BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005628
(687 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=PRORP1 PE=1 SV=1
Length = 572
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/328 (51%), Positives = 229/328 (69%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDW 687
P NRAL+EKWKNA ALYATP GSNDDW
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDW 476
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 81 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 140
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 141 VCSLAEAATESSPNPGLS-RGFDIFK 165
>sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1
Length = 576
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 202/336 (60%), Gaps = 16/336 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
R+ ++ P +R L+E+W N + LYATP GSNDDW
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDW 482
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCSS 238
L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS+
Sbjct: 92 LLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSA 137
>sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1
Length = 528
Score = 245 bits (625), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 205/336 (61%), Gaps = 16/336 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
R+ ++ P +R L+E+W + LYATP GSNDDW
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDW 423
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAA 240
KK K R+ + L L+ CSK D+ A+ LYD A ++L Q H+ LLYLCS++
Sbjct: 21 KKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCSASI 80
Query: 241 VGV 243
+
Sbjct: 81 TDI 83
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650,
mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2
SV=1
Length = 576
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ K M++ GI P + +Y +S CN G A + M+E + P+ AL
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 333 IDAFVKEGK 341
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
>sp|Q8L6Y3|PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830
OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1
Length = 593
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 283 QALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 338
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+S C G D+AC + M GV P++ + +++
Sbjct: 339 NTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQ 378
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A + K+M G+ P L ++ L+ C G ++KA + M E G P
Sbjct: 135 GKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMGPSPNCVSY 194
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
L++ D+ YL + + + + T ++I K KK E ++
Sbjct: 195 NTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEIL 254
Query: 521 KDTMEN 526
+ N
Sbjct: 255 DSSQAN 260
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 407 NTVLATLCKNGKADQALEIFGKL 429
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 11/155 (7%)
Query: 359 LSEDAKKY-----AFQR------GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407
L+ DA Y AF R E E M D + + V G D A
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL 423
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467
++ ++ +G +P SY S ++GD +A + M+ +G+ P+E +++
Sbjct: 424 EIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483
Query: 468 VEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
G D + LL +R+ S T +++ F
Sbjct: 484 CREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 6/167 (3%)
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPD-----DQSRKKDWSIDNQDADEIRLSEDAKK 365
E L +F + + L++G + R D D+ R KD+S D + I + +
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN-IMIGSLCSR 206
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
++ ++ D + T + M G D A ++ M S G+ P + +Y
Sbjct: 207 GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
+ C G VD+A + ++ G P+ LLR + GK
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Score = 36.2 bits (82), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D AF+++ M+S +P + +Y L FC ++ A +V E M+ +G P E
Sbjct: 487 GMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 461 EALL 464
L+
Sbjct: 547 TVLI 550
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ A + K MK GI P + +Y + C G + +A V ML+ G P
Sbjct: 269 GEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+RV V+AG+ ++V + ++++
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMK 352
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + T + D D A + K+M S+G++P + +Y
Sbjct: 415 EEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNIL 474
