999 6777799
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHH
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 407 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 407 (687)
++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...+....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999844 334567788888888898 88888888772 223344678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 408 LGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
+|.+|...|++++|..+|++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=6.2e-21 Score=209.85 Aligned_cols=174 Identities=21% Similarity=0.333 Sum_probs=157.2
Q ss_pred hCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (687)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 156 (687)
..|++++++.++|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4688889999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (687)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (687)
+.++|.++...|++++|++.|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 005626 237 NRGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~ 257 (687)
.+|++++|++.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 999999999999999887654
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=2.5e-19 Score=184.68 Aligned_cols=310 Identities=11% Similarity=-0.027 Sum_probs=189.5
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
.++..+|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...+..... ...+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence 3445555556666666666666666665554332 245666777777777777777777777665443322 2234
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----Y 224 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 224 (687)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|..+++++++..+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 556777888888888888888888887763 334567788999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005626 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (687)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 304 (687)
..++..+|.++...|++++|...+++++.+.+............. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~----------------------------------~ 219 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN----------------------------------K 219 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH----------------------------------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH----------------------------------H
Confidence 567889999999999999999999999876432110000011111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHH
Q 005626 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNL 374 (687)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l 374 (687)
.++.++...|++++|...+++++...+.. ...+..++.++...|++++|+..+++++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 12233344455555555555544443321 223455566666666666666666666554322 12355666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
|.++...|++++|...+++++.+.+.. .....+...| +.....+++.+...|-
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 677777777777777777766653321 1112223333 4556666666666664
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=193.34 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=193.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 005626 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (687)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 255 (687)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999884 56667889999999999999999999999999874
Q ss_pred --CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005626 256 --PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (687)
Q Consensus 256 --~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 325 (687)
++.+ ..+.++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++
T Consensus 103 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCCh----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 234567777888888899999999999999874 44567899999999999999999999999
Q ss_pred HHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------C------HHHHHHHHHHHHHcC
Q 005626 326 AFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------F------SQSLNNLGVVYTVQG 382 (687)
Q Consensus 326 al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g 382 (687)
+++. .|....++..+|.++...|++++|+.+++++++..+. . ...+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9998 6666789999999999999999999999999976332 2 223444555556667
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.+.+|...++++....|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7788888999999999999999999999999999999999999999999875
No 74
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=7.3e-19 Score=171.88 Aligned_cols=238 Identities=11% Similarity=-0.012 Sum_probs=209.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCH
Q 005626 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 282 (687)
...++|+..+.+++.++|++..+|+..+.++...+ ++++++..+++++..+|++..+|.....++..+.......+++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 33468888888888888888888888888888888 8999999999999999999888888888874332221123689
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HHHHH
Q 005626 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------LDKAV 354 (687)
Q Consensus 283 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~ 354 (687)
++++..+.++++.+|++..+|...+.++...|.++ +++++++++++.+|.+..+|...+.++...++ +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999988 99999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
+++++++..+|++..+|..++.++...|+..+ ...++++++++. |.++.++..++.++.+.|+.++|+++|+.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999998555 556777777766 88899999999999999999999999999997
Q ss_pred -cCCCChhhhhhH
Q 005626 431 -IDPDSRNAGQNR 442 (687)
Q Consensus 431 -~~p~~~~a~~~~ 442 (687)
++|-....+..+
T Consensus 287 ~~Dpir~~yW~~~ 299 (306)
T 3dra_A 287 KYNPIRSNFWDYQ 299 (306)
T ss_dssp TTCGGGHHHHHHH
T ss_pred ccChHHHHHHHHH
Confidence 899987776554
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=4.2e-19 Score=182.98 Aligned_cols=280 Identities=14% Similarity=0.015 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 005626 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (687)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (687)
.++..+|.++...|++++|+..+++++...|.... ...+.++..+|.++...|++++|+..+++++...+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45677888888999999999999999988775432 2245567788888888999999999999988775432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+.....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ- 171 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-
Confidence 2346778888888999999999988888764 2335567778888888888888888888888877653210
Q ss_pred HHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC-HHHH--
Q 005626 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC-AEAC-- 337 (687)
Q Consensus 263 ~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-~~~~-- 337 (687)
....++..+|.++...|++++|...+++++...+ .. ....
T Consensus 172 -----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 172 -----------------------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp -----------------------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 1223456677777777777777777777776522 22 1111
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 005626 338 --NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (687)
Q Consensus 338 --~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (687)
..++.++...|++++|..++++++...+.. ...+..++.++...|++++|...+++++...+. ...++
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 235566889999999999999999887653 336788999999999999999999999887432 23588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
..+|.++...|++++|...+++++.+.+.
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=187.16 Aligned_cols=254 Identities=18% Similarity=0.194 Sum_probs=157.6
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PS 148 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~ 148 (687)
..++..+|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+..+++++... ++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444444444444444444444444442 33344556666666666666666666666666542 22
Q ss_pred CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (687)
Q Consensus 149 ~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (687)
.+. .+.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+++++++.
T Consensus 107 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 107 HPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222 35568889999999999999999999999874 556778999999999999999999999999998
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 005626 221 --------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (687)
Q Consensus 221 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (687)
.|....++..+|.++...|++++|+..++++++..+...... ..........
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~-------- 242 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS------------VDDENKPIWM-------- 242 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------------------CCHHH--------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC------------CCcchHHHHH--------
Confidence 666778899999999999999999999999998644311000 0000000000
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 293 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
....+..++..+...+.+.+|+..++++....|....++..+|.++...|++++|+++|++++++.|
T Consensus 243 ------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 243 ------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 0112333334444455555666666666666666666666666666666666666666666666654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=1.7e-19 Score=186.26 Aligned_cols=323 Identities=14% Similarity=0.086 Sum_probs=187.7
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHH----HhCChHHHH---------HHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQ----MQNMGRLAF---------DSFSEAV 109 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al 109 (687)
..+...+..-..++.++++++|..+++++.+.-+ .+...++..+...+ ..+.+..+. ..++++-
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 4556667777777899999999999998765322 23444433322222 112222222 3333322
Q ss_pred hcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH
Q 005626 110 KLDPQ-----NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (687)
Q Consensus 110 ~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (687)
..... ....++.+|..+...|++++|+..|++++++.+...+ ....+.++..+|.++...|++++|+..+++++
T Consensus 90 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11100 1123455566666666666666666666655332111 11234445555555555555555555555554
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005626 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (687)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (687)
+..+.... ..+....++..+|.++...|++++|+.+|++++++.+.... ...
T Consensus 169 ~~~~~~~~---------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~ 220 (378)
T 3q15_A 169 DIYQNHPL---------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRF 220 (378)
T ss_dssp HHHHTSTT---------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHhCCC---------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHH
Confidence 43221000 00011334555555555555555555555555554321110 113
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCH
Q 005626 265 MAIALTDLGTKVKLEGDINQGVAYYKKALY-----YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCA 334 (687)
Q Consensus 265 l~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~ 334 (687)
.+.++..+|.++...|++++|+.++++++. .+|....++..+|.++...|++++|+.++++++++. +...
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344555556666666666666666666666 556667788888999999999999999999998874 3334
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 335 EACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (687)
Q Consensus 335 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (687)
..+..++.++...++ +.+|+.++++. ...+....++..+|.+|...|++++|..+|+++++..
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 556777888888888 88888888762 2334445678889999999999999999999988753
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=3.1e-18 Score=167.40 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=216.5
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCH
Q 005626 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDL 241 (687)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~ 241 (687)
...++|+..+.+++.++|++..+|+..+.++...+ ++++++.++++++..+|++..+|+..+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44479999999999999999999999999999999 999999999999999999999999999999 777 899
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEMLK---- 315 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---- 315 (687)
++++..+.++++.+|++..+|.....++..++ .++ ++++.++++++.+|.+..+|...+.++...++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999998888865 555 99999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 005626 316 --FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAE 389 (687)
Q Consensus 316 --~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~ 389 (687)
++++++++++++..+|.+..+|+.++.++...|+..+ ...+++++++++ |.++.++..++.++.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999999999999999998555 556778888776 8899999999999999999999999
Q ss_pred HHHHHHH-hCCCcHHHHHHHHHH
Q 005626 390 MIEKAIA-ANPTYAEAYNNLGVL 411 (687)
Q Consensus 390 ~~~~al~-~~p~~~~~~~~la~~ 411 (687)
+|+.+.+ .+|-....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 799999888877654
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=2.2e-19 Score=174.91 Aligned_cols=215 Identities=12% Similarity=0.068 Sum_probs=147.2
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005626 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (687)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (687)
...|.++..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++..|+++..
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4577888999999999999999999999999999998888 8889999999999999999999999999988865321
Q ss_pred HHHHHHHHHHhchhhhh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005626 262 KNNMAIALTDLGTKVKL--------EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 333 (687)
..++..+|.++.. .|++++|+..|+++++.+|++..+...+..+....++ .
T Consensus 89 ----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~ 147 (261)
T 3qky_A 89 ----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------L 147 (261)
T ss_dssp ----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------H
T ss_pred ----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------H
Confidence 2233344444444 5566666666666666666654433322222111110 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCC
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~ 400 (687)
...++.+|.++...|++++|+..|+++++..|+ .+.++..+|.++..+ |++++|+..|+++++..|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 223567777777777777777777777777776 345777777777765 7777777777777777777
Q ss_pred cH---HHHHHHHHHHHHcCCHHH
Q 005626 401 YA---EAYNNLGVLYRDAGSISL 420 (687)
Q Consensus 401 ~~---~~~~~la~~~~~~g~~~~ 420 (687)
++ .+...++.++..++++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhh
Confidence 63 455556666665555544
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=3.6e-19 Score=173.45 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=143.8
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (687)
.+.+++.++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.+++..|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44578899999999999999999999999999999998 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005626 118 AHTHCGILYKD--------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (687)
Q Consensus 118 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (687)
+++.+|.++.. .|++++|+..|+++++..|++......+..+... .+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------------~~~ 146 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------------RAK 146 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH------------------------HHH
Confidence 89999999999 9999999999999999999987653322111100 000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCC
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNR----------GDLESAIACYERCLAVSP 256 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~ 256 (687)
....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.++..+ |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 1222455566666666666666666666665555 344556666666544 555666666666666666
Q ss_pred Cc
Q 005626 257 NF 258 (687)
Q Consensus 257 ~~ 258 (687)
++
T Consensus 227 ~~ 228 (261)
T 3qky_A 227 DS 228 (261)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.1e-19 Score=180.08 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHH
Q 005626 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A 285 (687)
++++|+..|+++ |.++...|++++|+..|++++++.+... .....+.++..+|.++...|++++|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 4455566666666666666666533211 0112344555566666666666666
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 005626 286 VAYYKKALYYNWHY------ADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDK 352 (687)
Q Consensus 286 ~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 352 (687)
+.+|++++++.+.. ..++.++|.++... |++++|+.+|++++++.|.. ..++.++|.++..+|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 66666666655432 35678889999985 99999999999999887644 4678889999999999999
Q ss_pred HHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--HcCCH
Q 005626 353 AVECYQMALSIKPNFSQ-------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE-----AYNNLGVLYR--DAGSI 418 (687)
Q Consensus 353 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~ 418 (687)
|+.+|++++++.|++.. ++.++|.++..+|++++|+..|+++++++|+... .+..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999998877643 6788999999999999999999999998887654 3445666664 46789
Q ss_pred HHHHHHHHHHHhcCCCChhhh
Q 005626 419 SLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~a~ 439 (687)
++|+..|++++.++|......
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 999999999999888765443
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=2.7e-19 Score=177.24 Aligned_cols=213 Identities=16% Similarity=0.118 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (687)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (687)
+|.++++++-+.-+.....+ .++.. +++++|+..|+++ |.++...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45566666666554432111 11222 2477888887776 45677788888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHH
Q 005626 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYE 215 (687)
Q Consensus 143 l~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~ 215 (687)
+.+.+.... ....+.++.++|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|+
T Consensus 64 l~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 64 ADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 876543211 12235668888888888888888888888888876543 56788999999996 99999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHH
Q 005626 216 KAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (687)
Q Consensus 216 ~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~ 289 (687)
+++++.|.. ..++..+|.++..+|++++|+.+|++++++.|+...........+..+|.++...|++++|+..+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999987754 56789999999999999999999999999998865332223333444444444445555555555
Q ss_pred HHHHHhCCC
Q 005626 290 KKALYYNWH 298 (687)
Q Consensus 290 ~~al~~~p~ 298 (687)
+++++++|.
T Consensus 223 ~~al~l~p~ 231 (292)
T 1qqe_A 223 QEGQSEDPN 231 (292)
T ss_dssp HGGGCC---
T ss_pred HHHHhhCCC
Confidence 555555444
No 83
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2.1e-20 Score=187.84 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=152.7
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138 (687)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (687)
...|++++|.+++++. +++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3567788899888887 33468889999999999999999999764 4566888888888889999999998
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (687)
Q Consensus 139 ~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (687)
++.+.+..++ +. +...++.+|.+.|++.++.++++ .|+ ..++..+|..+...|+|++|..+|.++
T Consensus 84 l~~ark~~~~-~~-------i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 84 LQMARKKARE-SY-------VETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT-
T ss_pred HHHHHHhCcc-ch-------hHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 8888775333 22 25567777778888888887774 243 358888999999999999999999876
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC
Q 005626 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (687)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 298 (687)
..+..+|.++.++|++++|++.++++ +++..|.....++.. .|+++.|..+... +. .
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-------~~ef~lA~~~~l~-L~---~ 205 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-------GKEFRLAQMCGLH-IV---V 205 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-------TTCHHHHHHTTTT-TT---T
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-------cCcHHHHHHHHHH-HH---h
Confidence 46788899999999999999999888 345555555555544 5688888666554 22 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC-----CCHHHH
Q 005626 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKAVECYQMALSIKP-----NFSQSL 371 (687)
Q Consensus 299 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~~ 371 (687)
+++-...+...|.+.|++++|+.++++++.+++....++..+|.+|.+- ++..+.++.|...+.+.| ++...|
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444556788888889999999999999988888888888888887654 467777777777777767 677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAA------------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (687)
..+..+|...++++.|+...-+.... .+.+.+.++.....|. +...+++..+..++
T Consensus 286 ~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 88888888889998887765544322 4455677776666665 33444555555555
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1.4e-18 Score=192.52 Aligned_cols=182 Identities=14% Similarity=0.007 Sum_probs=161.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHH--------HhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVL--------EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (687)
....+..+ ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..++
T Consensus 394 ~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 470 (681)
T 2pzi_A 394 VAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLV 470 (681)
T ss_dssp TTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHH
Confidence 33444444 78899999999999999 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005626 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (687)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 199 (687)
+.+|.++...|++++|+..|+++++++|++..+ +..+|.++...|++++ +..|+++++.+|++..+++++|.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELAP-------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 999999999999999999999999999998776 6777888888899999 99999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
++..+|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999877665
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=2e-18 Score=158.16 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=165.3
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44566777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (687)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhh
Q 005626 426 EQCLKIDPDSRNA 438 (687)
Q Consensus 426 ~~al~~~p~~~~a 438 (687)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987644
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.81 E-value=1.5e-16 Score=172.76 Aligned_cols=388 Identities=7% Similarity=-0.029 Sum_probs=296.2
Q ss_pred cccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC---hHHHHHHHHHHHhcCC--CCHH
Q 005626 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDP--QNAC 117 (687)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~ 117 (687)
..+.+.+.+..++......+.++.+...|++++...|.....|...+......++ ++.+...|++++...| .+..
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3446788999999999999999999999999999999999999999999999999 9999999999999984 5777
Q ss_pred HHHHHHHHHHHcCCH----HH----HHHHHHHHHhc----CCCCHHHHHHHHHHHHHhH--HHHHHcCChHHHHHHHHHH
Q 005626 118 AHTHCGILYKDEGRL----VE----AAESYHKALSA----DPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYEA 183 (687)
Q Consensus 118 ~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~~~~~~~~~~la~~~~~lg--~~~~~~g~~~~A~~~~~~a 183 (687)
.|..........++. ++ ..+.|++++.. ++.....|........... .-+..+++.+.+..+|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888777666665543 33 44788888864 4555555443332211100 0001122344555555555
Q ss_pred HhhCCCCH------------------------------------------------------------------------
Q 005626 184 LKIDPHYA------------------------------------------------------------------------ 191 (687)
Q Consensus 184 l~~~p~~~------------------------------------------------------------------------ 191 (687)
+.......
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 54211110
Q ss_pred --HHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHH
Q 005626 192 --PAYYNLGVVYSELM-------QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIA 261 (687)
Q Consensus 192 --~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~ 261 (687)
..|......-...+ ..+.....|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 11111111111110 0233567899999999999999999999999999999997 9999999999988755
Q ss_pred HHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHhcCCHHHH
Q 005626 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----------NWH-----------YADAMYNLGVAYGEMLKFDMA 319 (687)
Q Consensus 262 ~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~g~~~~A 319 (687)
+..++... ...|++++|...|++++.. .|. ...+|...+.+..+.|..+.|
T Consensus 381 wl~~a~~e-------e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 381 AFSLSEQY-------ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp HHHHHHHH-------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 55444444 4467899999999999875 243 345788899999999999999
Q ss_pred HHHHHHHHhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 320 IVFYELAFHF-NPHCAEACNNLGVIYKDRDN-LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 320 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
..+|.++++. .+....+|...+.+....++ ++.|...|+++++..|+++..+...+......|+.+.|..+|++++..
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999988 55557788888888777654 899999999999999999999999999999999999999999999999
Q ss_pred CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 398 NP---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 398 ~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
.| ....+|..........|+.+.+...++++.+..|++..
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 88 35678888889999999999999999999999999754
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=6.6e-19 Score=195.18 Aligned_cols=188 Identities=14% Similarity=-0.014 Sum_probs=158.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (687)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (687)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34677777777766 77899999999999999 88899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 005626 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (687)
Q Consensus 257 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 336 (687)
++..++..++.++.. .|++++|+..|+++++.+|++..++.++|.++...|++++ +..|+++++++|++..+
T Consensus 465 ~~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a 536 (681)
T 2pzi_A 465 WRWRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA 536 (681)
T ss_dssp CCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH
Confidence 887776666655555 5688899999999999999888888999999999999988 88999999999999889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 005626 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (687)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 383 (687)
++++|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999888888888888877665
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=1.2e-19 Score=159.89 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=105.2
Q ss_pred hchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005626 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (687)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 351 (687)
||.++..+|++++|+..+++++...|+.+..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 45566666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005626 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 417 (687)
Q Consensus 352 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (687)
+|+.+|+++++++|+++.++.++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777777665554 477777777777777777777776664
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.79 E-value=1.7e-15 Score=164.63 Aligned_cols=357 Identities=11% Similarity=-0.028 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR---LVEAAESYH 140 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 140 (687)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......++ ++.+...|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHhHHHHHHcCCh--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHH----
Q 005626 141 KALSADP--SYKPAAECLAIVLTDLGTSLKLAGNT--------QDGIQKYYEALKI----DPHYAPAYYNLGVVYS---- 202 (687)
Q Consensus 141 ~al~~~~--~~~~~~~~la~~~~~lg~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---- 202 (687)
+++...| .+.+.|..... .....++. +...+.|++++.. ++....+|........
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~-------f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYIT-------YVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHH-------HHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHhcCCCCCHHHHHHHHH-------HHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999984 45555433222 22222332 3344778888764 5666777766665443
Q ss_pred -----HcCCHHHHHHHHHHHHHhCCCCHH-HHHHH-------------------------HHH-H---------------
Q 005626 203 -----ELMQYDTALGCYEKAALERPMYAE-AYCNM-------------------------GVI-Y--------------- 235 (687)
Q Consensus 203 -----~~g~~~~A~~~~~~al~~~p~~~~-~~~~l-------------------------a~~-~--------------- 235 (687)
.+++.+.+..+|++++........ .|... +.. +
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 344567788888888754211111 11000 000 0
Q ss_pred ------------------------------HHcCC---------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhh
Q 005626 236 ------------------------------KNRGD---------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (687)
Q Consensus 236 ------------------------------~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~ 276 (687)
....+ .+.....|++++...|.++..|...+..+..
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~----- 355 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE----- 355 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----
Confidence 00000 1223456777777777777777666655544
Q ss_pred hhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------CCC-----------C
Q 005626 277 KLEGDINQGV-AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------NPH-----------C 333 (687)
Q Consensus 277 ~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~-----------~ 333 (687)
.|+.++|. ..|++++...|.+...+..++.+....|++++|..+|++++.. .|. .
T Consensus 356 --~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 356 --KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp --HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 45677886 8899999888988888888888888899999999999988874 242 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGK-MDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
..+|...+.+..+.|+.+.|...|.+|++. .+....++...+.+....++ .+.|.+.|+++++..|+++..+...+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 457888888888888889999999999887 44456777777777766654 8899999999999999888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 005626 412 YRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
....|+.+.|...|++++...|+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCC
Confidence 88889999999999999988874
No 90
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.3e-19 Score=182.28 Aligned_cols=289 Identities=15% Similarity=0.134 Sum_probs=148.7
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcC
Q 005626 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (687)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g 171 (687)
....|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ ++... +...+..+...|
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~-------y~~V~~~ae~~g 75 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSS-------YMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHH-------HHHHHHHHHhCC
Confidence 44678899999999998 34569999999999999999999999874 22223 666777888899
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (687)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (687)
++++|+.+++.+.+..++ +.+...++.+|.+.|+++++.++++. |+ ..++..+|..+...|++++|..+|.++
T Consensus 76 ~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 76 NWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999998885444 77888999999999999999988853 43 469999999999999999999999987
Q ss_pred HhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005626 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (687)
Q Consensus 252 l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 331 (687)
+ . +..++.++...|++++|++.++++ .++.+|...+.++...|+++.|..+... +..+
T Consensus 149 ----~----n-------~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~- 206 (449)
T 1b89_A 149 ----S----N-------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH- 206 (449)
T ss_dssp ----T----C-------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC-
T ss_pred ----h----h-------HHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC-
Confidence 1 2 344555555567999999999999 4789999999999999999999877765 2244
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CcHHH
Q 005626 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEA 404 (687)
Q Consensus 332 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~ 404 (687)
++-...+..+|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| +++..
