Query 005628
Match_columns 687
No_of_seqs 650 out of 3432
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 11:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1E-53 2.3E-58 506.7 28.8 363 148-559 370-769 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.5E-53 3.2E-58 505.4 29.1 418 144-608 468-916 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 6.6E-49 1.4E-53 460.0 23.1 295 149-484 88-387 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.9E-48 6.3E-53 464.8 22.5 422 147-613 120-595 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 4.3E-47 9.2E-52 454.7 23.5 397 149-617 254-667 (857)
6 PLN03081 pentatricopeptide (PP 100.0 9.9E-47 2.1E-51 441.6 24.7 419 146-636 121-556 (697)
7 PRK11788 tetratricopeptide rep 99.7 2.1E-15 4.5E-20 164.8 24.3 276 162-502 47-326 (389)
8 PRK11788 tetratricopeptide rep 99.6 9E-14 2E-18 151.9 23.9 269 159-493 78-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.4 1.2E-11 2.5E-16 148.6 26.4 310 160-511 407-723 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.4 2.5E-11 5.4E-16 145.7 27.7 282 192-510 602-890 (899)
11 PF13041 PPR_2: PPR repeat fam 99.4 4.2E-13 9.1E-18 101.2 6.8 49 189-237 1-49 (50)
12 PF13041 PPR_2: PPR repeat fam 99.4 3.8E-13 8.3E-18 101.5 5.9 49 385-433 1-49 (50)
13 KOG4422 Uncharacterized conser 99.3 2.7E-10 5.8E-15 118.1 20.5 281 192-497 117-438 (625)
14 KOG4422 Uncharacterized conser 99.2 2.3E-09 5E-14 111.2 23.5 268 192-489 208-554 (625)
15 KOG4318 Bicoid mRNA stability 99.1 1.7E-09 3.7E-14 120.9 14.0 256 171-472 11-286 (1088)
16 PRK15174 Vi polysaccharide exp 98.9 3.2E-07 7E-12 107.0 27.9 290 159-486 51-347 (656)
17 PRK15174 Vi polysaccharide exp 98.8 1.3E-06 2.7E-11 102.1 27.3 281 162-486 88-381 (656)
18 PF12854 PPR_1: PPR repeat 98.8 4.5E-09 9.8E-14 72.0 4.0 32 382-413 2-33 (34)
19 PF12854 PPR_1: PPR repeat 98.8 5.7E-09 1.2E-13 71.5 3.6 32 417-448 2-33 (34)
20 KOG4318 Bicoid mRNA stability 98.7 3.2E-07 6.9E-12 103.2 16.6 243 212-507 11-287 (1088)
21 TIGR00990 3a0801s09 mitochondr 98.7 3.8E-06 8.2E-11 97.7 24.4 254 164-486 308-571 (615)
22 PF13429 TPR_15: Tetratricopep 98.6 2.4E-07 5.2E-12 96.7 11.1 255 162-485 20-276 (280)
23 PF11977 RNase_Zc3h12a: Zc3h12 98.6 1.1E-08 2.4E-13 96.6 0.7 78 607-687 5-92 (155)
24 TIGR02521 type_IV_pilW type IV 98.6 3.2E-05 7E-10 76.6 25.4 127 358-486 105-232 (234)
25 PF13429 TPR_15: Tetratricopep 98.5 9E-07 2E-11 92.3 11.8 251 197-511 14-268 (280)
26 PRK10049 pgaA outer membrane p 98.5 8E-05 1.7E-09 88.8 28.8 287 161-486 60-388 (765)
27 PRK10747 putative protoheme IX 98.4 2E-05 4.3E-10 86.5 21.5 276 163-483 97-387 (398)
28 PRK11447 cellulose synthase su 98.4 4.1E-05 8.9E-10 95.4 25.5 294 160-486 361-700 (1157)
29 TIGR00990 3a0801s09 mitochondr 98.3 0.00011 2.5E-09 85.4 25.2 245 205-511 308-562 (615)
30 COG2956 Predicted N-acetylgluc 98.3 0.00011 2.5E-09 74.8 21.3 245 142-493 34-285 (389)
31 TIGR00540 hemY_coli hemY prote 98.3 7.2E-05 1.6E-09 82.5 22.2 283 162-483 96-396 (409)
32 KOG4626 O-linked N-acetylgluco 98.2 4.1E-05 9E-10 83.5 17.5 282 159-485 125-416 (966)
33 PRK10049 pgaA outer membrane p 98.2 0.00054 1.2E-08 81.7 28.4 290 160-486 93-422 (765)
34 TIGR00756 PPR pentatricopeptid 98.2 1.7E-06 3.8E-11 59.1 4.1 35 192-226 1-35 (35)
35 PRK09782 bacteriophage N4 rece 98.2 0.00032 6.9E-09 84.8 25.3 230 190-486 476-706 (987)
36 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.1E-11 57.7 4.7 33 424-456 2-34 (35)
37 PRK11447 cellulose synthase su 98.1 0.00016 3.4E-09 90.3 22.6 255 196-485 466-739 (1157)
38 PF13812 PPR_3: Pentatricopept 98.1 3.9E-06 8.5E-11 57.2 4.2 33 192-224 2-34 (34)
39 PRK14574 hmsH outer membrane p 98.1 0.00069 1.5E-08 80.3 24.5 128 359-486 299-445 (822)
40 TIGR02521 type_IV_pilW type IV 98.0 0.00052 1.1E-08 67.9 19.9 157 294-486 41-198 (234)
41 PF13812 PPR_3: Pentatricopept 98.0 7.6E-06 1.6E-10 55.7 4.5 32 389-420 3-34 (34)
42 PRK14574 hmsH outer membrane p 98.0 0.0015 3.2E-08 77.5 24.7 284 160-486 44-396 (822)
43 PRK09782 bacteriophage N4 rece 97.9 0.0013 2.8E-08 79.6 23.7 244 164-481 490-735 (987)
44 KOG1840 Kinesin light chain [C 97.9 0.0026 5.7E-08 70.8 23.8 241 159-484 208-477 (508)
45 PRK10747 putative protoheme IX 97.9 0.0009 1.9E-08 73.5 20.1 219 159-449 162-388 (398)
46 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.2E-10 53.0 3.2 31 192-222 1-31 (31)
47 KOG1126 DNA-binding cell divis 97.8 0.0021 4.6E-08 71.5 21.3 278 165-493 334-625 (638)
48 PRK12370 invasion protein regu 97.8 0.00097 2.1E-08 76.6 19.8 239 190-485 255-501 (553)
49 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.7E-10 52.1 3.7 29 424-452 2-30 (31)
50 PRK12370 invasion protein regu 97.8 0.0016 3.6E-08 74.7 21.4 248 165-486 276-535 (553)
51 PF10037 MRP-S27: Mitochondria 97.7 0.00038 8.1E-09 75.7 12.2 113 358-470 72-186 (429)
52 PF08579 RPM2: Mitochondrial r 97.6 0.00058 1.2E-08 59.5 10.5 76 394-469 32-116 (120)
53 PF12569 NARP1: NMDA receptor- 97.6 0.025 5.5E-07 63.7 26.5 295 158-486 12-334 (517)
54 PF12569 NARP1: NMDA receptor- 97.6 0.0086 1.9E-07 67.4 22.7 268 200-502 13-307 (517)
55 KOG2003 TPR repeat-containing 97.6 0.0077 1.7E-07 63.9 19.3 125 358-486 564-689 (840)
56 PF08579 RPM2: Mitochondrial r 97.6 0.00043 9.2E-09 60.2 8.4 78 358-435 31-117 (120)
57 PF06239 ECSIT: Evolutionarily 97.5 0.0007 1.5E-08 66.0 10.8 91 384-474 44-155 (228)
58 TIGR00540 hemY_coli hemY prote 97.5 0.008 1.7E-07 66.3 20.5 227 160-448 163-396 (409)
59 COG3071 HemY Uncharacterized e 97.5 0.018 3.9E-07 60.7 21.1 282 163-486 97-390 (400)
60 KOG4626 O-linked N-acetylgluco 97.5 0.0085 1.8E-07 66.1 19.1 258 192-486 117-383 (966)
61 KOG1840 Kinesin light chain [C 97.5 0.013 2.9E-07 65.3 21.2 165 294-484 251-436 (508)
62 PF10037 MRP-S27: Mitochondria 97.4 0.0019 4.2E-08 70.3 13.4 131 374-504 50-186 (429)
63 KOG1155 Anaphase-promoting com 97.2 0.18 3.9E-06 54.3 24.3 261 163-497 240-509 (559)
64 KOG2003 TPR repeat-containing 97.1 0.012 2.6E-07 62.4 14.8 285 159-483 428-719 (840)
65 PF06239 ECSIT: Evolutionarily 97.1 0.0032 6.9E-08 61.5 9.8 87 351-438 47-154 (228)
66 PF04733 Coatomer_E: Coatomer 97.1 0.0049 1.1E-07 64.4 12.0 124 358-486 137-265 (290)
67 COG2956 Predicted N-acetylgluc 97.0 0.15 3.3E-06 52.6 21.0 263 159-486 78-347 (389)
68 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.032 6.9E-07 60.6 17.0 122 358-486 175-297 (395)
69 KOG1129 TPR repeat-containing 96.9 0.057 1.2E-06 55.5 17.4 244 180-486 212-458 (478)
70 PRK11189 lipoprotein NlpI; Pro 96.9 0.094 2E-06 55.1 20.2 218 204-486 39-265 (296)
71 COG3071 HemY Uncharacterized e 96.9 0.25 5.3E-06 52.4 21.9 244 196-500 87-369 (400)
72 TIGR03302 OM_YfiO outer membra 96.7 0.075 1.6E-06 53.5 16.5 160 294-486 43-232 (235)
73 cd05804 StaR_like StaR_like; a 96.7 0.31 6.7E-06 52.2 22.3 229 200-486 52-293 (355)
74 KOG2076 RNA polymerase III tra 96.7 0.29 6.4E-06 56.7 22.3 298 159-485 216-554 (895)
75 KOG1129 TPR repeat-containing 96.6 0.089 1.9E-06 54.2 16.0 154 294-486 233-387 (478)
76 PF04733 Coatomer_E: Coatomer 96.5 0.033 7.1E-07 58.3 13.0 129 360-500 110-244 (290)
77 KOG2076 RNA polymerase III tra 96.5 0.21 4.6E-06 57.8 20.0 84 157-260 147-231 (895)
78 KOG1126 DNA-binding cell divis 96.5 0.078 1.7E-06 59.4 15.9 248 162-454 365-623 (638)
79 PF05843 Suf: Suppressor of fo 96.5 0.063 1.4E-06 56.0 14.6 130 353-486 3-136 (280)
80 KOG2002 TPR-containing nuclear 96.4 0.55 1.2E-05 55.1 22.0 341 159-540 422-801 (1018)
81 TIGR02552 LcrH_SycD type III s 96.3 0.12 2.5E-06 47.0 13.8 89 360-450 25-113 (135)
82 COG4783 Putative Zn-dependent 96.3 0.31 6.7E-06 53.0 18.6 125 348-493 336-461 (484)
83 cd05804 StaR_like StaR_like; a 96.3 0.58 1.3E-05 50.1 21.4 92 392-484 119-213 (355)
84 PRK15359 type III secretion sy 96.3 0.095 2E-06 48.7 13.1 92 393-486 30-121 (144)
85 cd00189 TPR Tetratricopeptide 96.3 0.065 1.4E-06 43.6 11.0 87 360-448 8-94 (100)
86 KOG3785 Uncharacterized conser 96.2 0.021 4.5E-07 59.2 8.9 188 294-496 295-498 (557)
87 COG3063 PilF Tfp pilus assembl 96.2 0.78 1.7E-05 45.4 19.1 195 193-448 37-233 (250)
88 PRK10370 formate-dependent nit 96.2 0.3 6.6E-06 48.0 16.8 129 365-499 52-185 (198)
89 PRK11189 lipoprotein NlpI; Pro 96.1 0.97 2.1E-05 47.5 21.2 229 165-464 41-277 (296)
90 COG3063 PilF Tfp pilus assembl 96.1 0.41 8.9E-06 47.3 16.5 150 358-510 41-192 (250)
91 PF09976 TPR_21: Tetratricopep 96.1 0.16 3.5E-06 47.1 13.6 122 358-482 18-143 (145)
92 TIGR02552 LcrH_SycD type III s 96.1 0.16 3.6E-06 46.0 13.5 99 386-486 16-114 (135)
93 KOG1070 rRNA processing protei 96.0 0.49 1.1E-05 57.4 19.8 191 248-493 1470-1668(1710)
94 cd00189 TPR Tetratricopeptide 96.0 0.11 2.3E-06 42.3 10.9 96 389-486 2-97 (100)
95 TIGR03302 OM_YfiO outer membra 95.9 0.84 1.8E-05 45.8 19.4 85 366-451 129-232 (235)
96 KOG3081 Vesicle coat complex C 95.9 0.33 7.1E-06 49.0 15.4 121 361-486 146-271 (299)
97 KOG1156 N-terminal acetyltrans 95.9 2 4.3E-05 48.5 22.8 293 157-486 192-511 (700)
98 KOG3785 Uncharacterized conser 95.9 0.18 3.9E-06 52.5 13.8 225 165-460 269-497 (557)
99 KOG3081 Vesicle coat complex C 95.9 0.12 2.6E-06 52.0 12.1 135 360-505 116-255 (299)
100 PRK15359 type III secretion sy 95.8 0.22 4.8E-06 46.3 13.4 120 338-462 11-130 (144)
101 TIGR02795 tol_pal_ybgF tol-pal 95.8 0.2 4.3E-06 43.9 12.6 95 390-486 5-105 (119)
102 KOG3941 Intermediate in Toll s 95.7 0.094 2E-06 53.0 10.8 99 386-484 66-186 (406)
103 PF09295 ChAPs: ChAPs (Chs5p-A 95.7 0.089 1.9E-06 57.2 11.5 116 294-449 179-295 (395)
104 KOG0547 Translocase of outer m 95.5 1.9 4.2E-05 47.1 20.3 123 360-486 436-566 (606)
105 KOG1070 rRNA processing protei 95.5 0.58 1.3E-05 56.8 17.9 226 191-478 1458-1692(1710)
106 TIGR02795 tol_pal_ybgF tol-pal 95.5 0.42 9.2E-06 41.8 13.4 93 358-452 8-106 (119)
107 KOG1155 Anaphase-promoting com 95.4 2.4 5.1E-05 46.2 20.5 125 358-486 336-461 (559)
108 KOG0985 Vesicle coat protein c 95.4 0.53 1.2E-05 55.2 16.4 205 192-481 1079-1303(1666)
109 PF12921 ATP13: Mitochondrial 95.4 0.14 3.1E-06 46.4 9.9 97 386-502 1-98 (126)
110 KOG1128 Uncharacterized conser 95.3 0.41 8.9E-06 54.4 15.1 225 159-468 407-634 (777)
111 KOG1173 Anaphase-promoting com 95.2 1.1 2.4E-05 49.6 17.6 124 361-486 389-518 (611)
112 KOG3616 Selective LIM binding 95.2 0.16 3.5E-06 57.2 11.3 77 358-445 771-847 (1636)
113 PRK14720 transcript cleavage f 95.1 3.3 7.1E-05 49.7 22.3 112 358-486 122-252 (906)
114 KOG1915 Cell cycle control pro 94.9 5.4 0.00012 43.6 21.2 282 161-486 152-466 (677)
115 KOG4340 Uncharacterized conser 94.9 1.4 2.9E-05 45.3 15.9 276 162-511 22-330 (459)
116 KOG2047 mRNA splicing factor [ 94.9 2.3 5E-05 48.0 18.9 292 163-484 360-685 (835)
117 PF12921 ATP13: Mitochondrial 94.8 0.27 5.8E-06 44.6 10.1 55 417-471 47-102 (126)
118 KOG1128 Uncharacterized conser 94.8 0.8 1.7E-05 52.2 15.3 213 196-486 403-616 (777)
119 PF12895 Apc3: Anaphase-promot 94.7 0.05 1.1E-06 45.3 4.7 79 366-447 3-83 (84)
120 COG5010 TadD Flp pilus assembl 94.7 1.5 3.3E-05 44.2 15.6 122 358-482 106-227 (257)
121 KOG4340 Uncharacterized conser 94.5 1.2 2.6E-05 45.6 14.5 173 248-448 156-336 (459)
122 PRK10370 formate-dependent nit 94.4 1.1 2.3E-05 44.1 14.1 109 353-466 75-186 (198)
123 PF09976 TPR_21: Tetratricopep 94.3 0.91 2E-05 42.0 12.7 53 358-412 91-143 (145)
124 PF12895 Apc3: Anaphase-promot 94.3 0.086 1.9E-06 43.8 5.2 80 400-482 2-83 (84)
125 PRK02603 photosystem I assembl 94.2 1.5 3.2E-05 41.9 14.4 108 388-501 36-160 (172)
126 PRK04841 transcriptional regul 94.1 3.1 6.7E-05 50.9 20.3 272 161-486 463-760 (903)
127 PRK04841 transcriptional regul 94.0 8 0.00017 47.2 23.7 276 162-486 421-720 (903)
128 COG4783 Putative Zn-dependent 94.0 1.6 3.4E-05 47.8 15.1 121 362-486 316-437 (484)
129 PRK15179 Vi polysaccharide bio 93.9 1.8 3.9E-05 50.9 16.8 124 358-486 92-217 (694)
130 KOG1914 mRNA cleavage and poly 93.9 1.6 3.5E-05 48.2 15.0 125 358-486 372-501 (656)
131 KOG2002 TPR-containing nuclear 93.8 7.6 0.00017 46.0 21.0 125 358-486 276-409 (1018)
132 KOG3941 Intermediate in Toll s 93.8 0.16 3.4E-06 51.4 6.7 75 364-438 84-174 (406)
133 PRK02603 photosystem I assembl 93.8 1.5 3.3E-05 41.8 13.5 78 358-437 41-121 (172)
134 PLN03088 SGT1, suppressor of 93.8 0.95 2.1E-05 48.9 13.3 101 360-464 10-110 (356)
135 KOG3616 Selective LIM binding 93.7 1.3 2.8E-05 50.3 14.1 107 362-481 742-848 (1636)
136 COG5107 RNA14 Pre-mRNA 3'-end 93.6 1.6 3.5E-05 47.1 13.9 138 353-497 399-540 (660)
137 PRK10153 DNA-binding transcrip 93.6 5.8 0.00013 45.1 19.6 146 345-497 331-491 (517)
138 PF14559 TPR_19: Tetratricopep 93.5 0.22 4.7E-06 39.2 6.0 52 364-416 3-54 (68)
139 KOG1173 Anaphase-promoting com 93.4 7.1 0.00015 43.6 18.8 244 190-465 243-530 (611)
140 PRK15179 Vi polysaccharide bio 93.3 3 6.4E-05 49.1 17.2 121 294-451 96-217 (694)
141 CHL00033 ycf3 photosystem I as 93.3 1.5 3.2E-05 41.7 12.5 56 360-415 43-100 (168)
142 PF05843 Suf: Suppressor of fo 93.2 0.37 8.1E-06 50.2 8.7 97 388-486 2-99 (280)
143 PF03704 BTAD: Bacterial trans 93.1 0.48 1E-05 43.8 8.6 69 390-459 65-138 (146)
144 KOG0495 HAT repeat protein [RN 93.1 20 0.00042 41.0 24.2 323 188-557 476-815 (913)
145 PF14559 TPR_19: Tetratricopep 92.9 0.41 9E-06 37.6 6.8 52 434-486 3-54 (68)
146 KOG2376 Signal recognition par 92.9 9.8 0.00021 42.8 19.0 137 366-506 355-507 (652)
147 KOG2796 Uncharacterized conser 92.7 6.3 0.00014 39.9 15.8 131 358-493 183-320 (366)
148 PLN03088 SGT1, suppressor of 92.5 2.2 4.7E-05 46.2 13.7 90 395-486 10-99 (356)