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG + KA V E++ + P+ ++ +AGK + + L L S++
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL--SLK 532
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
VSP +VIA R G K+ +SL+K E+
Sbjct: 533 GVSP---NVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ M + GI P + +Y +S CN G A + M+E + P AL
Sbjct: 275 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 334
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 335 IDAFVKEGK 343
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F+ +++M + NE + + R S GD D + + +MK G++P L +Y +
Sbjct: 514 AFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQ 573
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
FC V KA + + ML G+ P+ L++ E+G+
Sbjct: 574 SFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGR 615
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D+A+ ++M+S G P +Y + C G VD+A + + M + G P L
Sbjct: 197 DLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTIL 256
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497
+ + AG+ D L +R VRK++P+ A +
Sbjct: 257 IDGFLIAGRVDEALKQLEMMR--VRKLNPNEATI 288
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD +++++ G P + ++ ++ C ++ A + MLE G+ P E
Sbjct: 474 GDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITY 533
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
L+R G DR L K++ + +SP D+ A + ++ K K E L+
Sbjct: 534 NILIRSCCSTGDTDRSVKLFAKMKEN--GLSP---DLYAYNATIQSFCKMRKVKKAEELL 588
Query: 521 KDTM 524
K +
Sbjct: 589 KTML 592
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
+ M+ GI+P L ++ LS + GDV K V E +L HG P+
Sbjct: 447 FLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPD 494
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D AFD+ +M++ GI P + +Y P +S CN G A + MLE + P+ AL
Sbjct: 267 DDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 327 IDAFVKEGK 335
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + T + D D A + K+M S G++P + +Y
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNIL 432
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L CNNG+V+ A V E+M + + + ++ +AGK + + L L S++
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL--SLK 490
Query: 489 KVSPSTA 495
V P+
Sbjct: 491 GVKPNVV 497
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A ++ +M LG P + + L+ FC+ + +A ++ + M+E G P+ L+
Sbjct: 128 LALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 187
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ K L+ R V+ P
Sbjct: 188 HGLFQHNKASEAVALVE--RMVVKGCQP 213
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449
L+A+ +M D+ + ++M++LGI+ L +Y ++ FC + A ++ M+
Sbjct: 82 LSAIAKM----NKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137
Query: 450 EHGVYPEEPELEALL 464
+ G P L +LL
Sbjct: 138 KLGYGPSIVTLNSLL 152
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
Query: 364 KKYAFQRGFEIYEKMCL----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
K F R F++ E+M L D V ++ + + + A + A + +RM G+
Sbjct: 194 KSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLM 253
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P +Y L V+ +G V++ S+ E + G P+ L ++ EAG D + Y+
Sbjct: 254 PDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYV 313
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L ++++ K + + + + L + +NE L N+ + GK
Sbjct: 314 LQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGK 373
Query: 540 GKW 542
+W
Sbjct: 374 ARW 376
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A E M+ G YP+ +L
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESL 519
+ GK + +L++L S + SP + D +AK + +A +L + + L
Sbjct: 423 ALCKDGKVEDAVEILNQL--SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480
Query: 520 IKDTM 524
DT+
Sbjct: 481 KPDTI 485
>sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830,
chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2
SV=3
Length = 852
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS+G+ P ++ +S N G V++A + E ML G P LL VEA +
Sbjct: 400 MKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQ 459
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAK 500
DR + L + S S D+++K
Sbjct: 460 YDRAFRLFQSWKGSSVNESLYADDIVSK 487
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
MGD + + M+ LG P SY A+ F GDV ACS E ++E P
Sbjct: 520 MGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAA 579
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+L + + G+ D V L+ + +V
Sbjct: 580 YLSLTKGLCQIGEIDAVMLLVRECLGNV 607
Score = 40.4 bits (93), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P +E + RM G + + ++MK G PR+ Y + NG D A +