T Consensus 207 --ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 --ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred --HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44455788999999999999999999999999999999999999876 5678888888887777777 77788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 405 YNNLGVLYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~a 428 (687)
|..+..+|...++++.|+...-+.
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhchHHHHHHHHHhC
Confidence 999999999999999999865554
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=2.5e-18 Score=160.86 Aligned_cols=172 Identities=14% Similarity=0.092 Sum_probs=140.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh----------------HHHHHHHhCChHHHHHHHHHHHh
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG----------------KGICLQMQNMGRLAFDSFSEAVK 110 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (687)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005626 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (687)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (687)
++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+++..|. +....+...+.+++...| .
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~ 156 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-----QEKKKLETDYKKLSSPTK-M 156 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-----HHHHHHHHHHC---CCCH-H
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhCCCc-h
Confidence 9999999999999999999999999999999999999998875444444433321 234556667776654322 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 224 (687)
..+++.+|.++...|++++|+..|+++++++|+.
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 3467778888888888888888888888888863
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.7e-18 Score=162.04 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=147.1
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005626 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNPH 332 (687)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (687)
+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++++|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3445556666889999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|+ .+.+...+++++...| ...+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987764 4566777777754332 2347888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 411 LYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
++...|++++|+.+|+++++++|+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999853
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1.5e-17 Score=152.14 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=116.2
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 161 (687)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~ 80 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-------AT 80 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-------HH
Confidence 34555666666666666666666666666666666666666666666666666666666666666665443 44
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence 55555566666677777777776667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCc
Q 005626 242 ESAIACYERCLAVSPNF 258 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~ 258 (687)
++|+..++++++..|++
T Consensus 161 ~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 161 EEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 77777777777766654
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=4.5e-17 Score=154.46 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=159.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHH---HHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AHT 120 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (687)
.++.++.+|..++..|+|++|+..|+++++..|.+. .+++.+|.+++..|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 567899999999999999999999999999998864 78999999999999999999999999999999865 789
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005626 121 HCGILYKD------------------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (687)
Q Consensus 121 ~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (687)
.+|.++.. .|++++|+..|+++++..|++..+... ...++.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a----~~~l~~~~~~------------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA----TKRLVFLKDR------------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH----HHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH----HHHHHHHHHH-------------
Confidence 99999876 579999999999999999998765332 1112111100
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005626 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (687)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (687)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|++.++++....|++.
T Consensus 146 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 122346788999999999999999999999998875 6799999999999999999999999988888754
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=1.3e-18 Score=153.18 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005626 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (687)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (687)
|.++..+|++++|+..+++++..+|+++..++.+|.+|+..|++++|++.|+++++++|+++.++..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 33444444445555555544444444444444455555555555555555555555555444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK-YYEALKIDPHYAPAYYNLGVVYSELM 205 (687)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g 205 (687)
|+..|+++++++|++..+ +..+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 84 A~~~~~~al~~~p~~~~~-------~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDL-------VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444333 33444444444444333332 24444444444444444444443333
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=4.6e-16 Score=152.69 Aligned_cols=198 Identities=11% Similarity=0.040 Sum_probs=158.5
Q ss_pred HHHHHhCCCHH-HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC----------hHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 55 ANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 55 a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.....+.|++. +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34445667776 78999999999999999999999999888776 68899999999999999999999999
Q ss_pred HHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 124 ILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (687)
Q Consensus 124 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (687)
.++...++ +++++.++.++++.+|.+..++. ..+.+....|. ++++++++.++++.+|.+..+|..++.+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~-------~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l 188 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWD-------YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHH-------HHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99988884 88999999999999999888744 44444445566 5889999999999999999999999888
Q ss_pred HHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcC
Q 005626 201 YSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----------GDLESAIACYERCLAVS 255 (687)
Q Consensus 201 ~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~ 255 (687)
+... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 8877 4578888888888888888888887665555544 34566666666666666
Q ss_pred CCcH
Q 005626 256 PNFE 259 (687)
Q Consensus 256 ~~~~ 259 (687)
|++.
T Consensus 269 pd~~ 272 (331)
T 3dss_A 269 PENK 272 (331)
T ss_dssp TTCH
T ss_pred cccc
Confidence 6653
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=4.2e-18 Score=167.67 Aligned_cols=226 Identities=18% Similarity=0.230 Sum_probs=177.1
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHH
Q 005626 203 ELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIAL 269 (687)
Q Consensus 203 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~ 269 (687)
..|++++|+.+++++++. .|....++..+|.++...|++++|+..++++++.. ++.+ ..+.++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 88 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAATL 88 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHHH
Confidence 356666666666666653 24557788889999999999999999999988774 2222 235567
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 005626 270 TDLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (687)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~ 333 (687)
..+|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.+++++++. .|..
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 77888888899999999999999988 4566789999999999999999999999999998 6667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhC
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGK------MDAAAEMIEKAIAAN 398 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~ 398 (687)
..++..+|.++...|++++|+.++++++++ .+.....+..++..+...+. +.++...++......
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999987 44556677777777766554 334444444433345
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (687)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (687)
|....++..+|.+|..+|++++|..+|++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6667899999999999999999999999999763
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=4.8e-17 Score=154.27 Aligned_cols=209 Identities=12% Similarity=0.079 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKN 263 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 263 (687)
.+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++..|++.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35566777777777777777777777777777665 356777777777777777777777777777777653 344
Q ss_pred HHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (687)
Q Consensus 264 ~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 343 (687)
.++.++..++. .....+..++..+...|++++|+..|+++++..|++..+...+..+
T Consensus 83 ~~g~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 83 MRGLTNMALDD-----------------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHC-------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHhhhh-----------------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 44444433321 0112234456666677788888888888888888776554322221
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHH
Q 005626 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISL 420 (687)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~ 420 (687)
....+ ........+|.++...|++++|+..|+++++..|+++ ++++.+|.++..+|++++
T Consensus 140 ~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 VFLKD-----------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-----------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 11110 0122346788999999999999999999999998875 679999999999999999
Q ss_pred HHHHHHHHHhcCCCChhh
Q 005626 421 AIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 421 A~~~~~~al~~~p~~~~a 438 (687)
|++.++++....|++..-
T Consensus 203 A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 203 AEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHhhCCCchhh
Confidence 999999999988887543
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=3.7e-16 Score=153.31 Aligned_cols=227 Identities=11% Similarity=0.038 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGD----------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~ 278 (687)
+|+..+.+++..+|++..+|+..+.++...++ +++++.+++.++..+|++..+|.....++..++.
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~---- 123 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE---- 123 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS----
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc----
Confidence 44555555555555555555555444444433 4566666666666666666666666555555431
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---------- 347 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------- 347 (687)
..+++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 124 -~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 124 -PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp -CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred -ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 135666666666666666666667666666666666 46777777777777777777777777776665
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 348 ----DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 348 ----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.+++++++.|++..++..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4577888888888888888888887666665554 4578899999999999998866655554443
Q ss_pred H---HcCCHHHHHHHHHHHHhcCCCChhhhh
Q 005626 413 R---DAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (687)
Q Consensus 413 ~---~~g~~~~A~~~~~~al~~~p~~~~a~~ 440 (687)
. ..|..++...++.+..++||-....+.
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 2 357788999999999999998655443
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=5.3e-18 Score=166.89 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=133.0
Q ss_pred hCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 005626 95 QNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLT 161 (687)
Q Consensus 95 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~ 161 (687)
.|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++.. ++.+. .+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----VAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHH
Confidence 45666666666666653 25567788889999999999999999999988774 33333 356789
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 005626 162 DLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYA 225 (687)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 225 (687)
.+|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999988 4667889999999999999999999999999998 66678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 226 EAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
.++..+|.++...|++++|+..++++++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=1.3e-17 Score=141.70 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=78.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 005626 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (687)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (687)
.++|+.++.+.++|..+++.|++++|++.|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++..++++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
+|.++..+|++++|++.|+++++++|++..++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 66666666666666666666666666666665543
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=1.5e-17 Score=141.24 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=115.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (687)
Q Consensus 292 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (687)
+..++|+.++.+..+|..+++.|++++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
.++|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998874
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=2.7e-15 Score=147.74 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=152.5
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-G- 239 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g- 239 (687)
+..+....+..++|++.+.+++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...+.++... +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3334445566789999999999999999999999999999999 599999999999999999999999999999998 8
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhh-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Q 005626 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--- 315 (687)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--- 315 (687)
+++++++++.++++.+|++..+|.....++..++.... ....+.+++++++++++.+|.+..+|..++.++...++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 89999999999999999999999999988888763210 00113477778888888888888888888877777775
Q ss_pred ----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 316 ----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (687)
Q Consensus 316 ----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 349 (687)
++++++++++++..+|++..+|+.+..++...|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 5677777777777777777777776666666554
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=7.3e-16 Score=151.74 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
.++..+..+....+..++|++.+++++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|.....++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444455555556677789999999999999999999999999999999 5999999999999999999999999988888
Q ss_pred HhchhhhhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 271 DLGTKVKLEG-DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--------MAIVFYELAFHFNPHCAEACNNLG 341 (687)
Q Consensus 271 ~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la 341 (687)
.+. + +++++++.+.++++.+|.+..+|...+.+....+.++ +++++++++++.+|.+..+|..++
T Consensus 135 ~l~------~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 135 RIS------PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp HHC------CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred Hhc------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 762 3 6789999999999999999999999999999998888 999999999999999999999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHH
Q 005626 342 VIYKDRDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------------DAAAEMIEKA 394 (687)
Q Consensus 342 ~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~a 394 (687)
.++...++ ++++++++++++.++|++..+|..+..++...|+. .+-.......
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 99999987 79999999999999999999999999999887764 2222222222
Q ss_pred HHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCChhhhhh
Q 005626 395 IAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KIDPDSRNAGQN 441 (687)
Q Consensus 395 l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~ 441 (687)
+... +....++..|+.+|...|+.++|.++++... +.||-....+..
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 2222 4668899999999999999999999999987 678875555443
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=8.6e-18 Score=146.93 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=105.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
..++++++++|++..+++.+|.++...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998865
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=1.6e-16 Score=158.49 Aligned_cols=203 Identities=21% Similarity=0.175 Sum_probs=110.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (687)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (687)
.|++++|.++++++.+..+.. ++. .+++++|+..|.++ |.++...|++++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 467788888888887765542 111 47888888888775 56777888888888888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCCHHHHHHH
Q 005626 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--Y----ADAMYNLGVAYGEMLKFDMAIVF 322 (687)
Q Consensus 249 ~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 322 (687)
.+++++.+.... ....+.++..+|.++...|++++|+.+|++++++.+. + ..++.++|.++.. |++++|+.+
T Consensus 60 ~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 888876543221 1223445555555555555666666666665554321 1 2344445555544 555555555
Q ss_pred HHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 005626 323 YELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEM 390 (687)
Q Consensus 323 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 390 (687)
|++++++.+.. ..++.++|.++..+|++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555443321 2344444444444444444444444444443221 12334444444444444444444
Q ss_pred HHHHHHhCC
Q 005626 391 IEKAIAANP 399 (687)
Q Consensus 391 ~~~al~~~p 399 (687)
|++++ ++|
T Consensus 218 ~~~al-~~p 225 (307)
T 2ifu_A 218 VRESY-SIP 225 (307)
T ss_dssp HHHHT-TST
T ss_pred HHHHh-CCC
Confidence 44444 444
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=5.3e-17 Score=147.42 Aligned_cols=168 Identities=13% Similarity=-0.003 Sum_probs=110.7
Q ss_pred CCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (687)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 158 (687)
|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 333445556666666666666666666666666666666666666666666666666666666666666 4433211111
Q ss_pred HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 005626 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYK 236 (687)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 236 (687)
+. +...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++.
T Consensus 82 ~~------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LE------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HH------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HH------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 10 1111233346778888888888888888888888888888888888888888888764 557888888888
Q ss_pred HcCCHHHHHHHHHHHHh
Q 005626 237 NRGDLESAIACYERCLA 253 (687)
Q Consensus 237 ~~g~~~~A~~~~~~al~ 253 (687)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 88888888888887764
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=8.9e-17 Score=160.32 Aligned_cols=206 Identities=17% Similarity=0.130 Sum_probs=171.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCH
Q 005626 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (687)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 282 (687)
..|++++|.++++++.+..+.. .+...+++++|...|.++. .++...|++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a~---------------------~~~~~~g~~ 52 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKAA---------------------VAFKNAKQL 52 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHHH---------------------HHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHHH---------------------HHHHHcCCH
Confidence 3578899999999998876642 1111588999999988762 234446899
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCH
Q 005626 283 NQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNL 350 (687)
Q Consensus 283 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 350 (687)
++|+..|.++++..+.. ..++..+|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++
T Consensus 53 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 99999999999886432 458899999999999999999999999988432 25688999999999 999
Q ss_pred HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCH
Q 005626 351 DKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSI 418 (687)
Q Consensus 351 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 418 (687)
++|+.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++++.|++ ..++..+|.++..+|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 99999999999987653 5689999999999999999999999999986543 35788999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhhh
Q 005626 419 SLAIDAYEQCLKIDPDSRNAGQ 440 (687)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~a~~ 440 (687)
++|+.+|++++ ++|+......
T Consensus 212 ~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHh-CCCCCCCCHH
Confidence 99999999999 9998765543
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=2.9e-16 Score=154.76 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=156.4
Q ss_pred CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (687)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 157 (687)
.|.+.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~----- 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ----- 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH-----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH-----
Confidence 488899999999999999999999999999999999999999999999999999999999999999999954322
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIY 235 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 235 (687)
....+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++
T Consensus 188 --~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 --GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp --HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 44555566777889999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 005626 236 KNRGDLESAIACYERCLA 253 (687)
Q Consensus 236 ~~~g~~~~A~~~~~~al~ 253 (687)
...|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999875
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=7.5e-17 Score=146.41 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=147.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc
Q 005626 128 -DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSEL 204 (687)
Q Consensus 128 -~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 204 (687)
..++..+|+..++++++.+|++... +..+|.++...|++++|+..|+++++.+|+. ..++..++.++...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFEL-------ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 3334456899999999999999876 7778888889999999999999999999875 66999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 005626 205 MQYDTALGCYEKAAL 219 (687)
Q Consensus 205 g~~~~A~~~~~~al~ 219 (687)
|+.++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=4.7e-16 Score=153.20 Aligned_cols=168 Identities=10% Similarity=0.028 Sum_probs=144.3
Q ss_pred CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 005626 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335 (687)
Q Consensus 256 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 335 (687)
|+....+.. +|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+...
T Consensus 114 p~~~~~~~~-------~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 114 PREEELXAQ-------QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp CCHHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred CCchhhHHH-------HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 665554444 4444445679999999999999999999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYR 413 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 413 (687)
.....+..+...++.++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ..++.+++.++.
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 777777778888888889999999999999999999999999999999999999999999999988 888999999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 005626 414 DAGSISLAIDAYEQCLK 430 (687)
Q Consensus 414 ~~g~~~~A~~~~~~al~ 430 (687)
.+|+.++|...|++++.
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 99999999999988875
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=5.9e-17 Score=154.19 Aligned_cols=220 Identities=10% Similarity=0.000 Sum_probs=176.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC--
Q 005626 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-- 299 (687)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-- 299 (687)
+..|.-+ ..+++.+|.+.|.+++.++|+..++|..+ +.++..+. +..+++..+++.+.+.|..
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~-------r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW-------YSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH-------HTGGGTTHHHHTTTCCGGGGC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH-------HHHHHHHHHHHHhcCChhhhh
Confidence 3344444 57888888888888888888888888877 56666654 5566777777777765543
Q ss_pred -------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 300 -------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (687)
Q Consensus 300 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (687)
.++...++.++...|++++|.+.|+.++...|++. ..+.+|.++.+.+++++|+.+|+++
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 34566789999999999999999999999999888 9999999999999999999999988
Q ss_pred HhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 361 LSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 361 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
.+..+.. ..+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++.++|+.++|...|++++..+|+
T Consensus 162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 7753221 3589999999999999999999999998654 55 6789999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhccCCChHHHHH
Q 005626 436 RNAGQNRLLAMNYINEGHDDKLFE 459 (687)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~ 459 (687)
..+. ..+....|...-+..+.++
T Consensus 241 ~~~~-~aL~~~~~~~~~t~~~~i~ 263 (282)
T 4f3v_A 241 PKVA-AALKDPSYRLKTTTAEQIA 263 (282)
T ss_dssp HHHH-HHHHCTTCCCCCCCHHHHH
T ss_pred HHHH-HHHhCCCCCCCCCcHHHHH
Confidence 5544 3445555555555554433
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=9.4e-17 Score=140.31 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=111.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|.++|.++...|++++|+.+|+++++++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005626 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
+++.+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999865
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=6.1e-16 Score=168.69 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (687)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (687)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 005626 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA 217 (687)
Q Consensus 141 ~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 217 (687)
++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|++.++++
T Consensus 82 ~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGI-------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999988665 677788888889999999999999999999999999999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 005626 218 ALERPMYAEAYCNMG 232 (687)
Q Consensus 218 l~~~p~~~~~~~~la 232 (687)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999988877776665
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.67 E-value=3.8e-17 Score=164.83 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=160.8
Q ss_pred cCCHHHHHHHHHH----HHhcCCCcHHHHHHHHHHHHHhchhh------------hhcCCHHHHHHHHHHHHHhCCCCHH
Q 005626 238 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 301 (687)
Q Consensus 238 ~g~~~~A~~~~~~----al~~~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~~A~~~~~~al~~~p~~~~ 301 (687)
.+.+++|+..++. ++.+.|+.. +...|... ...+++++|+..+++++...|....
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~a---------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYA---------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTT---------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCccc---------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 3456777777777 666766641 22233221 1456778888888888888898999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (687)
++..+|.++...|++++|+..|++++++.|.+ ..++.++|.++..+|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 431 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 431 (687)
++.+++++|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 5677777754
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=4.4e-16 Score=136.44 Aligned_cols=119 Identities=10% Similarity=-0.006 Sum_probs=106.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
..|++++.++|++...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45778888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
++.+++++|.++..+|++++|+..|+++++++|+++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999998877553
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=3.7e-16 Score=148.67 Aligned_cols=207 Identities=16% Similarity=0.100 Sum_probs=178.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhH-------HHHHHHhCChHHHHHHHHHHHhcCCCCHH---
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-------GICLQMQNMGRLAFDSFSEAVKLDPQNAC--- 117 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 117 (687)
...++..|.-+ ..+++.+|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|....
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 45677778776 68999999999999999999999999999 89999999999999999999998876433
Q ss_pred ------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH
Q 005626 118 ------------------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (687)
Q Consensus 118 ------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (687)
+...++.++...|++++|.+.|..++...|++. . .+.+|.++...+++++|+..
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~-------~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V-------AWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H-------HHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H-------HHHHHHHHHHcCCHHHHHHH
Confidence 344588999999999999999999988777654 3 67788899999999999999
Q ss_pred HHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 180 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (687)
Q Consensus 180 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (687)
|+++....+.. ..+++.+|.++..+|++++|+.+|++++... |. ..++++.+|.++..+|+.++|...|++++..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99876653221 4589999999999999999999999998654 55 6679999999999999999999999999999
Q ss_pred CCCcHHHHHH
Q 005626 255 SPNFEIAKNN 264 (687)
Q Consensus 255 ~~~~~~~~~~ 264 (687)
+|+ ..+...
T Consensus 238 ~P~-~~~~~a 246 (282)
T 4f3v_A 238 HPE-PKVAAA 246 (282)
T ss_dssp SCC-HHHHHH
T ss_pred CCc-HHHHHH
Confidence 998 655443
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=1e-14 Score=125.28 Aligned_cols=135 Identities=41% Similarity=0.645 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
.++..+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+.+++++++..|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
.|++++|+..++++++..|++..++..+|.++...|++++|..+++++++.+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=2.8e-14 Score=133.54 Aligned_cols=175 Identities=15% Similarity=0.058 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhh---cCCHHHH
Q 005626 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL---EGDINQG 285 (687)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~A 285 (687)
+|+++|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+...+ |.++.. ..++++|
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~l-------g~~y~~~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALL-------AQLKIRNPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHH-------HHHTTSSTTSCCHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH-------HHHHHcCCCCCCHHHH
Confidence 344555555543 44555555555555555555555555555443 222222222 222222 0144444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHH
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKAVE 355 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~ 355 (687)
+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .+++++|+.
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 444444432 2344555555555554 4555555555555555544 224555555555555 445555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 005626 356 CYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 397 (687)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 397 (687)
+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55555554 34444555555555432 1 455555555555544
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=1e-16 Score=161.62 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=167.9
Q ss_pred hCCCHHHHHHHHHH----HHHhCCCCHHHHHhHHHHHH------------HhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 60 SRNKFVDALALYEI----VLEKDSGNVEAHIGKGICLQ------------MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 60 ~~g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
..+.+++|+..++. ++...|.. ++..+|.... .++++++|+..++++++.+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578889888888 78888876 4555554432 567888999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (687)
.++...|++++|+..|++++++.|.+. ......+.++.++|.++...|++++|+..|+++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999873 122223556899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 005626 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAV 254 (687)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 254 (687)
.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ...|++++..