149 PF14938 SNAP: Soluble NSF att 92.3 2.8 6E-05 43.7 13.9 106 362-467 124-245 (282)
150 CHL00033 ycf3 photosystem I as 92.1 2.5 5.5E-05 40.0 12.3 111 371-482 18-138 (168)
151 KOG0547 Translocase of outer m 92.0 17 0.00037 40.0 19.1 121 363-486 405-532 (606)
152 KOG0985 Vesicle coat protein c 91.9 18 0.00038 43.3 20.1 249 171-483 968-1220(1666)
153 PF04840 Vps16_C: Vps16, C-ter 91.9 1.7 3.8E-05 46.0 11.8 104 358-481 183-286 (319)
154 KOG1915 Cell cycle control pro 91.8 3.3 7.1E-05 45.2 13.5 119 362-486 151-273 (677)
155 KOG0495 HAT repeat protein [RN 91.3 32 0.0007 39.4 24.1 117 366-486 564-680 (913)
156 KOG2376 Signal recognition par 91.1 16 0.00034 41.2 18.0 116 359-486 19-139 (652)
157 KOG1914 mRNA cleavage and poly 91.0 5.1 0.00011 44.5 14.1 125 370-500 349-480 (656)
158 PRK10803 tol-pal system protei 90.9 6.1 0.00013 40.7 14.4 102 388-493 144-251 (263)
159 PRK10866 outer membrane biogen 90.8 12 0.00026 38.0 16.3 158 294-484 42-239 (243)
160 PF13432 TPR_16: Tetratricopep 90.7 1.2 2.5E-05 34.7 7.0 56 430-486 5-60 (65)
161 PF03704 BTAD: Bacterial trans 90.4 4.7 0.0001 37.1 12.0 69 424-493 64-135 (146)
162 PF12688 TPR_5: Tetratrico pep 90.2 6.8 0.00015 35.1 12.3 103 360-468 9-117 (120)
163 KOG1156 N-terminal acetyltrans 90.2 32 0.0007 39.3 19.7 271 192-489 144-471 (700)
164 COG5010 TadD Flp pilus assembl 90.2 8.1 0.00018 39.1 13.8 129 360-493 74-202 (257)
165 PF13432 TPR_16: Tetratricopep 90.1 1.2 2.7E-05 34.6 6.7 56 360-416 5-60 (65)
166 smart00299 CLH Clathrin heavy 90.1 8.2 0.00018 35.2 13.3 119 358-499 13-132 (140)
167 PF13170 DUF4003: Protein of u 89.7 11 0.00025 39.4 15.3 132 299-463 77-223 (297)
168 PLN02789 farnesyltranstransfer 89.5 32 0.00068 36.6 23.8 215 193-470 39-268 (320)
169 KOG3617 WD40 and TPR repeat-co 89.1 3 6.4E-05 48.3 10.8 224 160-448 738-993 (1416)
170 KOG1174 Anaphase-promoting com 89.0 37 0.00081 36.8 19.5 258 195-486 198-467 (564)
171 PF13424 TPR_12: Tetratricopep 87.8 1.4 3E-05 35.7 5.7 60 389-448 7-72 (78)
172 PF13371 TPR_9: Tetratricopept 87.7 3.9 8.5E-05 32.4 8.2 55 431-486 4-58 (73)
173 PF12688 TPR_5: Tetratrico pep 87.6 9.8 0.00021 34.1 11.4 89 395-485 9-103 (120)
174 KOG2053 Mitochondrial inherita 87.3 62 0.0013 38.4 20.0 228 202-492 20-259 (932)
175 KOG3060 Uncharacterized conser 87.0 38 0.00082 34.4 18.4 123 358-486 58-183 (289)
176 PRK10803 tol-pal system protei 86.9 9.5 0.00021 39.3 12.4 97 352-451 144-246 (263)
177 PF13170 DUF4003: Protein of u 86.8 13 0.00029 39.0 13.6 70 207-287 78-150 (297)
178 PRK10866 outer membrane biogen 86.7 24 0.00052 35.8 15.2 88 358-449 150-239 (243)
179 KOG2047 mRNA splicing factor [ 86.4 47 0.001 38.0 17.8 287 159-486 178-506 (835)
180 PRK15363 pathogenicity island 85.9 11 0.00023 35.5 11.0 87 397-486 45-132 (157)
181 PRK14720 transcript cleavage f 85.9 16 0.00035 44.0 15.0 131 348-486 27-178 (906)
182 KOG1538 Uncharacterized conser 85.8 22 0.00048 40.4 14.8 56 192-260 599-656 (1081)
183 PLN03098 LPA1 LOW PSII ACCUMUL 85.7 12 0.00026 41.2 12.8 64 350-416 74-141 (453)
184 PF13414 TPR_11: TPR repeat; P 84.9 4.1 9E-05 31.9 6.9 25 390-414 6-30 (69)
185 PLN03098 LPA1 LOW PSII ACCUMUL 84.9 11 0.00025 41.3 12.1 66 384-451 72-141 (453)
186 PF14938 SNAP: Soluble NSF att 84.1 19 0.0004 37.5 13.3 120 358-493 100-232 (282)
187 PRK15363 pathogenicity island 83.7 18 0.00039 34.0 11.4 89 360-451 43-132 (157)
188 PF13424 TPR_12: Tetratricopep 83.3 2.8 6E-05 33.9 5.4 62 423-484 6-73 (78)
189 KOG2053 Mitochondrial inherita 83.3 25 0.00053 41.6 14.4 115 363-483 20-136 (932)
190 KOG4570 Uncharacterized conser 82.5 11 0.00023 39.2 10.1 103 382-486 59-164 (418)
191 PRK10153 DNA-binding transcrip 82.2 69 0.0015 36.5 17.7 88 369-460 401-489 (517)
192 PF04840 Vps16_C: Vps16, C-ter 82.1 45 0.00098 35.4 15.2 105 388-511 178-282 (319)
193 PF13371 TPR_9: Tetratricopept 81.9 5.7 0.00012 31.4 6.7 54 396-450 4-57 (73)
194 PLN02789 farnesyltranstransfer 81.6 59 0.0013 34.5 16.0 130 358-493 43-176 (320)
195 COG5107 RNA14 Pre-mRNA 3'-end 80.6 27 0.00059 38.1 12.6 58 192-260 398-456 (660)
196 KOG4570 Uncharacterized conser 80.6 7.2 0.00016 40.5 8.0 99 277-416 63-164 (418)
197 PF13762 MNE1: Mitochondrial s 79.8 41 0.00089 31.2 12.1 103 374-476 24-134 (145)
198 PF13414 TPR_11: TPR repeat; P 79.4 7.9 0.00017 30.2 6.6 64 422-486 3-67 (69)
199 PF07035 Mic1: Colon cancer-as 79.1 50 0.0011 31.5 12.8 102 372-483 14-115 (167)
200 KOG3617 WD40 and TPR repeat-co 78.7 1.5E+02 0.0032 35.2 19.9 71 248-379 924-994 (1416)
201 COG3898 Uncharacterized membra 78.7 1E+02 0.0022 33.3 16.5 249 202-486 131-392 (531)
202 PF07079 DUF1347: Protein of u 76.8 1E+02 0.0022 34.0 15.5 173 294-506 16-209 (549)
203 COG3629 DnrI DNA-binding trans 76.7 21 0.00045 37.0 10.2 79 424-503 155-238 (280)
204 smart00299 CLH Clathrin heavy 75.5 24 0.00052 32.1 9.6 89 390-486 10-98 (140)
205 PF13512 TPR_18: Tetratricopep 75.5 24 0.00051 32.6 9.2 52 364-415 22-75 (142)
206 PF09613 HrpB1_HrpK: Bacterial 75.4 52 0.0011 31.0 11.6 17 434-450 56-72 (160)
207 PF13929 mRNA_stabil: mRNA sta 75.0 55 0.0012 34.0 12.6 139 365-503 141-289 (292)
208 PF09205 DUF1955: Domain of un 74.9 68 0.0015 29.4 13.2 122 365-492 15-153 (161)
209 PF10602 RPN7: 26S proteasome 74.5 39 0.00085 32.5 11.1 97 388-486 37-142 (177)
210 KOG0553 TPR repeat-containing 73.3 40 0.00088 35.0 11.1 96 397-497 91-187 (304)
211 PF10300 DUF3808: Protein of u 72.2 59 0.0013 36.5 13.4 118 365-485 246-375 (468)
212 PF07035 Mic1: Colon cancer-as 70.1 1E+02 0.0022 29.4 13.7 126 344-486 22-149 (167)
213 PF00637 Clathrin: Region in C 70.1 2 4.4E-05 39.4 1.0 84 358-448 13-96 (143)
214 PF09613 HrpB1_HrpK: Bacterial 70.0 1E+02 0.0022 29.2 12.2 108 358-473 16-125 (160)
215 KOG0553 TPR repeat-containing 69.8 54 0.0012 34.1 11.1 100 361-465 90-190 (304)
216 KOG3060 Uncharacterized conser 69.6 1.4E+02 0.003 30.6 16.5 118 365-486 99-220 (289)
217 COG3629 DnrI DNA-binding trans 68.7 45 0.00098 34.6 10.5 79 387-466 153-236 (280)
218 PF13929 mRNA_stabil: mRNA sta 68.6 52 0.0011 34.1 10.8 101 369-469 183-290 (292)
219 PF02284 COX5A: Cytochrome c o 67.9 29 0.00063 30.1 7.3 60 370-430 28-87 (108)
220 PHA02875 ankyrin repeat protei 67.0 1.9E+02 0.0041 31.5 16.0 88 358-458 138-231 (413)
221 COG4700 Uncharacterized protei 66.3 1.3E+02 0.0029 29.2 14.5 122 358-483 95-219 (251)
222 KOG0276 Vesicle coat complex C 66.0 24 0.00052 39.9 8.2 101 362-483 647-747 (794)
223 PHA02875 ankyrin repeat protei 65.5 54 0.0012 35.9 11.3 116 359-493 106-229 (413)
224 PF00637 Clathrin: Region in C 65.3 1.5 3.3E-05 40.3 -0.9 88 392-486 12-99 (143)
225 PF07079 DUF1347: Protein of u 64.9 47 0.001 36.5 9.9 48 353-400 129-180 (549)
226 PF13512 TPR_18: Tetratricopep 64.6 80 0.0017 29.2 10.2 97 388-486 12-128 (142)
227 PF13176 TPR_7: Tetratricopept 63.6 15 0.00032 24.9 4.1 26 193-218 1-26 (36)
228 cd00923 Cyt_c_Oxidase_Va Cytoc 63.5 37 0.0008 29.1 7.1 60 370-430 25-84 (103)
229 PF13176 TPR_7: Tetratricopept 63.2 13 0.00028 25.2 3.7 23 390-412 2-24 (36)
230 PF13525 YfiO: Outer membrane 62.9 1.6E+02 0.0034 28.8 13.8 149 294-486 15-170 (203)
231 KOG1538 Uncharacterized conser 62.6 78 0.0017 36.3 11.3 79 362-451 757-846 (1081)
232 PF10602 RPN7: 26S proteasome 62.2 77 0.0017 30.4 10.3 90 358-449 42-140 (177)
233 PF04184 ST7: ST7 protein; In 62.1 1.2E+02 0.0026 33.9 12.5 59 427-485 264-323 (539)
234 COG1729 Uncharacterized protei 60.2 1E+02 0.0022 31.6 10.9 95 389-486 144-244 (262)
235 TIGR02561 HrpB1_HrpK type III 60.0 1.5E+02 0.0033 27.7 11.1 77 364-445 22-99 (153)
236 cd00923 Cyt_c_Oxidase_Va Cytoc 60.0 51 0.0011 28.3 7.3 45 405-449 25-69 (103)
237 PF04053 Coatomer_WDAD: Coatom 59.2 59 0.0013 36.2 10.0 101 354-482 298-398 (443)
238 COG3118 Thioredoxin domain-con 58.9 2.2E+02 0.0049 29.7 13.1 130 360-493 142-272 (304)
239 COG4235 Cytochrome c biogenesi 58.4 1.6E+02 0.0035 30.6 12.2 100 384-486 153-256 (287)
240 PF13762 MNE1: Mitochondrial s 58.0 74 0.0016 29.5 8.8 80 358-437 45-130 (145)
241 KOG1920 IkappaB kinase complex 58.0 3.1E+02 0.0068 34.0 15.9 31 188-219 788-820 (1265)
242 PF13374 TPR_10: Tetratricopep 55.8 28 0.0006 23.7 4.6 27 388-414 3-29 (42)
243 PRK15331 chaperone protein Sic 55.6 1.3E+02 0.0028 28.6 10.0 87 362-450 47-133 (165)
244 PF04184 ST7: ST7 protein; In 55.3 1.1E+02 0.0023 34.4 10.7 78 360-437 267-346 (539)
245 PF02284 COX5A: Cytochrome c o 55.2 35 0.00077 29.5 5.7 45 442-486 30-74 (108)
246 COG0735 Fur Fe2+/Zn2+ uptake r 55.1 1.3E+02 0.0029 27.8 10.2 62 443-505 7-69 (145)
247 PF04053 Coatomer_WDAD: Coatom 55.0 1.3E+02 0.0028 33.6 11.8 97 364-481 330-426 (443)
248 COG1729 Uncharacterized protei 54.4 1.4E+02 0.0031 30.6 10.9 97 353-451 144-244 (262)
249 PF13525 YfiO: Outer membrane 54.2 73 0.0016 31.2 8.8 56 361-416 14-71 (203)
250 PHA03100 ankyrin repeat protei 54.0 1.2E+02 0.0026 33.9 11.7 216 195-458 36-279 (480)
251 PF10300 DUF3808: Protein of u 53.9 2.2E+02 0.0048 32.0 13.7 142 358-502 194-349 (468)
252 COG4235 Cytochrome c biogenesi 53.1 2.2E+02 0.0047 29.7 12.1 111 351-466 156-269 (287)
253 PF11848 DUF3368: Domain of un 52.8 43 0.00093 24.6 5.2 38 198-235 9-46 (48)
254 PF09205 DUF1955: Domain of un 52.3 88 0.0019 28.7 7.9 60 358-418 92-151 (161)
255 PF13374 TPR_10: Tetratricopep 52.3 34 0.00074 23.2 4.6 28 192-219 3-30 (42)
256 KOG1127 TPR repeat-containing 51.9 2.1E+02 0.0045 34.9 12.9 130 353-486 494-625 (1238)
257 KOG0548 Molecular co-chaperone 51.8 3.6E+02 0.0077 30.5 14.1 88 360-448 306-418 (539)
258 KOG2280 Vacuolar assembly/sort 51.0 95 0.0021 36.3 9.8 73 364-446 696-768 (829)
259 PF11838 ERAP1_C: ERAP1-like C 50.5 2.8E+02 0.0061 28.9 13.4 96 358-456 135-236 (324)
260 KOG4162 Predicted calmodulin-b 50.4 2.9E+02 0.0063 32.6 13.6 80 404-485 461-541 (799)
261 PRK15331 chaperone protein Sic 50.1 1E+02 0.0022 29.3 8.5 88 396-486 46-134 (165)
262 COG3118 Thioredoxin domain-con 50.0 3.2E+02 0.007 28.5 14.0 114 358-474 174-289 (304)
263 PF13428 TPR_14: Tetratricopep 47.0 41 0.00089 23.8 4.3 28 459-486 3-30 (44)
264 PF10345 Cohesin_load: Cohesin 46.5 5.3E+02 0.012 30.0 17.4 87 399-485 373-481 (608)
265 KOG1125 TPR repeat-containing 46.5 2.3E+02 0.0051 32.1 11.8 158 358-525 359-526 (579)
266 PF11848 DUF3368: Domain of un 46.4 63 0.0014 23.7 5.2 31 434-464 14-44 (48)
267 PF12796 Ank_2: Ankyrin repeat 45.5 43 0.00093 27.4 4.9 55 393-456 29-86 (89)
268 PF11207 DUF2989: Protein of u 45.0 1.5E+02 0.0032 29.2 8.9 73 369-442 123-198 (203)
269 PF13428 TPR_14: Tetratricopep 44.1 47 0.001 23.5 4.2 28 193-220 3-30 (44)
270 KOG1920 IkappaB kinase complex 43.7 1.3E+02 0.0029 37.0 10.0 76 360-446 973-1050(1265)
271 KOG0543 FKBP-type peptidyl-pro 42.5 2.6E+02 0.0057 30.4 11.1 90 360-450 216-319 (397)
272 PRK10564 maltose regulon perip 42.1 45 0.00097 34.8 5.2 49 185-233 250-299 (303)
273 COG2178 Predicted RNA-binding 41.9 2E+02 0.0043 28.2 9.1 108 369-486 20-150 (204)
274 KOG0548 Molecular co-chaperone 40.6 2.2E+02 0.0048 32.0 10.4 104 360-467 10-114 (539)
275 COG4700 Uncharacterized protei 40.6 3.6E+02 0.0078 26.4 11.8 107 383-493 85-194 (251)
276 KOG2297 Predicted translation 39.6 88 0.0019 32.7 6.7 51 85-136 35-85 (412)
277 KOG2297 Predicted translation 38.9 4.9E+02 0.011 27.4 11.9 40 192-237 166-207 (412)
278 KOG4555 TPR repeat-containing 38.8 3.1E+02 0.0068 25.2 10.4 53 397-450 53-105 (175)
279 COG4649 Uncharacterized protei 38.4 3.8E+02 0.0081 25.9 10.6 126 294-451 68-196 (221)
280 PF11663 Toxin_YhaV: Toxin wit 38.1 39 0.00084 30.8 3.5 34 160-201 105-138 (140)
281 PF10366 Vps39_1: Vacuolar sor 37.6 1.7E+02 0.0037 25.6 7.5 26 425-450 42-67 (108)
282 PF11207 DUF2989: Protein of u 37.5 2E+02 0.0043 28.3 8.6 80 397-478 117-199 (203)
283 COG4455 ImpE Protein of avirul 37.2 2.3E+02 0.0049 28.4 8.8 72 358-430 7-80 (273)
284 PF13281 DUF4071: Domain of un 36.9 5.8E+02 0.013 27.7 18.6 32 187-220 139-170 (374)
285 COG4455 ImpE Protein of avirul 36.5 1.6E+02 0.0034 29.5 7.6 79 389-468 3-83 (273)
286 KOG2041 WD40 repeat protein [G 36.4 2.4E+02 0.0051 33.0 9.9 90 384-486 849-952 (1189)
287 PHA03100 ankyrin repeat protei 36.3 1.2E+02 0.0027 33.7 8.3 172 294-480 42-237 (480)
288 KOG2796 Uncharacterized conser 35.8 2.5E+02 0.0055 28.9 9.1 99 388-486 178-281 (366)
289 KOG4555 TPR repeat-containing 35.4 3.6E+02 0.0078 24.8 10.3 91 361-452 52-145 (175)
290 KOG2041 WD40 repeat protein [G 34.5 2.4E+02 0.0053 32.9 9.6 54 421-483 851-904 (1189)
291 PF11846 DUF3366: Domain of un 33.5 1.7E+02 0.0036 28.3 7.6 34 453-486 140-173 (193)
292 PRK15180 Vi polysaccharide bio 32.7 6.7E+02 0.014 28.1 12.2 120 363-486 300-420 (831)
293 PRK10564 maltose regulon perip 31.8 79 0.0017 33.0 5.1 42 383-424 252-294 (303)
294 PF12926 MOZART2: Mitotic-spin 31.6 3.1E+02 0.0067 23.1 7.5 62 422-485 10-71 (88)
295 KOG0276 Vesicle coat complex C 31.2 3.4E+02 0.0074 31.2 10.0 81 351-447 666-746 (794)
296 PF10475 DUF2450: Protein of u 31.1 5.6E+02 0.012 26.6 11.6 132 358-502 104-240 (291)
297 KOG0543 FKBP-type peptidyl-pro 31.0 5.3E+02 0.011 28.1 11.2 106 396-504 217-337 (397)
298 PF11838 ERAP1_C: ERAP1-like C 31.0 6.2E+02 0.013 26.2 12.2 120 358-483 175-305 (324)
299 TIGR03504 FimV_Cterm FimV C-te 30.9 82 0.0018 22.8 3.6 22 394-415 6-27 (44)
300 PF13281 DUF4071: Domain of un 30.9 7.3E+02 0.016 27.0 18.2 120 365-486 195-334 (374)
301 PF11846 DUF3366: Domain of un 30.9 1.6E+02 0.0035 28.4 7.1 52 399-450 120-172 (193)