Sbjct: 190 PPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALA 249
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V E E G+ E L++ +AG+ + + +L ++R ++ K + K
Sbjct: 250 VYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLV 309
Query: 504 SKEAARLGKKKWNE 517
S+ + W+E
Sbjct: 310 SEGNLDASLRVWDE 323
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AF++++ M GI+P + SY ++V CN+G ++ A S ML+ G +P L +L++
Sbjct: 265 AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVK 324
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 406 AFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A D+ +M + G+ P + +Y + FC++G++ KA SV HM E G P +L+
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA-ARLGKKKWNESLIK 521
+ G D Y+ +K+ TS P+ + + N EA R K K ESLI+
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTS--GCCPN----VVVYTNMVEALCRHSKFKEAESLIE 446
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 347 WSIDNQDA----DEIRLS---EDAKKYAF-----------QRGFEIYEKM-CLDEVPMNE 387
WS +DA DE+RL +A+ Y + +E+Y+ M C V E
Sbjct: 349 WSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYE 408
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
+ RM + DMA + MK G+ P + + ++ C+ +D+AC
Sbjct: 409 IMV----RMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNE 464
Query: 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
ML+ G+ P L + ++ G+ D+V L+ K+
Sbjct: 465 MLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKM 500
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E+ E+ C+ ++ A L A+ + GD D + M + M +LG+ P S+ + +
Sbjct: 233 EMLERNCVVDLLAYNALLDALCKS----GDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAY 288
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
C+ GDV A V + M + + P +++ + K D Y LL ++
Sbjct: 289 CDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEM 339
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD A+ ++ RMK + P + ++ + C N VD A + + M++ G P+
Sbjct: 292 GDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTY 351
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+++ + + +R LL ++
Sbjct: 352 NSIMAYHCDHCEVNRATKLLSRM 374
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+++E+M D P N ++ + M G D AF++ M+ G+ P +R+ +
Sbjct: 362 ALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVD 420
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS-VRK 489
C + +D+AC++ E M P+E +L+ + G+ D Y + K+ S R
Sbjct: 421 RLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRT 480
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
S +I +FN G+K+ + KD +
Sbjct: 481 NSIVYTSLIKNFFNH------GRKEDGHKIYKDMI 509
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G DMA+ +++ G+ P +Y + V C +D+A + EH+ ++ P
Sbjct: 251 VGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYA 310
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLR 484
++ AGK D Y LL + R
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQR 335
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
YE+MC + + N + T++ D A +M MK+ G+ + +YG + FC
Sbjct: 607 YEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+++ A ++ +LE G+ P +P +L+
Sbjct: 667 RSNMESASALFSELLEEGLNPSQPIYNSLI 696
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
G D A +++ +M+S GI P + SY + C ++D A V ++LE G+ P
Sbjct: 457 GKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKP 511
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++ MK G++P + SY LS FC + DVD+A V+ M+E G+ P+
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 461 EALLR 465
+L++
Sbjct: 489 SSLIQ 493
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A D+ + M +G+ P +Y ++ +C GD++KA + M+E GV P+ L+
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D D A + + M GI P +Y + FC +AC + E ML G+ P+E
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN----SKEAARLGKKKWNE 517
AL+ G ++ L +++ T V+ N ++EA RL K + E
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y + +C G+ +A + ML HG+ P +L+ +AG +R L ++
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Query: 484 RTSVRKVSPS 493
R VR + P+
Sbjct: 372 R--VRGLCPN 379
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
GD D+A MK G P +YG +S C VD+AC + E M++ G+ P E
Sbjct: 547 GDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPE 603
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
M + + F +V SLG+ P +Y +S +C GD+D A +M HG P+
Sbjct: 514 MKESERLFQLVV---SLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPD 567
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPR 421
KK + ++ FE+ E+M + N + TA+ G + AF + +K ++S P
Sbjct: 298 CKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPN 357
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481