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5567776653
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=6.5e-16 Score=135.32 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=114.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
-..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
+++.+++++|.++..+|++++|+..|++++++.|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999998876543
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=1.9e-14 Score=134.74 Aligned_cols=177 Identities=14% Similarity=0.037 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHH
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML----KFD 317 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~ 317 (687)
.+|+..|+++.+. .++.+...++.+ +...+++++|+.+|+++.+. .++.+++.+|.+|.. + +++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~-------~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADT-------WVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHH-------HHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHH
Confidence 4678889998875 555555555544 44478999999999999875 589999999999998 7 899
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 005626 318 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTV----QGKMDAA 387 (687)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A 387 (687)
+|+.+|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++.+..+ .++.++++||.+|.. .+++++|
T Consensus 71 ~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 71 QARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999965 5789999999999998 8999999999999999988 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 005626 388 AEMIEKAIAANPTYAEAYNNLGVLYRDA-G-----SISLAIDAYEQCLKIDP 433 (687)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p 433 (687)
+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66788999999999864 3 89999999999998754
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=1.7e-15 Score=148.66 Aligned_cols=196 Identities=11% Similarity=0.003 Sum_probs=163.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
.+..+..+|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
...|++++|+..|+++++++|++............ ...++...........+.+..+...++.++ .|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 99999999999999999998876432111111111 122223333334455777778877777765 699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 005626 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (687)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (687)
+++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999888888888877776 7789999999988764
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.62 E-value=2.4e-15 Score=131.00 Aligned_cols=119 Identities=10% Similarity=0.008 Sum_probs=99.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
++.+++++|.++..+|++++|+.+|+++++++|+++...
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 888888888888888888888888888888888876554
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=2.9e-15 Score=130.38 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (687)
Q Consensus 287 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (687)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788889899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005626 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (687)
++.+++++|.++...|++++|+..|++++++.|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999987766555444433
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=5.8e-15 Score=144.84 Aligned_cols=198 Identities=16% Similarity=0.101 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005626 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (687)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 268 (687)
.++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------ 69 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------------ 69 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------------
Confidence 34555555666666666666666666666666665555566666666555555555555555555544
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (687)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (687)
++..+++.+|.++...|++++|+..|+++++++|++...+........
T Consensus 70 -----------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--- 117 (281)
T 2c2l_A 70 -----------------------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--- 117 (281)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---
T ss_pred -----------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---
Confidence 455566667777777777777777777777776654322222222221
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQ 427 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 427 (687)
+..++...........+.+..+...++.++ .|++++|++.++++++.+|++......++.++... +.+++|.+.|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 118 RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333344444456677777777777765 68899999999999999998888888888777776 778889999998
Q ss_pred HHhcC
Q 005626 428 CLKID 432 (687)
Q Consensus 428 al~~~ 432 (687)
+.+..
T Consensus 196 a~~~~ 200 (281)
T 2c2l_A 196 VDEKR 200 (281)
T ss_dssp SSCTT
T ss_pred hhccc
Confidence 87643
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=5.5e-14 Score=131.82 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 381 (687)
.++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+.+|+++++++|++..++.++|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46788999999999999999999985 33 6889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 382 GKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
|++++|+..|+++++..|++. .+++++|.++..+|++++|+.+|+++++++|++..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999887765 99999999999999999999999999999998743
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.5e-14 Score=120.69 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 005626 381 QGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLY 412 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 412 (687)
+|++++|+..|+++++++ |++..++..++.+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 555555555555555555 44444444444443
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=9.5e-14 Score=119.12 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.1
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (687)
++..+|..+...|++++|+..++++++..|.+...+..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34556666777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005626 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (687)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (687)
|++++|+..++++++..|.+..++..+|.++...|++++|...+++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999886
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.58 E-value=1.1e-14 Score=132.15 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=113.2
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 005626 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAA 387 (687)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A 387 (687)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567888899999999999999999999999999999999999999999999999999999999999 7889998 999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999999999999999999999999999999999987543
No 131
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.57 E-value=1.6e-13 Score=132.33 Aligned_cols=188 Identities=10% Similarity=-0.046 Sum_probs=133.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (687)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (687)
|+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67788887776666677778999999999999999999999999887 7899999999999999999999999999999
Q ss_pred cCCC----cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005626 254 VSPN----FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (687)
Q Consensus 254 ~~~~----~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (687)
.+|+ +......++.++..+. ...+++.+|...|+++.+..|+ ....+++ ++..+|++++|...++.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~---~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFA---TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH---HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 8883 2334444444433332 1123677777777777666665 2222222 6666667776666666555
Q ss_pred hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005626 328 HF----------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (687)
Q Consensus 328 ~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (687)
+. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 54 35566666666666666665 66666666666666665543
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.57 E-value=2.2e-11 Score=128.73 Aligned_cols=371 Identities=9% Similarity=-0.047 Sum_probs=257.2
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC-hHHHHHHHHHHHhc---CCCCHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKL---DPQNACAHTH 121 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 121 (687)
..++..+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. ++.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4677888889888888999999999999999888 78888888887777763 45577788888874 6778888888
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHh------HHHHHHcCChHHHHHHHHHHHhhCCC-
Q 005626 122 CGILYK----DEGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDL------GTSLKLAGNTQDGIQKYYEALKIDPH- 189 (687)
Q Consensus 122 la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~-~la~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~- 189 (687)
....+. ..++.+.+...|++++..-..+.+... .....-... .......+.+..|...|+.+....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 877654 356788999999999995333222111 000000000 00111223445556666655544322
Q ss_pred CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005626 190 YAPAYYNLGVVYSEL--MQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (687)
Q Consensus 190 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (687)
+...|......-... +- .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 344555544432221 11 345678999999999999999999999999999999999999999999 9876555
Q ss_pred HHHHHHHHHhchhhhhcCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 005626 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKA------LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (687)
Q Consensus 263 ~~l~~~~~~l~~~~~~~~~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 336 (687)
...+... .+... ++.....+... ....+....+|...+....+.+..+.|...|+++ ...+....+
T Consensus 250 ~~y~~~~-e~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v 321 (493)
T 2uy1_A 250 LYYGLVM-DEEAV------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHV 321 (493)
T ss_dssp HHHHHHT-TCTHH------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHH
T ss_pred HHHHhhc-chhHH------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHH
Confidence 4332220 11100 11111100000 0000112356777888887888899999999999 433345667
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 337 CNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 337 ~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
+...|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +.....|......-...
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 777777766666 5999999999999999999888888888888999999999999987 45677888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 005626 416 GSISLAIDAYEQCLK 430 (687)
Q Consensus 416 g~~~~A~~~~~~al~ 430 (687)
|+.+.+...+++++.
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998998885
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.9e-14 Score=120.41 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 332 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCChhhhhhH
Q 005626 412 YRDAGSISLAIDAYEQCLKID------PDSRNAGQNR 442 (687)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~~ 442 (687)
+..+|++++|+..|+++++++ |++..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 999999999999999999999 7776665543
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.4e-14 Score=155.61 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchh---hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CH
Q 005626 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--KF 316 (687)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~ 316 (687)
++|++.+.+++..+|++..+|...+.++..++.. ......+++++..++++++.+|++..+|...+.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 4556666666666666666666666555554410 000112899999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------
Q 005626 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------------- 381 (687)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------- 381 (687)
+++++.++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 99999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhcCCCC
Q 005626 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQCLKIDPDS 435 (687)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 435 (687)
+.+++|++++.+++..+|++..+|+.++.++...+++++ |+.+|.+++.++|+.
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999998766 566678888888764
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=1.3e-13 Score=123.43 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (687)
Q Consensus 300 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 379 (687)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhc
Q 005626 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGV--LYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 431 (687)
..|++++|+.+++++++.+|++..++..++. .+...|++++|+..++++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999988888755444 478889999999988887654
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.55 E-value=6.3e-14 Score=125.33 Aligned_cols=114 Identities=27% Similarity=0.376 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
+.++..+..+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 005626 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~ 444 (687)
++..+|++++|+.+|+++++++|++..++.+..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887655443
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=1.1e-13 Score=129.69 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=133.1
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (687)
.++.+|..+...|++++|+..|++++ . .++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45667777777899999999999985 3 37889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 348 DNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
|++++|+..|+++++..|.+. .++.++|.++...|++++|+..|++++++.|++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--------- 155 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR--------- 155 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG---------
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc---------
Confidence 999999999999999888776 8999999999999999999999999999999862
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC
Q 005626 412 YRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p 433 (687)
.+..++|+..+++.....|
T Consensus 156 ---~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ---HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ---GGHHHHHHHHHHTTCCCCC
T ss_pred ---cchHHHHHHHHHhcccccc
Confidence 3455666666665544433
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=3e-13 Score=133.77 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005626 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (687)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 303 (687)
....+...+..+...|++++|++.++++++..+...... .... .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-~~~~----------------------------------~~ 118 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQ----------------------------------WQ 118 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-HHHH----------------------------------HH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-HHHH----------------------------------HH
Confidence 344556677788888888888888888888776543221 1112 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCH----HH
Q 005626 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMAL---SIKPNFS----QS 370 (687)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~ 370 (687)
+.+|.++...|++++|+..++++++..+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 334555555556666666666665543222 4466677777777777777777777776 3344432 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 005626 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLA-IDAYEQCLKID 432 (687)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 432 (687)
+.++|.+|..+|++++|+.++++++++.++ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 777777777777777777777777766422 256777788888888888888 67777777664
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=5.1e-14 Score=127.76 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=119.9
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 005626 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 352 (687)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 352 (687)
+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
|+.+++++++.+|++..++..+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875544
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=118.45 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (687)
|.....+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005626 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (687)
++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
No 141
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=2.3e-13 Score=131.16 Aligned_cols=246 Identities=13% Similarity=-0.017 Sum_probs=186.9
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005626 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (687)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (687)
..+-.|+|..++.-. -+..|.+ ......+.++|..+|++.... . .+....+...++..+. ++ |
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT--TT---C
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc--cc---H
Confidence 345679999999843 3344433 456667788889999887521 1 2222334444454442 22 8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 005626 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVF 322 (687)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~ 322 (687)
+..+++.++..+....... .+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~-------~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELY-------LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHH-------HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHH-------HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899988877544443333 445555557899999999999999887 7889999999999999999999999
Q ss_pred HHHHHhhCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 323 YELAFHFNPH------CAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 323 ~~~al~~~p~------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
++++.+.+|+ .......-+++....| ++.+|...|+++.+..|+ ....+++ ++..+|++++|...++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9999999983 2333333455566666 999999999999988887 3444444 8999999999999999
Q ss_pred HHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 005626 393 KAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (687)
Q Consensus 393 ~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (687)
++++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++...
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 87776 48899999999999999998 89999999999999998553
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.54 E-value=2.9e-13 Score=133.89 Aligned_cols=177 Identities=12% Similarity=0.015 Sum_probs=148.4
Q ss_pred CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005626 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (687)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (687)
+|.....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+..+++++...+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556777888999999999999999999999877654 34667888999999999999999999987665433
Q ss_pred HHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 005626 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL---KIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM- 223 (687)
Q Consensus 152 ~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 223 (687)
.. ..+.++..+|.++...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+++++++..+.
T Consensus 151 ~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VY-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TT-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 22 246679999999999999999999999999 4456543 68999999999999999999999999987532
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 005626 224 -----YAEAYCNMGVIYKNRGDLESA-IACYERCLAVS 255 (687)
Q Consensus 224 -----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 255 (687)
...++.++|.++..+|++++| ..++++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 278899999999999999999 88899988653
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.4e-13 Score=145.88 Aligned_cols=168 Identities=10% Similarity=0.042 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Q 005626 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 348 (687)
Q Consensus 280 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 348 (687)
...++|++.+++++..+|++..+|...+.++...|+ ++++++.++++++.+|++..+|...+.++...+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 456789999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------
Q 005626 349 -NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----------- 415 (687)
Q Consensus 349 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------- 415 (687)
++++++++++++++++|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---CCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 005626 416 ---GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (687)
Q Consensus 416 ---g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~~ 447 (687)
+.+++|++++.+++.++|++..++..+...+.
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 66899999999999999999999887665543
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.54 E-value=4.4e-14 Score=121.29 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAA----- 397 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 397 (687)
..+.++|..++..|++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44556666666666677777777777666666 33 38899999999999999999999999999
Q ss_pred --CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 398 --NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 398 --~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
+|++..+| +++|.++..+|++++|+..|+++++++|++......
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999998766544
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=2.1e-13 Score=134.86 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=123.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH------HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC------H
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------A 116 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 116 (687)
..+...+..++..|+|++|+..++++++..+.... .+..+|.++...+++++|+..++++++..+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34556788999999999999999999998776654 33458888888899999999999999965443 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 005626 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (687)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (687)
.++..+|.+|...|++++|+.+|+++++............+.++.++|.++...|++++|+.+++++++..+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 37899999999999999999999999964322111222345556667777777777777777777666653222
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQ-YDTALGCYEKAAL 219 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 219 (687)
+.+++.+|.++..+|+ +++|+.++++++.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5566666666666663 4666666666654
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=1.5e-14 Score=133.92 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 342 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 342 (687)
.+.++++.+.++......+.....+..+|..+...|++++|+..|+++++..|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34566665555554444455567788889999999999999999999999888876 88899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005626 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (687)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (687)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred -HHHHHHH
Q 005626 423 -DAYEQCL 429 (687)
Q Consensus 423 -~~~~~al 429 (687)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.52 E-value=1.4e-13 Score=117.32 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (687)
|.....+..+|..+...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 33456788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005626 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (687)
++...|++++|+..++++++..|++..++..++.++..+|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888898888888888888888888888888888764
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.52 E-value=1.6e-13 Score=116.47 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=100.9
Q ss_pred CHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 160 (687)
.+.++..+|..++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++++|++...+..++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999888877777788889
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (687)
..+|.++...|++++|+..|++++...|+ ++....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 99999999999999999999999988775 444433
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.52 E-value=1.5e-13 Score=122.91 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (687)
+.....+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+.+|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
++..+|++++|+..|+++++++|++..++..++...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988776666543
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=1e-13 Score=116.48 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005626 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (687)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (687)
.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCh
Q 005626 416 GSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 416 g~~~~A~~~~~~al~~~p~~~ 436 (687)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888764
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.52 E-value=3.4e-13 Score=133.38 Aligned_cols=160 Identities=12% Similarity=0.049 Sum_probs=135.8
Q ss_pred chhhhhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 005626 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNL 340 (687)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 340 (687)
...+...+++++|...+++++...+..+. .+..+|.++...+++++|+.++++++...+.. ..++.++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34455578999999999999998877655 33458999999999999999999999964432 3479999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 005626 341 GVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (687)
Q Consensus 341 a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (687)
|.+|...|++++|+.+|+++++.. +....++.++|.+|..+|++++|+.++++++++.+.. +.++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999999999531 2234589999999999999999999999999885433 789999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcC
Q 005626 408 LGVLYRDAG-SISLAIDAYEQCLKID 432 (687)
Q Consensus 408 la~~~~~~g-~~~~A~~~~~~al~~~ 432 (687)
+|.++..+| ++++|+++|++++.+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999 4799999999999864
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=7.8e-13 Score=118.23 Aligned_cols=135 Identities=14% Similarity=0.070 Sum_probs=124.5
Q ss_pred HHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005626 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (687)
Q Consensus 263 ~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (687)
...+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44567788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 005626 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~ 397 (687)
++...|++++|+.+++++++++|++..++..++.+ +...|++++|+..++++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999999999888555544 88899999999999987654
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.6e-13 Score=140.68 Aligned_cols=230 Identities=14% Similarity=0.117 Sum_probs=172.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (687)
+...++.|..+...|+|++|++.|.++++..|.........+......+..++ ++..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------al~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQET-----------------SILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHH-----------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHH-----------------HHHHHHHHHH
Confidence 34577889999999999999999999999888765544433333322222222 3467788888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVY 201 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 201 (687)
..|++++|.+.+.+++...+...... ....+...++.++...|++++|+..+++++... +....++..+|.++
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 88888888888888877665543332 223456667777788889999999998888652 23367889999999
Q ss_pred HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchh
Q 005626 202 SELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~ 275 (687)
...|++++|+..+++++.. .+....++..++.+|...|++++|...+++++...+.........+..+..+|.+
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999999875 2334678999999999999999999999999887554333334456677778888
Q ss_pred hhhcCCHHHHHHHHHHHHHh
Q 005626 276 VKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~ 295 (687)
+...+++.+|..++.+++..
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 88888888888888887754
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=2.7e-13 Score=115.12 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 270 (687)
+.++.++|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|+....+..++.++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999998877666667777777
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHHhCCC
Q 005626 271 DLGTKVKLEGDINQGVAYYKKALYYNWH 298 (687)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~p~ 298 (687)
.+|.++...+++++|+..|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7787777778888888888887777664
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-13 Score=114.62 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=107.6
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (687)
.+.....++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
.++...|++++|+..++++++.+|.+...+..++.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999887764443333
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.50 E-value=1.4e-12 Score=110.08 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005626 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (687)
Q Consensus 300 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 379 (687)
..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56677777778888888888888888887777777777788888888888888888888888777777777777888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005626 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (687)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (687)
..|++++|+..++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888777777777777777776554
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=1.8e-14 Score=151.59 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 005626 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 342 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 342 (687)
..+++++|+..++.++...|.....+..+|..+...|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005626 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (687)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (687)
++.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH-HHHHH
Q 005626 423 DA-YEQCL 429 (687)
Q Consensus 423 ~~-~~~al 429 (687)
.. |++.+
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 43 44433
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=6.7e-14 Score=129.60 Aligned_cols=166 Identities=15% Similarity=0.049 Sum_probs=114.5
Q ss_pred hHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHHHH
Q 005626 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA---------AECLA 157 (687)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~la 157 (687)
..+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.+... .....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344445556666666666665555555556667777777777777777777777777776665411 01123
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005626 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (687)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (687)
.++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 55888899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHHHHH-HHHHHHH
Q 005626 238 RGDLESAI-ACYERCL 252 (687)
Q Consensus 238 ~g~~~~A~-~~~~~al 252 (687)
.++..++. ..+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 88877776 4444443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=5e-13 Score=115.26 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
+.++..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 411 LYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
++..+|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555444
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=9.2e-13 Score=113.58 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=113.1
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (687)
Q Consensus 294 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 373 (687)
..++.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCC
Q 005626 374 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 417 (687)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~ 417 (687)
+|.++...|++++|+..|++++++.|+ +..+...+..+......
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 66777777776655443
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=2.7e-13 Score=116.44 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=100.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHhHHHHHHHhCChHHHHHHHHHHHhc---
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-------NVE-----AHIGKGICLQMQNMGRLAFDSFSEAVKL--- 111 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (687)
.+..++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 112 ----DPQNACAH----THCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (687)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (687)
+|++..+| +++|.++..+|++++|+..|++++++.|++.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 99999999999999999999999999998766533
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=3.5e-13 Score=113.21 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (687)
..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH
Q 005626 129 EGRLVEAAESYHKALSADPSYK 150 (687)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~ 150 (687)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999754
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.45 E-value=2.3e-12 Score=107.43 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 381 (687)
.+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
|++++|+..++++++.+|++..++..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 444444444444444444444444444433
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=5.6e-13 Score=118.82 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (687)
..+..+|..++..|++++|+..|++++.. +|....++.++|.++..+|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45566666666667777777777666665 333444555555555555555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 005626 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLY 412 (687)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 412 (687)
++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...++.+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555554 3344444443
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.44 E-value=8.9e-13 Score=117.52 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
...+..+|..++..|++++|+..|++++.+ +|....++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999999 66777899999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
+++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999999999998844
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.43 E-value=1.4e-12 Score=121.02 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=131.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHH
Q 005626 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 351 (687)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 351 (687)
..|++++|...++......+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999665555433366789999999999999999999999999984 3445778999999999999999
Q ss_pred HHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCH
Q 005626 352 KAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 418 (687)
Q Consensus 352 ~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 418 (687)
+|+.++++++++ .+++ ..++.++|.++...|++++|+.++++++...+ .+ ..++.++|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999998 4433 45789999999999999999999999997632 12 34578999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 005626 419 SLAIDAYEQCLKIDPD 434 (687)
Q Consensus 419 ~~A~~~~~~al~~~p~ 434 (687)
++|..++++++++...