302 PF07721 TPR_4: Tetratricopept 30.3 80 0.0017 19.6 3.1 18 393-410 7-24 (26)
303 PF00515 TPR_1: Tetratricopept 30.3 1.4E+02 0.003 19.3 4.6 29 192-220 2-30 (34)
304 KOG4162 Predicted calmodulin-b 30.0 1E+03 0.022 28.4 21.3 111 375-486 311-423 (799)
305 PF09670 Cas_Cas02710: CRISPR- 29.9 6.3E+02 0.014 27.5 12.1 56 360-416 139-198 (379)
306 TIGR02508 type_III_yscG type I 29.8 3.3E+02 0.0071 23.8 7.5 49 432-486 49-97 (115)
307 KOG4077 Cytochrome c oxidase, 29.7 2.3E+02 0.0051 25.7 6.9 59 370-429 67-125 (149)
308 COG0457 NrfG FOG: TPR repeat [ 29.5 4.4E+02 0.0095 24.0 16.0 128 358-486 65-196 (291)
309 PF08631 SPO22: Meiosis protei 29.2 6.4E+02 0.014 25.9 20.8 98 358-458 90-193 (278)
310 KOG1125 TPR repeat-containing 29.1 9.2E+02 0.02 27.6 21.7 111 362-476 440-561 (579)
311 TIGR02508 type_III_yscG type I 28.6 2.9E+02 0.0063 24.1 7.0 79 367-452 20-98 (115)
312 TIGR03504 FimV_Cterm FimV C-te 28.5 1.1E+02 0.0024 22.1 3.9 23 429-451 6-28 (44)
313 TIGR02561 HrpB1_HrpK type III 28.5 5E+02 0.011 24.3 13.9 96 400-502 23-120 (153)
314 KOG1127 TPR repeat-containing 27.7 1.2E+03 0.027 28.7 14.4 43 248-306 504-548 (1238)
315 PRK11906 transcriptional regul 27.3 6.1E+02 0.013 28.3 11.1 112 365-482 317-432 (458)
316 KOG2610 Uncharacterized conser 27.1 5.7E+02 0.012 27.3 10.2 120 364-486 115-238 (491)
317 COG4003 Uncharacterized protei 26.6 1.2E+02 0.0025 25.1 4.1 26 358-383 37-62 (98)
318 cd00280 TRFH Telomeric Repeat 26.3 3.5E+02 0.0075 26.3 7.9 67 368-437 85-158 (200)
319 KOG2908 26S proteasome regulat 26.0 5E+02 0.011 27.8 9.6 83 358-440 81-175 (380)
320 COG5108 RPO41 Mitochondrial DN 26.0 2.7E+02 0.0059 32.3 8.2 91 357-450 33-131 (1117)
321 COG3898 Uncharacterized membra 25.8 9.1E+02 0.02 26.5 12.8 116 365-485 97-216 (531)
322 smart00544 MA3 Domain in DAP-5 25.7 4.3E+02 0.0094 22.7 8.3 98 389-486 4-105 (113)
323 PF11663 Toxin_YhaV: Toxin wit 24.6 68 0.0015 29.3 2.7 28 436-465 109-136 (140)
324 PF13431 TPR_17: Tetratricopep 24.3 77 0.0017 21.2 2.4 23 385-407 11-33 (34)
325 PRK07764 DNA polymerase III su 24.1 1.2E+03 0.025 28.5 13.8 82 369-454 182-279 (824)
326 PF12926 MOZART2: Mitotic-spin 24.0 2.7E+02 0.0058 23.4 5.8 44 373-416 29-72 (88)
327 PHA02989 ankyrin repeat protei 24.0 2.1E+02 0.0045 32.3 7.3 143 306-457 18-175 (494)
328 PHA02989 ankyrin repeat protei 23.8 6.2E+02 0.014 28.4 11.2 117 303-424 87-215 (494)
329 PF13174 TPR_6: Tetratricopept 23.3 96 0.0021 19.6 2.8 22 465-486 8-29 (33)
330 COG2178 Predicted RNA-binding 23.2 4.6E+02 0.01 25.7 8.2 89 361-450 38-149 (204)
331 PRK14956 DNA polymerase III su 23.1 1.1E+03 0.024 26.6 14.1 109 370-504 184-294 (484)
332 KOG2908 26S proteasome regulat 23.1 6.1E+02 0.013 27.1 9.6 87 391-477 79-177 (380)
333 COG5108 RPO41 Mitochondrial DN 22.3 9.9E+02 0.021 28.0 11.6 74 392-468 33-114 (1117)
334 PF14689 SPOB_a: Sensor_kinase 22.2 1.2E+02 0.0027 23.5 3.5 26 390-415 26-51 (62)
335 COG0457 NrfG FOG: TPR repeat [ 21.8 6.1E+02 0.013 23.0 16.1 126 358-486 101-231 (291)
336 KOG4077 Cytochrome c oxidase, 21.6 4E+02 0.0087 24.3 6.9 39 448-486 75-113 (149)
337 PF14689 SPOB_a: Sensor_kinase 21.5 1.3E+02 0.0027 23.4 3.4 26 461-486 27-52 (62)
338 COG3947 Response regulator con 21.3 4E+02 0.0088 27.9 7.8 57 391-448 283-339 (361)
339 KOG0624 dsRNA-activated protei 21.2 1E+03 0.023 25.5 22.4 125 360-486 114-252 (504)
340 cd08819 CARD_MDA5_2 Caspase ac 21.2 5.1E+02 0.011 21.9 7.2 67 371-443 21-87 (88)
341 PF07163 Pex26: Pex26 protein; 21.2 7.5E+02 0.016 25.8 9.6 87 392-480 88-181 (309)
342 PF03745 DUF309: Domain of unk 21.1 3.2E+02 0.0069 21.3 5.6 48 432-479 9-61 (62)
343 PF12796 Ank_2: Ankyrin repeat 20.5 2.2E+02 0.0047 23.0 5.1 76 396-486 3-81 (89)
344 KOG2114 Vacuolar assembly/sort 20.4 8.3E+02 0.018 29.4 10.9 25 10-34 74-99 (933)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-53 Score=506.69 Aligned_cols=363 Identities=14% Similarity=0.162 Sum_probs=331.3
Q ss_pred hHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCC--------------------------CCCCcHHHHHHHHHHH
Q 005628 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSK--------------------------KDRSEQFQLRVELDMC 201 (687)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~--------------------------g~~P~~~tyn~lI~~~ 201 (687)
...+...+. .+.+.++..+|+++|++|.+.|..+.. -..||..+||.+|.+|
T Consensus 370 ~~~~~~~y~--~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 370 SPEYIDAYN--RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred chHHHHHHH--HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445566665 677889999999999999887754311 0138999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-Cccc
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ 280 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~t 280 (687)
++.|++++|+++|++|++.|+.||.++||+||++|+ ++|++++|.++|+ +|.+. |+. |.+|
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~----------k~G~vd~A~~vf~-------eM~~~-Gv~PdvvT 509 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA----------KSGKVDAMFEVFH-------EMVNA-GVEANVHT 509 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hCcCHHHHHHHHH-------HHHHc-CCCCCHHH
Confidence 999999999999999999999999999999999999 9999999999994 88887 887 9999
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcc--cCCCCChhh
Q 005628 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRK--KDWSIDNQD 353 (687)
Q Consensus 281 yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~--~g~~pd~~t 353 (687)
||+||++ |++.|++++|.++|++|.+.|+.||.+||+ .+|.+|| +.|..+|.+|.. .|+.||.++
T Consensus 510 ynaLI~g------y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn--sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 510 FGALIDG------CARAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred HHHHHHH------HHHCcCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999999 999999999999999999999999999999 9999998 567779999976 689999999
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
||+ ||++|++.|++++|.++|++|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 582 yna-LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGA-LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHH-HHHHHcCHHHHHh
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARL 510 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a 510 (687)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|... ++.|+ +|++ |.++|+.+..
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--g~~PdvvtyN~LI~gy~k~G~~--- 735 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KLRPTVSTMNALITALCEGNQL--- 735 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCH---
Confidence 99999999999999999999999999999999999999999999999999998 77777 8988 8888887764
Q ss_pred hcccchhhHHHHHhhhcCCcccccccCCCCccEEEeeeecCCCcccccc
Q 005628 511 GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCG 559 (687)
Q Consensus 511 ~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~ 559 (687)
++|++ +|.+|...|+.||.+|| +.++.++|+.+.
T Consensus 736 ----------eeAle----lf~eM~~~Gi~Pd~~Ty-~sLL~a~~k~G~ 769 (1060)
T PLN03218 736 ----------PKALE----VLSEMKRLGLCPNTITY-SILLVASERKDD 769 (1060)
T ss_pred ----------HHHHH----HHHHHHHcCCCCCHHHH-HHHHHHHHHCCC
Confidence 55556 88888888888888888 666677777665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-53 Score=505.37 Aligned_cols=418 Identities=12% Similarity=0.135 Sum_probs=293.8
Q ss_pred CccchHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005628 144 GIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (687)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~ 223 (687)
..+...+||..+. .+++.++.++|.++|++|.+. |+.||.++||+||++|++.|++++|+++|++|...|+.
T Consensus 468 l~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~------Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 468 LKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNA------GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred CCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 3445555555555 555666666666666666333 44555577777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc-CCCC-CccchhccccccccccccccCCChh
Q 005628 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPMIDKLESNSSYRFD 301 (687)
Q Consensus 224 pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~ 301 (687)
||.+|||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+||++ |++.|+++
T Consensus 540 PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTynaLI~a------y~k~G~ld 596 (1060)
T PLN03218 540 PDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGALMKA------CANAGQVD 596 (1060)
T ss_pred CCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHHHHHH------HHHCCCHH
Confidence 77777777777777 6777777777773 66542 2555 67777777777 77777777
Q ss_pred hHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHH
Q 005628 302 DLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (687)
Q Consensus 302 ~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (687)
+|.++|++|.+.|+.|+.++|+ .+|.+|| ++|..+|.+|...|+.||.++|++ ||++|++.|++++|.++|+
T Consensus 597 eA~elf~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns-LI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-LVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHH
Confidence 7777777777777777777777 7777777 455667778888888888888877 7788888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005628 377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 377 ~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
+|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888887777788888888888888888888888888888887788888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHHHHHhhcc-----cchh-------hHHHH
Q 005628 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKK-----KWNE-------SLIKD 522 (687)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~-----~~~~-------~~v~e 522 (687)
..||++||.+|++.|++++|.++|.+|.+. |+.|+ +|+.|.++|... ..+++.. .|+. ....+
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tynsLIglc~~~-y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRCITGLCLRR-FEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhccccccccchHHH
Confidence 888888888888888888888888888777 55555 677766666531 2222210 1111 12356
Q ss_pred HhhhcCCcccccccCCCCccEEEeeeecCCCcccccccccc-----cccCCH-----HHHHHHHHHHHHHHHhhhcchhH
Q 005628 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA-----IIDLDP-----IETEKFAESVASIAIKRERNSSF 592 (687)
Q Consensus 523 a~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~~~L~-----~~~l~~-----~e~~~l~~~i~~~~~~~~~~~~~ 592 (687)
|+. +|++|...|+.||.+||+. ++.++|..++..+. .+.+.+ ..|..+++.+ + ....++|
T Consensus 831 Al~----lf~eM~~~Gi~Pd~~T~~~-vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~--~~~~~A~ 900 (1060)
T PLN03218 831 ALM----VYRETISAGTLPTMEVLSQ-VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---G--EYDPRAF 900 (1060)
T ss_pred HHH----HHHHHHHCCCCCCHHHHHH-HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---c--cChHHHH
Confidence 777 9999999999999999954 44777776654321 121111 2344444433 1 1124689
Q ss_pred HHHHHHHhhcCCccEE
Q 005628 593 QKFQKWLDYYGPFEAV 608 (687)
Q Consensus 593 ~~F~~~l~~~~~yd~v 608 (687)
..|+++...+..+++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999888655554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.6e-49 Score=459.97 Aligned_cols=295 Identities=11% Similarity=0.076 Sum_probs=207.4
Q ss_pred HhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005628 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (687)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (687)
.+++..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..+
T Consensus 88 ~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 88 VSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred eeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 35666666 7778999999999999995432 3568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHH
Q 005628 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 229 yn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
||.||++|+ ++|++++|.++|+ +|.+ +|.++||+||.+ |++.|++++|.++|+
T Consensus 161 ~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~----~~~~t~n~li~~------~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 161 MNRVLLMHV----------KCGMLIDARRLFD-------EMPE----RNLASWGTIIGG------LVDAGNYREAFALFR 213 (697)
T ss_pred HHHHHHHHh----------cCCCHHHHHHHHh-------cCCC----CCeeeHHHHHHH------HHHCcCHHHHHHHHH
Confidence 999999999 9999999999995 6654 389999999999 999999999999999
Q ss_pred HHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+|.+.|+.||..||+ .++.+++ ..+..++..+.+.|+.||..+||+ ||++|++.|++++|.++|++|..
T Consensus 214 ~M~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~--- 287 (697)
T PLN03081 214 EMWEDGSDAEPRTFV--VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPE--- 287 (697)
T ss_pred HHHHhCCCCChhhHH--HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH-HHHHHHHCCCHHHHHHHHHhCCC---
Confidence 999999999888887 6665554 223334555555555555555555 55555555555555555555532
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+|
T Consensus 288 -~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 288 -KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred -CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005628 464 LRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~ 484 (687)
|++|++.|++++|.++|++|.
