Query 005627
Match_columns 687
No_of_seqs 231 out of 1242
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 11:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 6.4E-52 1.4E-56 486.9 30.2 289 369-686 3-333 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 5.9E-51 1.3E-55 484.8 29.7 278 370-686 2-311 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 2.6E-50 5.6E-55 473.5 30.1 287 372-686 1-331 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 1.3E-51 2.9E-56 442.4 4.5 269 382-687 4-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 2.4E-41 5.2E-46 380.1 21.7 246 368-686 4-297 (530)
6 COG0574 PpsA Phosphoenolpyruva 100.0 6E-39 1.3E-43 376.3 17.2 278 372-686 4-320 (740)
7 TIGR01828 pyru_phos_dikin pyru 100.0 5E-37 1.1E-41 362.0 21.1 242 371-686 2-337 (856)
8 PRK09279 pyruvate phosphate di 100.0 3.9E-34 8.5E-39 336.5 23.1 242 370-686 3-343 (879)
9 PRK05849 hypothetical protein; 100.0 6.9E-28 1.5E-32 281.2 18.5 193 381-687 5-216 (783)
10 PRK05849 hypothetical protein; 96.9 0.012 2.5E-07 70.8 14.4 174 157-337 572-780 (783)
11 PRK06241 phosphoenolpyruvate s 96.9 0.034 7.3E-07 68.1 18.0 177 154-339 650-868 (871)
12 PF00391 PEP-utilizers: PEP-ut 96.6 0.0027 5.8E-08 54.9 4.3 69 261-333 8-78 (80)
13 PRK08296 hypothetical protein; 96.5 0.0048 1E-07 71.9 7.1 98 235-339 502-601 (603)
14 PRK05865 hypothetical protein; 95.3 0.051 1.1E-06 66.1 8.8 96 237-341 740-838 (854)
15 PRK05878 pyruvate phosphate di 94.8 0.039 8.5E-07 63.7 5.8 99 232-337 350-451 (530)
16 PRK06354 pyruvate kinase; Prov 94.8 0.038 8.3E-07 64.6 5.6 93 238-337 488-582 (590)
17 TIGR01418 PEP_synth phosphoeno 94.8 0.039 8.5E-07 66.7 5.7 95 233-334 355-451 (782)
18 PRK06464 phosphoenolpyruvate s 94.4 0.051 1.1E-06 65.9 5.5 100 233-339 357-461 (795)
19 PRK09279 pyruvate phosphate di 94.0 0.05 1.1E-06 66.2 4.5 107 232-341 394-511 (879)
20 PRK11377 dihydroxyacetone kina 93.6 0.11 2.4E-06 59.3 6.1 68 261-338 394-470 (473)
21 TIGR01828 pyru_phos_dikin pyru 93.1 0.1 2.2E-06 63.7 5.0 106 233-341 389-505 (856)
22 PRK11177 phosphoenolpyruvate-p 91.9 0.19 4.1E-06 58.8 5.0 77 262-342 153-232 (575)
23 TIGR01417 PTS_I_fam phosphoeno 91.3 0.3 6.6E-06 57.1 5.9 77 262-342 152-231 (565)
24 COG3848 Phosphohistidine swive 91.2 0.46 1E-05 43.1 5.5 98 235-339 5-104 (111)
25 PRK11061 fused phosphoenolpyru 90.6 0.36 7.8E-06 58.3 5.7 76 261-342 319-398 (748)
26 COG1080 PtsA Phosphoenolpyruva 89.8 0.51 1.1E-05 54.6 5.8 71 262-342 154-233 (574)
27 COG3605 PtsP Signal transducti 74.4 2.2 4.7E-05 49.5 2.6 79 258-341 323-405 (756)
28 PRK03955 hypothetical protein; 71.9 13 0.00029 35.4 6.9 95 236-338 6-127 (131)
29 COG0574 PpsA Phosphoenolpyruva 58.3 13 0.00029 45.1 5.1 108 197-313 306-415 (740)
30 PF02786 CPSase_L_D2: Carbamoy 50.3 29 0.00064 35.5 5.4 45 637-686 131-179 (211)
31 PF08664 YcbB: YcbB domain; I 38.9 1.9E+02 0.0041 27.8 8.5 73 104-179 12-84 (134)
32 PF12280 BSMAP: Brain specific 28.3 37 0.0008 34.9 2.0 20 668-687 92-115 (207)
33 TIGR03761 ICE_PFL4669 integrat 27.7 2.8E+02 0.006 28.8 8.2 88 149-240 55-144 (216)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=6.4e-52 Score=486.88 Aligned_cols=289 Identities=24% Similarity=0.387 Sum_probs=240.7
Q ss_pred CCceeeeCCCCC---CCCcCHHhHhHHHHhhhCC-CCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 005627 369 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 444 (687)
Q Consensus 369 ~~~~vl~l~e~~---~~~vG~KAanLa~L~~~~p-~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~ 444 (687)
++++++||+++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+...++.++..
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 456899998874 4679999999999998655 58999999999999999999998 7888888777767666665
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHH--------------hcC-------CCCCCCc-------cHHHHHHHHHH
Q 005627 445 KL----QEIQEAVLQMSAPLSLIYELKNKMR--------------SSG-------MPWPGDE-------GWNLAWRSIKK 492 (687)
Q Consensus 445 ~l----~~ir~~I~~~~lP~el~~~L~~a~r--------------Ssg-------~~~aG~~-------~~e~l~~AIk~ 492 (687)
.+ ++||++|++.++|+++.++|.++++ ||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 43 8999999999999999999988764 442 3789987 37999999999
Q ss_pred HHhcCCChHHHHHHHHcCCCCCCcceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceE
Q 005627 493 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 570 (687)
Q Consensus 493 VWAS~f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f 570 (687)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.++++||++|||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999987 99999
Q ss_pred EEecCCCC--CCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHH
Q 005627 571 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 648 (687)
Q Consensus 571 ~v~k~~~~--~~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~ 648 (687)
+++|.+.. ...++ .+.++.| ...+++. ..| +.|+ ..+++++.. ++.|+|+|++
T Consensus 239 ~v~~~~~~~~~~~i~---~~~i~~K-~~~~~~~--~~~-------~~~~-~~~~~~~~~------~~~~~L~~~~----- 293 (795)
T PRK06464 239 YVHKPTLKAGKPAIV---RRTLGSK-KIKMVYD--DGG-------EHGV-KTVDVPEEE------RNRFSLTDEE----- 293 (795)
T ss_pred EEeccccccccccee---eeecccc-ceeeeec--cCC-------CCce-eEEeCCHHH------hhccCCCHHH-----
Confidence 99987642 11122 4555554 2223322 111 1122 345555432 4679999987
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 005627 649 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 686 (687)
Q Consensus 649 l~~La~lg~~IE~~fG~PQDIEwai~~--g~L~IlQsRP~ 686 (687)
+++|++++++||++||+|||||||+++ |+|||||+||+
T Consensus 294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi 333 (795)
T PRK06464 294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE 333 (795)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence 899999999999999999999999987 99999999997
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=5.9e-51 Score=484.81 Aligned_cols=278 Identities=23% Similarity=0.417 Sum_probs=229.7
Q ss_pred CceeeeCCCCC---CCCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH--
Q 005627 370 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS-- 444 (687)
Q Consensus 370 ~~~vl~l~e~~---~~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~-- 444 (687)
.++++++.++. ...|||||+||++|.+ .||+||+|||||+++|++||+.+ ++.+.+......++..+..