+ +Y + +C +++A + M E G++P L+ +AG R Y L++
Sbjct: 358 VHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMN 417
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M GI+P R Y ++ C GD+ A V+E M+ H + P A++R
Sbjct: 881 VLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALA 940
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+ GK D LL + K+ P+ A
Sbjct: 941 KCGKADEATLLLRFMLK--MKLVPTIA 965
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+ ++ + M G NP + + L +G+ S + ML+ + P+ L+
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 201
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V G ++ YL+ K+ S + T + + W+ K G+ K L+ D M+
Sbjct: 202 VLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKK-----GRFKAAIELL-DHMK 255
Query: 526 NKG 528
+KG
Sbjct: 256 SKG 258
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 47/111 (42%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++++M+ G P + +Y L +C G A + +HM GV + L+
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLC 274
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESL 519
+ + + Y LL +R + + T + + F+++ + + NE L
Sbjct: 275 RSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEML 325
>sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830,
chloroplastic OS=Arabidopsis thaliana
GN=At4g34830/At4g34820 PE=2 SV=2
Length = 1089
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ S+ A+ + + G + A ++ + + GI
Sbjct: 587 AVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV 646
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ +GD D ACS+ + M E V P+E AL+ V+ A D + +L +
Sbjct: 647 YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAK 706
Query: 485 TS-VRKVSPSTADVIAKWFNSKE 506
+ +R + S + ++ N+K+
Sbjct: 707 SQGIRLGTISYSSLMGACCNAKD 729
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L V NE + T + + S+GD AF+ R+++ G++ +
Sbjct: 635 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 694
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V + M
Sbjct: 695 FTYEALLKACCKSGRMQSALAVTKEM 720
Score = 36.2 bits (82), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 48/113 (42%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F ++E M + + + + MG+ D A VK M+ L P R++ P +
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIH 597
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ +GD+ ++ V + M G P L+ VE + ++ +L ++
Sbjct: 598 GYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEM 650
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
GD A D++++MK G+ P + +Y +S GD+++A E M GV P
Sbjct: 743 GDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 797
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 385 MNEASLTAVGRMAMSMGDG-DMAFD------MVKRMKSLGINPRLRSYGPALSVFCNNGD 437
M E + A + +M DG M D + KR+K G P + +YG ++++ G
Sbjct: 440 MEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGK 499
Query: 438 VDKACSVEEHMLEHGV 453
+ KA V M E GV
Sbjct: 500 ISKALEVSRVMKEEGV 515
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD + A ++ M++LG+ P +++Y + + +KA S E M G+ P++
Sbjct: 778 GDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVY 837
Query: 461 EALL 464
LL
Sbjct: 838 HCLL 841
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 385 MNEASLTAVGRMAMSMGD-GDM--AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
+++ S T G M G GDM A + +RM++ GI P R Y + + D+D+A
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 363
Query: 442 CSVEEHMLEHGV 453
S M E G+
Sbjct: 364 LSCVRKMKEEGI 375
>sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391
PE=2 SV=1
Length = 584
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 41/205 (20%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++YG + + DV+ A ++ + ++ H + P L+A + D++
Sbjct: 239 PSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKL 298
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S + ++W
Sbjct: 299 LDILLYLRNNQLYPGESFAHSIKTWFES-----IPGRQW--------------------- 332
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
KG++ TT+ C CG + I L P E E E + I K+
Sbjct: 333 --KGQF----TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQ 386
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVG 615
++F+ +++ PF+ V+D NV
Sbjct: 387 ELKRFESFVNSCPPFDIVIDGLNVA 411
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ I+E M E+ +N + T + + +G + AFD+ + S G+ P + +Y
Sbjct: 415 EKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTM 474
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
+S FC G + +A S+ + M E G P E
Sbjct: 475 ISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G +I+ +M V N + T + + +G D+A ++ +M S P +R+Y L