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC
Confidence 555555555555555555543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-48 Score=464.76 Aligned_cols=422 Identities=13% Similarity=0.041 Sum_probs=336.8
Q ss_pred chHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005628 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (687)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (687)
.+..+|..+. .+.+.++.++|+++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||.
T Consensus 120 ~~~~~n~li~--~~~~~g~~~~A~~~f~~m~----------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 120 GVRLGNAMLS--MFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187 (857)
T ss_pred CchHHHHHHH--HHHhCCChHHHHHHHhcCC----------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 3444555555 5667777777777777772 245577777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcccC----C---------------------cccCCCCchhhhhhhhhhcccccccccccCCCCCccch
Q 005628 227 YHYNVLLYLCSSAAVG----V---------------------VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (687)
Q Consensus 227 ~tyn~Ll~~~~~~~~~----~---------------------~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ty 281 (687)
+||+++|++|++.+.. . .-|.++|++++|..+|+ +|... |.++|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~-------~m~~~----d~~s~ 256 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD-------RMPRR----DCISW 256 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh-------cCCCC----Ccchh
Confidence 7777777776643211 0 00559999999999996 55443 88999
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHH
Q 005628 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADE 356 (687)
Q Consensus 282 n~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~ 356 (687)
|+||.+ |++.|++++|.++|.+|.+.|+.||.+||+ .++.+++ +.++.++..|...|+.||..+||+
T Consensus 257 n~li~~------~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 257 NAMISG------YFENGECLEGLELFFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred HHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 999999 999999999999999999999999999999 9999998 456679999999999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
||++|++.|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|
T Consensus 329 -Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 329 -LIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred -HHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 9999999999999999999997 48999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcCHHHHHhhccc-
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKK- 514 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~- 514 (687)
++++|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|.+. ...+|+. |.+++..+...+|....
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999764 2337887 88888877665544110
Q ss_pred -------c-------------hhhHHHHHhhhcCCcccccccCCCCccEEEeeeecCCCccccccccccc--ccCCHHHH
Q 005628 515 -------W-------------NESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI--IDLDPIET 572 (687)
Q Consensus 515 -------~-------------~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~~~L~~--~~l~~~e~ 572 (687)
. ..+.++++.+ ++..|...|+.|+..++ +.+++++|+++....+. ++-...+.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKE----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHH----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 0 1123333333 55666777777777777 77778888877543211 11112334
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHhhcCCccEEEeccc
Q 005628 573 EKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAAN 613 (687)
Q Consensus 573 ~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~~yd~vIDGan 613 (687)
..|...|..++..+...++++.|++|.+.+..+|.+.-..-
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 56777778888888889999999999988766666554443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-47 Score=454.69 Aligned_cols=397 Identities=12% Similarity=0.021 Sum_probs=282.5
Q ss_pred HhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005628 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (687)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (687)
.+||..+. .+.+.++.++|+++|++|...| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||..+
T Consensus 254 ~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 254 ISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred chhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 34444444 4444444444444444443332 233335555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHH
Q 005628 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 229 yn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
||+||.+|+ ++|++++|.++|+ +|.. +|.++||+||.+ |++.|++++|.++|+
T Consensus 326 ~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~----~d~~s~n~li~~------~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 326 CNSLIQMYL----------SLGSWGEAEKVFS-------RMET----KDAVSWTAMISG------YEKNGLPDKALETYA 378 (857)
T ss_pred HHHHHHHHH----------hcCCHHHHHHHHh-------hCCC----CCeeeHHHHHHH------HHhCCCHHHHHHHHH
Confidence 555555555 8899999999995 5543 288899999999 999999999999999
Q ss_pred HHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+|.+.|+.||.+||+ .++.+++ +.+..++..|.+.|+.||..+||+ ||++|++.|++++|.++|++|.+
T Consensus 379 ~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 379 LMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCHHHHHHHHHhCCC---
Confidence 999999999999999 9999887 456678999999999999999999 99999999999999999999974
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+|+++||+||.+|++.|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.+.+++..|.+.|+.+|..++|+|
T Consensus 453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 6888999999999999999999999999975 58899999999998888888888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcCHHHHHhhcccchhhHHHHHhhhcCCcccccccCCCCcc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~ 542 (687)
|++|+++|++++|.++|++| . .+..+|++ |.++++.|.. ++|++ +|++|...|+.||
T Consensus 531 i~~y~k~G~~~~A~~~f~~~--~---~d~~s~n~lI~~~~~~G~~-------------~~A~~----lf~~M~~~g~~Pd 588 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH--E---KDVVSWNILLTGYVAHGKG-------------SMAVE----LFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc--C---CChhhHHHHHHHHHHcCCH-------------HHHHH----HHHHHHHcCCCCC
Confidence 88888888888888888776 1 22337777 6777666653 45555 8888888888888
Q ss_pred EEEeeeecCCCcccccccc--------c---ccccCCHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHhhcCCccEEEec
Q 005628 543 IVSHTTVGGDALCKCCGEK--------L---AIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDA 611 (687)
Q Consensus 543 ~vt~t~vl~~g~C~~~~~~--------L---~~~~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~~yd~vIDG 611 (687)
.+|| +.++.+.|..+... + ..+.++.+.|..+++.+.+.+...+ +.+.|++|- ..+|.++++
T Consensus 589 ~~T~-~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e---A~~~~~~m~---~~pd~~~~~ 661 (857)
T PLN03077 589 EVTF-ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMP---ITPDPAVWG 661 (857)
T ss_pred cccH-HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH---HHHHHHHCC---CCCCHHHHH
Confidence 8888 55555555544321 1 1233344556666665554444333 334444431 245666666
Q ss_pred cchhcc
Q 005628 612 ANVGLY 617 (687)
Q Consensus 612 anvg~~ 617 (687)
+-++.|
T Consensus 662 aLl~ac 667 (857)
T PLN03077 662 ALLNAC 667 (857)
T ss_pred HHHHHH
Confidence 655544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.9e-47 Score=441.62 Aligned_cols=419 Identities=13% Similarity=0.062 Sum_probs=346.7
Q ss_pred cchHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005628 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (687)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (687)
....+|+..+. .+.+.++.+.|.+++..|...| +.||..+||.||++|++.|++++|.++|++|. .||
T Consensus 121 ~~~~t~~~ll~--a~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~ 188 (697)
T PLN03081 121 LPASTYDALVE--ACIALKSIRCVKAVYWHVESSG------FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERN 188 (697)
T ss_pred CCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCC
Confidence 45677888887 7778899999999999996654 56666999999999999999999999999996 489
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHH
Q 005628 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (687)
Q Consensus 226 ~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~ 304 (687)
.++||+||.+|+ +.|++++|.++|. +|... |+. |..||+++|.+ +++.|.++.+.
T Consensus 189 ~~t~n~li~~~~----------~~g~~~~A~~lf~-------~M~~~-g~~p~~~t~~~ll~a------~~~~~~~~~~~ 244 (697)
T PLN03081 189 LASWGTIIGGLV----------DAGNYREAFALFR-------EMWED-GSDAEPRTFVVMLRA------SAGLGSARAGQ 244 (697)
T ss_pred eeeHHHHHHHHH----------HCcCHHHHHHHHH-------HHHHh-CCCCChhhHHHHHHH------HhcCCcHHHHH
Confidence 999999999999 8999999999994 88876 777 89999999999 99999999999
Q ss_pred HHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHH
Q 005628 305 STFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (687)
Q Consensus 305 ~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (687)
+++..|.+.|+.||.++|+ .|+++|+ ++|..+|++|.. +|+++||+ ||.+|++.|+.++|.++|++|.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n--~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~-li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSC--ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNS-MLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHhCCCccceeHH--HHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHH-HHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999 9999998 456779999864 69999999 9999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 380 ~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
+.|+.||.+||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||++||+.|++++|.++|++|. .||.++
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 489999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHH-HHHHHcCHHHHHhhcccchhhHHHHHhhhcCCccccccc
Q 005628 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536 (687)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~ 536 (687)
||+||.+|++.|+.++|.++|++|... |+.|+ ||+. |.++++.|. +++|.+ +|+.|..
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~-------------~~~a~~----~f~~m~~ 454 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGL-------------SEQGWE----IFQSMSE 454 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCc-------------HHHHHH----HHHHHHH
Confidence 999999999999999999999999999 77777 8888 666666664 556666 8999975
Q ss_pred -CCCCccEEEeeeecCCCcccccccccc-----c--ccCCHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHhhcCCccEE
Q 005628 537 -LGKGKWIVSHTTVGGDALCKCCGEKLA-----I--IDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608 (687)
Q Consensus 537 -~g~~p~~vt~t~vl~~g~C~~~~~~L~-----~--~~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~~yd~v 608 (687)
.|+.|+..+| +.+++++|+.|....+ . +..+...+.. .+......+........+++.++ ..|-++.
T Consensus 455 ~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~---Ll~a~~~~g~~~~a~~~~~~l~~-~~p~~~~ 529 (697)
T PLN03081 455 NHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA---LLTACRIHKNLELGRLAAEKLYG-MGPEKLN 529 (697)
T ss_pred hcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHcCCcHHHHHHHHHHhC-CCCCCCc
Confidence 6999999999 8999999999864321 1 2222333333 33344444544444444555442 2333322
Q ss_pred EeccchhcccCCCCChhHHHHHHHHHHh
Q 005628 609 VDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (687)
Q Consensus 609 IDGanvg~~~~~~~~~~~l~~vv~~l~~ 636 (687)
..-+.+..|...| .+.....+.+.+.+
T Consensus 530 ~y~~L~~~y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 530 NYVVLLNLYNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred chHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 2222233454443 24444455555544
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=2.1e-15 Score=164.82 Aligned_cols=276 Identities=15% Similarity=0.042 Sum_probs=210.9
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd---~~tyn~Ll~~~~~ 238 (687)
..++.++|...|..+.+.. +.+..+|..+...+.+.|++++|+.+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 4578889999999996532 12346899999999999999999999999987643332 356788888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
+.|+.++|..+|. ++... .-.+..+++.++.. +.+.|++++|..+|+.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55442 22256679999999 9999999999999999987653222
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
.... ...|.. +...+.+.|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 176 ~~~~----------------------------~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 176 RVEI----------------------------AHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred hHHH----------------------------HHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 1100 011223 6667888999999999999988753 234567888889999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
+.|++++|.++|+++...+-.....+++.++.+|++.|+.++|...++.+.+. .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999887532222466888999999999999999999998875 4777777889999999999999999
Q ss_pred HHHHHHhccCCCChhHHHH-HHHHH
Q 005628 479 LLHKLRTSVRKVSPSTADV-IAKWF 502 (687)
Q Consensus 479 ll~~M~~~~~g~~p~t~~~-I~~~~ 502 (687)
+|+++... .+...++.. +..++
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhh
Confidence 99988877 444445554 44443
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.60 E-value=9e-14 Score=151.89 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=213.6
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|..+++.+...+ +.........|..+...|.+.|++++|+.+|+++.+. -+++..+++.+...|.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~- 152 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQ- 152 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH-
Confidence 4457889999999999986532 1101112357889999999999999999999999865 3456789999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCC-c----cchhccccccccccccccCCChhhHHHHHHHHHhc
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-N----GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d-~----~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (687)
+.|++++|.+.+. .+... +-.+ . ..|..+... +.+.|++++|..+|+++.+.
T Consensus 153 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 153 ---------QEKDWQKAIDVAE-------RLEKL-GGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred ---------HhchHHHHHHHHH-------HHHHh-cCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 8899999999995 44432 2111 1 124556666 78899999999999998875
Q ss_pred CCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005628 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (687)
Q Consensus 314 g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~L 393 (687)
. |+.. ..+.. +...|.+.|++++|.++|+++...+......+++.+
T Consensus 210 ~--p~~~-------------------------------~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 210 D--PQCV-------------------------------RASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred C--cCCH-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 2 3321 12223 778899999999999999999976433335678999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---c
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---A 470 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~ 470 (687)
+.+|++.|++++|...++.+.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999876 478888899999999999999999999998875 6999999999999886 5
Q ss_pred CChHHHHHHHHHHHhccCCCChh
Q 005628 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|+.+++..+|++|.++...+.|+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999984455555
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.45 E-value=1.2e-11 Score=148.59 Aligned_cols=310 Identities=11% Similarity=0.010 Sum_probs=202.9
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
....++.++|.+.|+.+..... + ....+..++..+.+.|++++|+++++.+... .+++..+|+.+...|.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 476 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDP--E-----LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-- 476 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCC--c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--
Confidence 3466778888888888754321 1 1245566777888888888888888888753 4456777888888877
Q ss_pred ccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (687)
..|+.++|...|. ++... .-.+...+..+... +...|++++|..+|+++..... .+.
T Consensus 477 --------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~-~~~ 533 (899)
T TIGR02917 477 --------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTIDP-KNL 533 (899)
T ss_pred --------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCc-CcH
Confidence 7788888888884 33321 11134445666666 7778888888888888776531 123
Q ss_pred cccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 320 HMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 320 ~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
.++. .+...+. ..|..++..+.... +.+...+.. +...|.+.|++++|.++++++.... +.+..+|..+.
T Consensus 534 ~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 534 RAIL--ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA-LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH-HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 3333 3333332 33444555544332 223344444 7778888888888888888887643 45677788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
..|.+.|++++|...|+.+.+.. +.+...|..+...+.+.|+.++|..+|+.+.+.. +.+..+|..+...+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888877653 2345667777888888888888888888877642 334677888888888888888
Q ss_pred HHHHHHHHHHhccCCCChh-HHHH-HHHHHcCHHHHHhh
Q 005628 475 RVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 475 ~A~~ll~~M~~~~~g~~p~-t~~~-I~~~~~~~~~~~a~ 511 (687)
+|..+++.+... .+... .+.. ...++..+...+|.
T Consensus 687 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 687 SAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 888888888776 33222 3333 44455555544333
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=2.5e-11 Score=145.75 Aligned_cols=282 Identities=12% Similarity=-0.019 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..|..+...|.+.|++++|+..|+.+.+.. +.+...+..+...+. ..|+.++|...|. ++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 344444444444444444444444444321 122333444444444 4455555555552 2221
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccC
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g 346 (687)
. .-.+..+|..+... +...|++++|..+++.|.+... ++...+. .+...+. ..|...+..+...+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1 11133445555555 5555555555555555555431 1222222 2222221 23333444444332
Q ss_pred CCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
|+..++.. +...+.+.|+.++|.+.++++.... +.+...++.+...|.+.|++++|..+|+++.+.. +++...|+
T Consensus 734 --~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 734 --PSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred --CCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 33334444 5566666666666666666666542 3455666666666666666666666666666543 34555666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-ChhHHH-HHHHHHcC
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTAD-VIAKWFNS 504 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~~-~I~~~~~~ 504 (687)
.+...+.+.|+ .+|..+++.+.+.. .-+..++..+...+...|++++|..+|+++.+. ++ .+.++. ....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 66666666666 66666666665542 223445556666677777777777777777766 33 333433 35556655
Q ss_pred HHHHHh
Q 005628 505 KEAARL 510 (687)
Q Consensus 505 ~~~~~a 510 (687)
|...+|
T Consensus 885 g~~~~A 890 (899)
T TIGR02917 885 GRKAEA 890 (899)
T ss_pred CCHHHH
Confidence 554333
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=4.2e-13 Score=101.22 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
||+++||++|++|++.|++++|+++|++|++.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999999999999999999999999998
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=3.8e-13 Score=101.46 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
||+++||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2.7e-10 Score=118.09 Aligned_cols=281 Identities=14% Similarity=0.062 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC---------c----------ccCCCCch
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV---------V----------KPAKSGSG 252 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~---------~----------~~~k~g~~ 252 (687)
.+=|.|+.. ...|.+.++.-+|+.|...|+..+...--.|+..-|-.+... + .-=|.|.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 355666654 457899999999999999999988888888887766322110 0 01134443
Q ss_pred hhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcc
Q 005628 253 MRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR 331 (687)
Q Consensus 253 ~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~ 331 (687)
.+ -+|. -.+ ..-||.+||.| +|+--.++.|.++++|-.....+-+..+|| .+|.+-
T Consensus 196 Ad--L~~E-------------~~PKT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN--~lI~~~ 252 (625)
T KOG4422|consen 196 AD--LLFE-------------TLPKTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN--GLIGAS 252 (625)
T ss_pred HH--HHHh-------------hcCCCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--hhhhHH
Confidence 33 3332 222 56789999999 999999999999999999988899999999 888776
Q ss_pred c-cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-
Q 005628 332 S-NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM- 405 (687)
Q Consensus 332 ~-~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~- 405 (687)
. ...+.+..+|....+.||..|+|+ ++.+..+.|+++. |.+++.+|++-|+.|...+|.-+|.-+++.++..+
T Consensus 253 S~~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 253 SYSVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhhccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 6 456789999999999999999999 9999999997765 56889999999999999999999999999988754
Q ss_pred HHHHHHHHHH----cCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhc
Q 005628 406 AFDMVKRMKS----LGINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE---PELEALLRVSVEA 470 (687)
Q Consensus 406 A~~l~~~M~~----~g~~P----d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~---~ty~~Li~~~~~~ 470 (687)
|..++.++.. ..++| |..-|...++.|.+..+.+.|.++..-.... -+.|+. .-|.-+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444442 23444 4456778889999999999999998766543 133432 3466788888999
Q ss_pred CChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 471 GKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
...+.-+..++.|.-+..++.+-+...
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHH
Confidence 999999999999998855555554443
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.3e-09 Score=111.22 Aligned_cols=268 Identities=11% Similarity=0.034 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
.||.+||.++||--..+.|.++|.+-.....+.+..+||.||.+-+ +....++.. ||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------------~~~~K~Lv~-------EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------------YSVGKKLVA-------EMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------------hhccHHHHH-------HHHH
Confidence 7999999999999999999999999999888999999999998876 233356663 7776
Q ss_pred cCCCC-CccchhccccccccccccccCCChhhH----HHHHHHHHhcCCCCCccccchhhHhhccccccCC---------
Q 005628 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG--------- 337 (687)
Q Consensus 272 ~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A----~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~--------- 337 (687)
. .+. |..|+|+++.+ ..+.|+++.| .+++.||++.|+.|...+|. .+|.-+|.+...