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987543
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=2.9e-14 Score=150.58 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
..+..+|..+...|++++|++.|+++++.+|++..++.++|.++..+|++++|++.++++++++|+++.++.++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCChhh
Q 005626 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNA 438 (687)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~a 438 (687)
+|++++|++.|+++++++|++..++..++.+ +..+|++++|++.++ ++++++|+...+
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 9999999999999999999998899888888 888899999999999 888888876554
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=3.9e-12 Score=108.28 Aligned_cols=119 Identities=22% Similarity=0.251 Sum_probs=112.6
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
...+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 45566777777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
..|++++|+.+++++++..|++..++..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998875
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.43 E-value=8.6e-13 Score=108.97 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 005626 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 407 (687)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 407 (687)
+|++..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57777888888899989999999999999999998988889999999999999999999999999999998 8899999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q 005626 408 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 408 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 436 (687)
+|.++... |++++|++++++++...|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999888754
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=4.4e-12 Score=105.72 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
...|++++|...|+++++++|++..++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999998776553
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-12 Score=111.42 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 373 (687)
|.....+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++.+|++..++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444555555555555555555555555555555544 4455555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005626 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (687)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (687)
+|.++...|++++|+.+|+++++++|++..++..++.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555555555555555555555555444444443
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.42 E-value=1.3e-12 Score=121.23 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=109.5
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC
Q 005626 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNACAHTHCGILYKDEGR 131 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 131 (687)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999999666554433367889999999999999999999999999983 44557789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcC
Q 005626 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYSELM 205 (687)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g 205 (687)
+++|+..+++++.......+.....+.++..+|.++...|++++|+..+++++...+. + ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9999999999998732211111123455666777777777777777777776654211 1 122344555555555
Q ss_pred CHHHHHHHHHHHHH
Q 005626 206 QYDTALGCYEKAAL 219 (687)
Q Consensus 206 ~~~~A~~~~~~al~ 219 (687)
++++|+.+++++++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=2.2e-13 Score=143.41 Aligned_cols=183 Identities=16% Similarity=0.102 Sum_probs=145.1
Q ss_pred CHHHHHHHHHH----HHHhCCCCHHHHHhHHHHH------------HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 63 KFVDALALYEI----VLEKDSGNVEAHIGKGICL------------QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 63 ~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
.++.|+..+++ ++..+|.. ++...|... ..++++++|+..++++++..|+....+..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45566665555 55556643 333333221 2456777888888888888899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005626 127 KDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (687)
...|++++|+..|++++++.|.+. ........++.++|.++...|++++|+..|+++++++|+++.+++++|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999999988873 112223556888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (687)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (687)
.+|..+|++++|+..|+++++++|++..++..++.++...+++++|...
T Consensus 359 ~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877643
No 174
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.41 E-value=1.1e-10 Score=123.41 Aligned_cols=326 Identities=7% Similarity=-0.075 Sum_probs=182.3
Q ss_pred hCC-CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 005626 60 SRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAE 137 (687)
Q Consensus 60 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 137 (687)
..| +++.|..+|++++...|. |+++.+..+|++++...| +...|..........++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999988876 889999999999999888 77788888777776663 455677
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 138 SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (687)
Q Consensus 138 ~~~~al~~---~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (687)
.|+.++.. ++.+...|......+.... ...++.+.+...|++++.....+..-+...-..+........+...+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~---~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIE---DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCS---SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhch---hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88888875 5556555443332211100 12456888999999999864433333322222222222222232222
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhchhh--hhcCCHHHHHHHHHH
Q 005626 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKK 291 (687)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~l~~~~--~~~~~~~~A~~~~~~ 291 (687)
.... ..+..|...++.+....+. ....|..+... ..+.-. ...+..+.....|++
T Consensus 147 ~~~~--------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 147 GDTL--------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHH--------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHh--------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHH
Confidence 2211 2234444444444433222 11222221111 101000 000013456789999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH----------------------------
Q 005626 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---------------------------- 343 (687)
Q Consensus 292 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------------------- 343 (687)
++...|..+..|...+..+...|+.++|...|++++.. |.+...+...+..
T Consensus 205 al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999999 8886665544433
Q ss_pred ------------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 344 ------------YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 344 ------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
..+.++.+.|...|+++ +..+.....+...|.+....+ +.+.|...|+.+++..|+.+..+...+.
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11233444455555555 222223334444444433333 3555555555555555555544444444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 005626 411 LYRDAGSISLAIDAYEQC 428 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~a 428 (687)
.....|+.+.|...|+++
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 445555555555555554
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=2.7e-13 Score=136.58 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=88.7
Q ss_pred HHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (687)
Q Consensus 264 ~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 343 (687)
..+..+..+|..+...+++++|+..|++++...|.+. .+...++++++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 3456666777777777777777777777777666543 1223333444433321 1488999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 005626 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAI 422 (687)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 422 (687)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 44567788889
Q ss_pred HHHHHHHhcCCCChh
Q 005626 423 DAYEQCLKIDPDSRN 437 (687)
Q Consensus 423 ~~~~~al~~~p~~~~ 437 (687)
..|++++...|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998764
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.40 E-value=6.5e-12 Score=106.89 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 005626 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (687)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (687)
++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555555555555544 455555555555555555555555555555555 455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005626 411 LYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (687)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~a 438 (687)
++..+|++++|+..|+++++.+|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555555555555555555555555444
No 177
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.39 E-value=1.5e-11 Score=103.54 Aligned_cols=64 Identities=36% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (687)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 147 (687)
.++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 3333444444444444444444444444443333344444444444444444444443333333
No 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.39 E-value=9.4e-13 Score=112.75 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--
Q 005626 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-- 415 (687)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 415 (687)
+++++|++.++++++++|++++++.++|.++...++ +++|+..|+++++++|++.++++++|.+|..+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555554443 45777777777777777777777777777766
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCChhhhhhH
Q 005626 416 ---------GSISLAIDAYEQCLKIDPDSRNAGQNR 442 (687)
Q Consensus 416 ---------g~~~~A~~~~~~al~~~p~~~~a~~~~ 442 (687)
|++++|+++|++|++++|++...+..+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 489999999999999999987665543
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-11 Score=106.26 Aligned_cols=113 Identities=21% Similarity=0.143 Sum_probs=106.2
Q ss_pred ccCchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 005626 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (687)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (687)
.......++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34578899999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 156 (687)
.+|.++...|++++|+..|+++++.+|++...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 999999999999999999999999999998775443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.38 E-value=8.3e-13 Score=139.43 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=122.9
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (687)
+..+..+|..+...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCc
Q 005626 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 401 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 401 (687)
.+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ +++++.|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999998 888999999999999 777776654
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=1.3e-11 Score=105.05 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=100.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHC 122 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (687)
+.++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999988 799999999999999999999999999999999 8889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (687)
|.++...|++++|+..|+++++..|++.....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999999999999999877643
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.36 E-value=4.6e-12 Score=107.84 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 005626 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLN 372 (687)
Q Consensus 300 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 372 (687)
+..+..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666665544 55566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005626 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (687)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (687)
.+|.++...|++++|+.+|+++++..| +......++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 666666666666666666666666655 35555555555443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=5.6e-12 Score=128.23 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 302 AMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (687)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (687)
.+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 344555555555555555555555555 6677788899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (687)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (687)
+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++.+++...
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888777643
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.35 E-value=4.2e-12 Score=104.78 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 005626 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 373 (687)
Q Consensus 296 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 373 (687)
+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCc
Q 005626 374 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 401 (687)
Q Consensus 374 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 401 (687)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999998864
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.34 E-value=2.9e-12 Score=109.71 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-
Q 005626 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG- 382 (687)
Q Consensus 314 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 382 (687)
+.+++|++.++++++++|+++++|+++|.++...++ +++|+..|+++++++|++..+++++|.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555555544 457777788888888877777778887777764
Q ss_pred ----------CHHHHHHHHHHHHHhCCCcH
Q 005626 383 ----------KMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 383 ----------~~~~A~~~~~~al~~~p~~~ 402 (687)
++++|+++|++|++++|++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 78888888888888888864
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=3.7e-12 Score=128.25 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 379 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 379 (687)
.++.++|.++..+|++++|+..++++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcH
Q 005626 380 VQGKMDAAAEMIEKAIAANPTYA 402 (687)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~ 402 (687)
..+..+++...|.+++...|+++
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999988765
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.7e-11 Score=126.04 Aligned_cols=204 Identities=10% Similarity=0.055 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----------------AEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (687)
.....|..+...|++++|++.|.++++..+.. ..++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666655542 2357788999999999999999999888776
Q ss_pred CCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005626 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (687)
Q Consensus 256 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (687)
+...... ....+...++.++...|++++|+.++++++...+ ....++..+|.++...|++++|+..+++++..
T Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 5543322 2234556677777778889999988888876532 23567888899999999999999999888765
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005626 330 ------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 330 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (687)
.+...+++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...+++++|..+|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233367888889999999999999999988887632 22 34667778888888888998888888876
Q ss_pred h
Q 005626 397 A 397 (687)
Q Consensus 397 ~ 397 (687)
.
T Consensus 245 ~ 245 (434)
T 4b4t_Q 245 S 245 (434)
T ss_dssp H
T ss_pred H
Confidence 5
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.33 E-value=3.1e-12 Score=106.81 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005626 347 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (687)
+|++++|+.+|++++++ +|++..++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46777777777777777 466677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCChhhh
Q 005626 424 AYEQCLKIDPDSRNAG 439 (687)
Q Consensus 424 ~~~~al~~~p~~~~a~ 439 (687)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777776554
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.32 E-value=2.4e-12 Score=107.51 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005626 312 EMLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (687)
Q Consensus 312 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 388 (687)
..|++++|+..|+++++. +|++..++..+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357778888888888887 47777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCcHHHHH
Q 005626 389 EMIEKAIAANPTYAEAYN 406 (687)
Q Consensus 389 ~~~~~al~~~p~~~~~~~ 406 (687)
..++++++..|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888888776543
No 190
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.31 E-value=2.1e-11 Score=103.64 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAY 405 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 405 (687)
.+..+..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.++++++...|++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999998876 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 005626 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 441 (687)
+.+|.++...|++++|+.+|++++++.|+ +.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 117 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 99999999999999999999999999984 554443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=1.4e-11 Score=109.19 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------S 368 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 368 (687)
.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++++.+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456667777777777777777777777654321 2467778888888888888888888888764432 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
.++.++|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|..++++++++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888887632 22567888999999999999999999998877544
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=2.3e-11 Score=123.73 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005626 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY----------------YNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (687)
Q Consensus 259 ~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~ 322 (687)
.......+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334444566677888888889999999999999998 6777788999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (687)
Q Consensus 323 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (687)
++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++.+.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887654
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=1e-10 Score=103.52 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 005626 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (687)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (687)
.++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|++++|+..++++++..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45666677777777777777777777665443211 22345567777777788888888888888877764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (687)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (687)
..++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+..+++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999988876321 2567888899999999999999999998876543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=7.2e-10 Score=91.92 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (687)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (687)
|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred C
Q 005626 399 P 399 (687)
Q Consensus 399 p 399 (687)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.2e-11 Score=98.66 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (687)
...+..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777766 666777
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 005626 408 LGVLYRDAGSISLAIDAYE 426 (687)
Q Consensus 408 la~~~~~~g~~~~A~~~~~ 426 (687)
+|.++..+|++++|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777777766666555443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.08 E-value=9.9e-10 Score=86.49 Aligned_cols=84 Identities=42% Similarity=0.589 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005626 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (687)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (687)
+..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++.++|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566666666666677777777777777666666666677777777777777777777777777776666676666666
Q ss_pred HHcC
Q 005626 413 RDAG 416 (687)
Q Consensus 413 ~~~g 416 (687)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.08 E-value=7e-10 Score=91.97 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 351 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 005626 431 IDPDSRN 437 (687)
Q Consensus 431 ~~p~~~~ 437 (687)
++|+...
T Consensus 82 ~~~~~~~ 88 (115)
T 2kat_A 82 AAQSRGD 88 (115)
T ss_dssp HHHHHTC
T ss_pred hcccccc
Confidence 9886543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.2e-10 Score=95.92 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=87.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHT 120 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (687)
+++.+..+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 005626 121 HCGILYKDEGRLVEAAESYHK 141 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~ 141 (687)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999888877766554
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=2.5e-09 Score=84.10 Aligned_cols=84 Identities=42% Similarity=0.625 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378 (687)
Q Consensus 299 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 378 (687)
...++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++++|++..++.++|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcC
Q 005626 379 TVQG 382 (687)
Q Consensus 379 ~~~g 382 (687)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7754
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.99 E-value=2e-09 Score=112.61 Aligned_cols=126 Identities=9% Similarity=-0.038 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---H
Q 005626 305 NLGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---S 368 (687)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~ 368 (687)
..+..+..+|+|++|+..+++++++ .++ ....+.++|.+|..+|++++|+.++++++++ .|++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445567889999999999999876 233 3667889999999999999999999999976 3454 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
..+.+||.+|..+|++++|+.+|++++++ .|++ .+...+++.++..++.+++|...|+++.+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986 4454 56678899999999999999999999864
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.98 E-value=7.9e-10 Score=88.78 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005626 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (687)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (687)
+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777777777777777777777777777 77777777777777777777777777777777766643 5
Q ss_pred CHHHHHHHHHHHHhcCCCCh
Q 005626 417 SISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 417 ~~~~A~~~~~~al~~~p~~~ 436 (687)
.+.+++..|+++...+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56677777777777777654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.96 E-value=2e-08 Score=85.96 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 005626 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD- 414 (687)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 414 (687)
+|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+.++||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 444444444444444444444443 344444455555444 44555555555554443 334455555555554
Q ss_pred ---cCCHHHHHHHHHHHHhc
Q 005626 415 ---AGSISLAIDAYEQCLKI 431 (687)
Q Consensus 415 ---~g~~~~A~~~~~~al~~ 431 (687)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 45555555555555444
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.96 E-value=2e-09 Score=86.57 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 566677777777777777777777777777777777777777777777777777777777777777665543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.7e-08 Score=86.54 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=106.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAV 354 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 354 (687)
.+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46789999999999988754444 999999999999999999999987 689999999999999 89999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005626 355 ECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (687)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (687)
.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+..+|+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~~ 137 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILNN 137 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC--
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHhh
Confidence 999999987 789999999999999 999999999999999874 4555555543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.94 E-value=4.6e-09 Score=84.37 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (687)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (687)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5677777777777777777777777777777777777777777777777777777777777777777654
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.93 E-value=3.4e-08 Score=92.47 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=92.4
Q ss_pred hhCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 005626 328 HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 389 (687)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 389 (687)
+.+|++++.++-.|.+... .| ...+|...++++++++|+ +..++..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3467777777666665532 12 467899999999999999 577999999999995 99999999
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 005626 390 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 435 (687)
+|+++++++|+. ..+++.+|..+.. .|++++|..+++++++.+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999998874
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=1.6e-09 Score=86.94 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 005626 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVE-AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (687)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (687)
.+..|..++..|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887743
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 005626 130 GRLVEAAESYHKALSADPSY 149 (687)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~ 149 (687)
+.+.+++..|++++..+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 56777888888877776654
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.91 E-value=5.9e-09 Score=109.00 Aligned_cols=128 Identities=12% Similarity=-0.019 Sum_probs=107.9
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 005626 270 TDLGTKVKLEGDINQGVAYYKKALYY-----NWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (687)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~ 333 (687)
...+..+..+|++++|+..+++++++ .+++ ..++.++|.+|..+|+|++|+.++++++++ +|+.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 33444556789999999999999976 3444 467899999999999999999999999986 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
...++++|.+|..+|++++|+.+|++|+++ .|+++ +...+++.++..++.+++|...|+++.+.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999986 45654 46788999999999999999999988654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.85 E-value=8.3e-08 Score=94.09 Aligned_cols=144 Identities=19% Similarity=0.131 Sum_probs=111.9
Q ss_pred HHHhCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------HHHHH-HHHH
Q 005626 292 ALYYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-------LDKAV-ECYQ 358 (687)
Q Consensus 292 al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~~ 358 (687)
+....|.+..+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.++..... ..+++ ..++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 444456665543 445555555443 5899999999999999999999988887753211 11111 1222
Q ss_pred --HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 359 --~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
.++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 233567999999999999999999999999999999999975 77889999999999999999999999999999875
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.82 E-value=7.8e-08 Score=90.09 Aligned_cols=186 Identities=10% Similarity=0.019 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC---------------------ChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------------------MGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
..-.+.+++.++..+|++...+...|..|..-. ++..|...|.++... -..
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~r 119 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALS 119 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHH
Confidence 455678889999999999876665555543221 234555555555431 111
Q ss_pred HHHHHHcCCHHHHHH-----HHHH-HHhcCCCCHHHHHHHHHHHHHhHHH----HHHcCChHHHHHHHHHHHhhCCC--C
Q 005626 123 GILYKDEGRLVEAAE-----SYHK-ALSADPSYKPAAECLAIVLTDLGTS----LKLAGNTQDGIQKYYEALKIDPH--Y 190 (687)
Q Consensus 123 a~~~~~~g~~~~A~~-----~~~~-al~~~~~~~~~~~~la~~~~~lg~~----~~~~g~~~~A~~~~~~al~~~p~--~ 190 (687)
+.+ .....+.+++. -+.. +-+.+|++.+.....+.++...+.. ....+...+|...++++++++|+ +
T Consensus 120 aL~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 120 SLE-TAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp HHH-HHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred HHH-HhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 111 11222322222 2223 3345677777765555544332211 11223467899999999999999 6
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Q 005626 191 APAYYNLGVVYSEL-----MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNF 258 (687)
Q Consensus 191 ~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 258 (687)
..+|..+|.+|... |+.++|.++|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 77999999999995 99999999999999999975 9999999999988 499999999999999988763
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.75 E-value=1.5e-06 Score=85.18 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=110.4
Q ss_pred HHHHhCCCCHHHH--HhHHHHHHHhCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 73 IVLEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (687)
Q Consensus 73 ~~l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 147 (687)
++....|.+..+| +..|..++..++ ..+|+.+|+++++++|+++.++..++.++.. .. ...+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-----------~~--~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-----------RH--SQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HH--HHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------Hh--ccCC
Confidence 3445566665543 445566655543 4678888888888888888887777777761 00 1111
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005626 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (687)
Q Consensus 148 ~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 227 (687)
..... .. ....+... ..++..+|.++.++..++..+...|++++|+..+++++.++|+ ...
T Consensus 252 ~~~~~-------~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a 312 (372)
T 3ly7_A 252 LDEKQ-------LA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312 (372)
T ss_dssp CCHHH-------HH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHH
T ss_pred Cchhh-------HH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHH
Confidence 11110 00 01222221 1334667999999999999999999999999999999999975 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005626 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (687)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (687)
+..+|.++...|++++|++.|++++.++|...
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 89999999999999999999999999999865
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=1.7e-07 Score=73.35 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 364 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
+|++++.+..+|.+++..++ .++|...++++++++|+++.+++.+|..+...|++++|+.+|+++++.+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788888888888876655 6888888888888888888888888998888999999999999988888884
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=1.7e-07 Score=79.16 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 005626 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 423 (687)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 423 (687)
....+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++..++..++.+ | +..+++++||..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456777888888888889999999999999988 6779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhh
Q 005626 424 AYEQCLKIDPDSRNAGQN 441 (687)
Q Consensus 424 ~~~~al~~~p~~~~a~~~ 441 (687)
+++++++++|++..+..-
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999999877543
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.59 E-value=4.3e-07 Score=71.02 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=62.9
Q ss_pred CCCCHHHHHhHHHHHHHhCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 78 DSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (687)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 149 (687)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888899999999876665 6899999999999999999999999999999999999999999999888873
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=8.4e-07 Score=74.91 Aligned_cols=92 Identities=8% Similarity=-0.053 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMI 391 (687)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (687)
..+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++..++..++.+ | +..++++++|..++++|+|++|.+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34455555555556666666666666666666 4556777777777666 5 44667777777777777777777777
Q ss_pred HHHHHhCCCcHHHHHHH
Q 005626 392 EKAIAANPTYAEAYNNL 408 (687)
Q Consensus 392 ~~al~~~p~~~~~~~~l 408 (687)
+++++++|++..+....
T Consensus 95 ~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 77777777766655443
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.45 E-value=1.7e-06 Score=69.59 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=66.6
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-------SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (687)
.+++..+.+|..++..|+|..|+.+|+++++.. +....++..+|.+++++|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 567888999999999999999999999998853 2456788889999999999999999999999999998888
Q ss_pred HHHHH
Q 005626 119 HTHCG 123 (687)
Q Consensus 119 ~~~la 123 (687)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 77665
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.44 E-value=5.8e-07 Score=92.33 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=74.1
Q ss_pred HcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHH
Q 005626 346 DRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLG 409 (687)
Q Consensus 346 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la 409 (687)
..|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++++ +|+.+..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888899988888875 45554 47888999999999999999999999876 344456788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc-----CCCChhh
Q 005626 410 VLYRDAGSISLAIDAYEQCLKI-----DPDSRNA 438 (687)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a 438 (687)
.+|..+|++++|+.+|++|+++ -|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999885 4555543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.44 E-value=1.2e-06 Score=89.91 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHH
Q 005626 311 GEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNNL 374 (687)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l 374 (687)
...|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|++ ...+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567888888888888875 3444 567788999999999999999999999876 3444 4478899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH
Q 005626 375 GVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 405 (687)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 405 (687)
|.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999876 46665443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.43 E-value=6.7e-07 Score=92.12 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=51.6
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHH
Q 005626 310 YGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNN 373 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~ 373 (687)
+...|++++|+..+++++++ .|++ ...+.++|.+|..+|++++|+.++++++++ .|++ ...+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34556666666666666654 2222 445566666666666666666666666654 2333 335566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 374 LGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
||.+|..+|++++|+.+|++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666666654
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.43 E-value=2.3e-06 Score=68.78 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 005626 335 EACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (687)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (687)
.-.+.+|..++..|+|..|+.+|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344455555555555555555555555431 1223444444555555555555555555555555544444444
Q ss_pred HH
Q 005626 408 LG 409 (687)
Q Consensus 408 la 409 (687)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.32 E-value=3.3e-06 Score=86.90 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=87.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHHHhCChHHHHHHHHHHHhc-----CCC
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQ 114 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 114 (687)
.+..+.....+..+|+|++|+..++++++. .|++ ...+..+|.+|..+|+|++|+.++++++.+ .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 455666777788999999999999999975 3444 468899999999999999999999999975 334
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH
Q 005626 115 ---NACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPA 152 (687)
Q Consensus 115 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 152 (687)
-...++++|.+|..+|++++|+..|++++++ .|+++..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 4567899999999999999999999999875 5666654
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.21 E-value=0.00024 Score=74.74 Aligned_cols=163 Identities=9% Similarity=0.004 Sum_probs=133.7
Q ss_pred chhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 005626 273 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLG 341 (687)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~la 341 (687)
-..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+. .++|.++|++..... ..+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355677899999999999998764 3356677777777765543 688999999988763 34688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Q 005626 342 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSIS 419 (687)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 419 (687)
..+.+.|+.++|.+.+++..+.. .-+...+..+-..|.+.|+.++|.+.|++..+.. .-+...+..+-..+.+.|+.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999988753 3357889999999999999999999999998763 224778999999999999999
Q ss_pred HHHHHHHHHHhc--CCCC
Q 005626 420 LAIDAYEQCLKI--DPDS 435 (687)
Q Consensus 420 ~A~~~~~~al~~--~p~~ 435 (687)
+|.+.+++..+. .|+.