Sbjct: 347 GMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD 406
Query: 431 VFCNNGDVDKACSVEEHM 448
C NG V+KA + E+M
Sbjct: 407 GLCCNGKVEKALMIFEYM 424
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALS 430
I+++M V + A TA+ MG + M FD RM G+ P + Y ++
Sbjct: 783 IFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFD---RMIESGVKPDVVPYTALIA 839
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
C NG V KA + + MLE G+ P + L A+ ++A KG R
Sbjct: 840 GCCRNGFVLKAVKLVKEMLEKGIKPTKASLSAVHYAKLKA-KGLR 883
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA + K+M S G+ P + +Y
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C G ++KA V E++ + + P+ ++ +AGK + + L L S++
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLK 529
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P +VI R G K+ ++L ++ E+
Sbjct: 530 GVKP---NVIIYTTMISGFCRKGLKEEADALFREMKED 564
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD D+A ++K+M+ I + Y + CN +V+ A ++ M G+ P
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKKWNES 518
+L+R G+ LL + RK++P+ T + F KE + +K +
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAF-VKEGKLVEAEKLYDE 350
Query: 519 LIKDTME 525
+IK +++
Sbjct: 351 MIKRSID 357
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
A ++ RM + G P L +YG ++ C GD+D A S+ + M
Sbjct: 204 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449
L+A+ +M D+ + +RM++L I+ L SY ++ FC + A +V M+
Sbjct: 87 LSAIAKM----NKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 450 EHGVYPEEPELEALL 464
+ G P+ L +LL
Sbjct: 143 KLGYEPDIVTLSSLL 157
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS K+ + + + ++E+M D + S + ++ GD A ++ M G+
Sbjct: 536 LSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGL 595
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+P L +Y ++ F G +D+A S + M++ G P+ +++L+ + G+ D++
Sbjct: 596 SPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTE 655
Query: 479 LLHKL 483
L+ KL
Sbjct: 656 LVKKL 660
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +K MK +G+ L Y + FC+ G++D+ ++ + +LE G P
Sbjct: 226 GKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITY 285
Query: 461 EALLRVSVEAGK 472
L+R + G+
Sbjct: 286 NTLIRGFCKLGQ 297
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD + + +MKS GI P L S + + C NG +++A + M+ ++P
Sbjct: 589 GDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTY 648
Query: 461 EALLRVSVEAGKGDRVY-----YLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKW 515
L S + + D ++ L + ++ S R+V + + K +K+AA +
Sbjct: 649 RIFLDTSSKHKRADAIFKTHETLLSYGIKLS-RQVYNTLIATLCKLGMTKKAAMVMGDME 707
Query: 516 NESLIKDTM 524
I DT+
Sbjct: 708 ARGFIPDTV 716
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P + S T V GD D A+ M GI P + +Y ++ C +DKA
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V M+++GV P+ ++L +G+ L K+R+ + T ++ +
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL- 311
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGL--GWLGKGKWIVSH 546
K + +K +S+ K ++ + + L G+ KG + H
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
G D A + +M+ G+NP +YG + + C +G V+ A E M++ G+ P
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K A + E+ M + V + + ++ S G A +K+M+S G+ P +
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDV 301
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+Y + C NG +A + + M + G+ PE LL+
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 407 FD-MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
FD M KR G+ P + +YG L + G + + + + M+ +G++P+ L+
Sbjct: 324 FDSMTKR----GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379
Query: 466 VSVEAGKGDRVYYLLHKLR 484
+ GK D+ + K+R
Sbjct: 380 AYAKQGKVDQAMLVFSKMR 398
>sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus
GN=Mrpp3 PE=2 SV=1
Length = 587
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 98/256 (38%), Gaps = 50/256 (19%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++YE M + T + R + A +++ +K + + P ++YG +
Sbjct: 196 DVYEIMKAKYKSLESGGYTLLIRGLIHSDRWREALLLLEDIKKVMV-PSKKNYGDCIQGA 254
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK-------GDRVYYLLHKLRT 485
+ DV+ A S+ + ++ H + P L L+ + GK +++ +L LR
Sbjct: 255 LLHQDVNVAWSLYQELVGHNLIP----LLETLKAFFDHGKDMNDDQYSNQLLDILLYLRN 310
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVS 545
+ S A I WF S + ++W KG++
Sbjct: 311 NQLYPGESFAHSIKTWFES-----IPGRQW-----------------------KGQF--- 339
Query: 546 HTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWL 599
TT+ C CG + I L P E E E++ I K+ ++F++++
Sbjct: 340 -TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFV 398
Query: 600 DYYGPFEAVVDAANVG 615