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhcccCCchhhhHHHHH
Confidence 6 565 89999999999 9999988654 67889999999999999998 777777733221
Q ss_pred -CcchhcccCCCCChhhhHHH---HHHHHHhhccHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHHcCChHHH
Q 005628 338 -PDDQSRKKDWSIDNQDADEI---RLSEDAKKYAFQRGFEIYEKMCLD----EVPMNE---ASLTAVGRMAMSMGDGDMA 406 (687)
Q Consensus 338 -~~~~m~~~g~~pd~~tyn~~---lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~---~tyn~LI~~~~~~g~~~~A 406 (687)
+.+++..+.++|-..+.|-. -|+-|.+..+.+-|.++..-++.. -+.|+. +=|.-+....|.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444454433322221 233333444444444444333321 011221 1233444444444444444
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC----------------------------------
Q 005628 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---------------------------------- 452 (687)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------------- 452 (687)
...++.|.-.-+-|+..+-..++.+.--.|.++-.-++|.+|...|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 4444444444334444444444444444444444433333333222
Q ss_pred --------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005628 453 --------------------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (687)
Q Consensus 453 --------------------v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (687)
..-.....+.+.-.+.+.|..++|.++|.-+..++..
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 1112233455666678999999999999988655433
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.05 E-value=1.7e-09 Score=120.91 Aligned_cols=256 Identities=13% Similarity=0.072 Sum_probs=164.5
Q ss_pred hhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC
Q 005628 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (687)
Q Consensus 171 ~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g 250 (687)
.++-.|...|+.|++ +||.++|.-||..|+.+.|- +|..|+-..+..+...|+.++.+.. ..+
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 455677777777777 99999999999999999999 9999998888889999999999888 455
Q ss_pred chhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhc--CCCCCccccchh---
Q 005628 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--GQFSNGHMKLNS--- 325 (687)
Q Consensus 251 ~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~--g~~Pd~~ty~~~--- 325 (687)
+.+.+.+.. .-||+.|+.+ |...|++..-..+=+.|... ...|+.+--...
T Consensus 74 d~Enpkep~------------------aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEPL------------------ADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCCc------------------hhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 554443222 3579999999 99999876522222223221 011111000000
Q ss_pred hHhhccc---ccc---------CCCcchhcccCCCCChhhhHHHHHHHHHhhc--cHHHHHHHHHHHHhCCC-CCCHHHH
Q 005628 326 QLLDGRS---NLE---------RGPDDQSRKKDWSIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMCLDEV-PMNEASL 390 (687)
Q Consensus 326 ~li~g~~---~~a---------~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~gi-~pd~~ty 390 (687)
..++++- ..+ +.+++...+.+..-.+..|+....- +.+.. ......++.+ |.+.+. .|+..+|
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~-~cksl~e~~~s~~l 207 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLN-MCKSLVEAPTSETL 207 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHH-HHHHhhcCCChHHH
Confidence 1111111 000 0111222221111011111110000 01110 1111222222 222222 5999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
.+++++-..+|+++.|..++.+|++.|+..+..-|-+||-+ .++..-+..+...|.+.||.|+..||.-.+..+.++
T Consensus 208 ~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 208 HAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 99999999999999999999999999999999989999877 888899999999999999999999998887777765
Q ss_pred CC
Q 005628 471 GK 472 (687)
Q Consensus 471 g~ 472 (687)
|.
T Consensus 285 ~~ 286 (1088)
T KOG4318|consen 285 GQ 286 (1088)
T ss_pred hh
Confidence 54
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=3.2e-07 Score=106.98 Aligned_cols=290 Identities=10% Similarity=-0.092 Sum_probs=184.6
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~ 237 (687)
.....++..+|..+++.....-... | ..+..+..++...|++++|+..|+++... .|+ ...+..+-..+.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~-----~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNG-----R--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCc-----h--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3347788889999988885432211 2 23444445666788999999999888764 343 445555666666
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 6788888888884 33221 11144457777777 888888888888888776543222
Q ss_pred Cccccch-hhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005628 318 NGHMKLN-SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (687)
Q Consensus 318 d~~ty~~-~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~ 396 (687)
....+.. ..+..+--.+|...+..+....-.++...+.. +...+.+.|+.++|...|++..... +-+...+..+-..
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLA 255 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1111110 00111111334444444433321222223322 5567778888888888888887654 3356677778888
Q ss_pred HHHcCChHH----HHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005628 397 AMSMGDGDM----AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 397 ~~~~g~~~~----A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (687)
|...|++++ |...|+..... .| +...+..+-..+.+.|+.++|...+++..+.. .-+...+..+-..|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 888888875 67788777654 34 34577777888888888888888888877643 223455666777888888
Q ss_pred ChHHHHHHHHHHHhc
Q 005628 472 KGDRVYYLLHKLRTS 486 (687)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (687)
++++|...|+++...
T Consensus 333 ~~~eA~~~l~~al~~ 347 (656)
T PRK15174 333 QYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888888766
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.82 E-value=1.3e-06 Score=102.06 Aligned_cols=281 Identities=7% Similarity=-0.050 Sum_probs=177.6
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~~~~~~ 240 (687)
..++.++|.+.|+.+.... |+ +...|..+-..+.+.|++++|+..|+++... .| +...+..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---
Confidence 3566777777777764321 11 1245555666667777777777777777643 23 3445556666666
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.++|...+. .+... .-.+...|..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 5667777766663 22211 11111122111 22 455677777777777665543222222
Q ss_pred ccchhhHhhccc-----cccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHH----HHHHHHHHHhCCCCCCHHHH
Q 005628 321 MKLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 321 ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~ty 390 (687)
.+. .+...+. .+|...+...... .|+ ...+.. +-..|...|++++ |...|++..... +.+...+
T Consensus 214 ~~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~ 287 (656)
T PRK15174 214 SAG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIV 287 (656)
T ss_pred HHH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHH
Confidence 221 1111111 3333344444432 233 334444 7788889999886 899999988753 3356789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSV 468 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t-y~~Li~~~~ 468 (687)
..+...+.+.|++++|...+++.... .|+ ...+..+-..|.+.|++++|...|+.+.+. .|+... +..+..++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 99999999999999999999998865 354 345677788899999999999999998875 355433 334566789
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.++|...|++....
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998876
No 18
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=4.5e-09 Score=71.96 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005628 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (687)
Q Consensus 382 gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M 413 (687)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=5.7e-09 Score=71.45 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55556666666666666666666666555555
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.71 E-value=3.2e-07 Score=103.17 Aligned_cols=243 Identities=13% Similarity=0.053 Sum_probs=161.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-Cccchhcccccccc
Q 005628 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (687)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~ 290 (687)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|..+ ..+ +...|+.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 35567888999999999999999999 788888888 884 23333 455 67779999999
Q ss_pred ccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCC-cch-------------------------hc-
Q 005628 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP-DDQ-------------------------SR- 343 (687)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~-~~~-------------------------m~- 343 (687)
....++.+.+. .|-.-||+ .|..+|...+.-. |+. |.
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 99999888876 57777777 6666665221110 100 00
Q ss_pred --ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005628 344 --KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (687)
Q Consensus 344 --~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (687)
..+.-||..+ .|--..-.|.++.+.+++..|.... ..|-.+ .|+-+... ..-..++....+...-.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCC
Confidence 0111222211 2222333444444444444432210 111111 12222221 222334444444331159
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHH-
Q 005628 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV- 497 (687)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~- 497 (687)
+..+|.+++++..-+|+++.|..++.+|.++|+..+..-|-.||-+ .+...-+..+++-|.+. |+.|+ |+..
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ady 277 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADY 277 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 9999999999999999999999999999999999999988888876 88888999999999999 77777 8876
Q ss_pred HHHHHcCHHH
Q 005628 498 IAKWFNSKEA 507 (687)
Q Consensus 498 I~~~~~~~~~ 507 (687)
++..+..+..
T Consensus 278 vip~l~N~~t 287 (1088)
T KOG4318|consen 278 VIPQLSNGQT 287 (1088)
T ss_pred HHhhhcchhh
Confidence 7777775553
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.65 E-value=3.8e-06 Score=97.75 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=186.5
Q ss_pred cCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 005628 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (687)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~~~~~ 241 (687)
++.++|.+.|+...+.+ ...| +...|+.+-..+...|++++|+..|++.... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 45678888888886543 1223 3467788888888999999999999998864 455 456777777777
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+. .|+..
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~~- 433 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDFI- 433 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccCH-
Confidence 7889999999995 33322 21244557777667 88899999999999887664 23321
Q ss_pred cchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005628 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (687)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g 401 (687)
..|.. +-..+.+.|++++|...|++..... +-+...|+.+-..+...|
T Consensus 434 ------------------------------~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 434 ------------------------------FSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 12223 6677889999999999999988642 345788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCc--c------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005628 402 DGDMAFDMVKRMKSLGINPRL--R------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~--~------ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (687)
++++|.+.|+...... |+. . .++..+..+-..|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999876542 321 1 12222233444699999999999987754 23445788999999999999
Q ss_pred HHHHHHHHHHHhc
Q 005628 474 DRVYYLLHKLRTS 486 (687)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (687)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.60 E-value=2.4e-07 Score=96.67 Aligned_cols=255 Identities=16% Similarity=0.098 Sum_probs=104.4
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV-ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~-lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
+.++.++|+++++.-.... .+|+-..|-. +-..+-..++.+.|++.|+++...+-. +...|..++.. .
T Consensus 20 ~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--- 88 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c---
Confidence 6788999999996542211 1232234444 444555578999999999999876543 55567777766 4
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..++.++|.+++. +.-+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 -------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~-- 144 (280)
T PF13429_consen 89 -------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD-- 144 (280)
T ss_dssp ---------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred -------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC--
Confidence 5677888888773 22111 1244446667777 8888999999999988765321111
Q ss_pred ccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 005628 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMS 399 (687)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~ 399 (687)
+...|.. +-..+.+.|+.++|.++|++..+.. | |....+.++..+..
T Consensus 145 -----------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 145 -----------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLID 192 (280)
T ss_dssp ------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -----------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 1112223 5567788999999999999988753 5 47788999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (687)
.|+.+++.++++...... ..|...+..+-.+|...|+.++|...|+...... +-|..+...+-+++...|+.++|..+
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 999999999998887763 5566778889999999999999999999987642 33778888899999999999999998
Q ss_pred HHHHHh
Q 005628 480 LHKLRT 485 (687)
Q Consensus 480 l~~M~~ 485 (687)
.++...
T Consensus 271 ~~~~~~ 276 (280)
T PF13429_consen 271 RRQALR 276 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 876543
No 23
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=98.59 E-value=1.1e-08 Score=96.62 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred EEEeccchhcc--cCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChHHHHHHHHHHhCCceeeCCCCCC
Q 005628 607 AVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSN 684 (687)
Q Consensus 607 ~vIDGanvg~~--~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~~n 684 (687)
+||||+|||++ ++..|+..+|..+|++|.+ .|..+++|++..+........+...+++++|.++|.||.||++++
T Consensus 5 VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~~ 81 (155)
T PF11977_consen 5 VVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGSN 81 (155)
T ss_dssp EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEEE
T ss_pred EEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCCC
Confidence 89999999874 3336899999999999999 478889999988854333456777889999999999999999998
Q ss_pred --------CCC
Q 005628 685 --------DDW 687 (687)
Q Consensus 685 --------DDw 687 (687)
|||
T Consensus 82 ~g~~~~~ydD~ 92 (155)
T PF11977_consen 82 YGSRSRNYDDR 92 (155)
T ss_dssp TTEEEEB-HHH
T ss_pred CCCcccccchH
Confidence 987
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.57 E-value=3.2e-05 Score=76.63 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=96.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
+...|...|++++|.+.|++...... ......+..+...+...|++++|...+.+..... ..+...|..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 55667788888888888888876432 2234566777778888899999999988877652 223567778888888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.++|.+.+++..+. ...+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888776 3446677777888888889999988888777654
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.49 E-value=9e-07 Score=92.32 Aligned_cols=251 Identities=15% Similarity=0.083 Sum_probs=106.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC
Q 005628 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (687)
Q Consensus 197 lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~ 276 (687)
+-..+.+.|++++|+++++.-....-.|+...|-.++.-++. ..++.+.|...+. ++... +-.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~~ 76 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-ccc
Confidence 356677899999999999766554435666666666555553 5677888888884 44332 211
Q ss_pred CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHH
Q 005628 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (687)
Q Consensus 277 d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (687)
+...|..++. +...+++++|..++.+..++. ++... +..
T Consensus 77 ~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~~--------------------------------l~~ 115 (280)
T PF13429_consen 77 NPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPRY--------------------------------LLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-------ccccccccccccccccccccc--cccch--------------------------------hhH
Confidence 2222433333 347788888888776654432 22211 223
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHh
Q 005628 357 IRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (687)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~ 434 (687)
++..+.+.++++++.+++++.... ....+...|..+...+.+.|+.++|.+.+++..+. .|+ ....+.++..+..
T Consensus 116 -~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 116 -ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 666788899999999999998754 34578889999999999999999999999998875 364 6778889999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-ChhHHHH-HHHHHcCHHHHHhh
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~~~-I~~~~~~~~~~~a~ 511 (687)
.|+.+++.++++...+.. ..|...+..+-.+|...|+.++|..+|++.... .+ +|.+... -..+...|...+|.
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 999999999998887764 556667889999999999999999999998886 43 3333322 44455555544443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.46 E-value=8e-05 Score=88.75 Aligned_cols=287 Identities=8% Similarity=-0.014 Sum_probs=165.7
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
...++..+|.++++..... . +.+...+..+...+.+.|++++|+..+++.... -+.+.. +..+-.++.
T Consensus 60 ~~~g~~~~A~~~~~~al~~--~-----P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~--- 127 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSL--E-----PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK--- 127 (765)
T ss_pred HHcCCHHHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH---
Confidence 3556677777777775332 1 112244556666677777777777777777654 222333 555555555
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.++|...+. +.... .-.+...+..+... +...+..+.|+..++.... .|+..
T Consensus 128 -------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~~ 183 (765)
T PRK10049 128 -------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAEK 183 (765)
T ss_pred -------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHHH
Confidence 5667777777763 22221 11122233334444 5556666666666654332 22210
Q ss_pred cc----chhhHhhcc-------------ccccCCCcchhccc-CCCCChh-hhHHH---HHHHHHhhccHHHHHHHHHHH
Q 005628 321 MK----LNSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEI---RLSEDAKKYAFQRGFEIYEKM 378 (687)
Q Consensus 321 ty----~~~~li~g~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~---lI~~~~k~g~~~~A~~lf~~M 378 (687)
.. ....++... .+.|...+..+... .-.|+.. .+... .+..+...|++++|...|+++
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 00 000011000 01122233333322 1222221 11111 123445778999999999999
Q ss_pred HhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 379 CLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 379 ~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
.+.+.. |+-. --.+...|...|++++|..+|+.+.... |. ...+..|..++...|+.++|.++++.+.+..
T Consensus 264 l~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 264 KAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred hccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 987642 4322 2225678999999999999999987542 32 2346667778899999999999999998652
Q ss_pred -----------CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 -----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 -----------v~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.|+. ..+..+...+...|+.++|+.+|+++...
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12342 34556777888999999999999999887
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=2e-05 Score=86.55 Aligned_cols=276 Identities=7% Similarity=-0.017 Sum_probs=178.8
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcc
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL--LYLCSSAA 240 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~L--l~~~~~~~ 240 (687)
.|+...|.+....-.+ ....|. ..|-..-.+..+.|+++.|...|.++.+ ..|+...+-.+ ...+.
T Consensus 97 eGd~~~A~k~l~~~~~------~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD------HAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHh------cccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 4788888877776522 111233 4454445555899999999999999975 45665544322 33444
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.+.|...++ ++.+. .-.+...+..+... |.+.|++++|..++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 22255557778888 999999999999999999987654331
Q ss_pred -------ccchhhHhhcc-ccccC----CCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHH
Q 005628 321 -------MKLNSQLLDGR-SNLER----GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (687)
Q Consensus 321 -------ty~~~~li~g~-~~~a~----~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (687)
+|. .++.-. ..... .++..+.. ..+.+...... +...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~-~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVA-MAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 111100 00000 01111111 11112223333 667888888888888888887763 44442
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
-.++.+.+..++.+++.+..+...+. .||.. .+.++=..|.+.+++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 12344445568888888888877765 24443 4666667778888888888888888764 58888888888888
Q ss_pred HhcCChHHHHHHHHHH
Q 005628 468 VEAGKGDRVYYLLHKL 483 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (687)
.+.|+.++|.+++++=
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888888888887754
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.40 E-value=4.1e-05 Score=95.41 Aligned_cols=294 Identities=11% Similarity=-0.002 Sum_probs=176.4
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
..+.++.++|.+.|+...... | .+...+..+-..+.+.|++++|++.|++..+.. +.+...+..+...|...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 447789999999999986531 1 234677788899999999999999999998642 22333444443333210
Q ss_pred ccC--------------------------------CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccc
Q 005628 240 AVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287 (687)
Q Consensus 240 ~~~--------------------------------~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~ 287 (687)
... +..+...|+.++|...|. +.... .-.+...+..+-..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH
Confidence 000 000114678888888884 33221 11133345556666
Q ss_pred cccccccccCCChhhHHHHHHHHHhcCCCCCccc--cchhhHhhccc--cccCCCcchhcccCCCCChhh---------h
Q 005628 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD---------A 354 (687)
Q Consensus 288 ~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t--y~~~~li~g~~--~~a~~~~~~m~~~g~~pd~~t---------y 354 (687)
+.+.|++++|...|++..+. .|+... |..+.+..... ..|...+..+......++... +
T Consensus 505 ------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 ------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred ------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 88999999999999998764 343321 21111111100 122222222222111111111 1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005628 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (687)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~ 434 (687)
.. +...+...|+.++|.++++. .+.+...+..|-..+.+.|+.++|++.|+...+.. +-+...+..+...|..