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 46788888764 4679999999999999 69999999999999999999987 4444443333344444443
Q ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHH-----------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcC
Q 005627 445 --KLQEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 497 (687)
Q Consensus 445 --~l~~ir~~I~~~~lP~el~~~L~~a~-----------rSsg-------~~~aG~~-------~~e~l~~AIk~VWAS~ 497 (687)
..++||++|++.++|+++.++|.+++ |||+ .||||++ +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 24799999999999999999999876 4543 3789987 4899999999999999
Q ss_pred CChHHHHHHHHcCCCCCCcceeEEEEeecCCceeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEecCCC
Q 005627 498 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNL 577 (687)
Q Consensus 498 f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f~v~k~~~ 577 (687)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|++++ +
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~ 232 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G 232 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999982 2
Q ss_pred CCCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHH
Q 005627 578 KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGK 657 (687)
Q Consensus 578 ~~~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~La~lg~ 657 (687)
.++ ++.++.|. ..++... ++|+ ..+++++. ..++|+|++++ +++|+++|+
T Consensus 233 ---~i~---~~~i~~k~--~~~~~~~----------~gg~-~~~~~~~~------~~~~~~L~~~~-----~~~L~~l~~ 282 (871)
T PRK06241 233 ---KII---DKTIATKK--LAIYALK----------EGGT-ETKEIEPE------QQKSQTLTDEQ-----ILELARLGR 282 (871)
T ss_pred ---ceE---EEeccccc--eEEEecC----------CCce-EEEECCHH------HhcCCCCCHHH-----HHHHHHHHH
Confidence 232 55555541 2222221 2343 23444432 24678999987 889999999
Q ss_pred HHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 005627 658 IIESLYGYPQDIEGVLKDGLIYVVQARPQ 686 (687)
Q Consensus 658 ~IE~~fG~PQDIEwai~~g~L~IlQsRP~ 686 (687)
+||++||+|||||||+++|+|||||+||+
T Consensus 283 ~ie~~~g~pqDIEw~~~~~~l~ilQaRPi 311 (871)
T PRK06241 283 KIEAHFGCPQDIEWCLADGTFYILQSRPI 311 (871)
T ss_pred HHHHHcCCCcceEEEEECCEEEEEEcCCc
Confidence 99999999999999999999999999997
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=2.6e-50 Score=473.49 Aligned_cols=287 Identities=26% Similarity=0.412 Sum_probs=234.6
Q ss_pred eeeeCCCCC---CCCcCHHhHhHHHHhhhC-CCCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHH--
Q 005627 372 YAVSVEDFT---PDMVGAKSCNIKFLRERV-PSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSK-- 445 (687)
Q Consensus 372 ~vl~l~e~~---~~~vG~KAanLa~L~~~~-p~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~~-- 445 (687)
+++||+++. ...|||||+||++|++.+ ..+++||+|||||+++|++||+++ ++.+.|..+.+.++.++.+.
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467888764 467999999999999732 248999999999999999999988 77777877766666666543
Q ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHH----------------hcC-------CCCCCCc-------cHHHHHHHHHHH
Q 005627 446 --LQEIQEAVLQMSAPLSLIYELKNKMR----------------SSG-------MPWPGDE-------GWNLAWRSIKKV 493 (687)
Q Consensus 446 --l~~ir~~I~~~~lP~el~~~L~~a~r----------------Ssg-------~~~aG~~-------~~e~l~~AIk~V 493 (687)
.++||++|++.++|+++.++|.++++ ||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 37999999999999999999987653 442 3789986 479999999999
Q ss_pred HhcCCChHHHHHHHHcCCCCCCcceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEE
Q 005627 494 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 571 (687)
Q Consensus 494 WAS~f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f~ 571 (687)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++||++|||||+||+|.+ +||+|+
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999987 999999
Q ss_pred EecCCCCC--CccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHH
Q 005627 572 TKKNNLKS--PIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVF 649 (687)
Q Consensus 572 v~k~~~~~--~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l 649 (687)
++|.+... ..++ ++.++.+ ...+++.. .| +.+.....++++.. +++|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i~---~~~~~~k-~~~~~~~~--~g-------~~~~~~~~~~~~~~------~~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAIL---ERTLGSK-KIKMVYDP--DG-------GNVETKIVEVPEEE------RDAFSLSDEE-----I 292 (782)
T ss_pred Eeccccccccccee---eeecccc-ceEEEEcc--CC-------CCcceEEEeCCHHH------hhccCCCHHH-----H
Confidence 99876420 1122 4455544 22233321 11 11112344554432 4678999987 8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEE--CCeEEEEeeccC
Q 005627 650 SKIAETGKIIESLYGYPQDIEGVLK--DGLIYVVQARPQ 686 (687)
Q Consensus 650 ~~La~lg~~IE~~fG~PQDIEwai~--~g~L~IlQsRP~ 686 (687)
++|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 8999999999999999999999999 899999999997
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=1.3e-51 Score=442.43 Aligned_cols=269 Identities=30% Similarity=0.519 Sum_probs=195.7
Q ss_pred CCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCCh----HHHHHHHHHHHcCC
Q 005627 382 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL----SKLQEIQEAVLQMS 457 (687)
Q Consensus 382 ~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~----~~l~~ir~~I~~~~ 457 (687)
..|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+.+.+...+. +.+++||++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 457999999999997 69999999999999999999987 788888887664433222 35689999999999
Q ss_pred CCHHHHHHHHHHH------------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 005627 458 APLSLIYELKNKM------------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 511 (687)
Q Consensus 458 lP~el~~~L~~a~------------rSsg-------~~~aG~~-------~~e~l~~AIk~VWAS~f~~RA~~yR~~~Gi 511 (687)
+|+++.++|..++ |||. .+|||+| +.++|++|||+||||+||+||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 9999999999885 3332 2578876 369999999999999999999999999999
Q ss_pred CCCCcceeEEEEeecCCceeEEEEecCCCCCCCCc-EEEEeecCCccccccccCCCCceEEEecCCCCCCcccccccccc
Q 005627 512 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 590 (687)
Q Consensus 512 ~~~~~~MAVLVQemV~a~~SGVlfT~nP~tg~~~~-i~iea~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~i 590 (687)
+++++.|||+||+||++++|||+||+||.+|++++ ++||+++||||++|+|.. +|++|++++.++. +. .+.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~~---~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---IR---EREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---HH---EEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---hh---hhhc
Confidence 99999999999999999999999999999999998 999999999999999998 9999999875431 11 2333
Q ss_pred ccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 005627 591 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 670 (687)
Q Consensus 591 ~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~La~lg~~IE~~fG~PQDIE 670 (687)
+.+ +..++. . +++|+ ..++++. ++...++|++++ +++|++++.+||++||+|||||
T Consensus 231 ~~k-~~~~~~--~---------~~~~~-~~~~~~~------~~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQK-SVQLVP--D---------EGGGL-EEVDVPE------ERQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp ----HCCCCC--C---------CTTTE-ECCCHHH------HCHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CCc-eEEEEE--c---------CCCce-EEEeCch------hhhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 332 111111 1 23343 2333221 235668888876 8999999999999999999999
Q ss_pred EEEECCeEEEEeeccCC
Q 005627 671 GVLKDGLIYVVQARPQM 687 (687)
Q Consensus 671 wai~~g~L~IlQsRP~v 687 (687)
||+++|+|||||+||+.