PF+ V+D NV
Sbjct: 399 KSCPPFDIVIDGLNVA 414
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS KK + +++ +M + VP NE + T V G + A MKSLG
Sbjct: 265 LSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGF 324
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
P +Y +S+ GD +KA + E M G+ P
Sbjct: 325 VPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVP 361
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450
AV + +G +MA ++ K M I P + YG ++ F + G+V +A S E M E
Sbjct: 579 CAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKE 638
Query: 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
G+ +L+++ + G D + KL S K
Sbjct: 639 AGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNK 677
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
A GR + D + F+ MK LGI P ++S+ LS + DV K ++ + M E+
Sbjct: 378 AYGRAGLH-SDAEAVFE---EMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSEN 433
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497
GV P+ L ++L + G+ ++ +L ++ P TAD+
Sbjct: 434 GVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMEN-----GPCTADI 474
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 40.4 bits (93), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++V RM +G P L + ++ C NG V A + + M+E G P E +L+
Sbjct: 161 ALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLK 220
Query: 466 VSVEAGKGDRVYYLLHKL 483
V ++G+ LL K+
Sbjct: 221 VMCKSGQTALAMELLRKM 238
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G E++ KM L V + + + + +G ++A ++ + M S + P + SY L
Sbjct: 406 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLD 465
Query: 431 VFCNNGDVDKACSVEEHM------LEHGVY 454
C+NG+ +KA + E + L+ G+Y
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIY 495
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 40.4 bits (93), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
>sp|Q4R366|MRRP3_MACFA Mitochondrial ribonuclease P protein 3 OS=Macaca fascicularis
GN=MRPP3 PE=2 SV=1
Length = 473
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 45/245 (18%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L H P L+A + +
Sbjct: 238 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSN 297
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 298 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 333
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I K+
Sbjct: 334 ----KGQF----TTVQKSGQCLGCGKTIESIQLSPEEYEFLKGGIMRDVIDGGDQYKKTT 385
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 386 PQELKRFENFVKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 441
Query: 649 HNRRI 653
+ +
Sbjct: 442 GRKHM 446
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++V RM +G P L + ++ C NG V A + + M+E G P E +L
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236
Query: 466 VSVEAGKGDRVYYLLHKL 483
V ++G+ LL K+
Sbjct: 237 VMCKSGQTALAMELLRKM 254
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ RM G P +YGP L+V C +G A + M E + + + ++
Sbjct: 212 AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDT 523
+ G D + L +++ ++ AD+I +N+ +W++ L++D
Sbjct: 272 GLCKDGSLDNAFNLFNEM-----EIKGFKADIIT--YNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 524 MENK 527
++ K
Sbjct: 325 IKRK 328
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+G E++ +M + N + T + D D A + K+M S+G++P + +Y L
Sbjct: 411 KGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 470
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
C NG + KA V E++ + P+ ++ +AGK
Sbjct: 471 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ M++ G+ P + +Y +S CN G A + M+E + P AL
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSAL 329
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 330 IDAFVKKGK 338
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 40.0 bits (92), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++GFE+YEKM D V N + V G AF + M+ G++ + +Y
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTL 309
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+ C +++A V + M G+ P L+ GK + L L++ R
Sbjct: 310 IGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS--R 367
Query: 489 KVSPS--TADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
+SPS T +++ F R G ++K+ ME +G
Sbjct: 368 GLSPSLVTYNILVSGF-----CRKGDTSGAAKMVKE-MEERG 403
Score = 39.3 bits (90), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ LG+ P + +Y + FC G +++A + + M+E P E ++ + G
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493
Query: 473 GDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKK 513
R LL ++ ++++P+ A +V+ K SKEA RL +K
Sbjct: 494 SYRALKLLKEMEE--KELAPNVASYRYMIEVLCKERKSKEAERLVEK 538