T Consensus 577 l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 11 34556677778888877762 23455566677777778888888888887777652 2245667777777888
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+.++|.++++...+. .| +...+..+-..+...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888766543 23 3445556666777788888888888877665
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.32 E-value=0.00011 Score=85.43 Aligned_cols=245 Identities=13% Similarity=0.005 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchh
Q 005628 205 GDVMGAIRLYDKAQREG-IKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (687)
Q Consensus 205 g~~~~A~~lf~~M~~~G-i~pd-~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn 282 (687)
+++++|++.|+.....+ ..|+ ...|+.+-..+. ..|+.++|...|. +.... .-.+...|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~----------~~g~~~eA~~~~~-------kal~l-~P~~~~~~~ 369 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC----------LKGKHLEALADLS-------KSIEL-DPRVTQSYI 369 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-CCCcHHHHH
Confidence 67899999999998765 3443 445666666666 6899999999995 22221 111233466
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHH
Q 005628 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (687)
Q Consensus 283 ~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (687)
.+-.. +...|++++|...|++..+. .|+. ...|.. +-..|
T Consensus 370 ~la~~------~~~~g~~~eA~~~~~~al~~--~p~~-------------------------------~~~~~~-lg~~~ 409 (615)
T TIGR00990 370 KRASM------NLELGDPDKAEEDFDKALKL--NSED-------------------------------PDIYYH-RAQLH 409 (615)
T ss_pred HHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHHH
Confidence 66666 77899999999999987664 2321 223334 66778
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
...|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++.... ..-+...|+.+-..+...|++++|.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHH
Confidence 88999999999999998754 235677888888999999999999999998764 2224578888899999999999999
Q ss_pred HHHHHHHHCCCC-----CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHHHHcCHHHHHhh
Q 005628 443 SVEEHMLEHGVY-----PEE-PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 443 ~l~~~M~~~gv~-----pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~-I~~~~~~~~~~~a~ 511 (687)
+.|+...+..-. ++. ..++..+..+...|++++|..++++.... .+... .+.. ...+...|...+|.
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999998764321 111 12222233344579999999999987766 33222 3333 44444555444443
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00011 Score=74.75 Aligned_cols=245 Identities=16% Similarity=0.116 Sum_probs=134.5
Q ss_pred ccCccchHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005628 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (687)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~-tyn~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (687)
.+....+..+|-.++ ...++|.++|-+|.+ ..|..+ +--+|=+-|-+.|.++.|++++..+.++
T Consensus 34 ~lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s 98 (389)
T COG2956 34 RLSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES 98 (389)
T ss_pred hccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 344555666677666 567889999999954 122222 3334556677889999999999988764
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCCh
Q 005628 221 GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF 300 (687)
Q Consensus 221 Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~ 300 (687)
||. |++-=+.+.-.. +.+|...|-+|+|+.+|
T Consensus 99 ---pdl-T~~qr~lAl~qL---~~Dym~aGl~DRAE~~f----------------------------------------- 130 (389)
T COG2956 99 ---PDL-TFEQRLLALQQL---GRDYMAAGLLDRAEDIF----------------------------------------- 130 (389)
T ss_pred ---CCC-chHHHHHHHHHH---HHHHHHhhhhhHHHHHH-----------------------------------------
Confidence 432 333333222210 01222455555555555
Q ss_pred hhHHHHHHHHHhcCC-CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHH
Q 005628 301 DDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (687)
Q Consensus 301 ~~A~~lf~eM~~~g~-~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (687)
..+.+.|. .++.- -.|+.-|-+..++++|.++-+++.
T Consensus 131 -------~~L~de~efa~~Al-----------------------------------qqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 131 -------NQLVDEGEFAEGAL-----------------------------------QQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred -------HHHhcchhhhHHHH-----------------------------------HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333210 00000 015556666666666666666666
Q ss_pred hCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 380 LDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 380 ~~gi~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
+.|-.+.- .-|.-|...+....+++.|..+++.-.+.. |+.+--++++ +.+...|+.+.|.+.++...+.+..
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 55433321 123333334444566666666666554432 3333333333 3455567777777777766666555
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.-..+...|..+|...|+.++....+.++.+...|+.+.
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 555566666777777777777777776666664454444
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.32 E-value=7.2e-05 Score=82.54 Aligned_cols=283 Identities=9% Similarity=-0.027 Sum_probs=174.8
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~--tyn~Ll~~~~~ 238 (687)
..|+...|.+.+....+. .|+ ...|-..-.+..+.|+.+.|.+.|.+..+.- |+.. .--+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568899999999776321 233 2334444567778899999999999987543 4432 3333345555
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|+.+.|...+. ++.+. .-.+...+-.+... +.+.|++++|.+++....+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6789999999994 55553 32255556677777 9999999999999999999875433
Q ss_pred ccccc------hhhHhhccccccCCCcchhcccCC---CCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH
Q 005628 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDW---SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (687)
Q Consensus 319 ~~ty~------~~~li~g~~~~a~~~~~~m~~~g~---~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (687)
..... .+.+-.+....+...+..+...-- ..+...+-. +...+...|+.++|.+++++..+.. ||...
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 32110 000111111111112222221110 013334444 6677888888888888888887753 33321
Q ss_pred H-HHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 390 L-TAVGRM--AMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 390 y-n~LI~~--~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
. -.++.. ....++.+.+.+.++...+. .|+-. ...++=..|.+.|++++|.+.|+........||...+..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 0 012222 23346677777777665543 34444 3335556667788888888888854444456888888888
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 005628 464 LRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M 483 (687)
-..+-+.|+.++|.+++++-
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888887763
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.25 E-value=4.1e-05 Score=83.53 Aligned_cols=282 Identities=11% Similarity=0.011 Sum_probs=180.9
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|+.+++.|++.. |+ .+..|--+-.++...|+.+.|...|.+..+ +.|+.+...+-+.-+-+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~-----fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PK-----FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--ch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4448899999999999997542 21 246899999999999999999999998875 46776665555544443
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|++++|..-+. .-++.+.+ =.+.|+-|=-. +...|++-.|..-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3577888877763 12222111 23457777666 77888888888888877654 333
Q ss_pred cc-cc-chhhHhhccccccCCCcchh-----cccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHH
Q 005628 319 GH-MK-LNSQLLDGRSNLERGPDDQS-----RKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EAS 389 (687)
Q Consensus 319 ~~-ty-~~~~li~g~~~~a~~~~~~m-----~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~t 389 (687)
-. .| |.+.+.. +.+.|+.. ......|+ .+.|.+ |-..|-..|.+|-|...|++-.+. .|+ ...
T Consensus 251 f~dAYiNLGnV~k-----e~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~A 322 (966)
T KOG4626|consen 251 FLDAYINLGNVYK-----EARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDA 322 (966)
T ss_pred chHHHhhHHHHHH-----HHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHH
Confidence 21 11 1111111 11111111 11233443 234444 555677778888888888877653 344 467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (687)
||.|-.++-..|++.+|.+.++..... +.-...+.+.|-..|...|.+++|..+|....+ +.|. ...+|-|-..|-
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH
Confidence 888888888888888888888776554 212235567777777888888888888776655 3444 345666777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 005628 469 EAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~ 485 (687)
+.|++++|..-+++-.+
T Consensus 400 qqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR 416 (966)
T ss_pred hcccHHHHHHHHHHHHh
Confidence 77888888777776554
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.22 E-value=0.00054 Score=81.75 Aligned_cols=290 Identities=10% Similarity=-0.037 Sum_probs=189.4
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~~ 238 (687)
+.+.++.++|...++...+. .| .+.. +..+-..+...|+.++|+..++++.+. .|+ ...+..+..++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-
Confidence 44788999999999998543 12 2234 888888999999999999999999875 344 444455666665
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccC----CCC----CccchhccccccccccccccCCCh---hhHHHHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~----g~~----d~~tyn~Li~~~~~~~~~~~~g~~---~~A~~lf 307 (687)
..|..+.|...+. ...... +.. .......+... ....+++ ++|...+
T Consensus 162 ---------~~~~~e~Al~~l~-------~~~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAID-------DANLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 5677788887774 111100 000 00001112222 3344455 7788888
Q ss_pred HHHHhc-CCCCCccc-cch------h-hHhhccccccCCCcchhcccCCC-CCh-hhhHHHHHHHHHhhccHHHHHHHHH
Q 005628 308 NEKENL-GQFSNGHM-KLN------S-QLLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIYE 376 (687)
Q Consensus 308 ~eM~~~-g~~Pd~~t-y~~------~-~li~g~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (687)
+.+.+. ...|+... +.. + .+..+-...|...|..+...+-. |+. ..+ +-..|...|++++|..+|+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHHH
Confidence 888754 33343321 110 0 11222225566677777766522 332 222 3467888999999999999
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCC---cchHHHHHHHHHhCCChH
Q 005628 377 KMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 377 ~M~~~gi~p---d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----------~~Pd---~~ty~~lI~~~~~~g~~~ 439 (687)
++....... ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 987643211 13456667778889999999999999887652 0122 123456677888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.++++++... .+-+...+..+...+...|++++|+..+++....
T Consensus 377 eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 377 QAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999998765 3445778888888999999999999999988876
No 34
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=1.7e-06 Score=59.09 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (687)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.18 E-value=0.00032 Score=84.75 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
+...|..+-.++.. |++.+|+..|.+.... .|+......+...+. ..|+.++|...|. ++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 44566666666665 8999999988877754 377554333344444 6899999999994 33
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (687)
... -++...+..+... +.+.|++++|...|++..+.. |+....
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 321 1122224444444 778999999999999887653 332111
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPA 428 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~l 428 (687)
+.. +...+.+.|++++|...|++..+. .|+...|..+-..+.+.|+.++|...++..... .|+. ..++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223334559999999999999865 467889999999999999999999999998775 3554 556666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..+...|+.++|.++++...+.. +-+...+..+-.++...|++++|+..|++....
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 678999999999999999988753 235677888999999999999999999998877
No 36
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.3e-06 Score=57.69 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.15 E-value=0.00016 Score=90.33 Aligned_cols=255 Identities=11% Similarity=0.019 Sum_probs=172.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g 274 (687)
.+...+...|++++|++.|++..+. .| +...+..+-..|. +.|+.++|...|. +.... .
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~----------~~G~~~~A~~~l~-------~al~~-~ 525 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLR----------QAGQRSQADALMR-------RLAQQ-K 525 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-C
Confidence 3445677889999999999999865 34 4566677777787 7899999999995 33332 1
Q ss_pred CCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchh-------hHhhcc-----ccccCCCcchh
Q 005628 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS-------QLLDGR-----SNLERGPDDQS 342 (687)
Q Consensus 275 ~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~-------~li~g~-----~~~a~~~~~~m 342 (687)
-.+...+..+.-. +...++.++|...++.+......++...+... .+.+.+ -.+|..++.
T Consensus 526 P~~~~~~~a~al~------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-- 597 (1157)
T PRK11447 526 PNDPEQVYAYGLY------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-- 597 (1157)
T ss_pred CCCHHHHHHHHHH------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 1122222222222 55678899999988876543222222111100 001111 122222222
Q ss_pred cccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Q 005628 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (687)
Q Consensus 343 ~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd- 421 (687)
..+.+...+.. +-..|.+.|+.++|.+.|++..... +-+...+..+...|...|+.++|.+.++..... .|+
T Consensus 598 ---~~p~~~~~~~~-La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~ 670 (1157)
T PRK11447 598 ---QQPPSTRIDLT-LADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDS 670 (1157)
T ss_pred ---hCCCCchHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCC
Confidence 11223333444 7788999999999999999998864 346889999999999999999999999987654 344
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~p---d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
...+..+-..+...|+.++|.++++.+....- .| +...+..+-..+...|+.++|...|++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556677788899999999999999987532 22 234666667888999999999999998764
No 38
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=3.9e-06 Score=57.18 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p 224 (687)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.07 E-value=0.00069 Score=80.30 Aligned_cols=128 Identities=13% Similarity=0.008 Sum_probs=101.7
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCcchHHHHHHHHH
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFC 433 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~ 433 (687)
+-++.+.|++.++.+.|+.|...|.+.-..+--++.++|...+.+++|..+++...... ..++......|..+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 45677889999999999999998876556788899999999999999999999986542 2234444688999999
Q ss_pred hCCChHHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHG-------------VYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~g-------------v~pd~~t-y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+++++|..+++.+.+.- -.||-.. +..++..+...|++.+|+++++++...
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998731 1123333 344566778999999999999999877
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.04 E-value=0.00052 Score=67.89 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=125.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+.. |+.. ..+.. +...|...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~-------------------------------~~~~~-la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDY-------------------------------LAYLA-LALYYQQLGELEKAED 86 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccH-------------------------------HHHHH-HHHHHHHcCCHHHHHH
Confidence 788999999999999886542 3321 12333 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
.|++..+.. +.+...+..+...+...|++++|...++........| ....+..+-..+...|+.++|...+++..+..
T Consensus 87 ~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999988764 3456788888999999999999999999988753222 34567777888999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...+..+...+...|++++|..++++....
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224667888999999999999999999998876
No 41
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=7.6e-06 Score=55.72 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (687)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.97 E-value=0.0015 Score=77.51 Aligned_cols=284 Identities=9% Similarity=-0.045 Sum_probs=187.5
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---Y 234 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~--~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll---~ 234 (687)
..+.|+...|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.. .|+...|..++ .
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 44778889999999998432 2331 233 88888889999999999999987 44333333333 3
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
.|. ..|+.++|.+++. ++.+. .-.|.-.+..|+.. +...++.++|+..+......
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 454 6799999999994 55543 22243445566666 88899999999999988765
Q ss_pred CCCCccccchhhHhhcc---c--cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHH-------------
Q 005628 315 QFSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE------------- 376 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~------------- 376 (687)
.|+...|- .+..-+ . ..|...+.++... .|+...+..-++..+.+.|-...|.++..
T Consensus 166 -dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 166 -DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred -CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 45544442 221111 1 1355566666664 46655444335566666654444443332
Q ss_pred -----------------------------------HHHhC-CCCCC-HHH-HHHH---HHHHHHcCChHHHHHHHHHHHH
Q 005628 377 -----------------------------------KMCLD-EVPMN-EAS-LTAV---GRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 377 -----------------------------------~M~~~-gi~pd-~~t-yn~L---I~~~~~~g~~~~A~~l~~~M~~ 415 (687)
.+... +-.|. ..- -.+. +-++.+.|+..++.+.++.|+.
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 22221 11122 111 1222 3367778899999999999998
Q ss_pred cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.-..+=-.+.++|...+..++|..+++.+.... ..++......|.-+|...+++++|..+++++.+.
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8764334466788899999999999999999886543 2345555788899999999999999999999884
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.93 E-value=0.0013 Score=79.57 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=165.3
Q ss_pred cCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 005628 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (687)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~ 243 (687)
++.++|...|..-... .|+......+...+.+.|++++|...|+++... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777888877776432 244344334445556899999999999997643 455555556666666
Q ss_pred cccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccc
Q 005628 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (687)
Q Consensus 244 ~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (687)
+.|+.++|...+. +.... ...+...+..+... ....|++++|...|++-.+. .|+.
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~---- 609 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSA---- 609 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCH----
Confidence 7899999999995 33222 11111112222222 33559999999999887654 2432
Q ss_pred hhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005628 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (687)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~ 403 (687)
..|.. +-..+.+.|+.++|.+.|++..... +-+...++.+-..+...|+.
T Consensus 610 ----------------------------~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 610 ----------------------------NAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ----------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 23334 6678899999999999999998764 33566788888899999999
Q ss_pred HHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 005628 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 404 ~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
++|..+++...+. .| +...+..+-.++...|++++|...|+...+. .|+. .+.-..-....+..+++.|.+-+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999988765 34 4567888888999999999999999999764 3543 222222333344444444444433
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.91 E-value=0.0026 Score=70.84 Aligned_cols=241 Identities=12% Similarity=0.003 Sum_probs=159.0
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQ----YHY 229 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g-~~P~~~t-yn~lI~~~~k~g~~~~A~~lf~~M~~~---Gi~pd~----~ty 229 (687)
.+...++.+.|..+|..-.+. +.+..| ..|.+.+ .+.+=..|...+++++|..+|+++..- .+-++. .|+
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 666788999999999986553 112222 2444332 333556788889999999999999732 222222 234
Q ss_pred HHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHH
Q 005628 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 230 n~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+.|=.+|+ +.|++++|...++ .|.+++..
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~ 315 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK 315 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH
Confidence 44444555 6666666666653 23333333
Q ss_pred HHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC---CCCCC
Q 005628 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMN 386 (687)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd 386 (687)
..|.. .|++.+..+-+...|+..+++++|..+++...+. -+.++
T Consensus 316 --~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 316 --LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred --hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 11111 1122222222777888889999999888866531 12233
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----C--CCC-CcchHHHHHHHHHhCCChHHHHHHHHHHH----HC
Q 005628 387 ----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G--INP-RLRSYGPALSVFCNNGDVDKACSVEEHML----EH 451 (687)
Q Consensus 387 ----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g--~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~----~~ 451 (687)
..+|+.|-..|-+.|++++|.++|++.... + ..+ ....++-|-..|-+.+..++|.++|.+-. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 358999999999999999999999987643 1 112 23566777788889999999999998743 33
Q ss_pred CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 452 GVY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 452 gv~-pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
|.. |+ ..+|.-|...|...|++++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 33 4789999999999999999999988776
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.89 E-value=0.0009 Score=73.54 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=155.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~-------~tyn~ 231 (687)
.....++.+.|.+.++.+.+.. |+ +...+..+...|.+.|++++|++++..+.+.+..++. .+|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P~-----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--PR-----HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4446788899999999985432 11 2367888899999999999999999999987765322 12233
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
++.... +..+.+....++. ++.+. .+ +.-..-.+... +...|+.++|.+++.+.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333222 1122233333332 11111 11 33335555566 88999999999999887
Q ss_pred HhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH
Q 005628 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (687)
.+. .||.. .+++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred Hhc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 763 23321 114455566799999999999998763 3456678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
.++-..|.+.+++++|.+.|+...+. .|+..+|-.+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998875 6999999999999999999999999998754
No 46
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=1.5e-05 Score=52.97 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi 222 (687)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.0021 Score=71.46 Aligned_cols=278 Identities=14% Similarity=0.038 Sum_probs=186.6
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhccc
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G--i~pd~~tyn~Ll~~~~~~~~ 241 (687)
+..+|...|.... .. .+| .+...-+=.+|-..+++++|.++|+..++.. ..-+..+|.++|.-+-+
T Consensus 334 ~~~~A~~~~~klp------~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--- 402 (638)
T KOG1126|consen 334 NCREALNLFEKLP------SH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--- 402 (638)
T ss_pred HHHHHHHHHHhhH------Hh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---
Confidence 4557777777752 21 222 2555666688888999999999999998642 23477899999977662
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC-Ccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P-d~~ 320 (687)
+-++..+. +++.+. .-..-.+|-++=++ |.-.++.+.|++.|+.-.+. .| ...