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999984
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=2.4e-41 Score=380.10 Aligned_cols=246 Identities=18% Similarity=0.274 Sum_probs=194.8
Q ss_pred cCCceeeeCCCCCC---CCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC---
Q 005627 368 FRGKYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN--- 439 (687)
Q Consensus 368 ~~~~~vl~l~e~~~---~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~--~~~l~~~l~~l~~~~~--- 439 (687)
+..+++++|++... +.+|||++||++|++ .++|||+|||||+.+|++|++.+. .++++++|....+.++
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999998754 589999999999998 699999999999999999998863 2346666554433221
Q ss_pred ---CC---Ch----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHh------cCCCCCCCc-------------cHH
Q 005627 440 ---GG---DL----------SKLQEIQEAVLQMSAPLSLIYELKNKMRS------SGMPWPGDE-------------GWN 484 (687)
Q Consensus 440 ---~~---d~----------~~l~~ir~~I~~~~lP~el~~~L~~a~rS------sg~~~aG~~-------------~~e 484 (687)
.+ ++ ..+..+++.|+++.+|+++.++|.+..-. +..+|+|+| .++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 11 11 11244999999999999999999763211 112344444 258
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceeEEEEeecCCc-----eeEEEEecCCCCCCCCcEEEEeecCCcccc
Q 005627 485 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 559 (687)
Q Consensus 485 ~l~~AIk~VWAS~f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~-----~SGVlfT~nP~tg~~~~i~iea~~GLGE~l 559 (687)
++.+|||.||+|+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|+++.+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999999754 8999999999664 579999999999998888888899999999
Q ss_pred ccccCCCCceEEEecCCCCCCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCc
Q 005627 560 VGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMV 639 (687)
Q Consensus 560 VsG~~G~p~~f~v~k~~~~~~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l 639 (687)
|+|.+ +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99976 6654322110 001
Q ss_pred CCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 005627 640 GDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 686 (687)
Q Consensus 640 ~d~~~r~~~l~~La~lg~~IE~~fG~PQDIEwai~~g~L~IlQsRP~ 686 (687)
+ .+++|++++.+||++||.||||||+|++|+|||||+||.
T Consensus 258 --~-----~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 --A-----VYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred --H-----HHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1 267899999999999999999999999999999999995
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-39 Score=376.27 Aligned_cols=278 Identities=26% Similarity=0.429 Sum_probs=221.6
Q ss_pred eeeeCCCC---CCCCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH--
Q 005627 372 YAVSVEDF---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 446 (687)
Q Consensus 372 ~vl~l~e~---~~~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~~l-- 446 (687)
++.++.+. +..++|||++||++|.+ .|++||+|||||+.+|+.|++.+ ++...+......++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 45566654 45799999999999999 69999999999999999999988 677777665555444433332
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHh---------------cC-------CCCCCCc-------cHHHHHHHHHHHHh
Q 005627 447 --QEIQEAVLQMSAPLSLIYELKNKMRS---------------SG-------MPWPGDE-------GWNLAWRSIKKVWA 495 (687)
Q Consensus 447 --~~ir~~I~~~~lP~el~~~L~~a~rS---------------sg-------~~~aG~~-------~~e~l~~AIk~VWA 495 (687)
..++..|+..++|+++.+++.+++.. |+ .+|+|++ +.++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 68999999999999999999988744 22 2588854 58999999999999
Q ss_pred cCCChHHHHHHHHcCCCCCCcceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEe
Q 005627 496 SKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 573 (687)
Q Consensus 496 S~f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f~v~ 573 (687)
|+||+||+.||.++|++|..+.|||+||+||.++ .|||+||+||.||..+.+.+++.|||||.+|+|.+ +|+.|++.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred cCCCCCCccccccccccccCCCceeEeecCCCCcccccccCCCce-eeeecCCccccccccCCCCCcCCcccchHHHHHH
Q 005627 574 KNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLY-DSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 652 (687)
Q Consensus 574 k~~~~~~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~-~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~L 652 (687)
|++. ... ..+++.. .+++..+. +.+.+ +..+++.. ...+..++|.. +.++
T Consensus 237 k~~~-~~~--~~~~~~~------~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKLI------KLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHHH------HHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHH
Confidence 9653 101 1122211 12221110 11111 12222211 23456777775 7899
Q ss_pred HHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 005627 653 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 686 (687)
Q Consensus 653 a~lg~~IE~~fG~PQDIEwai~~g~L~IlQsRP~ 686 (687)
++++.+||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999998 9999999996
No 7
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=5e-37 Score=362.01 Aligned_cols=242 Identities=19% Similarity=0.284 Sum_probs=188.2
Q ss_pred ceeeeCCCCCC---CCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC------
Q 005627 371 KYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN------ 439 (687)
Q Consensus 371 ~~vl~l~e~~~---~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~--~~~l~~~l~~l~~~~~------ 439 (687)
++++++++.+. +.+|||++||++|++ .++|||+||+||+.+|+.|++++. ..++++.|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 57889888754 589999999999998 599999999999999999999873 2346666554433332
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCCHHHHHHHHH-------HH---H--------------hc---------
Q 005627 440 ---GGDLS----------KLQEIQEAVLQMSAPLSLIYELKN-------KM---R--------------SS--------- 473 (687)
Q Consensus 440 ---~~d~~----------~l~~ir~~I~~~~lP~el~~~L~~-------a~---r--------------Ss--------- 473 (687)
.+++. ....+++.|+++.+|++++++|.+ ++ | ++
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 11221 124899999999999999999976 32 2 11
Q ss_pred ----CC------C----------CCCCc-----------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceeEEE
Q 005627 474 ----GM------P----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 522 (687)
Q Consensus 474 ----g~------~----------~aG~~-----------~~e~l~~AIk~VWAS~f~~RA~~yR~~~Gi~~~~~~MAVLV 522 (687)
|. + |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 11 1 23322 378999999999999999999999999999996 8999999
Q ss_pred EeecCCc-----eeEEEEecCCCCCCCCcEEEEee-cCCccccccccCCCCceEEEecCCCCCCccccccccccccCCCc
Q 005627 523 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKP 596 (687)
Q Consensus 523 QemV~a~-----~SGVlfT~nP~tg~~~~i~iea~-~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~i~~~~~~ 596 (687)
|+||.++ .|||+||+||.||.+. +++++. .|+||.+|+|.+ +|+.|...+
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~~---------------------- 293 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAME---------------------- 293 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHhh----------------------
Confidence 9999664 7999999999999764 545543 479999999876 554321100
Q ss_pred eeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECC
Q 005627 597 SIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDG 676 (687)
Q Consensus 597 ~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~La~lg~~IE~~fG~PQDIEwai~~g 676 (687)
-+.++ .+++|++++..||++||.||||||++++|
T Consensus 294 -----------------------------------------~~~p~-----~~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 294 -----------------------------------------ADMPD-----VYKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred -----------------------------------------hcChH-----HHHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 00112 27899999999999999999999999999
Q ss_pred eEEEEeeccC
Q 005627 677 LIYVVQARPQ 686 (687)
Q Consensus 677 ~L~IlQsRP~ 686 (687)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=3.9e-34 Score=336.52 Aligned_cols=242 Identities=24% Similarity=0.387 Sum_probs=182.4
Q ss_pred CceeeeCCC----C---CCCCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhcc--chhHHHH----HHHHHh
Q 005627 370 GKYAVSVED----F---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANK----ISRLYK 436 (687)
Q Consensus 370 ~~~vl~l~e----~---~~~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~--~~~l~~~----l~~l~~ 436 (687)
.++++++++ . ..+++|||++||++|.+ .++|||+||+||+.+|++|++.+. .+++++. |..|..