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A + + +KS G++P L +Y +S FC GD A + + M E G+ P + L+
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
NE + T + G F+M ++M+ G+ P L +Y ++ C +G A V
Sbjct: 232 NERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVF 291
Query: 446 EHMLEHGV 453
+ M E GV
Sbjct: 292 DEMRERGV 299
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+ ++ RM+SL I P +++ + + G DKA + +M EHG + + +L
Sbjct: 110 VWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILD 169
Query: 466 VSVEAGKGDRVYYLLHKLR 484
V ++ + ++ Y L LR
Sbjct: 170 VLCKSKRVEKAYELFRALR 188
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 58/135 (42%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ +E + +M + ++ + T V G+ A ++ M G+ P + +Y
Sbjct: 247 RHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAM 306
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+ V C +V+ A + E M+ G P L+R AG+ R L+ ++
Sbjct: 307 IQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGC 366
Query: 489 KVSPSTADVIAKWFN 503
+ + T +++ ++++
Sbjct: 367 EPNFQTYNMMIRYYS 381
>sp|A5E057|RMD9_LODEL Protein RMD9, mitochondrial OS=Lodderomyces elongisporus (strain
ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL
YB-4239) GN=RMD9 PE=3 SV=1
Length = 623
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKR-MKS 415
+ ++ D+K+++++ IYE ++ P++ L +G++A+ GD D +++ M +
Sbjct: 251 LEVAYDSKRFSYEEILRIYEMSLVENEPIHPYLLERIGQIAIKHGDHARGLDCLEQLMNN 310
Query: 416 LGINPRLRSYGPALS 430
NPR RS ALS
Sbjct: 311 YENNPRARSILGALS 325
>sp|Q9LVS3|PP422_ARATH Pentatricopeptide repeat-containing protein At5g47360
OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1
Length = 477
Score = 39.3 bits (90), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437
+C D V N V R+ GD ++A ++K M +G+ P + +Y ++ +CN G
Sbjct: 161 VCADTVAYN-----LVIRLFADKGDLNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGK 215
Query: 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+D A + + M +H +L ++G +R LL ++
Sbjct: 216 IDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGDMERALELLAEM 261
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM----LEHGVYPE 456
GD D A + K+M S G+ P + +Y L CNNG ++KA V ++M ++ +Y
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 433
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+E + + AGK D + L L S++ V P+
Sbjct: 434 TTMIEGMCK----AGKVDDGWDLFCSL--SLKGVKPNVV 466
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ K M++ GI P + +Y +S C+ G A + M+E + P AL
Sbjct: 202 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 261
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 262 IDAFVKEGK 270
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449
L+A+ +M D+ + ++M+ LGI+ L +Y ++ FC + A ++ M+
Sbjct: 17 LSAIAKMK----KFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 450 EHGVYPEEPELEALL 464
+ G P L +LL
Sbjct: 73 KLGYEPSIVTLSSLL 87
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM----LEHGVYPE 456
GD D A + K+M S G+ P + +Y L CNNG ++KA V ++M ++ +Y
Sbjct: 449 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 508
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+E + + AGK D + L L S++ V P+
Sbjct: 509 TTMIEGMCK----AGKVDDGWDLFCSL--SLKGVKPNVV 541
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ K M++ GI P + +Y +S C+ G A + M+E + P AL
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 337 IDAFVKEGK 345
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 47/106 (44%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
G+ F+++ +M+ +G P + +Y + C D D + + M E V P+
Sbjct: 421 GEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIV 480
Query: 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAA 508
++ GK + Y +++ + + + D+I WF+ K+ A
Sbjct: 481 MIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYA 526
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
GI P + +Y + C ++A V + MLE G++P A +R+ G+ V
Sbjct: 368 GIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRI---LRTGEEV 424
Query: 477 YYLLHKLR 484
+ LL K+R
Sbjct: 425 FELLAKMR 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,890,641
Number of Sequences: 539616
Number of extensions: 11012734
Number of successful extensions: 26035
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 24651
Number of HSP's gapped (non-prelim): 1423
length of query: 687
length of database: 191,569,459
effective HSP length: 124
effective length of query: 563
effective length of database: 124,657,075
effective search space: 70181933225
effective search space used: 70181933225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)