T Consensus 403 -----------~v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 403 -----------EVALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred -----------hHHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 12222222 233332 11145679999999 99999999999998876653 34 344
Q ss_pred ccchhhHhhccc-------cccCCCcchhcccCCCCChhhhHHH--HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 321 MKLNSQLLDGRS-------NLERGPDDQSRKKDWSIDNQDADEI--RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 321 ty~~~~li~g~~-------~~a~~~~~~m~~~g~~pd~~tyn~~--lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
+|+ +-|.- +.|...| ++.+..|...||+. |--.|.|.++++.|.--|++..+-+. -+.+...
T Consensus 457 ayT----LlGhE~~~~ee~d~a~~~f----r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~ 527 (638)
T KOG1126|consen 457 AYT----LLGHESIATEEFDKAMKSF----RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILC 527 (638)
T ss_pred hhh----hcCChhhhhHHHHhHHHHH----HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHh
Confidence 443 33332 2233233 23455677777762 22457789999999999998876542 3566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEA 470 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~ 470 (687)
.+-..+-+.|+.|+|++++++-....-+ |.-+---....+...++.++|+..++++++ +.|+ ...|-.|-..|-+.
T Consensus 528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 528 HIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRL 604 (638)
T ss_pred hhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHH
Confidence 7777888899999999999987654322 222222234445667899999999999987 4565 45677777889999
Q ss_pred CChHHHHHHHHHHHhccCCCChh
Q 005628 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|+.+.|+.-|.-+.+. .+.++
T Consensus 605 ~~~~~Al~~f~~A~~l--dpkg~ 625 (638)
T KOG1126|consen 605 GNTDLALLHFSWALDL--DPKGA 625 (638)
T ss_pred ccchHHHHhhHHHhcC--CCccc
Confidence 9999998888877776 44444
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=97.83 E-value=0.00097 Score=76.56 Aligned_cols=239 Identities=9% Similarity=-0.067 Sum_probs=118.5
Q ss_pred cHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcc
Q 005628 190 EQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (687)
Q Consensus 190 ~~~tyn~lI~~~~k-----~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~ 263 (687)
+...|...+.+-.. .+++++|+++|++..+. .|+.. .|..|-.++...... +.....++.++|...+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~-g~~~~~~~~~~A~~~~~--- 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQM-GIFDKQNAMIKAKEHAI--- 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHc-CCcccchHHHHHHHHHH---
Confidence 34566666666422 23568999999998854 56543 444443333211100 00112344566666663
Q ss_pred cccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhc
Q 005628 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343 (687)
Q Consensus 264 ~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~ 343 (687)
+.... +-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 329 ----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~---------------------- 373 (553)
T PRK12370 329 ----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISAD---------------------- 373 (553)
T ss_pred ----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHH----------------------
Confidence 22211 11133334444333 555666777777666655542 33211
Q ss_pred ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-
Q 005628 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (687)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~- 422 (687)
.|.. +-..|...|++++|...|++..+.... +...+..++..+...|++++|...+++..... .|+.
T Consensus 374 ---------a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~ 441 (553)
T PRK12370 374 ---------IKYY-YGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNP 441 (553)
T ss_pred ---------HHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCH
Confidence 1112 444556667777777777766654322 11222233334555666777777766655432 2332
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
..+..+-..+...|+.++|...++.+... .|+. ...+.|-..|+..| ++|...++.+.+
T Consensus 442 ~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 442 ILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 23444555566667777777776665432 2232 22333334445555 355555555544
No 49
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.2e-05 Score=52.11 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444443
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=97.82 E-value=0.0016 Score=74.69 Aligned_cols=248 Identities=12% Similarity=0.027 Sum_probs=158.8
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~---------k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~ 234 (687)
...+|.++|+.-.+ ..|+ ...|..+-.++. ..+++++|...+++..+.. +-+...+..+-.
T Consensus 276 ~~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35688888888743 2232 234444433332 3355899999999988653 224566666655
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
.+. ..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...+++..+..
T Consensus 347 ~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 347 INT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC
Confidence 666 6789999999995 33332 21134446666666 889999999999999987753
Q ss_pred CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
|+...+ +.. +...+...|++++|.+.+++......+-+...+..+-
T Consensus 403 --P~~~~~-------------------------------~~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 403 --PTRAAA-------------------------------GIT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred --CCChhh-------------------------------HHH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 432211 011 3334556789999999999987654222455677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~ 472 (687)
..+...|+.++|...+..+... .|+.. ..+.+-..|+..| ++|...++.+.+. .-.|...-+..++ |.-.|+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~ 522 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGE 522 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhh
Confidence 8889999999999999887654 34433 3444555667777 4888877777653 2233333333333 344566
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
-+.+..+ +++.+.
T Consensus 523 ~~~~~~~-~~~~~~ 535 (553)
T PRK12370 523 AIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHH-HHhhcc
Confidence 6666555 777665
No 51
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00038 Score=75.74 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
+++.+....+++++..++.+.+.. ....-..|..++|+.|-+.|..++++.+++.=...|+-||..|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 677777777888888888888765 332334555699999999999999999998888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
|++..|.+|..+|...+...+..|+..-+.+|.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999998888888888888877777666
No 52
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.00058 Score=59.45 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCC--------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
|.-+...+++.....+|..+++.|+ .|.+.+|+.++.+.++.. ++-..+.++++|...+++|+..||+.+|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 555555555555554431 2334556777777777777777777777
Q ss_pred HHHHh
Q 005628 465 RVSVE 469 (687)
Q Consensus 465 ~~~~~ 469 (687)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.64 E-value=0.025 Score=63.67 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=186.0
Q ss_pred HHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005628 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (687)
Q Consensus 158 ~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~ 236 (687)
+.+.+.|+.++|++.++.-.. ..+| ...+-..-..+.+.|+.++|..+|..+.+.+ |+.+.|-..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 355689999999999977522 2233 3455666788899999999999999999875 6766666555555
Q ss_pred HhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCCh-hhHHHHHHHHHhc
Q 005628 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENL 313 (687)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~-~~A~~lf~eM~~~ 313 (687)
..... .......+....+++ ++... .+ +.+-.-.|. +.....| ..+...+..+..+
T Consensus 82 ~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 82 LGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred Hhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhc
Confidence 41110 001224555566664 33222 11 111111111 2233334 3456667778888
Q ss_pred CCCCCccccc-----------hhhHhhcccccc--CCCcchh-cccCCCCChhhhHHHHH-HHHHhhccHHHHHHHHHHH
Q 005628 314 GQFSNGHMKL-----------NSQLLDGRSNLE--RGPDDQS-RKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKM 378 (687)
Q Consensus 314 g~~Pd~~ty~-----------~~~li~g~~~~a--~~~~~~m-~~~g~~pd~~tyn~~lI-~~~~k~g~~~~A~~lf~~M 378 (687)
|+.+--...- ...++.++.... ...+..- ....-.|....|...++ ..|-..|+.++|+++.++-
T Consensus 141 gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 141 GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8643221111 112222222110 0011100 01112355545554444 5577899999999999988
Q ss_pred HhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 005628 379 CLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (687)
Q Consensus 379 ~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (687)
.+.. |+ +..|.+-.+.|-+.|++++|.+.++.-..... -|...=+-....+.++|++++|.+++......+..|-.
T Consensus 221 I~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 221 IEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 8763 55 66888889999999999999999999887754 57888888999999999999999999999877764432
Q ss_pred HHH--------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 458 PEL--------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 458 ~ty--------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+ ...-.+|.+.|++..|++.|..+...
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 221 34456778899998888777666554
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.63 E-value=0.0086 Score=67.39 Aligned_cols=268 Identities=13% Similarity=0.071 Sum_probs=176.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCc
Q 005628 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV-LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~-Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~ 278 (687)
.+...|++++|++.++.-. ...+|...+-- .-..+. +.|+.++|..++. ++.+. +-.|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCcH
Confidence 3478899999999997643 34456655544 445555 8899999999994 66654 33344
Q ss_pred cchhccccccccccccc-----cCCChhhHHHHHHHHHhcCCCCCccccc--hhhHhhc--cccccCCCcchhcccCCCC
Q 005628 279 GQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKL--NSQLLDG--RSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 279 ~tyn~Li~~~~~~~~~~-----~~g~~~~A~~lf~eM~~~g~~Pd~~ty~--~~~li~g--~~~~a~~~~~~m~~~g~~p 349 (687)
--|..|..+ .. .....+....+++++...- |.....- .-..+.| +-..+......+..+|+++
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS 144 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch
Confidence 446777666 42 2235677888898887654 3332221 0000111 1123334555666777654
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRM 413 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------i~pd~~--tyn~LI~~~~~~g~~~~A~~l~~~M 413 (687)
+++. |-..|......+-..+++...... + -.|... ++.-|...|-..|+.++|++++++-
T Consensus 145 ---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 145 ---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred ---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444 556666555556666666665432 1 134443 4455667788899999999999987
Q ss_pred HHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 005628 414 KSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (687)
Q Consensus 414 ~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (687)
.+. .|+ +.-|..--..|-+.|++++|.+.+++....... |-..-+-....+.++|++++|.+++........++..
T Consensus 221 I~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 221 IEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 765 466 456777777888999999999999998876543 7788888899999999999999999999887333333
Q ss_pred hHHHHHHHHH
Q 005628 493 STADVIAKWF 502 (687)
Q Consensus 493 ~t~~~I~~~~ 502 (687)
+...+-..||
T Consensus 298 ~L~~mQc~Wf 307 (517)
T PF12569_consen 298 NLNDMQCMWF 307 (517)
T ss_pred CHHHHHHHHH
Confidence 3444433333
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0077 Score=63.91 Aligned_cols=125 Identities=11% Similarity=0.101 Sum_probs=97.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-+-|-...+...|.+++-+... -++-|....+-|-+.|-+.|+-..|++.+.+--.. ++.|+.|..-|-.-|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 34555556677778877755433 25557888999999999999999999887664333 55677888888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~ll~~M~~~ 486 (687)
.++|...|+...- +.|+..-|..||..| .+.|++.+|+++++....+
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8999999987543 789999999998776 5689999999999998877
No 56
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.00043 Score=60.25 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=68.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g--------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
.|..+...+++.....+|+.++..|+ .|++.+||.++++.++.. ++-+.+.++..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 55666677999999999999999999 999999999999999853 344678899999999999999999999
Q ss_pred HHHHHhC
Q 005628 429 LSVFCNN 435 (687)
Q Consensus 429 I~~~~~~ 435 (687)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988763
No 57
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.55 E-value=0.0007 Score=65.98 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC----------------ChHHHH
Q 005628 384 PMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~-----g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g----------------~~~~A~ 442 (687)
..|..+|..+|+.|.+. |.++-...-++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 35677777777777753 677777778888888888888888888888776522 237799
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
+|++.|+..||.||..|+..|++.+.+.+..-
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999998877543
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.52 E-value=0.008 Score=66.32 Aligned_cols=227 Identities=11% Similarity=-0.024 Sum_probs=148.7
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS- 238 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~- 238 (687)
.-..++.+.|...++.+.+.. |+ +...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346788999999999996542 21 2367889999999999999999999999998765333221222222210
Q ss_pred --cccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCC
Q 005628 239 --AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (687)
Q Consensus 239 --~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~ 315 (687)
.+. .....+....... ...+ ... +...+-.+... +...|+.++|..++++..+..
T Consensus 236 l~~~~------~~~~~~~L~~~~~-------~~p~--~~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~~- 293 (409)
T TIGR00540 236 LDEAM------ADEGIDGLLNWWK-------NQPR--HRRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKKL- 293 (409)
T ss_pred HHHHH------HhcCHHHHHHHHH-------HCCH--HHhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhhC-
Confidence 000 0111112222221 1110 001 33345666667 899999999999999988753
Q ss_pred CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 005628 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTA 392 (687)
Q Consensus 316 ~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~ 392 (687)
||..... +-.+..-.....++.+.+.+.++...+. .|+. ....+
T Consensus 294 -pd~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~s 340 (409)
T TIGR00540 294 -GDDRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRA 340 (409)
T ss_pred -CCcccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHH
Confidence 4433210 0010112233446777888888776654 2333 55668
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+-..+.+.|++++|.+.|+........||...+..+-..+.+.|+.++|.++|++-
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889999999999999996444455799999999999999999999999999874
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.49 E-value=0.018 Score=60.70 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=188.1
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~ 242 (687)
.|++..|+++...-.+. +..|- ..|-.-..+--+.||.+.|-.+..+.-+.-=.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~------~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH------GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhc------CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 47888899888875332 33343 6788888889999999999999999887644566667777777777
Q ss_pred CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 243 ~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
..|+...|..-.+-+ .+|.. .+...-...... |.+.|++.....++..|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~p----r~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTP----RHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCc----CChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 567777776665411 12221 145556777778 99999999999999999999876554322
Q ss_pred c-hh----hHhhccc--cccCC---Ccchhccc-CCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 323 L-NS----QLLDGRS--NLERG---PDDQSRKK-DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 323 ~-~~----~li~g~~--~~a~~---~~~~m~~~-g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
- .. .+++-.. ..+.. .+.+...+ .-.|.++. + ++.-+.++|+.++|.++..+-.+++..|...+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~--~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-- 300 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV--A-YAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-- 300 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHH--H-HHHHHHHcCChHHHHHHHHHHHHhccChhHHH--
Confidence 1 00 1111111 01111 11222111 11233322 2 55678888999999999998888887776222
Q ss_pred HHHHHHHHcCChHHHHHHHHHH-HHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M-~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
.-.+.+-++...=.+..+.- +..+-.| -.+.+|=.-|.+++.+.+|.+.|+...+ ..|+..+|+-+-++|.+.
T Consensus 301 --~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 301 --LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred --HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 12344556665555555443 3445555 5566677778899999999999996554 568999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 005628 471 GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (687)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999988876544
No 60
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.48 E-value=0.0085 Score=66.12 Aligned_cols=258 Identities=15% Similarity=0.086 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
.+|..+-+.+-..|++.+|+.+|+.|++. +| .+..|-.+-.++. ..|+.+.|.+.|. +-+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888999999999999999999999874 44 4567888888888 7788888888884 1111
Q ss_pred ccCCCCCccc-hhccccccccccccccCCChhhHHHHHHHHHhcCCCCC-ccccc-hhhHhhccc--cccCCCcchhccc
Q 005628 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL-NSQLLDGRS--NLERGPDDQSRKK 345 (687)
Q Consensus 271 ~~~g~~d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd-~~ty~-~~~li~g~~--~~a~~~~~~m~~~ 345 (687)
-....-+..+ ...|++ ..|++++|..-+.+-.+. .|. .+.|+ .+.+...-. ..|..-|.+.+
T Consensus 179 lnP~l~ca~s~lgnLlk---------a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-- 245 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLK---------AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-- 245 (966)
T ss_pred cCcchhhhhcchhHHHH---------hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh--
Confidence 1100001111 333433 378888888777665543 232 13333 112222211 22222233222
Q ss_pred CCCCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-
Q 005628 346 DWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (687)
Q Consensus 346 g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~- 422 (687)
.+.|+- ..|-+ |=+.|...+.+++|...|.+... ..|+ .+.|..|-..|-..|.+|.|++.+++..+. .|+-
T Consensus 246 kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 246 KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 234442 23444 55666667777777777766554 3454 467777878888899999999999987654 5654
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.|-.++-..|++.+|...+...+.-. .--....+-|-..|...|.+++|..+|..-.+-
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 679999999999999999999998887642 123456677888999999999999999876655
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.47 E-value=0.013 Score=65.28 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=114.2
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
|...+++++|..+|+++.. .....+.. ..+--..++++ |-..|++.|++++|..
T Consensus 251 y~~~~k~~eAv~ly~~AL~-------------i~e~~~G~------------~h~~va~~l~n-La~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALT-------------IREEVFGE------------DHPAVAATLNN-LAVLYYKQGKFAEAEE 304 (508)
T ss_pred HHHhccHHHHHHHHHHHHH-------------HHHHhcCC------------CCHHHHHHHHH-HHHHHhccCChHHHHH
Confidence 7777888888888888765 22222210 00011234555 6678999999998887
Q ss_pred HHHHHHh-----CCCC-CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCc----chHHHHHHHHHhCCChH
Q 005628 374 IYEKMCL-----DEVP-MNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYGPALSVFCNNGDVD 439 (687)
Q Consensus 374 lf~~M~~-----~gi~-pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~----~ty~~lI~~~~~~g~~~ 439 (687)
.+++..+ .|.. |.+. -++.+...|+..+++++|..++..-.+. -..++- -+|+.|=..|-..|+++
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 7776542 2222 3333 4677888899999999999998865432 122333 57899999999999999
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 440 KACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 440 ~A~~l~~~M~~~------gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
+|.++|+..... +..+ .-..++-|-..|.+.+..++|.++|.+-.