T Consensus 193 ~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHHHhCCCcCH
Confidence 999999998664 4543
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.08 E-value=0.00046 Score=72.63 Aligned_cols=93 Identities=5% Similarity=-0.078 Sum_probs=45.8
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNR 238 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 238 (687)
..+...+.+.|++++|.+.|+++.+.. .-+...|..+-..|.+.|+.++|.+++++..+.. .-+...|..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 333344444455555555554444331 1134445555555555555555555555554432 11344555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 005626 239 GDLESAIACYERCLA 253 (687)
Q Consensus 239 g~~~~A~~~~~~al~ 253 (687)
|+.++|.+++++..+
T Consensus 189 g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 189 KNADKVYKTLQRLRD 203 (501)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.05 E-value=2.7e-05 Score=63.15 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 005626 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 424 (687)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 424 (687)
...+.+.|.+.+..++...++.+++|+++....+..+ ++..++..+... | ..-+.++.||..+.++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555555555556666677777777766665554 666666666655 3 3456677777777777777777777
Q ss_pred HHHHHhcCCCChhhh
Q 005626 425 YEQCLKIDPDSRNAG 439 (687)
Q Consensus 425 ~~~al~~~p~~~~a~ 439 (687)
++..|++.|++..+.
T Consensus 97 ~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHHhCCCCHHHH
Confidence 777777777776554
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.96 E-value=0.00012 Score=59.41 Aligned_cols=91 Identities=8% Similarity=-0.068 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
.+.+.|.+....++.+..+.+++|+++.+..+... ++..++..++.. | ..-+.++.+|..+++.|+|++|..+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444444555555555555555554444 555555555544 2 234456666666666666666666666
Q ss_pred HHHHhCCCcHHHHHHH
Q 005626 393 KAIAANPTYAEAYNNL 408 (687)
Q Consensus 393 ~al~~~p~~~~~~~~l 408 (687)
.+++..|++.++....
T Consensus 99 ~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHH
Confidence 6666666665554433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.77 E-value=0.00061 Score=56.30 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (687)
.|...|.. ...++.++|.+.|+.++.++...+.+|...|....++|+...|.+.+.+++.+.|....
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 33344433 33455666666666665555555556666666666666666666666666666665443
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.70 E-value=0.00069 Score=56.00 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=95.0
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 294 YYNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPHC--------AEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 294 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
-..|++++.|..........|+. ++-++.|++++..-|.. ...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999999999 89999999999876642 4566667755 566999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005626 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (687)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (687)
++++....+.+|...|..-.++|+...|.+.+.+++.+.|...+.+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999888899999999999999999999999999999999865544
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.66 E-value=0.00036 Score=59.18 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---------HHHHHhHHHHHHHhCChHHHHHHHHHHHhcC------C-
Q 005626 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------P- 113 (687)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p- 113 (687)
.+++..+.++..|.|+.|+-+...++....++ .+++..+|..++..++|..|...|+++++.. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999977653322 2488999999999999999999999997641 1
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 114 ------------------QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (687)
Q Consensus 114 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (687)
.+.+..+.++.|+...+++++|+..++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998765
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.57 E-value=0.00044 Score=58.65 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 303 MYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (687)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (687)
++.-...+...|.|+.|+-....++... |+. .+++..+|.+++..++|..|...|+++++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444555666777777777776655542 221 346677777777777777777777777654
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.37 E-value=0.0038 Score=51.34 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 005626 365 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (687)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 440 (687)
....++.+++|+++....+. .+++..++..+...|. .-+.++.||..+.++|+|++|..+.+..|++.|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999887754 5788899999988884 5788999999999999999999999999999999877643
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.31 E-value=0.22 Score=53.18 Aligned_cols=334 Identities=10% Similarity=-0.038 Sum_probs=146.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL-- 125 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-- 125 (687)
.+..+..|...++.|++..+..+...+ ...|- ..+..........++. .-..+...++.+|+.+..-......
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 456677888888888887777664442 23332 2222222222222211 1224455566677776554443333
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 126 -YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 126 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (687)
+.+.+++..-+..+.. .|.+... -..........|+..+|.....++-......+.....+-..+...
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~-------~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHH-------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHC
Confidence 2234555554443332 2444443 222233345556666666655555544444344444343333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHH
Q 005626 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (687)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 284 (687)
|... ...+..........|+...|......+ |.... .++..+..+- .+...
T Consensus 150 g~lt----------------~~~~~~R~~~al~~~~~~~a~~l~~~l----~~~~~---~~a~~~~al~------~~p~~ 200 (618)
T 1qsa_A 150 GKQD----------------PLAYLERIRLAMKAGNTGLVTVLAGQM----PADYQ---TIASAIISLA------NNPNT 200 (618)
T ss_dssp TCSC----------------HHHHHHHHHHHHHTTCHHHHHHHHHTC----CGGGH---HHHHHHHHHH------HCGGG
T ss_pred CCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHhC----CHHHH---HHHHHHHHHH------hChHh
Confidence 3322 222333344445555555544432221 11110 0111111100 01111
Q ss_pred HHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 285 GVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 285 A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
....... ..+... .....++.......+.+.|...+.+......-+.. ....++.-+...+...++...+.+
T Consensus 201 ~~~~~~~---~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~ 277 (618)
T 1qsa_A 201 VLTFART---TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD 277 (618)
T ss_dssp HHHHHHH---SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred HHHHHhc---cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHh
Confidence 1111000 011111 11222233333334556666666555433222221 112222222233324455555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
......+ ......++......|+++.|..++++.-..........+.+|..+..+|+.++|..+|+++.+
T Consensus 278 ~~~~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 278 AIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4433322 222223333334557777777766654433333456667777777777777777777776654
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.26 E-value=0.23 Score=53.09 Aligned_cols=319 Identities=8% Similarity=-0.114 Sum_probs=176.0
Q ss_pred HHHHHHHhCCCCHHHHHhHHHHH---HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 70 LYEIVLEKDSGNVEAHIGKGICL---QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (687)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (687)
-+...++..|+.+..-......+ .+.+++..-+.++.. .|.+..............|+..+|....+++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 44445677888876544444433 345677666654443 37888888888888899999888888777776554
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005626 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (687)
Q Consensus 147 ~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (687)
...+.. .-.+|....+...-..+.+.......+..|+...|......+ .++...
T Consensus 133 ~~~p~~-----------------------c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l---~~~~~~ 186 (618)
T 1qsa_A 133 KSQPNA-----------------------CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADYQT 186 (618)
T ss_dssp SCCCTH-----------------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGGHH
T ss_pred CCCcHH-----------------------HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC---CHHHHH
Confidence 443332 122233333223334445555667777788877776554432 122111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHH----H
Q 005626 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----A 302 (687)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~ 302 (687)
....+..++. +......... ...+... ........+.. ....+.+.|...+........-+.. .
T Consensus 187 ~a~~~~al~~---~p~~~~~~~~---~~~~~~~-~~~~~~~~~~r-----lar~d~~~A~~~~~~~~~~~~~~~~~~~~~ 254 (618)
T 1qsa_A 187 IASAIISLAN---NPNTVLTFAR---TTGATDF-TRQMAAVAFAS-----VARQDAENARLMIPSLAQAQQLNEDQIQEL 254 (618)
T ss_dssp HHHHHHHHHH---CGGGHHHHHH---HSCCCHH-HHHHHHHHHHH-----HHHHCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHh---ChHhHHHHHh---ccCCChh-hHHHHHHHHHH-----HHhcCHHHHHHHHHhhhhccCCCHHHHHHH
Confidence 1111111111 1111111111 1122111 11111111222 2244778888888777654433332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005626 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (687)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (687)
...++.-....+...++...+.+......++. ..--++...+..|+++.|..++++.-..........+.+|.++...|
T Consensus 255 ~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g 333 (618)
T 1qsa_A 255 RDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG 333 (618)
T ss_dssp HHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC
Confidence 22333334444535677777777655443333 33333334556799999999887765544456778888999999999
Q ss_pred CHHHHHHHHHHHHHhC-----------------------CC-c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 383 KMDAAAEMIEKAIAAN-----------------------PT-Y----AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (687)
Q Consensus 383 ~~~~A~~~~~~al~~~-----------------------p~-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (687)
+.++|..+|+++.... +. . .......+..+...|....|...+...+..
T Consensus 334 ~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 334 REAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 9999999888876420 00 0 012244566677888888888877777653
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.24 E-value=0.0028 Score=51.42 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 005626 367 FSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (687)
Q Consensus 367 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 440 (687)
.+.+.+++|+++.+..+. .+++..++..++..|. .-+.++.||..+.++|+|++|..+.+.+|++.|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 467888888888876654 4688888888887774 4678888888888888888888888888888888877643
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.19 Score=54.60 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (687)
+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4444444555555555555555555555555555555555555555555555444443
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.17 E-value=0.014 Score=48.08 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 005626 332 HCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (687)
Q Consensus 332 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (687)
....+.+++|+++.+..+. .+++..++..++..|. .-+.++.+|..++++|+|++|..+.+..++..|++.++...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3466666666666666543 3566677776666663 35567777777777777777777777777777777655544
Q ss_pred HH
Q 005626 408 LG 409 (687)
Q Consensus 408 la 409 (687)
..
T Consensus 117 k~ 118 (144)
T 1y8m_A 117 KS 118 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.14 E-value=0.0045 Score=50.24 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=48.1
Q ss_pred CHHHHHhHHHHHHHhCCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005626 81 NVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (687)
Q Consensus 81 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (687)
++.+.+.+|.++.+..+. .+++..++..++.+|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 456666666666665543 3566666666666663 35566667777777777777777777777777776665443
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.96 E-value=0.16 Score=57.16 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=53.5
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005626 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (687)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (687)
......+...|..++|++..+ ++... .......|++++|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 334455566788887776542 22222 3345678999999887543 3567889999999999999
Q ss_pred HHHHHHHHHHH
Q 005626 241 LESAIACYERC 251 (687)
Q Consensus 241 ~~~A~~~~~~a 251 (687)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.75 E-value=0.13 Score=57.95 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=28.3
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (687)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (687)
..|++++|.+..+ ..++...|..+|..+.+.++++.|+++|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4466666666542 2345666777777777777777777777664
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.18 Score=51.85 Aligned_cols=205 Identities=14% Similarity=-0.036 Sum_probs=126.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEK------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (687)
..+..+..+..+ ..|++++|++.+....+. .+....+...+...+...++++...+.+.-..+.......+-.
T Consensus 16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~ 94 (445)
T 4b4t_P 16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ 94 (445)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455556666665 347899999887655442 1234567888889999999999988877665554443333222
Q ss_pred HHHHH---HH-HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--C-
Q 005626 121 HCGIL---YK-DEGRLVEAAESYHKALSA----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H- 189 (687)
Q Consensus 121 ~la~~---~~-~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~- 189 (687)
.+... +. .....+. ......+.. ..+-...-...+.+...++.++...|++.+|...+.......- .
T Consensus 95 ~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~ 172 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME 172 (445)
T ss_dssp HHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence 22211 11 1222221 111222221 1111111122466678899999999999999999988764311 1
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005626 190 ---YAPAYYNLGVVYSELMQYDTALGCYEKAAL---ERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (687)
Q Consensus 190 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (687)
-.+.+.....++...+++.+|...++++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256788889999999999999999998743 23333 345677899999999999999999998764
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.63 E-value=0.4 Score=47.83 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 268 (687)
..+|.+|+..|+|.+|.+.+.+..+.-.. -.+++..-..+|...+++.++...+.++......-.......+.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999998774221 245677778889999999999999999875531100011223455
Q ss_pred HHHhchhhh-hcCCHHHHHHHHHHHHH
Q 005626 269 LTDLGTKVK-LEGDINQGVAYYKKALY 294 (687)
Q Consensus 269 ~~~l~~~~~-~~~~~~~A~~~~~~al~ 294 (687)
...-|..+. ..++|.+|...|-++..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 555666666 67788888777777654
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.51 E-value=1.4 Score=48.84 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---Cc-HHHHHHH
Q 005626 195 YNLGVVYSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NF-EIAKNNM 265 (687)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~-~~~~~~l 265 (687)
..+|.+ ..|+.++++..+.+.+... .++ .-+.+.+|.++...+ .+++..+...+.... .. .......
T Consensus 380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence 344443 4577778888877766422 122 345666666666555 468888888776432 11 0112222
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005626 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (687)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 343 (687)
+ +-..+|.++...++ +++.+.+...+..+.... .+-+.+|.++.-.|+-+....++..+.+...+...-...+|..
T Consensus 456 g-AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 456 G-ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp H-HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 3 33366666665554 456666666665433211 3455677777788877666666666555333222222334444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 344 YKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
+...|+.+.+....+..... .++. +...+|..|...|+...-.+.+..+.
T Consensus 534 ll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 534 LINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 44566666655555544432 2222 23345555666666544333444443
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.41 E-value=0.14 Score=51.19 Aligned_cols=95 Identities=14% Similarity=-0.016 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCH----H
Q 005626 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC----AEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNFS----Q 369 (687)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~----~ 369 (687)
-..+|.+|...|+|.+|.+.+.+..+.-. ++ .+++.....+|...+++.++...+.++.... +.++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 34788999999999999888888876421 11 4567777888888999999999998887653 1222 3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 005626 370 SLNNLGVVYT-VQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 370 ~~~~la~~~~-~~g~~~~A~~~~~~al~~ 397 (687)
....-|..+. ..++|.+|...|-++++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 4556677778 789999998888888754
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.044 Score=59.55 Aligned_cols=112 Identities=12% Similarity=0.005 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH--Hh-cCCHHHHHHHHHHHHhh--------CCCC----------HHHHHHH
Q 005626 282 INQGVAYYKKALYYNWHYADAMYNLGVAY--GE-MLKFDMAIVFYELAFHF--------NPHC----------AEACNNL 340 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~-~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l 340 (687)
++.|+.++++....+|.....+ ..+.+. .. ..+--+|+..+.+.++. .+.+ ...+..-
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 5778888888888888654322 222221 11 22344677777666532 2222 2244455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005626 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (687)
Q Consensus 341 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (687)
+..+...|+++-|+++.++|+...|.....|..|+.+|..+|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 666677777777888888887777777777888888888888877777665543
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.5 Score=40.80 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=69.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
+.+..+.+| +..|+++.|.++.+++ ++...|..+|...+..|+++-|..+|+++- + +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHH
Confidence 455555554 6789999999988765 567889999999999999999999998752 2 22344456
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (687)
...|+.+.-.+.-+.+.... + +.....++...|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g-~-----------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE-D-----------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT-C-----------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc-c-----------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777655444444433322 1 22223344455777777766644
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.66 E-value=0.23 Score=45.97 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=31.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 005626 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115 (687)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (687)
.+++.|+.++|++..+..++.+|.++.....+...+.-.|++++|.+.++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34455555555555555555555555555555555555555555555555555555543
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.42 Score=41.26 Aligned_cols=99 Identities=9% Similarity=-0.051 Sum_probs=58.3
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005626 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (687)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~ 172 (687)
...|+++.|.+..++. ++...|..+|......|+++-|+.+|.++-. +..+..+|...|+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------HHHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------HHHHHHHHHHhCC
Confidence 4578888888877654 5677888888888888888888888877522 2223333444455
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (687)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (687)
.+.-...-+.+..... +.....+++.+|+++++++.|.+
T Consensus 76 ~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444433333322211 12223445566666666666544
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.56 E-value=0.22 Score=46.11 Aligned_cols=60 Identities=18% Similarity=0.078 Sum_probs=51.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005626 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (687)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (687)
.+.+.|+.++|++.....++.+|.+......+..+++-.|+++.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 345678888899999888999999998888888999999999999999988888888754
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=1.3 Score=45.31 Aligned_cols=191 Identities=13% Similarity=0.006 Sum_probs=112.9
Q ss_pred hCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 005626 95 QNMGRLAFDSFSEAVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (687)
Q Consensus 95 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~ 168 (687)
.|++++|++.+...-+. .+....+...+..++...++++...+.+.-..+.......+...+... .-....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~---~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQK---VMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHH---HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHh
Confidence 36788888877554432 233466788888999999999998887766655544444332221111 111111
Q ss_pred HcCChHHHHHHHHHHHhh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHH
Q 005626 169 LAGNTQDGIQKYYEALKI----DPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERP--M----YAEAYCNM 231 (687)
Q Consensus 169 ~~g~~~~A~~~~~~al~~----~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~l 231 (687)
.....+.. .....+.. ..+ .......|+.++...|++.+|...+.......- . -.+.+...
T Consensus 106 ~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22222211 11222221 111 245567899999999999999999998864321 1 15677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 005626 232 GVIYKNRGDLESAIACYERCLA---VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (687)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al 293 (687)
..++...+++.+|...++++.. ..+..+. ..+..+...|.++...++|.+|-.+|..+.
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~---lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYES---LKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8999999999999999998742 1222221 223334444555555555555555555444
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.45 E-value=1 Score=37.99 Aligned_cols=189 Identities=17% Similarity=0.136 Sum_probs=123.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005626 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (687)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (687)
.....++-.+|+.++-+-.-. .|..++....++..++-.|+|..++-.+.+ -+...+.+..+.||...+++.
T Consensus 8 kI~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 8 KICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence 344456678888877554333 344557778889999999999999877643 356677888899999999999
Q ss_pred HHHHHHHHHHh--cC---------------CCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005626 134 EAAESYHKALS--AD---------------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (687)
Q Consensus 134 ~A~~~~~~al~--~~---------------~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (687)
.|+..+++.++ .+ |.+.+. .+..+|.++.+.|+.++|+.++.......|-.+.+-..
T Consensus 80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF------FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcccccccceeeeccchHHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 99999999983 22 223222 36678889999999999999999998887654332211
Q ss_pred HHH-----------HHHHcCC-------HHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 005626 197 LGV-----------VYSELMQ-------YDTAL--------GCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYE 249 (687)
Q Consensus 197 la~-----------~~~~~g~-------~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~ 249 (687)
+-. +. ..|+ +.... +..++-.+.-|.... .....+.-+..+|-.++...+|.
T Consensus 154 iyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~ 232 (242)
T 3kae_A 154 LLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFE 232 (242)
T ss_dssp HHTTCCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhcCCCcccchHHHH-hhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence 100 00 0010 11111 122222223344322 33456777889999999999999
Q ss_pred HHHhcCCC
Q 005626 250 RCLAVSPN 257 (687)
Q Consensus 250 ~al~~~~~ 257 (687)
...+.+|.
T Consensus 233 ~lR~kDP~ 240 (242)
T 3kae_A 233 LVRRKDPM 240 (242)
T ss_dssp HHHHHSTT
T ss_pred HHHhcCCC
Confidence 99888885
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.34 E-value=0.23 Score=50.04 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHhHHHHHHHhCChHHHHHHHH
Q 005626 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (687)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (687)
+.+...|......|+.++|...+.+++...... ..+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445556666777899999999999999864321 1233456677788899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (687)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (687)
+++..+|-+..++..+..++...|+..+|+..|+++-+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999988999999999999999999998887644
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.77 E-value=0.38 Score=48.43 Aligned_cols=112 Identities=14% Similarity=0.046 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005626 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (687)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (687)
.|......|+.+.|...+.+++.+.....-. ... ...+-.+ ...+++. ...+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCH
Confidence 3344445677888888888888774322100 000 0011111 1111111 113455677888899999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
.+|+..+++++..+|-+..++..+..++...|+..+|++.|+++.+
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988644
No 252
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.68 E-value=1.7 Score=36.61 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=84.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005626 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (687)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (687)
+-.+++.++-.-.-.....|+ . -..++..++-.|.+..++-.+. .-+...+.+..+.||...++|
T Consensus 14 kY~dYdt~~fLsa~L~~~~~e---Y-------~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdY 78 (242)
T 3kae_A 14 RYRDYETAIFLAACLLPCKPE---Y-------RMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDY 78 (242)
T ss_dssp HTTCHHHHHHHHHHHC----C---T-------HHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCH
T ss_pred hcccccHHHHHHHHHccCChH---H-------HhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHH
Confidence 445666665433333333332 2 3345666777899999887764 345678888899999999999
Q ss_pred HHHHHHHHHHHHh-----------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 005626 208 DTALGCYEKAALE-----------------RPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (687)
Q Consensus 208 ~~A~~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 260 (687)
..|+..+++.++- +|.+.+ .+..+|.++.+.|+.++|+.++.......+-...