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 367888844 2 24799999999999998 699999999999999999998762 3445444 444443
Q ss_pred hhCC--CChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HHh----c-----C--------
Q 005627 437 FING--GDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MRS----S-----G-------- 474 (687)
Q Consensus 437 ~~~~--~d~~-------------~l~~ir~~I~~~~lP~el~~~L~~a----------~rS----s-----g-------- 474 (687)
..+. ++.+ ....+.+.|+++-+.++.+..|.+. ||. . |
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 3321 2211 1245677788888888777777642 111 0 1
Q ss_pred --------------------------------------CCCCCCccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCc
Q 005627 475 --------------------------------------MPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNL 516 (687)
Q Consensus 475 --------------------------------------~~~aG~~~~e~l~~AIk~VWAS~f~~RA~~yR~~~Gi~~~~~ 516 (687)
.+|| ++.+++++.||+.||+|+||+||+.||+.+|++++ .
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp-~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~ 237 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFP-QDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-W 237 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-c
Confidence 1111 12389999999999999999999999999999986 8
Q ss_pred ceeEEEEeecCCc-----eeEEEEecCCCCCCCCcEEEEe-ecCCccccccccCCCCceEEEecCCCCCCcccccccccc
Q 005627 517 CMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEI-VKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 590 (687)
Q Consensus 517 ~MAVLVQemV~a~-----~SGVlfT~nP~tg~~~~i~iea-~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~i 590 (687)
.|||+||+||.++ .|||+||+||.||+++ ++++. +.|+||.+|+|.+ +|+.|. .
T Consensus 238 g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~-~~Ge~l~~aqGedVVsG~~-tp~~~~---------------~--- 297 (879)
T PRK09279 238 GTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKK-LYGEFLINAQGEDVVAGIR-TPQPIP---------------S--- 297 (879)
T ss_pred CceEEEEeccccCCCCCcceEEEEeCCCCCCCCc-eeEEEecCCCChhhhcCcc-CcchhH---------------H---
Confidence 9999999999766 6999999999999864 45555 5799999999976 554330 0
Q ss_pred ccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 005627 591 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 670 (687)
Q Consensus 591 ~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~La~lg~~IE~~fG~PQDIE 670 (687)
+ + .. .++ .+++|++++..||++||.|||||
T Consensus 298 ------------------l-----------------~---------~~-~p~-----~~~~L~~~~~~LE~~f~~pqDIE 327 (879)
T PRK09279 298 ------------------L-----------------E---------EA-MPE-----VYAELVDIAKKLEKHYRDMQDIE 327 (879)
T ss_pred ------------------H-----------------h---------hc-ChH-----HHHHHHHHHHHHHHHhCCCeeeE
Confidence 0 0 00 012 27899999999999999999999
Q ss_pred EEEECCeEEEEeeccC
Q 005627 671 GVLKDGLIYVVQARPQ 686 (687)
Q Consensus 671 wai~~g~L~IlQsRP~ 686 (687)
|+|++|+|||||+||.
T Consensus 328 ftie~g~L~iLQtRp~ 343 (879)
T PRK09279 328 FTIERGKLYMLQTRNG 343 (879)
T ss_pred EEEECCEEEEEEeCCc
Confidence 9999999999999994
No 9
>PRK05849 hypothetical protein; Provisional
Probab=99.95 E-value=6.9e-28 Score=281.16 Aligned_cols=193 Identities=20% Similarity=0.163 Sum_probs=141.9
Q ss_pred CCCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHHHHHHHHHHcCCCCH
Q 005627 381 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPL 460 (687)
Q Consensus 381 ~~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~~l~~ir~~I~~~~lP~ 460 (687)
.-.+|+||++|+.|++++ .+++||+++++|...+.+- ....++ .|+..+ +.
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~~--------~~~~~~---------------~i~~~~-----~~ 55 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLSN--------KDKVLE---------------EIQNSF-----PA 55 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhccC--------HHHHHH---------------HHHHhc-----CC
Confidence 357899999999999976 5899999999998644321 111111 122111 00
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCcc---------HHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceeEEEEe
Q 005627 461 SLIYELKNKMRSSG-------MPWPGDEG---------WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQE 524 (687)
Q Consensus 461 el~~~L~~a~rSsg-------~~~aG~~~---------~e~l~~AIk~VWAS~f~~RA~~yR~~~Gi~~~~~~MAVLVQe 524 (687)
-.-++|||+ .||||+|. .+++..||++||||+++ ++ .|||+||+
T Consensus 56 -----~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 56 -----DKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred -----CeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 023467774 47999872 56999999999999776 22 38999999
Q ss_pred ecC-CceeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEecCCCCCCccccccccccccCCCceeEeecC
Q 005627 525 TIC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSD 603 (687)
Q Consensus 525 mV~-a~~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~i~~~~~~~~i~~~d 603 (687)
||. +..|||+||+||.+|++..+....++|+||.||+|.. +|..+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998665544445899999999976 55544332110
Q ss_pred CCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCC-CeeEEEEE-ECCeEEEE
Q 005627 604 SNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY-PQDIEGVL-KDGLIYVV 681 (687)
Q Consensus 604 sngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~La~lg~~IE~~fG~-PQDIEwai-~~g~L~Il 681 (687)
.++++++. +++|+++++.||++||+ |||||||+ .+|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01223333 78999999999999986 99999999 58999999
Q ss_pred eeccCC
Q 005627 682 QARPQM 687 (687)
Q Consensus 682 QsRP~v 687 (687)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999973
No 10
>PRK05849 hypothetical protein; Provisional
Probab=96.92 E-value=0.012 Score=70.78 Aligned_cols=174 Identities=11% Similarity=0.065 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhhCCcchhhcchhHHHHhhhhhHH----HHHHHHhhhHHH
Q 005627 157 LQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPVL 226 (687)
Q Consensus 157 l~~ka~ldr~r~~~~~------~~~~~~~~~~~~a~~lg~~~g~~~~~~~~F~e~~iR~~~~f~----ls~l~~~l~~~~ 226 (687)
..++..++++|..++. ........+-.....+|..+|+++.-+--.+-++|++-..-. ....+..+-..=
T Consensus 572 ~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~r 651 (783)
T PRK05849 572 IDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKRN 651 (783)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHHH
Confidence 3356667777776664 233334444455667899999977666555666666422111 011221111111
Q ss_pred HHH-------------hc----------CCCceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCcc-cc-CCC
Q 005627 227 RKV-------------AN----------LGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEE-EI-PVG 281 (687)
Q Consensus 227 r~~-------------a~----------~~~wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~E-eI-p~~ 281 (687)
|+. .+ .+.=..++||.+.|.+++++.-.. ......||++..+|=.= -+ ..+
T Consensus 652 k~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~~----~~~~G~Ilv~~~tdPg~~~lf~~~ 727 (783)
T PRK05849 652 KQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDND----DDLEGKIVCIENADPGYDWLFTKG 727 (783)
T ss_pred HHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChhh----cCCCCCEEEeCCCCccchHHHhhh
Confidence 110 00 000024899999999999875421 11234699998766100 00 126
Q ss_pred ceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEEcCCce
Q 005627 282 VVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 337 (687)
Q Consensus 282 V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~ 337 (687)
++||||..-. ..||.+++||.+|||-+.--.....+.+ .+|+.|.+....+.+
T Consensus 728 i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 728 IAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred eeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 9999998876 8999999999999999764332112222 368888887665444
No 11
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=96.86 E-value=0.034 Score=68.11 Aligned_cols=177 Identities=16% Similarity=0.083 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhh---CC--cchhhcchhHHHHhhhh---hHHHHHHH
Q 005627 154 QWALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLL---GV--EKYVIDNFTEELVRAQS---EAVLSILI 219 (687)
Q Consensus 154 ~wal~~ka~ldr~r~~~~~------~~~~~~~~~~~~a~~lg~~~---g~--~~~~~~~F~e~~iR~~~---~f~ls~l~ 219 (687)
.....++..+.++|..+.. +.......+-.....+|+.+ |+ ++.-+=-++-++|++-. ...-.+..