T Consensus 79 kkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 79 KKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999999999842 233433 4667899999999999999999999998886553
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.45 Score=48.75 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=62.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHhHHHHHHHhCChHHHH----------HHHHHHHhc--
Q 005626 55 ANILRSRNKFVDALALYEIVLE-----------KDSGNVEAHIGKGICLQMQNMGRLAF----------DSFSEAVKL-- 111 (687)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-- 111 (687)
-..++.+++|++|.++-..++. .++-.+.+|+..+.++...|+..... ..+-.+++.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3456778999999988776651 13345677888888888888765532 233333332
Q ss_pred ---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005626 112 ---DPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (687)
Q Consensus 112 ---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (687)
++. ....+..+-+.|...+.+++|..+..++. .|.........+..++.+|.++..+++|.+|.+++..++...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 222 24567778889999999999999999884 554432334456778889999999999999999999999887
Q ss_pred CCC
Q 005626 188 PHY 190 (687)
Q Consensus 188 p~~ 190 (687)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 654
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.08 E-value=0.25 Score=51.10 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005626 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (687)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (687)
..+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35666777777777777777777777777777777777777777777777777777777777666667777777666543
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.80 E-value=10 Score=42.19 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=84.7
Q ss_pred HHHhCChHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHh
Q 005626 92 LQMQNMGRLAFDSFSEAVKLD-PQN----ACAHTHCGILYKDEGRLVEAAESYHKALSADP---SYKPAAECLAIVLTDL 163 (687)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~l 163 (687)
....|+.++++..+.+.+... .++ ..+++.+|.++...+ +++...+...+.... ...........+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345677778888887766522 222 335666666665554 467887777775432 1111111122234466
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005626 164 GTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (687)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (687)
|.++...++ +++.+.+...+..+... ..+-+.+|.++...|+-+.....+..+.+...+...-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 666665554 45666666666543321 134456677777777766666666555543333222233344444566776
Q ss_pred HHHHHHHHHHH
Q 005626 242 ESAIACYERCL 252 (687)
Q Consensus 242 ~~A~~~~~~al 252 (687)
+.+....+...
T Consensus 541 e~~~~li~~L~ 551 (963)
T 4ady_A 541 ELADDLITKML 551 (963)
T ss_dssp GGGHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555443
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.11 Score=53.34 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=59.7
Q ss_pred HHhcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhc-----
Q 005626 310 YGEMLKFDMAIVFYELAFH-----------FNPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALSI----- 363 (687)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 363 (687)
+...+++++|.++-...+. ++.-.+.+|+..+.++...|+..... ..+-.+++.
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4455666666666554431 13334667777777777777665432 122222222
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005626 364 KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 364 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
++. ....+..+-+.|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 222 24467778888999999999999999884 4432 4456788999999999999999999999998876
Q ss_pred hhh
Q 005626 436 RNA 438 (687)
Q Consensus 436 ~~a 438 (687)
..+
T Consensus 304 ~~a 306 (523)
T 4b4t_S 304 SKS 306 (523)
T ss_dssp SSC
T ss_pred hhh
Confidence 544
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.58 E-value=0.43 Score=49.32 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 005626 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (687)
Q Consensus 261 ~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 340 (687)
.......++..+|++......+..|..+|.+|....|++...+..+|.+....|+.-+|+-+|-+++......+.+..++
T Consensus 147 ~~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 147 CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 34445667888999999999999999999999999999999999999999999999999999999998877788888888
Q ss_pred HHHHHH
Q 005626 341 GVIYKD 346 (687)
Q Consensus 341 a~~~~~ 346 (687)
...+.+
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.19 E-value=1.1 Score=50.11 Aligned_cols=96 Identities=6% Similarity=-0.084 Sum_probs=54.8
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Q 005626 268 ALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGV 342 (687)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 342 (687)
.|..+-..+.+.|+.++|..++.+..+. ..-+...|..+...+.+.|+.++|.++|+++.+.. ..+...|+.+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4455555566666666666666554321 22345566666666666666666666666665542 224555566666
Q ss_pred HHHHcCC-HHHHHHHHHHHHhc
Q 005626 343 IYKDRDN-LDKAVECYQMALSI 363 (687)
Q Consensus 343 ~~~~~g~-~~~A~~~~~~al~~ 363 (687)
++.+.|+ .++|.+++++..+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 6666665 35566666666554
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.19 E-value=3.9 Score=47.60 Aligned_cols=147 Identities=12% Similarity=-0.036 Sum_probs=91.4
Q ss_pred HHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005626 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (687)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~l 163 (687)
....+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..-.......
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------
T ss_pred hHHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------
Confidence 34456666777888876654 3455677888889999999999999999999998743221110000
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHc
Q 005626 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YA----EAYCNMGVIYKNR 238 (687)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~ 238 (687)
..... ..............+..|..+..++.+.+.++.+++..+.|++..+. +. ..|.++-..+...
T Consensus 880 -------~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 -------AVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp -------SSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 00000111112223455666777777888888888888888876543 22 2566667777888
Q ss_pred CCHHHHHHHHHHHH
Q 005626 239 GDLESAIACYERCL 252 (687)
Q Consensus 239 g~~~~A~~~~~~al 252 (687)
|+|++|...+...-
T Consensus 952 ~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 952 GKFDAAHVALMVLS 965 (1139)
T ss_dssp CCSGGGGHHHHHHH
T ss_pred CCHHHHHHHHHhCC
Confidence 88888877775543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.44 Score=48.67 Aligned_cols=102 Identities=12% Similarity=-0.090 Sum_probs=55.7
Q ss_pred HHHHhHHHHHHHhCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (687)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 159 (687)
.++..+|..+...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++........+ +.....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHHH
Confidence 4566677777777777777777776665422 22455666666666667777777666666443221111 1112233
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHh
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (687)
....|..+...++|.+|...|..++.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 33344444555555555555555443
No 261
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.12 E-value=1.2 Score=49.85 Aligned_cols=129 Identities=8% Similarity=-0.061 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 005626 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNL 374 (687)
Q Consensus 300 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 374 (687)
...+..+-..+.+.|+.++|..++.+..+. ..-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 347888999999999999999999876543 34468899999999999999999999999998753 3357788888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005626 375 GVVYTVQGK-MDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (687)
Q Consensus 375 a~~~~~~g~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (687)
-.++.+.|+ .++|.+++++..+.. |+. ..++ ..=.-++=...++.+-+.+|+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~--vtY~------~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQA--LFTA------VLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHH--HHHH------SCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCCh--hhcc------cccChhhHHHHHHHHHHhCcccC
Confidence 889999998 578999999998864 442 1111 11123333355555556666553
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.94 Score=46.20 Aligned_cols=105 Identities=13% Similarity=-0.005 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005626 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (687)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 266 (687)
...++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++......... +....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHH
Confidence 345778899999999999999999999877533 23677888888888999999999999888654222110 11122
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHHh
Q 005626 267 IALTDLGTKVKLEGDINQGVAYYKKALYY 295 (687)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (687)
......|.++...++|.+|...|-.++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 23333344455566666666666555543
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.56 E-value=2.4e-05 Score=77.91 Aligned_cols=266 Identities=14% Similarity=0.097 Sum_probs=187.1
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (687)
..++.|..+|...+..++..+|++.|-++ +++..+.....+..+.|++++=+.+++-+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 35666778899999999999998887654 34444555556666788888888888776554 3445555667777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005626 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (687)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (687)
|.+.++..+-.+.+ ..|+... ....|.-++..|.|+.|.-+|... + -|..|+.++..+|
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~--------iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~ 184 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH--------IQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLG 184 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC--------THHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCS
T ss_pred HHhhCcHHHHHHHH-----cCCCccc--------HHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHH
Confidence 88888765433322 1243333 455778888889998887776432 2 2456788888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHH
Q 005626 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (687)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A 285 (687)
+|..|.+..+++ +++.+|..........+++.-|.-+--..+-. ++. +-.+...|...|.+++-
T Consensus 185 ~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade----------L~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 185 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE----------LEELINYYQDRGYFEEL 248 (624)
T ss_dssp GGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC----------CSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH----------HHHHHHHHHhCCCHHHH
Confidence 999998877764 56778888888889999988887776655533 322 23466778889999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 005626 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPH------CAEACNNLGVIYKDRDNLDKAVE 355 (687)
Q Consensus 286 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~g~~~~A~~ 355 (687)
+.+++.++.+...+......||.+|.+- +.++-.++++..... -|. ....|..+..+|..-.+++.|..
T Consensus 249 IsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 249 ITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9999999998888999999999888765 455555554432221 122 24567888888888888887764
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.31 E-value=2.9 Score=48.69 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=52.9
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------------------CCCCHHHHHHHHHHHHHcCCHH
Q 005626 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------------------NPHCAEACNNLGVIYKDRDNLD 351 (687)
Q Consensus 295 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~g~~~ 351 (687)
..+.++...+.+|.++...|++++|..+|+++-.- ....+..|..+..++.+.+.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 34555555566666666666666666666554211 0111234455555666666666
Q ss_pred HHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 352 KAVECYQMALSIKPN-FS----QSLNNLGVVYTVQGKMDAAAEMIE 392 (687)
Q Consensus 352 ~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~ 392 (687)
.+++..+.|++..+. +. ..|.++-..+...|+|++|...+.
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 666666666655332 21 144555555566666666655553
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.34 E-value=27 Score=33.56 Aligned_cols=146 Identities=10% Similarity=-0.029 Sum_probs=77.6
Q ss_pred CchHhHHHHHHHHHhCCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 46 FEGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (687)
...+..+.+-+..+..|+| =||-+.++.+. .-|.++++|++|++++...
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~--------------~Ry~~~k~y~eAidLL~~G-------------- 61 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVA--------------ARYSKQGNWAAAVDILASV-------------- 61 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHH--------------HHHHhhcCHHHHHHHHHHH--------------
Confidence 3456667777777888888 77777766643 2356678888888766543
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 005626 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (687)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 201 (687)
+..+.+.|+...|.+...-.++. |..- ...--++....+.+.+...|. .+. ...
T Consensus 62 A~~ll~~~Q~~sg~DL~~llvev--------------y~~~-----~~~~~~~~~~rL~~L~~~~~~~~p~-r~~----- 116 (336)
T 3lpz_A 62 SQTLLRSGQGGSGGDLAVLLVDT--------------FRQA-----GQRVDGASRGKLLGCLRLFQPGEPV-RKR----- 116 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------------HHHH-----TCCCCHHHHHHHHHHHTTSCTTCHH-HHH-----
T ss_pred HHHHHHCCCcchHHHHHHHHHHH--------------HHHc-----CCCCCHHHHHHHHHHHHhCCCCCcH-HHH-----
Confidence 34455566666655544333221 0000 000112223333333333332 222 100
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005626 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (687)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (687)
=.++|+.+-.+.-...-.+++.+..+|..|.+.+++.+|..+|
T Consensus 117 ----fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 117 ----FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp ----HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 1233344333311123356788888888888888888887776
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.22 E-value=39 Score=32.23 Aligned_cols=81 Identities=10% Similarity=-0.114 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005626 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSLNNL 374 (687)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 374 (687)
.+++.+..+|..+.+.+++.+|..+|-..- .++++.+..+-.-+... |...+ .+.+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHH
Confidence 477888888888888888888877764210 01222222222211121 22222 2333333
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHH
Q 005626 375 G-VVYTVQGKMDAAAEMIEKAIA 396 (687)
Q Consensus 375 a-~~~~~~g~~~~A~~~~~~al~ 396 (687)
+ ..|...|+...|...++...+
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 3 245678888888888776553
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.98 E-value=39 Score=32.18 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=35.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (687)
..+..+.+-+..+..|+|=||.+.++.+.. -|.+++++++|++.+...
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~--------------Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIAN--------------RYVRSKSYEHAIELISQG 59 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH--------------HHHHhcCHHHHHHHHHHH
Confidence 466677777888888999999888877543 356677888888776554
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.00 E-value=65 Score=30.97 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005626 297 WHYADAMYNLGVAYGEMLKFDMAIVFY 323 (687)
Q Consensus 297 p~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (687)
-.+++.+..+|..+.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 357889999999999999999988877
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.10 E-value=45 Score=37.75 Aligned_cols=111 Identities=12% Similarity=-0.037 Sum_probs=67.2
Q ss_pred HhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CC--HHHHHHHHHHHHH
Q 005626 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP-SY--KPAAECLAIVLTD 162 (687)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~--~~~~~~la~~~~~ 162 (687)
..+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|+++-.--. .. .....
T Consensus 814 ~~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~-------- 881 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLR-------- 881 (950)
T ss_dssp HHHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGH--------
T ss_pred HHHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchh--------
Confidence 33566677778776544 35567788888889999999999999999999988753211 11 00000
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (687)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (687)
.....+ ...+........|.....++...+-++-+++..+.|++..
T Consensus 882 ------------~~~~ll-~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 882 ------------EFQEIA-EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp ------------HHHHHH-HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ------------hhhhcc-CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 000000 0001111122356667777777888888888888887653
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.65 E-value=58 Score=28.57 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (687)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (687)
.+|..++..+ ..++..++...|.-+... .-..+..|...|..+...|++.+|.+.|+..++..-
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3555555544 234467888888877765 456688888899999999999999999999987654
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.53 E-value=44 Score=37.87 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhh
Q 005626 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDSRNA 438 (687)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a 438 (687)
..|.....++...+-++-+++..+.|++. .++++..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 46778889999999999999999999975 4555543
No 272
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=65.35 E-value=55 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005626 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (687)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (687)
+|+-++-.+.+...+.-.+-+++.+..+|.+|.+.|+..+|.+.+.+|-
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444443333333333333334444444444444444444444444443
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.81 E-value=1.9e+02 Score=30.96 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=54.2
Q ss_pred CchHhHHHHHHHHHhCCCHHH-------HHHHHHHHHH-hCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHH
Q 005626 46 FEGKDALSYANILRSRNKFVD-------ALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~-------A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (687)
.+.+.++.+-....+.++-.. .+.-+++.+. ..|..-.. ..-.++...|+|+.|++++-+. ...+
T Consensus 252 ~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~-----~~vd 324 (661)
T 2qx5_A 252 LSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF-----SEMD 324 (661)
T ss_dssp CSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT-----CHHH
T ss_pred ccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc-----Cchh
Confidence 466777766666555443211 2455555553 33332222 4666777889999999988654 1222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH
Q 005626 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (687)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (687)
-..+|.++...|-+.. -...+..+++. ....++.+....... +...+..+|+++|--+
T Consensus 325 -AVH~AIaL~~~gLL~~----~~~lls~~~~~--~~lN~arLI~~Yt~~-F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 325 -AVHLAIGLASLKLFKI----DSSTRLTKKPK--RDIRFANILANYTKS-FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp -HHHHHHHHHHTTC-----------------------CHHHHHHHHHTT-TTTTCHHHHHHHHHGG
T ss_pred -HHHHHHHHHHcCCccC----CCcccccCCCc--ccccHHHHHHHHHHH-hhcCCHHHHHHHHHHH
Confidence 1233333333444432 12233333331 122233333222222 2556777888777554
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.59 E-value=52 Score=27.66 Aligned_cols=65 Identities=8% Similarity=-0.087 Sum_probs=47.0
Q ss_pred CchHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--H----HHHHh---HHHHHHHhCChHHHHHHHHHHHh
Q 005626 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN--V----EAHIG---KGICLQMQNMGRLAFDSFSEAVK 110 (687)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~----~~~~~---la~~~~~~g~~~~A~~~~~~al~ 110 (687)
.+....+..+..+++.|+|=+|-+.++.+-...+.. . ..+.. .|....+.|+...|...+.+++.
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345667889999999999999999999998776544 1 22222 23344567888888888888766
No 275
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=58.49 E-value=1.1e+02 Score=27.86 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=41.2
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHH-hCChHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFS 106 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~ 106 (687)
.+.++.+|+..-+.++|++.+...+++.+.++. +.+-...+..+|-. .|....+...+.
T Consensus 4 re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiis 64 (248)
T 3uzd_A 4 REQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVIS 64 (248)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 457888899999999999999999999887765 44555666666533 244444444443
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.12 E-value=57 Score=28.59 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (687)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (687)
..+|...+..+ ..++..++...|.-.... ....+..|...|..+...|++.+|...|+..++..-
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34444444443 133355666666665543 445566777777777778888888888887777653
No 277
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=57.06 E-value=0.035 Score=55.77 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=121.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (687)
+....-..|..++..|.|+.|.-+|..+ .-+..++.++..+|+|+.|.+..+++ +++..|-......
T Consensus 143 N~A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~AC 209 (624)
T 3lvg_A 143 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 209 (624)
T ss_dssp SSSCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHH
T ss_pred CcccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHH
Confidence 3344556778888888887777666543 22456788888888888888776654 6777888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005626 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (687)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (687)
...+++.-|.-+--..+-. ++. +..+...|...|.+++-+..++.++.+..-+......||.+|.+- +
T Consensus 210 vd~~EfrLAqicGLniIvh-ade----------L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHIVVH-ADE----------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HHSCTTTTTTHHHHHHHCC-SSC----------CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-C
T ss_pred hCchHHHHHHHhcchhccc-HHH----------HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-C
Confidence 8888888887776665543 332 334555677789999999999999988888888999999888654 4
Q ss_pred HHHHHHHHHHHHHh--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 005626 207 YDTALGCYEKAALE--RPM------YAEAYCNMGVIYKNRGDLESAIA 246 (687)
Q Consensus 207 ~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~g~~~~A~~ 246 (687)
.++-.+.++.-... -|. ....|..+..+|..-.+++.|..
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 55555554432110 121 23457777777888888887654
No 278
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=56.72 E-value=1.2e+02 Score=27.83 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=42.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC-CHHHHHhHHHHHHH-hCChHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SG-NVEAHIGKGICLQM-QNMGRLAFDSFSE 107 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~ 107 (687)
+-+.++.+|...-+.++|++.+.+.+++.+.+ +. +.+-...+..+|-. .|....+...+..
T Consensus 7 ~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 7 AREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 45778889999999999999999999999977 43 45555666666532 2333444444433
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.86 E-value=88 Score=26.30 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH-HHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVL-TDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~-~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
+..+..++..|+|-+|-+.++.+-...+.. .+.....+.+. ...|......|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455667777899999999999888776554 12333345555 55666667778888888888887764
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.26 E-value=2.2e+02 Score=30.40 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=21.9
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCC
Q 005626 404 AYNNLGVLY--RDAGSISLAIDAYEQCLKIDPDS 435 (687)
Q Consensus 404 ~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 435 (687)
.+..+..++ ...|++++|++.+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344445544 788999999999988 5677765
No 281
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=52.86 E-value=1.4e+02 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005626 192 PAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (687)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (687)
+-+..+|.+..+.++|++..++.+++.+.++
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~ 62 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDV 62 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 3444455555555555555555555555443
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=52.65 E-value=21 Score=36.24 Aligned_cols=16 Identities=0% Similarity=-0.072 Sum_probs=10.0
Q ss_pred HHHHHHhCCCcEEEec
Q 005626 558 VAAMVREDKIDILVEL 573 (687)
Q Consensus 558 ~a~~i~~d~idilvdl 573 (687)
+|..|+.--|+-=|+-
T Consensus 404 lA~LI~~G~IkGyIsh 419 (455)
T 3t5v_B 404 LVTLINLGLLRANCFP 419 (455)
T ss_dssp HHHHHHHTSCCEEEET
T ss_pred HHHHHHcCCeEEEEec
Confidence 6677777666655543
No 283
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=52.15 E-value=8.6 Score=24.34 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=23.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCcEEE
Q 005626 545 GIWRDIYGIDEKKVAAMVREDKIDILV 571 (687)
Q Consensus 545 ~~~~~~~~~~~~~~a~~i~~d~idilv 571 (687)
..|-++.|++-++++..|..|..|+-|
T Consensus 8 ~sWPELVG~~~~~A~~~I~~e~P~v~v 34 (45)
T 1hym_A 8 SSWPHLVGVGGSVAKAIIERQNPNVKA 34 (45)
T ss_dssp SBCCCCTTSCHHHHHHHHHHHCTTCEE
T ss_pred CcChhhcCCcHHHHHHHHHHHCCCCeE
Confidence 469999999999999999999888543
No 284
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.08 E-value=42 Score=23.82 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005626 53 SYANILRSRNKFVDALALYEIVLEKDSG 80 (687)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 80 (687)
.+|+.+...|++++|...|-+++...|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4555555555555555555555555544
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.66 E-value=17 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVL 75 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l 75 (687)
+-..-.+|+.++..|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456678999999999999999988765
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=51.24 E-value=37 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=15.6
Q ss_pred hHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 005626 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQ 114 (687)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (687)
.+|..+...|++++|...|-+|+...|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3555555555555555555555555544
No 287
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=50.99 E-value=1.5e+02 Score=27.17 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=43.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHH-hCChHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSE 107 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~ 107 (687)
+-+.++.+|+..-+.++|++.+...+++.+.++. +.+-...+..+|-. .|....+...+..
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiiss 92 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 92 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhH
Confidence 4678899999999999999999999999987765 45556666666533 2444444444433
No 288
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=50.98 E-value=1.5e+02 Score=27.20 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 193 AYYNLGVVYSELMQYDTALGCYEKAALER 221 (687)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (687)
-+..++.+..+.++|++...+.+++.+.+
T Consensus 30 ~~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 30 SNVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 33445555555555555555555555543
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.89 E-value=1.2e+02 Score=30.65 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=34.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 005626 197 LGVVYSELMQYDTALGCYEKAALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPN 257 (687)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 257 (687)
+-.+|++.++...+...++..-.... .....++.+|.++...++|.+|.+.+..|+.. .|.