T Consensus 650 ~~~~~~~~~l~~ar~~~~~RE~~k~~~~~~~~~~R~~~~~~g~~l~~~G~L~~~~Dif~L~~~El~~~~~g~~~~~~~i~ 729 (871)
T PRK06241 650 QKAKETKRMISRLRNFIGYREYPKYGRIRRYGIYKQALLKEAEQLVQAGVLAEPEDIFYLTFEELREVVRTNKLDYELIA 729 (871)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCChhheeeecHHHHHHHHcCCcccHHHHH
Confidence 3456678888888877754 23344555556777888877 88 44444445555555321 11011221
Q ss_pred HhhhHHHHHH--------h--c----------CCC---c--eeeeceeEEEEEEEecccccccccccCCCeEEEEecCCC
Q 005627 220 NRFEPVLRKV--------A--N----------LGC---W--QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITG 274 (687)
Q Consensus 220 ~~l~~~~r~~--------a--~----------~~~---w--q~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G 274 (687)
.+=..+-+.. . + ..+ + ..+++|.+.|.++++....+. ....+.||++...++
T Consensus 730 ~rk~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p 806 (871)
T PRK06241 730 KRKEEYELYEKLTPPRVMTSDGEIITGKYKRENLPAGALIGLPVSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDP 806 (871)
T ss_pred HHHHHHHHhhcCCCCceecCCCccccccccccCCCCCceeEeecCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCH
Confidence 1111111100 0 0 011 1 237889999999998776553 234567999987765
Q ss_pred ccccC--CCceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhc-CCCeEEEEEcCCceEE
Q 005627 275 EEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLK-EGKAVSIRLKSTNLII 339 (687)
Q Consensus 275 ~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~-~Gk~V~l~vs~~~~~~ 339 (687)
. ..| ..+.||||..-+ .+||.+|.||+.|||-++.-.. ..+.+ +|..|.+....+.+.+
T Consensus 807 ~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~----~~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 807 G-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVEN----ATKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEcccc----HHhhcCCCCEEEEECCCCEEEE
Confidence 2 344 279999988766 9999999999999998774432 23333 7999998877655543
No 12
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=96.57 E-value=0.0027 Score=54.86 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=47.8
Q ss_pred cCCCeEEEEecCCCcccc-C-CCceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEEc
Q 005627 261 YRRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 333 (687)
Q Consensus 261 ~~~p~Ill~~~~~G~EeI-p-~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs 333 (687)
..+++||+++..+-.+-. . .++.||||..-. ++||.++.||++|||.+..-.. ... .-.+|.+|.+..+
T Consensus 8 ~~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~--~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 8 LPEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATE--AIKDGDWVTLDGN 78 (80)
T ss_dssp TTSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHH--HSCTTEEEEEETT
T ss_pred CCCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhh--ccCCCCEEEEECC
Confidence 356789999876654433 1 379999998876 8999999999999999876652 122 2236888887543
No 13
>PRK08296 hypothetical protein; Provisional
Probab=96.51 E-value=0.0048 Score=71.92 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=70.1
Q ss_pred ceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCceeEEec
Q 005627 235 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 312 (687)
Q Consensus 235 wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~ 312 (687)
=..+|||.+.|.+++|....+.. ....+.|||+...+- +.+| ..+.||||..-. .+||.++.||+.|||-+.+-
T Consensus 502 G~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP-~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv 577 (603)
T PRK08296 502 GFAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSP-SWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGT 577 (603)
T ss_pred eeecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCH-HHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcC
Confidence 34678899999999998766543 235678999875442 2233 269999998765 89999999999999987655
Q ss_pred chHHHHHhHhcCCCeEEEEEcCCceEE
Q 005627 313 DQNILRNLRLKEGKAVSIRLKSTNLII 339 (687)
Q Consensus 313 d~~~~~~l~~~~Gk~V~l~vs~~~~~~ 339 (687)
... .. +-.+|..|.+..+.+.+.+
T Consensus 578 ~~a-t~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 578 GNA-TK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred ccH-hh--hcCCCCEEEEECCCCEEEE
Confidence 421 11 1247999998877655543
No 14
>PRK05865 hypothetical protein; Provisional
Probab=95.32 E-value=0.051 Score=66.09 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=68.0
Q ss_pred eeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCceeEEecch
Q 005627 237 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 314 (687)
Q Consensus 237 ~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~ 314 (687)
.+|||.+.|+++++.. .+ ......+.||++...+- ..+| ..+.||||..-. .+||.++-||+.|||-+.+-..
T Consensus 740 ~~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp-~~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~ 814 (854)
T PRK05865 740 GVCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDV-GYTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG 814 (854)
T ss_pred eccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCH-HHHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc
Confidence 4677889999999872 22 12346678999875331 1122 269999998766 8999999999999999876542
Q ss_pred HHHHHhHh-cCCCeEEEEEcCCceEEee
Q 005627 315 NILRNLRL-KEGKAVSIRLKSTNLIISD 341 (687)
Q Consensus 315 ~~~~~l~~-~~Gk~V~l~vs~~~~~~~~ 341 (687)
..+. .+|+.|.+..+.+.+.+-+
T Consensus 815 ----at~~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 815 ----ATRFLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred ----HhhcCCCCCEEEEECCCcEEEEec
Confidence 1222 3899999988876666533
No 15
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=94.85 E-value=0.039 Score=63.71 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCceeeeceeEEEEEEE-ecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCcee
Q 005627 232 LGCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCF 308 (687)
Q Consensus 232 ~~~wq~ispg~a~G~l~~-v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~ 308 (687)
+..=..++||.+.|+++. .++..+.. ...++.||++...+ -++++ ..+.||||..-. ..||.++.||++|||-
T Consensus 350 l~~G~~as~G~a~G~V~~~~~~~~~~~--~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~ 425 (530)
T PRK05878 350 LAKGLPACPGVVSGTAYTDVDEALDAA--DRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVA 425 (530)
T ss_pred eccCeeccCceEEEEEEECHHHHHHHh--hccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCE
Confidence 456678999999999864 22222211 22455788886433 22233 269999998776 8999999999999999
Q ss_pred EEecchHHHHHhHhcCCCeEEEEEcCCce
Q 005627 309 ATCFDQNILRNLRLKEGKAVSIRLKSTNL 337 (687)
Q Consensus 309 a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~ 337 (687)
+..-... ...+ .+|..|.+......+
T Consensus 426 VvG~~~~-~~~~--~~G~~VtvDg~~G~V 451 (530)
T PRK05878 426 VVGCGAG-VAAA--LAGKEITVDGYEGEV 451 (530)
T ss_pred EEcccch-hhcc--CCCCEEEEECCCCEE
Confidence 8754322 2222 469999887765433
No 16
>PRK06354 pyruvate kinase; Provisional
Probab=94.80 E-value=0.038 Score=64.58 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=66.0
Q ss_pred eeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCceeEEecchH
Q 005627 238 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 315 (687)
Q Consensus 238 ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~ 315 (687)
.+||.+.|.++++....+. ..+..+.||+++..+- +.+| ..+.||||..-. ..||.++.||.+|||-+.+-...
T Consensus 488 as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~~~ 563 (590)
T PRK06354 488 IGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVKNA 563 (590)
T ss_pred cccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEeccch
Confidence 3677788888887765543 3456778999986554 3344 279999998766 89999999999999998765422
Q ss_pred HHHHhHhcCCCeEEEEEcCCce
Q 005627 316 ILRNLRLKEGKAVSIRLKSTNL 337 (687)
Q Consensus 316 ~~~~l~~~~Gk~V~l~vs~~~~ 337 (687)
.. .-.+|.+|.+....+.+
T Consensus 564 -~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 564 -TS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred -hh--ccCCCCEEEEECCCCEE
Confidence 11 12469998887765433
No 17
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=94.76 E-value=0.039 Score=66.73 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=69.5
Q ss_pred CCceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCceeEE
Q 005627 233 GCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT 310 (687)
Q Consensus 233 ~~wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~ 310 (687)
..=..++||.+.|.++++....+.. ....+.||++...+- +++| ..+.||||..-. ..||.++.||++|||-+.
T Consensus 355 ~~G~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavv 430 (782)
T TIGR01418 355 VTGRAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVV 430 (782)
T ss_pred ecCcccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEE
Confidence 4456789999999999998877653 345677999875442 2233 279999998776 899999999999999866
Q ss_pred ecchHHHHHhHhcCCCeEEEEEcC
Q 005627 311 CFDQNILRNLRLKEGKAVSIRLKS 334 (687)
Q Consensus 311 ~~d~~~~~~l~~~~Gk~V~l~vs~ 334 (687)
.-. +....+ .+|..|.+....
T Consensus 431 g~~-~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 431 GTG-DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred ccc-chhhcc--cCCCEEEEEcCC
Confidence 432 222222 369999988876
No 18
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=94.38 E-value=0.051 Score=65.85 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCceeEE
Q 005627 233 GCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT 310 (687)
Q Consensus 233 ~~wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~ 310 (687)
..=..++||.++|.++++....+.. ....+.||++...+= ++++ ..+.||||..-. ..||.++.||++|||-+.
T Consensus 357 ~~G~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavv 432 (795)
T PRK06464 357 VEGRAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVV 432 (795)
T ss_pred eeCcccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEE
Confidence 3455778899999999998766654 235667888874332 2233 279999998776 899999999999999754
Q ss_pred ecchHHHHHhHhcCCCeEEE---EEcCCceEE
Q 005627 311 CFDQNILRNLRLKEGKAVSI---RLKSTNLII 339 (687)
Q Consensus 311 ~~d~~~~~~l~~~~Gk~V~l---~vs~~~~~~ 339 (687)
--. +.... -.+|..|.+ ....+.+..
T Consensus 433 g~~-~~~~~--l~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 433 GTG-NATEV--LKDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred ccC-cccce--ecCCCEEEEEeccCCCcEEEe
Confidence 221 12221 136999988 544433333
No 19
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=94.05 E-value=0.05 Score=66.22 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=67.3
Q ss_pred CCCceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccCC--CceEEecCCCCCcchhhhhhhccCCceeE
Q 005627 232 LGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFA 309 (687)
Q Consensus 232 ~~~wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp~--~V~gVit~~~~~~LSHv~vrARn~gVp~a 309 (687)
+..=...|||.++|++++...-..-. ....++.||+... .--++++- .+.||||..-. ..||.+|.||++|+|-+
T Consensus 394 l~~G~~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~e-t~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~V 470 (879)
T PRK09279 394 IAKGLPASPGAATGKIVFTADEAEAL-AARGEKVILVRPE-TSPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCV 470 (879)
T ss_pred ccCCcccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECC-CCHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEE
Confidence 34456789999999997743222111 1124556777653 22333432 58999998776 89999999999999996
Q ss_pred EecchHHHH---------HhHhcCCCeEEEEEcCCceEEee
Q 005627 310 TCFDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 341 (687)
Q Consensus 310 ~~~d~~~~~---------~l~~~~Gk~V~l~vs~~~~~~~~ 341 (687)
+.-..-.++ .-.-.+|.+|.+..+.+.+...+
T Consensus 471 vG~~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~ 511 (879)
T PRK09279 471 VGAGALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGE 511 (879)
T ss_pred eccCcceEecccCEEEECCEEecCCCEEEEECCCCEEEECC
Confidence 643311111 01124688888887765555544
No 20
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=93.62 E-value=0.11 Score=59.26 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=48.8
Q ss_pred cCCCeEEEEecCCCccccCC---------CceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEE
Q 005627 261 YRRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIR 331 (687)
Q Consensus 261 ~~~p~Ill~~~~~G~EeIp~---------~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~ 331 (687)
.+.|.||+++ |+.| +|.||+|..-. ..||.+++||.+|||-++--.. ... .-.+|..|-+.
T Consensus 394 ~~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~~-~~~--~~~~G~~vilD 463 (473)
T PRK11377 394 FNSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQGE-KLY--AIQPEETLTLD 463 (473)
T ss_pred CCCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcchh-hHh--hccCCCEEEEE
Confidence 3678899986 5554 69999998776 8999999999999998653221 122 22468888887
Q ss_pred EcCCceE
Q 005627 332 LKSTNLI 338 (687)
Q Consensus 332 vs~~~~~ 338 (687)
-..+.+.