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 34555666666655555544322211 11345666677777777777777777777766 554
No 290
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=49.67 E-value=1.5e+02 Score=26.76 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ 93 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~ 93 (687)
-+.++.+|....+.++|++.+.+.+++.+.++. +.+-...+..+|-
T Consensus 5 re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 5 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 567888999999999999999999999987764 4455566666653
No 291
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.64 E-value=80 Score=23.70 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005626 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (687)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (687)
..|..++..|+|=+|-+.++..-...|+ ++-....+.+....|......|+. |...+.+++..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 3456677778888888888888777754 333334455555555666667777 77777777653
No 292
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.00 E-value=48 Score=24.24 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=13.4
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 005626 165 TSLKLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~ 185 (687)
...-..|++++|+.+|.++++
T Consensus 27 ve~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 333445777777777776654
No 293
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=47.20 E-value=29 Score=37.38 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=32.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN 96 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 96 (687)
.+..+..|+..+..|+|.-|.++.+.++..+|++.++...++.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3455666666666677777777777766667766666666666665554
No 294
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=47.12 E-value=75 Score=23.21 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=22.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
.+-.++..|...-..|+|++|+.+|.++++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345567777777888888888888777765
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.68 E-value=1.3e+02 Score=25.33 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=35.8
Q ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 387 AAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 387 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+...|..+... .-..+..|...|..+...|++.+|.+.|+.+++....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 55566665554 4556778888888888999999999999988876543
No 296
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=44.97 E-value=58 Score=23.78 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=11.9
Q ss_pred HHcCChHHHHHHHHHHHh
Q 005626 168 KLAGNTQDGIQKYYEALK 185 (687)
Q Consensus 168 ~~~g~~~~A~~~~~~al~ 185 (687)
-..|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 344777777777766654
No 297
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=44.89 E-value=29 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=21.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
.+-.++..|...-..|+|++|+.+|..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345567777777777888888777776654
No 298
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=44.88 E-value=41 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=21.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEK 77 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (687)
.++.++..|..+++.++|.+|..+|+++...
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4556666777777777777777777776643
No 299
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.27 E-value=1.3e+02 Score=24.58 Aligned_cols=81 Identities=9% Similarity=-0.169 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005626 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (687)
Q Consensus 279 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (687)
-++....+..+-+.- .+.+..-..-..+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.
T Consensus 74 C~NlKrVi~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 456666666654421 1222222223456678888888888888777777789999999999999999999999999
Q ss_pred HHHhc
Q 005626 359 MALSI 363 (687)
Q Consensus 359 ~al~~ 363 (687)
+|-+.
T Consensus 150 ~AC~k 154 (172)
T 1wy6_A 150 EACKK 154 (172)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99775
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=43.61 E-value=72 Score=23.99 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005626 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (687)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (687)
-..+|..+...|+++.|+.+|-+|+...|.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 345666666667777777766666655443
No 301
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=43.24 E-value=2e+02 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005626 194 YYNLGVVYSELMQYDTALGCYEKAALER 221 (687)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (687)
+..++.+..+.++|++...+.+++.+.+
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 3445555555555555555555555544
No 302
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=42.38 E-value=2.2e+02 Score=26.96 Aligned_cols=127 Identities=7% Similarity=0.046 Sum_probs=66.3
Q ss_pred CeEEEEecCC--------c---cc---chHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCC
Q 005626 487 PLVIGYVSPD--------Y---FT---HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 552 (687)
Q Consensus 487 ~lriGy~S~d--------f---~~---h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 552 (687)
+.||.+++.. | .. .-+...+..+.+.+.+..++|++++........ +...-+..
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~ 70 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPA 70 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSC
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccC
Confidence 4789999988 3 11 223445556666666667889888765432211 01111122
Q ss_pred CCHHHHHHHHHhCCCcEEEecCCCCCCCcchhhccCCCceEEecccCCCCCCCCCccEEEecCCCCCccc-cccc--ccc
Q 005626 553 IDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPET-KQKH--VEE 629 (687)
Q Consensus 553 ~~~~~~a~~i~~d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p~t~g~~~~Dy~i~d~~~~p~~~-~~~~--~E~ 629 (687)
.....+.+.|+..++||++--..+... ......-.| -+++-|..... .. +|.++.+-.. ...+ .++
T Consensus 71 ~~~~~l~~~l~~~~~Dvi~~~~~~~~~---~~~~~~~~p-v~~~h~~~~~~--~~-----~d~ii~~S~~~~~~~~~~~~ 139 (342)
T 2iuy_A 71 GEPEEIERWLRTADVDVVHDHSGGVIG---PAGLPPGTA-FISSHHFTTRP--VN-----PVGCTYSSRAQRAHCGGGDD 139 (342)
T ss_dssp CSHHHHHHHHHHCCCSEEEECSSSSSC---STTCCTTCE-EEEEECSSSBC--SC-----CTTEEESCHHHHHHTTCCTT
T ss_pred CcHHHHHHHHHhcCCCEEEECCchhhH---HHHhhcCCC-EEEecCCCCCc--cc-----ceEEEEcCHHHHHHHhcCCc
Confidence 234478899999999999865544321 112223355 44444443221 11 4444433322 2222 366
Q ss_pred eeecCCC
Q 005626 630 LIRLPEC 636 (687)
Q Consensus 630 l~~lp~~ 636 (687)
+..+|+.
T Consensus 140 ~~vi~ng 146 (342)
T 2iuy_A 140 APVIPIP 146 (342)
T ss_dssp SCBCCCC
T ss_pred eEEEcCC
Confidence 7777764
No 303
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.13 E-value=53 Score=24.39 Aligned_cols=32 Identities=22% Similarity=0.099 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH
Q 005626 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (687)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (687)
....+..+...+..+...|+|++|+++.+++.
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455666667777777777777777665543
No 304
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=41.24 E-value=2.1e+02 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=10.8
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 005626 412 YRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~ 430 (687)
|.-+++.++|....++++.
T Consensus 184 YEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 184 YEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3346666666666555543
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=40.92 E-value=55 Score=28.91 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005626 119 HTHCGILYKDEGRLVEAAESYHKALSADP 147 (687)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 147 (687)
.+.+|.++...++|.+|.+.+..|+...|
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 34444444444444444444444444443
No 306
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=40.81 E-value=40 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
.+..++..|...-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777777788888888888777664
No 307
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.51 E-value=1.6e+02 Score=28.28 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHH
Q 005626 62 NKFVDALALYEIVLE 76 (687)
Q Consensus 62 g~~~~A~~~~~~~l~ 76 (687)
...+..+++|+..+.
T Consensus 14 ~~i~~Vv~lF~~~L~ 28 (472)
T 3re2_A 14 KDIKSVVEVFRQELR 28 (472)
T ss_dssp CSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhc
Confidence 455666777777666
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.31 E-value=1e+02 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=19.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
+-.++..|...-+.|+|++|+.+|.++++
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34466667777777777777777766654
No 309
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.13 E-value=1.2e+02 Score=22.72 Aligned_cols=61 Identities=13% Similarity=-0.000 Sum_probs=33.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHH
Q 005626 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (687)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 294 (687)
.|..++..|+|=+|-+.++..-...|+ +......+.+....+......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 455566678888888888877776643 222223333333444444444554 5555555543
No 310
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=37.90 E-value=2.5e+02 Score=32.66 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=29.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH
Q 005626 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM 94 (687)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 94 (687)
..+.+-+.+++.++|+++++..|++..++..+-..+..
T Consensus 1116 ~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1116 SQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 34555567889999999999999998888877776654
No 311
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.79 E-value=2.1e+02 Score=27.56 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 353 AVECYQMALSI-----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 353 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
++..|.+++.. ...+..-+..+|-.+++.+++.+|+..+-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 55566666544 3345567777888888888888888888777654
No 312
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=36.55 E-value=66 Score=29.56 Aligned_cols=43 Identities=9% Similarity=-0.161 Sum_probs=29.1
Q ss_pred eEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCC
Q 005626 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD 530 (687)
Q Consensus 488 lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d 530 (687)
++||++.++..+.-...++.++-+......+++..+......|
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~ 43 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGD 43 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTC
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCC
Confidence 5899999988765556666666665555678888775433334
No 313
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.49 E-value=80 Score=23.73 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=17.9
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHHhCCC
Q 005626 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (687)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 298 (687)
-..+|+.+...|+++.|+.+|-+|+...|+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344555555566677777766666655443
No 314
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.34 E-value=1e+02 Score=27.11 Aligned_cols=35 Identities=14% Similarity=-0.079 Sum_probs=31.5
Q ss_pred HHHHHhHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 005626 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (687)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (687)
....+.+|..++..++|.+|.+.+..|++..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 46788999999999999999999999999988654
No 315
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=36.04 E-value=1.9e+02 Score=24.11 Aligned_cols=89 Identities=15% Similarity=0.047 Sum_probs=61.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCChHH-HHHHHHHHHhcCCCCHHHHHHHHH
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRL-AFDSFSEAVKLDPQNACAHTHCGI 124 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~ 124 (687)
-...+..|...+-+.+|.+.+..++.. +|. .....+.+|..|....++.+ ..+....-+.+.. .-.+.+-+
T Consensus 8 ~q~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS---de~yL~YW 81 (161)
T 2ynq_A 8 KQEAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT---DEQYMLYW 81 (161)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS---CHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC---CHHHHHHH
Confidence 345677888999999999999987763 333 35688999999998877653 3333322222222 22334456
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 005626 125 LYKDEGRLVEAAESYHKA 142 (687)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a 142 (687)
++...|++++|+..-+..
T Consensus 82 IyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 82 IYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHhc
Confidence 788899999999887765
No 316
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.89 E-value=31 Score=25.91 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHH
Q 005626 348 DNLDKAVECYQMA 360 (687)
Q Consensus 348 g~~~~A~~~~~~a 360 (687)
|++++|+.+|..+
T Consensus 29 g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 29 SRYQQALVCYQEG 41 (93)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 317
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=35.54 E-value=14 Score=36.72 Aligned_cols=186 Identities=15% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCCCeEEEEecCCcccc--hHHHHHHhhccccCCCceEEEEEecCCCCChHh---------HHHHHHhhhcCCceEeCCC
Q 005626 484 PERPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT---------IRFREKVMKKGGIWRDIYG 552 (687)
Q Consensus 484 ~~~~lriGy~S~df~~h--~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~---------~~~~~~~~~~~~~~~~~~~ 552 (687)
..++.||.++++.+... -+...+..+.+.+....++|++++......... .++... ..+.. ..
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~ 90 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYN-----GSVAR-LR 90 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------------
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEecccc-----CCccc-cc
Confidence 35678999999876443 223445555555555568888886654322110 000000 00000 01
Q ss_pred CC---HHHHHHHHHhCCCcEEEecCCCCCCCcchhhcc--CCCceEEecccCCCCC------------CCCCccEEEecC
Q 005626 553 ID---EKKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTT------------GLPTIDYRITDS 615 (687)
Q Consensus 553 ~~---~~~~a~~i~~d~idilvdl~g~t~~~r~~~~a~--r~APvq~~~lG~p~t~------------g~~~~Dy~i~d~ 615 (687)
.. ...+.+.|+..++||++--....... ..++. ...|+-++.-+..... -+...|.+|+-.
T Consensus 91 ~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 168 (406)
T 2gek_A 91 FGPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVS 168 (406)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH--HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESS
T ss_pred ccHHHHHHHHHHHHhcCCCEEEECCccchHH--HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECC
Confidence 12 24677888888999998655444332 22222 2467777666643221 124456665432
Q ss_pred CCCCccccccc-ccceeecCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC---CCCCHHHHHHHhhhhh
Q 005626 616 LADPPETKQKH-VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL---AKVLVRSYLCLDKCST 684 (687)
Q Consensus 616 ~~~p~~~~~~~-~E~l~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~fn~~---~k~~~~~~~~w~~~~~ 684 (687)
-..-......| .+++ .+|+..-. +.|.. ..+..+.+.++++++.+. .|=.+..+.+|.++..
T Consensus 169 ~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~------~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~ 236 (406)
T 2gek_A 169 DLARRWQMEALGSDAV-EIPNGVDVASFADAP------LLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVA 236 (406)
T ss_dssp HHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCC------CCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcE-EecCCCChhhcCCCc------hhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHH
Confidence 11000111122 3456 77764310 11111 112223244456666655 6777888888887753
No 318
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=35.42 E-value=2.5e+02 Score=25.29 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 005626 242 ESAIACYERCLA-----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (687)
Q Consensus 242 ~~A~~~~~~al~-----~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al 293 (687)
+.|...|++|.+ +.|.++. .++.++.--.-.|.-.++.++|....++++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPi---rLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPI---RLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566677777654 4566652 233333332333445677777777766664
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.34 E-value=32 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEK 77 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (687)
.-..+.+|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445677888888888888888888887763
No 320
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=35.27 E-value=21 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=26.9
Q ss_pred ChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEE
Q 005626 530 DAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDIL 570 (687)
Q Consensus 530 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idil 570 (687)
+.+...++..+..+ -.-.++||.++++.+.+.||+|-
T Consensus 19 ~~Ik~~Ik~lI~~E----d~~kPlSD~~I~~~L~~~Gi~Ia 55 (76)
T 2ahq_A 19 GELMKLIKEIVENE----DKRKPYSDQEIANILKEKGFKVA 55 (76)
T ss_dssp HHHHHHHHHHGGGC----CSSSCCCHHHHHHHHTTTSSCCC
T ss_pred HHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHcCCCcc
Confidence 34566666666432 23467999999999999999873
No 321
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=34.99 E-value=2.5e+02 Score=25.24 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=44.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHH-hCChHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (687)
+-+.++.+|...-+.++|++.+...+++.+.++. +.+-...+..+|-. .|....+...+...
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissi 70 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSI 70 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 4578899999999999999999999999988765 45566666666643 24444555554433
No 322
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=34.33 E-value=2.7e+02 Score=25.45 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=42.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CC-CHHHHHhHHHHHHHh-CChHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD---SG-NVEAHIGKGICLQMQ-NMGRLAFDSFS 106 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-~~~~~~~la~~~~~~-g~~~~A~~~~~ 106 (687)
+-+.++.+|....+.++|++.+.+.+++.+.+ +. +.+-...+..+|-.. |....+...+.
T Consensus 27 ~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiis 91 (260)
T 2npm_A 27 ARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIIS 91 (260)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788899999999999999999999999976 43 455666666666432 33334444443
No 323
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=33.64 E-value=1.1e+02 Score=27.98 Aligned_cols=84 Identities=6% Similarity=-0.022 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHh
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 564 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 564 (687)
++..+||++.+++.+.-...++.++-+......+++..+......+.....++.......|...-..... .+..+.+.+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~~ 83 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEILH 83 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHHT
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHHH
Confidence 5678999999998665556677777666667779988876543222222333333333334444333233 556666666
Q ss_pred CCCcE
Q 005626 565 DKIDI 569 (687)
Q Consensus 565 d~idi 569 (687)
.+|=+
T Consensus 84 ~~iPv 88 (276)
T 3jy6_A 84 QQMPV 88 (276)
T ss_dssp TSSCE
T ss_pred CCCCE
Confidence 66654
No 324
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=33.29 E-value=79 Score=29.13 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=54.4
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHh
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 564 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 564 (687)
++..+||++.+++.+.-...++.++-+......+++..+... ..+... +..+.+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~-----------------------~~~~~l~~ 58 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGT-----------------------DPITSALS 58 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSS-----------------------CHHHHHHT
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHH-----------------------HHHHHHHh
Confidence 456789999988765555666666666666667888887654 221111 24455667
Q ss_pred CCCcEEEecCCCCCCCcchhhccCCCceEEecccCCCCCCCCCccEEEec
Q 005626 565 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITD 614 (687)
Q Consensus 565 d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p~t~g~~~~Dy~i~d 614 (687)
.++|-+| .........+ .. +.|-|..+|.+.. .-+.++++.+|
T Consensus 59 ~~vdgiI-~~~~~~~~~~---~~--~~iPvV~~~~~~~-~~~~~~~V~~D 101 (280)
T 3gyb_A 59 MRPDGII-IAQDIPDFTV---PD--SLPPFVIAGTRIT-QASTHDSVAND 101 (280)
T ss_dssp TCCSEEE-EESCC-------------CCCEEEESCCCS-SSCSTTEEEEC
T ss_pred CCCCEEE-ecCCCChhhH---hh--cCCCEEEECCCCC-CCCCCCEEEec
Confidence 7888888 5433332222 12 4444555554431 12456777776
No 325
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=32.23 E-value=3.2e+02 Score=25.92 Aligned_cols=86 Identities=9% Similarity=-0.046 Sum_probs=49.1
Q ss_pred CCCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHH
Q 005626 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR 563 (687)
Q Consensus 484 ~~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 563 (687)
.++.-+||++.+++.+.-...++.++-+......+.+..+......+.....++.......|...-+....+.+..+.+.
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~ 144 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLD 144 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHH
Confidence 34567899999988766666777777777777788888775443222223333333333334433332222334555555
Q ss_pred hCCCcE
Q 005626 564 EDKIDI 569 (687)
Q Consensus 564 ~d~idi 569 (687)
+.+|=+
T Consensus 145 ~~~iPv 150 (344)
T 3kjx_A 145 AAGIPV 150 (344)
T ss_dssp HCSSCE
T ss_pred hCCCCE
Confidence 555543
No 326
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.91 E-value=2.5e+02 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=11.7
Q ss_pred hCCCHHHHHHHHHHHHHh
Q 005626 60 SRNKFVDALALYEIVLEK 77 (687)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~ 77 (687)
=....+..+++|+.-+..
T Consensus 12 Plr~i~~Vv~lF~~~L~~ 29 (550)
T 3u84_A 12 PLRSIDDVVRLFAAELGR 29 (550)
T ss_dssp CBCSHHHHHHHHHHHHTS
T ss_pred CccchHHHHHHHHHHhcC
Confidence 345566777777777763
No 327
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=31.33 E-value=63 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=19.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
.+..++..|...-..|+|++|+.+|..+++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666666677777777777766654
No 328
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=31.24 E-value=3.6e+02 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=12.6
Q ss_pred HHhCCCHHHHHHHHHHHHHh
Q 005626 58 LRSRNKFVDALALYEIVLEK 77 (687)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~ 77 (687)
++=....+.-+.+|+..+..
T Consensus 15 ~FPl~~i~~vv~lf~~~L~~ 34 (489)
T 4gq4_A 15 LFPLRSIDDVVRLFAAELGR 34 (489)
T ss_dssp TCSBCSHHHHHHHHHHHHTS
T ss_pred cCCcccHHHHHHHHHHHhcC
Confidence 34445667777777777743
No 329
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=31.04 E-value=70 Score=29.77 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=28.9
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecC
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 526 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~ 526 (687)
++..+||++.++..+.-...++.++-+......+++..+...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 566899999998766555666777766666667888887654
No 330
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.52 E-value=55 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=18.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005626 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (687)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (687)
.+..++..|...-..|+|++|+.+|..+++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344456666666666777777777666554
No 331
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=30.46 E-value=79 Score=29.55 Aligned_cols=43 Identities=12% Similarity=-0.126 Sum_probs=28.1
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCC
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVV 527 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~ 527 (687)
++..+||++.++..+.-...++.++-+......+++..+....
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~ 45 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG 45 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 4678999999988655455566666555555568888776543
No 332
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.75 E-value=3.3e+02 Score=26.81 Aligned_cols=61 Identities=7% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
+...++..|...|+.++|...++++-.. +|. ....+...+..+...+++..+....-.++.