T Consensus 464 G~~G~v~ 470 (473)
T PRK11377 464 VKTQRLN 470 (473)
T ss_pred CCCCEEE
Confidence 7654443
No 21
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=93.14 E-value=0.1 Score=63.72 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=67.6
Q ss_pred CCceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccC--CCceEEecCCCCCcchhhhhhhccCCceeEE
Q 005627 233 GCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT 310 (687)
Q Consensus 233 ~~wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp--~~V~gVit~~~~~~LSHv~vrARn~gVp~a~ 310 (687)
..=...|||.++|++++..+-.... ....++.||+....+ -++++ ..+.||||..-. ..||.++.||++|||-++
T Consensus 389 ~~G~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~Vv 465 (856)
T TIGR01828 389 AKGLPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVS 465 (856)
T ss_pred ecCcccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEE
Confidence 3455779999999997763322111 123456788876433 22233 268999998876 899999999999999976
Q ss_pred ecchHHHHH---------hHhcCCCeEEEEEcCCceEEee
Q 005627 311 CFDQNILRN---------LRLKEGKAVSIRLKSTNLIISD 341 (687)
Q Consensus 311 ~~d~~~~~~---------l~~~~Gk~V~l~vs~~~~~~~~ 341 (687)
.-..-.++. -.-.+|..|.+..+.+.+...+
T Consensus 466 G~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~ 505 (856)
T TIGR01828 466 GCEELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGE 505 (856)
T ss_pred cccccccccccceeeeCCeEecCCCEEEEECCCCEEEECC
Confidence 443221110 1224688888877765555443
No 22
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=91.88 E-value=0.19 Score=58.81 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCCeEEEEecCCCcc--ccC-CCceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEEcCCceE
Q 005627 262 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 338 (687)
Q Consensus 262 ~~p~Ill~~~~~G~E--eIp-~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 338 (687)
..|.||+++..+-.+ .++ .++.||||..-. ..||.++.||++|||-+..-. +.... -.+|+.|.+....+.+.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEEE
Confidence 557788877544322 111 369999998776 899999999999999765443 22222 23699999888776666
Q ss_pred Eeec
Q 005627 339 ISDI 342 (687)
Q Consensus 339 ~~~~ 342 (687)
+.+.
T Consensus 229 ~~P~ 232 (575)
T PRK11177 229 VNPT 232 (575)
T ss_pred ECCC
Confidence 6654
No 23
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=91.34 E-value=0.3 Score=57.10 Aligned_cols=77 Identities=22% Similarity=0.173 Sum_probs=52.2
Q ss_pred CCCeEEEEecCCCcccc---CCCceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEEcCCceE
Q 005627 262 RRPTIIIASRITGEEEI---PVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 338 (687)
Q Consensus 262 ~~p~Ill~~~~~G~EeI---p~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 338 (687)
..|.||+++..+=.+=+ +.++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.+.
T Consensus 152 ~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v~ 227 (565)
T TIGR01417 152 QDEVILVAEDLTPSETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIVI 227 (565)
T ss_pred CCCeEEEecCCCHHHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEEE
Confidence 55778888643211111 1269999998765 899999999999999876543 22222 23799999888776666
Q ss_pred Eeec
Q 005627 339 ISDI 342 (687)
Q Consensus 339 ~~~~ 342 (687)
+.+.
T Consensus 228 ~~P~ 231 (565)
T TIGR01417 228 FNPS 231 (565)
T ss_pred eCCC
Confidence 6553
No 24
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=91.19 E-value=0.46 Score=43.08 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=69.0
Q ss_pred ceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCccccCC--CceEEecCCCCCcchhhhhhhccCCceeEEec
Q 005627 235 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 312 (687)
Q Consensus 235 wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~EeIp~--~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~ 312 (687)
=|.|-.|.+.|+.++-+.-.+...+ +.+-.||++...| .|-+|. -..||||.+.. .-||-+|-+++.|||.+.-.
T Consensus 5 GqgIg~gsv~G~~~vA~~~~~~~~k-~~~g~iLv~~std-~d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 5 GQGIGRGSVSGRAVVADSGKEAEQK-FEEGVILVTPSTD-ADFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred ceeecccceeeEEEEccCHhHhhCC-cccCcEEEeccCC-hhhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 4778888999999888876664322 3445688876544 456674 68999999988 99999999999999998755
Q ss_pred chHHHHHhHhcCCCeEEEEEcCCceEE
Q 005627 313 DQNILRNLRLKEGKAVSIRLKSTNLII 339 (687)
Q Consensus 313 d~~~~~~l~~~~Gk~V~l~vs~~~~~~ 339 (687)
+.. .+.+ .+|..|.+..+- ++.+
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEE
Confidence 522 1111 378877766543 4443
No 25
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=90.59 E-value=0.36 Score=58.33 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=52.3
Q ss_pred cCCCeEEEEecCCCccccC----CCceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEEcCCc
Q 005627 261 YRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 336 (687)
Q Consensus 261 ~~~p~Ill~~~~~G~EeIp----~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~ 336 (687)
...|.||+++..+-.+ ++ .+|+||+|..-. ..||.++.||++|||.+.--+ .... ...|..|.+.-..+.
T Consensus 319 ~~~~~Ilva~~l~ps~-~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~ 392 (748)
T PRK11061 319 WPERFILVADELTATL-LAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGE 392 (748)
T ss_pred CCCCEEEEECCCCHHH-HHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCE
Confidence 3567788887432111 11 169999998876 899999999999999765332 1222 235999988887766
Q ss_pred eEEeec
Q 005627 337 LIISDI 342 (687)
Q Consensus 337 ~~~~~~ 342 (687)
+.+.+.
T Consensus 393 v~vnP~ 398 (748)
T PRK11061 393 LLVDPE 398 (748)
T ss_pred EEeCCC
Confidence 667664
No 26
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=89.85 E-value=0.51 Score=54.56 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=55.2
Q ss_pred CCCeEEEEecCCCccccCC---------CceEEecCCCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEE
Q 005627 262 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 332 (687)
Q Consensus 262 ~~p~Ill~~~~~G~EeIp~---------~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~v 332 (687)
++|+|++++ |+.| .|.|++|..-+ ..||.++.||..+||-+.-.... ...+ .+|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v--~~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAV--KDGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhcc--cCCCEEEEEC
Confidence 567888886 5654 69999998776 88999999999999998866644 2222 3899999888
Q ss_pred cCCceEEeec
Q 005627 333 KSTNLIISDI 342 (687)
Q Consensus 333 s~~~~~~~~~ 342 (687)
..+.+.+.+.