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555566666666666666655432 110 123344455555666666665555555543
No 333
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=29.73 E-value=1.4e+02 Score=28.24 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=45.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCcchhhccCCCceEE-ecccCCCCC
Q 005626 545 GIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV-TWIGYPNTT 603 (687)
Q Consensus 545 ~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~r~~~~a~r~APvq~-~~lG~p~t~ 603 (687)
+....|.....+.+.+.+.+ |.||+=|.+|......+++.+..-+||-+ .+-|-|.|+
T Consensus 105 ~vpISIDT~~~~Va~aAl~a-Ga~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tm 163 (314)
T 3tr9_A 105 PQLISVDTSRPRVMREAVNT-GADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKP 163 (314)
T ss_dssp CSEEEEECSCHHHHHHHHHH-TCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCT
T ss_pred CCeEEEeCCCHHHHHHHHHc-CCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCccc
Confidence 56677766777666666666 99999999999977778888888889874 577888876
No 334
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.69 E-value=2.8e+02 Score=24.52 Aligned_cols=73 Identities=10% Similarity=-0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005626 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDL-GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (687)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (687)
.+.|+..++.+-+..+-....+...-.+.... -.++...|.+++|.+.+++.+..++.+-.....|..+-.+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 45566666666554443333222222222222 22345566777777777776665555444444444444333
No 335
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.69 E-value=3e+02 Score=27.14 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005626 353 AVECYQMALSI-----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (687)
Q Consensus 353 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (687)
++..|.+++.. ...+..-|..+|-.+++.+++.+|+..+-.+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 44555555443 2344556677777777788888887777766543
No 336
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.31 E-value=1.3e+02 Score=27.91 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=44.8
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhH---HHHHHhhhcCCceEeCCCCCHHHHHHH
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTI---RFREKVMKKGGIWRDIYGIDEKKVAAM 561 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~ 561 (687)
++..+||++.++..+.-...++.++-+......+++..+......+.... .++.......|...-.....+.+..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 85 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDE 85 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHHHH
Confidence 45678999998876544455666665555555688877654433333333 344333333354443322222344555
Q ss_pred HHhCCCcE
Q 005626 562 VREDKIDI 569 (687)
Q Consensus 562 i~~d~idi 569 (687)
+.+.+|=|
T Consensus 86 l~~~~iPv 93 (290)
T 2rgy_A 86 LHRMHPKM 93 (290)
T ss_dssp HHHHCSSE
T ss_pred HhhcCCCE
Confidence 66556553
No 337
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.24 E-value=3.1e+02 Score=24.44 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005626 385 DAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (687)
Q Consensus 385 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (687)
+++..+|.-+... .-..+..|...|..+...|++.+|.+.|+..++..-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4566677766654 4566888999999999999999999999999986543
No 338
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.59 E-value=61 Score=23.35 Aligned_cols=26 Identities=4% Similarity=-0.060 Sum_probs=18.6
Q ss_pred HHhHHHHHHHhCChHHHHHHHHHHHh
Q 005626 85 HIGKGICLQMQNMGRLAFDSFSEAVK 110 (687)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~ 110 (687)
...+|+-+...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34567777777788777777777665
No 339
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=27.70 E-value=2.5e+02 Score=24.91 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCCeEEEEe-cCCcccchHHHHHHhhccccCCC--ceEEEEE-ecCCCCChHhHHHHHHhhhcCCceE-eCCCCCHHHHH
Q 005626 485 ERPLVIGYV-SPDYFTHSVSYFIEAPLVYHDYQ--NYKVVVY-SAVVKADAKTIRFREKVMKKGGIWR-DIYGIDEKKVA 559 (687)
Q Consensus 485 ~~~lriGy~-S~df~~h~v~~~~~~~~~~~d~~--~fev~~y-~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 559 (687)
.++.||+.+ |+. . .++..++...... .+||.+- +..+..-. .++.++. ....+. +-...++.++.
T Consensus 6 ~~~~ri~vl~SG~--g----snl~all~~~~~~~~~~~I~~Vis~~~~a~~-l~~A~~~---gIp~~~~~~~~~~~~~~~ 75 (215)
T 3kcq_A 6 KKELRVGVLISGR--G----SNLEALAKAFSTEESSVVISCVISNNAEARG-LLIAQSY---GIPTFVVKRKPLDIEHIS 75 (215)
T ss_dssp -CCEEEEEEESSC--C----HHHHHHHHHTCCC-CSEEEEEEEESCTTCTH-HHHHHHT---TCCEEECCBTTBCHHHHH
T ss_pred CCCCEEEEEEECC--c----HHHHHHHHHHHcCCCCcEEEEEEeCCcchHH-HHHHHHc---CCCEEEeCcccCChHHHH
Confidence 457888865 543 2 3344555444332 4788754 43332222 2222221 112222 22345678999
Q ss_pred HHHHhCCCcEEEecCCCCCC
Q 005626 560 AMVREDKIDILVELTGHTAN 579 (687)
Q Consensus 560 ~~i~~d~idilvdl~g~t~~ 579 (687)
+.|++.++|++| +.|++.-
T Consensus 76 ~~L~~~~~Dliv-lagy~~I 94 (215)
T 3kcq_A 76 TVLREHDVDLVC-LAGFMSI 94 (215)
T ss_dssp HHHHHTTCSEEE-ESSCCSC
T ss_pred HHHHHhCCCEEE-EeCCceE
Confidence 999999999887 5566543
No 340
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=27.52 E-value=1.4e+02 Score=28.52 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCeEEEEecCC-cccchHHHHHHhhccccCCCceEEEEEecCCC-C---------ChHhHHHHHHhhhcCCceEeCCCCC
Q 005626 486 RPLVIGYVSPD-YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-A---------DAKTIRFREKVMKKGGIWRDIYGID 554 (687)
Q Consensus 486 ~~lriGy~S~d-f~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~-~---------d~~~~~~~~~~~~~~~~~~~~~~~~ 554 (687)
+++||.|+... |-.+....++. . .+||.+--+.++ . ..+.++.++.- ... .....+.
T Consensus 2 ~~mrIvf~Gt~~fa~~~L~~L~~----~----~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~g---Ipv-~~~~~~~ 69 (314)
T 1fmt_A 2 ESLRIIFAGTPDFAARHLDALLS----S----GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG---LPV-FQPVSLR 69 (314)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHH----T----TCEEEEEECCCCBC------CBCCHHHHHHHHTT---CCE-ECCSCSC
T ss_pred CCCEEEEEecCHHHHHHHHHHHH----C----CCcEEEEEeCCCCccccccccCcCHHHHHHHHcC---CcE-EecCCCC
Confidence 45899988553 54444333332 1 368775544432 1 23333222211 122 2333455
Q ss_pred HHHHHHHHHhCCCcEEEe
Q 005626 555 EKKVAAMVREDKIDILVE 572 (687)
Q Consensus 555 ~~~~a~~i~~d~idilvd 572 (687)
+.++.+.|++.++|++|=
T Consensus 70 ~~~~~~~l~~~~~Dliv~ 87 (314)
T 1fmt_A 70 PQENQQLVAELQADVMVV 87 (314)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHhcCCCEEEE
Confidence 778999999999998884
No 341
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=27.17 E-value=2.1e+02 Score=25.36 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=43.7
Q ss_pred CCCCeEEEEecCCcccchHHHHHHhhccccC-CCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCC--------
Q 005626 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHD-YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID-------- 554 (687)
Q Consensus 484 ~~~~lriGy~S~df~~h~v~~~~~~~~~~~d-~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------- 554 (687)
|..+.||+++.+. ..| ++..++.... ...+||.+-.+.+. ...-++.++.- ...+ .+ ...
T Consensus 9 ~~~~~ri~vl~SG-~gs----nl~all~~~~~~~~~eI~~Vis~~~-a~~~~~A~~~g---Ip~~-~~-~~~~~~~r~~~ 77 (215)
T 3da8_A 9 PSAPARLVVLASG-TGS----LLRSLLDAAVGDYPARVVAVGVDRE-CRAAEIAAEAS---VPVF-TV-RLADHPSRDAW 77 (215)
T ss_dssp CCSSEEEEEEESS-CCH----HHHHHHHHSSTTCSEEEEEEEESSC-CHHHHHHHHTT---CCEE-EC-CGGGSSSHHHH
T ss_pred CCCCcEEEEEEeC-ChH----HHHHHHHHHhccCCCeEEEEEeCCc-hHHHHHHHHcC---CCEE-Ee-Ccccccchhhh
Confidence 4678899987332 233 3344443332 23478876544442 23322322211 1222 22 211
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCC
Q 005626 555 EKKVAAMVREDKIDILVELTGHTA 578 (687)
Q Consensus 555 ~~~~a~~i~~d~idilvdl~g~t~ 578 (687)
+.++.+.|++.++|++| +.|++.
T Consensus 78 d~~~~~~l~~~~~Dliv-lagy~~ 100 (215)
T 3da8_A 78 DVAITAATAAHEPDLVV-SAGFMR 100 (215)
T ss_dssp HHHHHHHHHTTCCSEEE-EEECCS
T ss_pred hHHHHHHHHhhCCCEEE-EcCchh
Confidence 56889999999999877 455553
No 342
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.16 E-value=96 Score=24.43 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=7.3
Q ss_pred HcCCHHHHHHHHHH
Q 005626 380 VQGKMDAAAEMIEK 393 (687)
Q Consensus 380 ~~g~~~~A~~~~~~ 393 (687)
..|++++|+.+|..
T Consensus 30 ~ag~y~eAl~lY~~ 43 (117)
T 2cpt_A 30 KAGNYEEALQLYQH 43 (117)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HccCHHHHHHHHHH
Confidence 34555555555544
No 343
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.31 E-value=4.6e+02 Score=25.86 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=37.5
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHH
Q 005626 353 AVECYQMALSI-----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVL 411 (687)
Q Consensus 353 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~ 411 (687)
++..|++|+.. ...+...|..+|-.+.+.+++.+|+..+..+-.. ..++.++|..+-.+
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 44555555553 2344566777788888888888888888877653 34455665544433
No 344
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.53 E-value=2.6e+02 Score=27.54 Aligned_cols=93 Identities=8% Similarity=-0.108 Sum_probs=56.0
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcC-------C----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-
Q 005626 89 GICLQMQNMGRLAFDSFSEAVKLD-------P----------QNACAHTHCGILYKDEGRLVEAAESYHKALSA---DP- 147 (687)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~-------p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~- 147 (687)
..+.....+.++|++.+++....- . ....+...++..|...|+.++|...++++-.. ..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 445566778999999998764321 0 01335567788899999999999999888542 11
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH
Q 005626 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (687)
Q Consensus 148 ~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (687)
-++. ..+..+...+..+...+++..+....-..+
T Consensus 163 ~~~~---v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 163 IPLR---ITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp SSSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111 123334445555555666655554444443
No 345
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=24.30 E-value=1.1e+02 Score=28.45 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEE
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVY 523 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y 523 (687)
++..+||++.+++.+.-...++.++-+......+++..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 44 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV 44 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE
Confidence 456789999998766555666666666656666888766
No 346
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=23.55 E-value=1e+02 Score=28.48 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=28.9
Q ss_pred CCCeEEEEecCC-----cccchHHHHHHhhccccCCCceEEEEEec
Q 005626 485 ERPLVIGYVSPD-----YFTHSVSYFIEAPLVYHDYQNYKVVVYSA 525 (687)
Q Consensus 485 ~~~lriGy~S~d-----f~~h~v~~~~~~~~~~~d~~~fev~~y~~ 525 (687)
++..+||++.++ +.+.-...++.++-+......+++..+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 51 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTG 51 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 566889999998 66655666677766666666788887654
No 347
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=23.42 E-value=1.2e+02 Score=28.16 Aligned_cols=84 Identities=7% Similarity=0.007 Sum_probs=41.0
Q ss_pred CCCeEEEEecCC--cccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCC-CCHHHHHHH
Q 005626 485 ERPLVIGYVSPD--YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG-IDEKKVAAM 561 (687)
Q Consensus 485 ~~~lriGy~S~d--f~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~ 561 (687)
++..+||++.++ +.+.-...++.++-.......+++..+......+.....++.......|...-... .++ +..+.
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~~ 95 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEIDD 95 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHHHH
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHHHH
Confidence 456789999888 65544455555655544455678877654322222222333333333344433222 233 44455
Q ss_pred HHh-CCCcE
Q 005626 562 VRE-DKIDI 569 (687)
Q Consensus 562 i~~-d~idi 569 (687)
+.+ .+|=+
T Consensus 96 l~~~~~iPv 104 (296)
T 3brq_A 96 IIDAHSQPI 104 (296)
T ss_dssp HHHTCSSCE
T ss_pred HHhcCCCCE
Confidence 666 56654
No 348
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=28.71 E-value=18 Score=38.98 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=35.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCh
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 98 (687)
.+..+..|+..+..|+|.-|.++++.++..+|++.++...++.+|.++|.-
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 511 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQ 511 (668)
Confidence 455666777777777777777777777777777777777777777666643
No 349
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.75 E-value=1e+02 Score=28.72 Aligned_cols=40 Identities=0% Similarity=-0.148 Sum_probs=27.4
Q ss_pred CCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEec
Q 005626 486 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 525 (687)
Q Consensus 486 ~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~ 525 (687)
.+++||++.++..+.-...++.++-+......+++..+..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 41 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAP 41 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECC
Confidence 4689999999985444556666666555556688887753
No 350
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.71 E-value=3.5e+02 Score=23.90 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 005626 282 INQGVAYYKKALYYNWHYADA--------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (687)
Q Consensus 282 ~~~A~~~~~~al~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 338 (687)
.+.|+..++..-+..+-.... -.....++.+.|.|++|.+.+++....++.+.....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~ 152 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRN 152 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHH
Confidence 455666666555444322211 112223344555555555555555554443333333
No 351
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=22.62 E-value=68 Score=32.17 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=16.0
Q ss_pred CCCcEEEecCCCCCCCcchhhccCCCceEEecccCC
Q 005626 565 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600 (687)
Q Consensus 565 d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p 600 (687)
++++|.||.++.-.....--++.+.++..+.|+=-|
T Consensus 221 ~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEqP 256 (422)
T 3tji_A 221 WKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIEDI 256 (422)
T ss_dssp SSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEECC
Confidence 455566665543333222233344444444444433
No 352
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.29 E-value=9.8e+02 Score=27.95 Aligned_cols=31 Identities=10% Similarity=-0.028 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005626 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (687)
Q Consensus 281 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 311 (687)
+.+++.++|+++++.+|++..++..+-..+.
T Consensus 1122 ~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 4678889999999999999888777665554
No 353
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.17 E-value=81 Score=29.29 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEec
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 525 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~ 525 (687)
++..+||++.+++.+.-...++.++-+......+++..+..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 46 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT 46 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56688999999876655566677776666666788888754
No 354
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.93 E-value=86 Score=28.74 Aligned_cols=84 Identities=6% Similarity=0.076 Sum_probs=42.9
Q ss_pred CCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhC
Q 005626 486 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRED 565 (687)
Q Consensus 486 ~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d 565 (687)
+.-+||++.+++.++-...++.++-+......+++..+......+.....++.......|...-.....+.+..+.+.+.
T Consensus 2 ~s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~ 81 (275)
T 3d8u_A 2 NAYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS 81 (275)
T ss_dssp --CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH
T ss_pred CceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC
Confidence 34579999988765545556666655555556777766433222222233344333334544433222223455556655
Q ss_pred CCcE
Q 005626 566 KIDI 569 (687)
Q Consensus 566 ~idi 569 (687)
+|=+
T Consensus 82 ~iPv 85 (275)
T 3d8u_A 82 NTPV 85 (275)
T ss_dssp TCCE
T ss_pred CCCE
Confidence 6553
No 355
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.61 E-value=1.7e+02 Score=26.86 Aligned_cols=86 Identities=7% Similarity=-0.078 Sum_probs=49.2
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCC---HHHHHHH
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID---EKKVAAM 561 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~ 561 (687)
.+..+||++-++..+.-...++.++-+......+++..+......+.....++.......|... +.+.+ ..+..+.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-i~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAII-EQLGNLDVLNPWLQK 81 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEE-EESSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEE-EeCCChhhhHHHHHH
Confidence 3567899999987654445666777666666678988875443222223333433333345444 23333 2455666
Q ss_pred HHhCCCcEEE
Q 005626 562 VREDKIDILV 571 (687)
Q Consensus 562 i~~d~idilv 571 (687)
+.+.+|=|++
T Consensus 82 ~~~~~iPvV~ 91 (291)
T 3l49_A 82 INDAGIPLFT 91 (291)
T ss_dssp HHHTTCCEEE
T ss_pred HHHCCCcEEE
Confidence 6666766433
No 356
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.52 E-value=1.2e+02 Score=32.42 Aligned_cols=52 Identities=21% Similarity=0.134 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 005626 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (687)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~lg~~ 166 (687)
........|...+..|+|.-|.+....++..+|++.++...++.++..+|..
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 4455667777788888999999999999999999988888888888888753
No 357
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=21.50 E-value=76 Score=31.62 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.9
Q ss_pred CccEEEec
Q 005626 607 TIDYRITD 614 (687)
Q Consensus 607 ~~Dy~i~d 614 (687)
.+|++.-|
T Consensus 252 a~d~v~~d 259 (405)
T 3rr1_A 252 GVSILQPD 259 (405)
T ss_dssp CCSEECCB
T ss_pred CCCeEEEC
Confidence 34555544
No 358
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=21.44 E-value=1.7e+02 Score=26.87 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=42.2
Q ss_pred CCeEEEEecCC-c---ccchHHHHHHhhccccCCCceEEEEEecCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHH
Q 005626 486 RPLVIGYVSPD-Y---FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAM 561 (687)
Q Consensus 486 ~~lriGy~S~d-f---~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 561 (687)
+.-+||++.++ + .+.-...++.++-+......+++..+......+.....++.......|...-.....+.+..+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 82 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQF 82 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTCHHHHH
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCcHHHHH
Confidence 45689999988 7 5554556666665555555688877643322222222333333223344433322112244455
Q ss_pred HHhCCCc
Q 005626 562 VREDKID 568 (687)
Q Consensus 562 i~~d~id 568 (687)
+.+.+|=
T Consensus 83 l~~~~iP 89 (287)
T 3bbl_A 83 LLKQKFP 89 (287)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 5555554
No 359
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.37 E-value=1.4e+02 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 005626 410 VLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~ 430 (687)
.-....|++++|+.+|..+++
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334567777777777777664
No 360
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=21.24 E-value=3.2e+02 Score=24.94 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCcc--cchHHHHHHhhccccCCCceEEEEEec
Q 005626 485 ERPLVIGYVSPDYF--THSVSYFIEAPLVYHDYQNYKVVVYSA 525 (687)
Q Consensus 485 ~~~lriGy~S~df~--~h~v~~~~~~~~~~~d~~~fev~~y~~ 525 (687)
++..+||++.++.. +.-...++.++-+......+++..+..
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 45 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAP 45 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 34568999988765 433344455554444444577766543
No 361
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.12 E-value=69 Score=25.06 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005626 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (687)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (687)
+++|..+..++|+++.. |+.++|+++|++.+.
T Consensus 19 h~~AF~~Is~AL~~DE~---------------g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL---------------GQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHH---------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHHHHH
No 362
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.97 E-value=1.7e+02 Score=27.00 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEec
Q 005626 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 525 (687)
Q Consensus 485 ~~~lriGy~S~df~~h~v~~~~~~~~~~~d~~~fev~~y~~ 525 (687)
++.-.||++.+++.+.-...++.++-+......+++..+..
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 54 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS 54 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45678999999876554555666665555556688876643
No 363
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=20.75 E-value=1.1e+02 Score=30.81 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHHHHh---CCCcEEEecCCCCCCCcchhhccCCCceEEecccCC
Q 005626 556 KKVAAMVRE---DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600 (687)
Q Consensus 556 ~~~a~~i~~---d~idilvdl~g~t~~~r~~~~a~r~APvq~~~lG~p 600 (687)
.+..+.||+ ++++|.||.++.-.....--++.+.++.-+.|+=-|
T Consensus 227 ~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP 274 (440)
T 3t6c_A 227 PRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDP 274 (440)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEECS
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEECC
Confidence 344555665 678888888765554444445566677666666555
No 364
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=20.57 E-value=4.6e+02 Score=23.39 Aligned_cols=176 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HH---HHHHHHHHcCCHHHHHHHHHHHHh----cCCC-cHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHhCCCC
Q 005626 228 YC---NMGVIYKNRGDLESAIACYERCLA----VSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (687)
Q Consensus 228 ~~---~la~~~~~~g~~~~A~~~~~~al~----~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 299 (687)
+. .++.+..+.++|++...+.+++.+ .++. ..+-...++.+|.+. .|....+...+....+.. ..
T Consensus 6 ~v~~~~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNv------ig~rR~swRiissiEqke-k~ 78 (227)
T 2o8p_A 6 RLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHK------ISDYRTMTSQVLQEQTKQ-LN 78 (227)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS-CS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHh------hcccHHHHHHHHHHHHHH-cC
Q ss_pred HHHHHHHHHHHHhcCCHH--------------------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005626 300 ADAMYNLGVAYGEMLKFD--------------------MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (687)
Q Consensus 300 ~~~~~~la~~~~~~g~~~--------------------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (687)
.+-...+..-|...=.-+ ++.-+|.+.. .+.+..++. ...|+.+.|...|+.
T Consensus 79 ~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMK------GDYyRYlAE--~~~g~~e~a~~aY~~ 150 (227)
T 2o8p_A 79 NDELVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVK------SDISRYKLE--FGLCSLEDSKKIHQD 150 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHH------HHHHHHHHH--TTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHh------hhHHHHHHH--HccccHHHHHHHHHH
Q ss_pred HHhc--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCH
Q 005626 360 ALSI--------KPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSI 418 (687)
Q Consensus 360 al~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~ 418 (687)
|.++ +|-......+.+..|+. +++.++|....++++.. ..++..-....-.++....++
T Consensus 151 A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~~~~~~q~~~d~ 224 (227)
T 2o8p_A 151 AFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQITVYLQGIKDY 224 (227)
T ss_dssp HHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh
No 365
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.16 E-value=1.4e+02 Score=28.63 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=25.7
Q ss_pred CeEEEEecCCcccchH-HHHHHhhccccCCCceEEEEEec
Q 005626 487 PLVIGYVSPDYFTHSV-SYFIEAPLVYHDYQNYKVVVYSA 525 (687)
Q Consensus 487 ~lriGy~S~df~~h~v-~~~~~~~~~~~d~~~fev~~y~~ 525 (687)
+.+||++.++..++|- ..++.++-+......+++..+..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~ 42 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA 42 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 5689999999887664 44455554444444678777643
No 366
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.13 E-value=3.7e+02 Score=22.20 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=24.0
Q ss_pred HHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005626 319 AIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (687)
Q Consensus 319 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (687)
+...|.-+... ....+..|...|..+...|++.+|.+.|+..++..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444444433 23345555555555555566666655555555543
No 367
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.07 E-value=5.6e+02 Score=24.26 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=26.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005626 48 GKDALSYANILRSRNKFVDALALYEIVLEK 77 (687)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (687)
....+..|..+...|++++|+..|+.++..
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345688999999999999999999999875
Done!