T Consensus 224 ~~G~vi~nP~ 233 (574)
T COG1080 224 INGEVIVNPD 233 (574)
T ss_pred CCCeEEECcC
Confidence 8877777664
No 27
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=74.36 E-value=2.2 Score=49.54 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=52.9
Q ss_pred ccccCCCeEEEEecCCCcc--ccC-CCceEEecCCCCCcchhhhhhhccCCceeEEe-cchHHHHHhHhcCCCeEEEEEc
Q 005627 258 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 333 (687)
Q Consensus 258 ~~~~~~p~Ill~~~~~G~E--eIp-~~V~gVit~~~~~~LSHv~vrARn~gVp~a~~-~d~~~~~~l~~~~Gk~V~l~vs 333 (687)
...|.++.|++++..+-.| |.| ...+||+..+-. .-||+++.||.+|||.+-- .+-. .+..+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i~----~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGIV----PSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCcc----hhhhcCCcEEEECC
Confidence 4567888999998554433 344 269999987765 7899999999999999763 3311 23356666555444
Q ss_pred CCceEEee
Q 005627 334 STNLIISD 341 (687)
Q Consensus 334 ~~~~~~~~ 341 (687)
.+.+.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 44444544
No 28
>PRK03955 hypothetical protein; Reviewed
Probab=71.85 E-value=13 Score=35.35 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=60.6
Q ss_pred eeeeceeEEEEEEEeccccc----cc-------ccccC------CCeEEEEecCCCcc--------ccCC--CceEEecC
Q 005627 236 QVISPVEVCGFITSVNELIT----LQ-------NKVYR------RPTIIIASRITGEE--------EIPV--GVVAVLTP 288 (687)
Q Consensus 236 q~ispg~a~G~l~~v~~l~~----~~-------~~~~~------~p~Ill~~~~~G~E--------eIp~--~V~gVit~ 288 (687)
..+++|.+.|++.+.++--. +. +..-+ .-+|+++....|-- -+-. .=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 57899999999888763221 11 11000 23577776655541 1111 13678887
Q ss_pred CCCCcchhhhhhhccCCceeEEecchHHHHHhHhcCCCeEEEEEcCCceE
Q 005627 289 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 338 (687)
Q Consensus 289 ~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 338 (687)
+.-+.+||=++-| +||.+...+ .+.| .+|.+|++..+...+.
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l--~~G~~V~Vdg~~G~V~ 127 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKL--KDGDRVVVDGDEGEVE 127 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceec--CCCCEEEEeCCCCEEE
Confidence 7777999999999 999998666 3322 2899999875544443
No 29
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=58.32 E-value=13 Score=45.12 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=69.9
Q ss_pred hhhcchhHHHHhhhhhHHHHHHHHhhhHHHHHHhcCCCceeeeceeEEEEEEEecccccccccccCCCeEEEEecCCCcc
Q 005627 197 YVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEE 276 (687)
Q Consensus 197 ~~~~~F~e~~iR~~~~f~ls~l~~~l~~~~r~~a~~~~wq~ispg~a~G~l~~v~~l~~~~~~~~~~p~Ill~~~~~G~E 276 (687)
|.++- .+..+|+.+.-..+.+-...++ ...=..++. .+||.+.|.++++....+. ......+||+....+ -+
T Consensus 306 w~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~-pd 377 (740)
T COG0574 306 WAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTD-PD 377 (740)
T ss_pred hhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCC-HH
Confidence 44443 4557777777767766666666 111112233 8999999999888766654 222345677776433 33
Q ss_pred ccCC--CceEEecCCCCCcchhhhhhhccCCceeEEecc
Q 005627 277 EIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 313 (687)
Q Consensus 277 eIp~--~V~gVit~~~~~~LSHv~vrARn~gVp~a~~~d 313 (687)
.+|. .-.||+|..-. ..||-++.||.+|+|-+.--.
T Consensus 378 ~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~ 415 (740)
T COG0574 378 WVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTG 415 (740)
T ss_pred HhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCc
Confidence 3442 46677776666 999999999999999966444
No 30
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=50.28 E-value=29 Score=35.49 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=37.9
Q ss_pred CCcCCcccchHHHHHHHHHHHHHHHhcC--CCeeEEEEEE--CCeEEEEeeccC
Q 005627 637 PMVGDKSFQTSVFSKIAETGKIIESLYG--YPQDIEGVLK--DGLIYVVQARPQ 686 (687)
Q Consensus 637 ~~l~d~~~r~~~l~~La~lg~~IE~~fG--~PQDIEwai~--~g~L~IlQsRP~ 686 (687)
+.|+++. .++|.+.+.+|-+.+| .+--|||+++ ++++|++...|-
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 4566664 7899999999999987 6999999999 799999998874
No 31
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=38.88 E-value=1.9e+02 Score=27.81 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=46.0
Q ss_pred cccCCCchhhHHHHHHhHhcccccCCCcHHHHHHHHHHHhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005627 104 DLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQK 179 (687)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~n~~ls~~~~~~l~~~l~~w~~~~~~~~~~~~~wal~~ka~ldr~r~~~~~~~~~~~~ 179 (687)
-.+..+..|++.++....++=.-....+..|-..+..-... ....+.+=+...||+-+|.||++.--+..+.+
T Consensus 12 I~gE~Gs~Dil~Ii~~l~~~~~~~~~~~~~Lk~~f~~~~~~---~~~~~~~~~~e~Ka~EQRIRRai~~al~nlAs 84 (134)
T PF08664_consen 12 IIGEAGSKDILKIIEYLIEQEKSFSQNFPSLKEIFEELAQK---KLASDEEIEKEKKAIEQRIRRAIKQALTNLAS 84 (134)
T ss_pred cccccCHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHh---hccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888999999888775433322233332222211111 11344556788999999999999888887765
No 32
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=28.25 E-value=37 Score=34.89 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=16.5
Q ss_pred eEEEEE----ECCeEEEEeeccCC
Q 005627 668 DIEGVL----KDGLIYVVQARPQM 687 (687)
Q Consensus 668 DIEwai----~~g~L~IlQsRP~v 687 (687)
--=|++ +||+++|+|++|.|
T Consensus 92 sStWTfYLQaDdGKvVVfQsqp~i 115 (207)
T PF12280_consen 92 SSTWTFYLQADDGKVVVFQSQPEI 115 (207)
T ss_pred cceeEEEEEcCCCCEEEEeccccc
Confidence 446888 48999999999975
No 33
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=27.65 E-value=2.8e+02 Score=28.80 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=71.9
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHhhhCCcchhhcchhHHHHhhhhhHHHHHHHHhhhHHH
Q 005627 149 RTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQ--PSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVL 226 (687)
Q Consensus 149 ~~~~~~wal~~ka~ldr~r~~~~~~~~~~~~~~~--~~a~~lg~~~g~~~~~~~~F~e~~iR~~~~f~ls~l~~~l~~~~ 226 (687)
.++.+.|=+++...+..++..+..-.+.+.+.+. |..-.++....++|..+.+| +++-..|++..|+...|-.+
T Consensus 55 dPyAD~~Ll~~E~~l~~~~~~l~~~~~~l~~~l~~~p~~l~ls~~~s~~P~~i~L~----~~splGy~~v~LL~d~D~l~ 130 (216)
T TIGR03761 55 DPYADWALLRIEEKLLSARQEMQALLQRLDDLLAQLPPALDLSENLSVSPLTVPLF----FRSPLGYRAVYLLVDYDQLA 130 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhccCCCCceeeee----cCChHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999988888876 67778999999999999988 58889999999999999999
Q ss_pred HHHhcCCCceeeec
Q 005627 227 RKVANLGCWQVISP 240 (687)
Q Consensus 227 r~~a~~~~wq~isp 240 (687)
|...-..-+-.|+.
T Consensus 131 r~~l~a~h~glisr 144 (216)
T TIGR03761 131 RRVLLAHHYGLISR 144 (216)
T ss_pred HHHHHHHHHhcCCH
Confidence 88654433333333
Done!