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 999999987653 1222 24567788888899999999999988754
No 62
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.41 E-value=0.0019 Score=70.29 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=107.7
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 374 lf~~M~~---~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
++..|.. .+.+.+.+...++++.+....+++++..++...... ...--..|..++|..|.+.|..+.+.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 355678889999999999999999999999988765 23233456679999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcC
Q 005628 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (687)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~ 504 (687)
...|+-||..|||.||+.+.+.|++..|.++..+|.....--.|.|+.. +...++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998744555667766 5544443
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.18 Score=54.34 Aligned_cols=261 Identities=11% Similarity=0.063 Sum_probs=180.3
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHhc
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC-SKRGDVMGAIRLYDKAQREGI-K-LGQYHYNVLLYLCSSA 239 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~-~k~g~~~~A~~lf~~M~~~Gi-~-pd~~tyn~Ll~~~~~~ 239 (687)
....+++..-.+.....|. +-+ .-+-+.+.++ -...|+++|+.+|+++.+..- + -|..||+.+|..--.
T Consensus 240 l~q~~e~~~k~e~l~~~gf------~~~-~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGF------PNS-MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHhccC------Ccc-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 3345566666665544332 222 2333333333 345699999999999997632 2 478899999876552
Q ss_pred ccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
++.-.--|..++. +. -..|+.++-+- |+-.++.+.|...|+.-.+.. |
T Consensus 312 --------~skLs~LA~~v~~--------------idKyR~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN--p 361 (559)
T KOG1155|consen 312 --------KSKLSYLAQNVSN--------------IDKYRPETCCIIANY------YSLRSEHEKAVMYFKRALKLN--P 361 (559)
T ss_pred --------hHHHHHHHHHHHH--------------hccCCccceeeehhH------HHHHHhHHHHHHHHHHHHhcC--c
Confidence 1222223444442 22 33455555566 777888899999998776542 2
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~ 397 (687)
.. ..-.++|=+-|..-.....|.+-|+...+-. +.|--.|=.|=.+|
T Consensus 362 ~~--------------------------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 362 KY--------------------------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ch--------------------------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 11 1112324477888888888999998887653 45778899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 398 MSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
.-.+...-|+-.|++-.. ++| |.+.|.+|=.+|.+.+++++|.+.|......|-. +...|..|-+.|-+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHH
Confidence 999999999999987654 455 7799999999999999999999999999877633 558899999999999999999
Q ss_pred HHHHHHHHhcc--CC-CChhHHHH
Q 005628 477 YYLLHKLRTSV--RK-VSPSTADV 497 (687)
Q Consensus 477 ~~ll~~M~~~~--~g-~~p~t~~~ 497 (687)
...|.+-.+.. .| +.|.|..+
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHH
Confidence 99888776531 12 55555433
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.012 Score=62.43 Aligned_cols=285 Identities=11% Similarity=0.076 Sum_probs=172.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK-RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k-~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
.+.+.++.+.|.+++.-+..+..+... ...-|...--|.+ ..++.+|...-+..... .-||.---.--
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~s-----aaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nk 496 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTAS-----AAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNK 496 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhH-----HHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcC
Confidence 345677888888888777543322211 1111222222233 34678888777766532 22332211111
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~ 316 (687)
..-+ .-.|++++|.+.+. |-..+ +-. ....||+-+.+ -..|++++|+..|-.+...=..
T Consensus 497 gn~~-----f~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 497 GNIA-----FANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred Ccee-----eecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHHHHh
Confidence 0000 03688888888884 33322 111 12226666554 5678888888888765432111
Q ss_pred CCccccchhhHhhccc---cccCCCcchhcccCCCCChh-hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005628 317 SNGHMKLNSQLLDGRS---NLERGPDDQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (687)
Q Consensus 317 Pd~~ty~~~~li~g~~---~~a~~~~~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~ 392 (687)
--.+.| .+.+-|. +.+..+---|....+.|+-. ..+. |-+.|-+.|+-..|++.+-+--. -++-|..|...
T Consensus 557 n~evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsyr-yfp~nie~iew 631 (840)
T KOG2003|consen 557 NAEVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEW 631 (840)
T ss_pred hHHHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHH
Confidence 111122 2222222 22222222344445556544 4444 88899999999999987654332 35678889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH-hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (687)
|-.-|....-+++|+..|+... =+.|+..-|-.+|..|. +.|+..+|+++++..-.+ +.-|.....-|++.+...|
T Consensus 632 l~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999999999999998643 37899999999998665 579999999999998654 7778888888998887777
Q ss_pred ChHHHHHHHHHH
Q 005628 472 KGDRVYYLLHKL 483 (687)
Q Consensus 472 ~~~~A~~ll~~M 483 (687)
.. ++.++-+++
T Consensus 709 l~-d~key~~kl 719 (840)
T KOG2003|consen 709 LK-DAKEYADKL 719 (840)
T ss_pred ch-hHHHHHHHH
Confidence 54 344444443
No 65
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0032 Score=61.46 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHH-----hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------------CChHHHHHH
Q 005628 351 NQDADEIRLSEDA-----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFDM 409 (687)
Q Consensus 351 ~~tyn~~lI~~~~-----k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~----------------g~~~~A~~l 409 (687)
..+|.. +|+.|. +.|.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+++
T Consensus 47 K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 47 KATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred HHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 334444 555555 4477888888899999999999999999999976552 234569999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhCCCh
Q 005628 410 VKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 410 ~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (687)
+++|...|+.||..|+..|++.|.+.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999777653
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.09 E-value=0.0049 Score=64.44 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=90.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
.|..|.+.++++.|.+.++.|.+.. .| .+..-|..++.. ...+.+|+.+|+++... +.++..+.|.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 6788889999999999999998753 34 445556665554 33688999999998654 5678888888888999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (687)
..|++++|.+++.+..+..- -|..+..-+|-+....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999988766542 2455666677777777877 6788899998876
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.15 Score=52.56 Aligned_cols=263 Identities=12% Similarity=0.043 Sum_probs=151.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
-+...|..+.|..+-..+.+. |+.-...-....-.|-.-|...|-+|.|..+|..+.+.|.. -.-..-.|+..|-
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ- 152 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQ- 152 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHH-
Confidence 455788999999999998532 22211111233444556678889999999999999876532 1234456777777
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-Cc--cc-hhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN--GQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~--~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
....+++|.++-. ++....+-. ++ .- |.-|-.. +....+++.|..++..-.+.
T Consensus 153 ---------~treW~KAId~A~-------~L~k~~~q~~~~eIAqfyCELAq~------~~~~~~~d~A~~~l~kAlqa- 209 (389)
T COG2956 153 ---------ATREWEKAIDVAE-------RLVKLGGQTYRVEIAQFYCELAQQ------ALASSDVDRARELLKKALQA- 209 (389)
T ss_pred ---------HhhHHHHHHHHHH-------HHHHcCCccchhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhh-
Confidence 6667777777663 232221111 00 00 2222222 33455666666666554443
Q ss_pred CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
.|+.+--+ .++=+.+...|+++.|.+.++...+.+..--..+...|.
T Consensus 210 -~~~cvRAs--------------------------------i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 210 -DKKCVRAS--------------------------------IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred -Cccceehh--------------------------------hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 13322221 222355667788888888888887776544456677888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cC
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---AG 471 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~g 471 (687)
.+|.+.|+.++....+..+.+..-.++. -..+-.---...-.+.|.....+-.. -.|+...+..||+.-.. .|
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcccccc
Confidence 8888888888888888877765322222 12221111122223444444333332 24888888888876633 34
Q ss_pred ChHHHHHHHHHHHhc
Q 005628 472 KGDRVYYLLHKLRTS 486 (687)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (687)
...+-..+++.|...
T Consensus 333 ~~k~sL~~lr~mvge 347 (389)
T COG2956 333 RAKESLDLLRDMVGE 347 (389)
T ss_pred chhhhHHHHHHHHHH
Confidence 455556666666655
No 68
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.96 E-value=0.032 Score=60.61 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=98.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
|+..+...++++.|.++|+++.+.. |++ ...|++.+...++-.+|.+++++.... .+-|......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 4566667789999999999999875 654 445888888889999999999988854 22244445555567889999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|.++.+++.+ +.|+. .+|..|..+|.+.|+++.|+..++.|.-.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999987 45665 59999999999999999999999877644
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.057 Score=55.55 Aligned_cols=244 Identities=11% Similarity=-0.003 Sum_probs=166.9
Q ss_pred CCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhh
Q 005628 180 GSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDT 258 (687)
Q Consensus 180 g~~~~~g~~P~~~ty-n~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~l 258 (687)
+.....++.-| +=| +.+=.+|-+-|-+.+|.+-|..-... .|-+.||--|-+.|. +..+.+.|+.+
T Consensus 212 ~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~~ 278 (478)
T KOG1129|consen 212 KPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALLV 278 (478)
T ss_pred cccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHHH
Confidence 33334444444 334 55667889999999999999887765 466778888889999 77888999999
Q ss_pred hhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCC
Q 005628 259 FEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP 338 (687)
Q Consensus 259 f~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~ 338 (687)
|. +-.+ .++-.|||-.=+.- .+-..++.++|.+++++-.+.. |+.+-
T Consensus 279 ~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~~nvE----------------- 325 (478)
T KOG1129|consen 279 IG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--PINVE----------------- 325 (478)
T ss_pred Hh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--Cccce-----------------
Confidence 85 2211 12234454222111 1445667788888888766532 11110
Q ss_pred cchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 339 ~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
.. +++-.+|.-.++++-|+..|+.+.+-|+. +...|+.+--+|.-.+++|.++--|..-...--
T Consensus 326 --------------ai-Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 326 --------------AI-ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred --------------ee-eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 00 11445677788999999999999999976 556677777777778999999988887765533
Q ss_pred CCCcc--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 419 NPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~--ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+.. .|-.|=....-.||+..|.+.|+-...+.-. +...||-|--.-.+.|++++|..+++.-.+.
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 34432 3444444455679999999999988765432 4567777766678999999999999987766
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.94 E-value=0.094 Score=55.13 Aligned_cols=218 Identities=11% Similarity=-0.041 Sum_probs=139.9
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccc
Q 005628 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (687)
Q Consensus 204 ~g~~~~A~~lf~~M~~~-Gi~pd~--~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~t 280 (687)
.+..+.++.-+.++... .+.|+. ..|..+=..|. ..|+.++|...|. +.... .-.+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 35567788888888753 233332 33444444555 6788999998885 33221 2225556
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHH
Q 005628 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (687)
Q Consensus 281 yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (687)
|+.+-.. +...|++++|...|+...+. .|+. ...|.. +-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHH
Confidence 8887777 99999999999999887764 3442 122334 556
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
.+...|++++|.+.|+...+.. |+..........+...++.++|...|...... ..|+...+ .+. ....|+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 6778899999999999988753 43322222222334567899999999765433 33443322 222 233566655
Q ss_pred HHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 441 A~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+ +.++.+.+. .+ .| ....|..|-..+.+.|+.++|...|++-...
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2357888999999999999999999998876
No 71
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.88 E-value=0.25 Score=52.42 Aligned_cols=244 Identities=14% Similarity=0.030 Sum_probs=143.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccC
Q 005628 196 VELDMCSK--RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (687)
Q Consensus 196 ~lI~~~~k--~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~ 273 (687)
.++.+.-+ .|++..|.++..+-.+.+-.| +.+.++.+-+. + ..|+.+++-..+. +..+..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA-~-------qrgd~~~an~yL~-------eaae~~ 148 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAA-Q-------QRGDEDRANRYLA-------EAAELA 148 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHH-H-------hcccHHHHHHHHH-------HHhccC
Confidence 34444433 478888888888877766544 34444444331 1 5677777776663 222211
Q ss_pred CCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhh
Q 005628 274 DMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (687)
Q Consensus 274 g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t 353 (687)
|-++...+=+.-.- ....|+...|..-.++..+.+-.+.. .
T Consensus 149 ~~~~l~v~ltrarl------ll~~~d~~aA~~~v~~ll~~~pr~~~---------------------------------v 189 (400)
T COG3071 149 GDDTLAVELTRARL------LLNRRDYPAARENVDQLLEMTPRHPE---------------------------------V 189 (400)
T ss_pred CCchHHHHHHHHHH------HHhCCCchhHHHHHHHHHHhCcCChH---------------------------------H
Confidence 11111112222223 55667777777666666554322111 1
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
. .+....|.+.|++.....++.+|.+.|+--|+ .+|+.+++-....+..+.-...++..... .+-+...-.
T Consensus 190 l-rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~ 267 (400)
T COG3071 190 L-RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVV 267 (400)
T ss_pred H-HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHH
Confidence 1 23678888999999999999999888876543 46777777666655555555555554433 333445555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC------------------------------HHHHHHHHHHHHhcCChHHH
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPE------------------------------EPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd------------------------------~~ty~~Li~~~~~~g~~~~A 476 (687)
+++.-+.++|+.++|.++.++-.+++..|+ .-.+.+|=.-|.+.+.+.+|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 666677777777777777766655544333 24455666667777777777
Q ss_pred HHHHHHHHhccCCCChhHHHHHHH
Q 005628 477 YYLLHKLRTSVRKVSPSTADVIAK 500 (687)
Q Consensus 477 ~~ll~~M~~~~~g~~p~t~~~I~~ 500 (687)
...|+.-.+. .++.++|+.+..
T Consensus 348 ~~~leaAl~~--~~s~~~~~~la~ 369 (400)
T COG3071 348 SEALEAALKL--RPSASDYAELAD 369 (400)
T ss_pred HHHHHHHHhc--CCChhhHHHHHH
Confidence 7777766555 566666666433
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.68 E-value=0.075 Score=53.51 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=112.3
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..... |+.... ...+.. +-..|.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 778899999999999876642 332110 011222 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCcc-hHH----------------
Q 005628 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (687)
Q Consensus 374 lf~~M~~~gi~pd~~--tyn~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~Pd~~-ty~---------------- 426 (687)
.|+++.+........ ++..+-..+... |+.++|.+.|+.+... .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998754322222 333333344433 7789999999998765 24432 111
Q ss_pred -HHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 427 -~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+-..+.+.|+.++|...++...+.. -......+..+...+.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23456778899999999999988763 1224578889999999999999999999998876
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.68 E-value=0.31 Score=52.24 Aligned_cols=229 Identities=11% Similarity=-0.029 Sum_probs=129.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc
Q 005628 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
.+...|++++|.+++++..... +-|...++. ...+...+ ...+..+.+...+. . .. ...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~--~~~~~~ 113 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WA--PENPDY 113 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cC--cCCCCc
Confidence 4566789999999999887652 233334442 11221100 03455555666553 1 10 111222
Q ss_pred c--hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHH
Q 005628 280 Q--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (687)
Q Consensus 280 t--yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (687)
. +..+-.. +...|++++|...+++..+.. |+..... ..
T Consensus 114 ~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~-------------------------------~~- 153 (355)
T cd05804 114 WYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV-------------------------------HA- 153 (355)
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH-------------------------------HH-
Confidence 2 2233334 678899999999999988754 5543221 12
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCcchH-H--HHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-~--~lI~ 430 (687)
+-..|...|++++|...+++...... .|+. ..|-.+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 55677788999999999988776432 2333 3456788888889999999999988753321 1112111 1 3334
Q ss_pred HHHhCCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-+-..|....+.+. ......... ............++...|+.++|..++..+...
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44444544433333 211111111 111122235666778888899999999888764
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.67 E-value=0.29 Score=56.74 Aligned_cols=298 Identities=12% Similarity=0.033 Sum_probs=165.8
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.+++..|.-.|..-++.....-. ..|+ =+..|-+.|+...|+.-|.+|....-+.|..-+-.+|...++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~------~~~e-rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWE------LIYE-RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchH------HHHH-HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 344556666677777666443211111 2222 345667778888888888888764322233333444443331
Q ss_pred cccCCcccCCCCchhhhhhhhhhccccccccccc-CCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
. +-..+..+.|...+. .-... .+....-.+|++... +.+...++.|......+..+...|
T Consensus 289 ~------~~~~~~~e~a~~~le-------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 289 Y------FITHNERERAAKALE-------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred H------HHHhhHHHHHHHHHH-------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCC
Confidence 1 003445577777774 22111 011133447888877 899999999999999888844444
Q ss_pred Ccc----------------------ccchh--hHhhccc-----cccCCCcchhcccCCCC--ChhhhHHHHHHHHHhhc
Q 005628 318 NGH----------------------MKLNS--QLLDGRS-----NLERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKY 366 (687)
Q Consensus 318 d~~----------------------ty~~~--~li~g~~-----~~a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g 366 (687)
|.. +|... .+.-|+. ....-+.+-.....+.| +..-|-. +.++|-..|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhcc
Confidence 432 22200 1111111 01111222233333222 2233444 667777788
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHH
Q 005628 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
.+.+|+.+|..+...-.--+.+.|--+-++|-..|..++|.+.++..... .|+- -.--+|-.-+-+.|+.++|.+.+
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 88888888888777655556777777777777788888888887776654 2322 22223334456678888888777
Q ss_pred HHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 446 EHML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 446 ~~M~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
+.|. ..+..|+...---..+.|...|+.++-...-..|.+
T Consensus 507 ~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 507 EQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7753 223445555555555666667776665544444443
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.63 E-value=0.089 Score=54.21 Aligned_cols=154 Identities=8% Similarity=-0.041 Sum_probs=111.5
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
|-+.|.+.+|.+.|+.-.+.--.||.+.+ |-..|.+..+++.|+.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dTfll-----------------------------------LskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLL-----------------------------------LSKVYQRIDQPERALL 277 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhHHHH-----------------------------------HHHHHHHhccHHHHHH
Confidence 77788888888877765554333332222 5678888888999998
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 374 IYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 374 lf~~M~~~gi~pd~~ty-n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
+|.+-.+. .|-.+|| .-+.+.+-..++.++|.++++...+.. .-++....++-.+|.-.++.|.|+..+..+...|
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 88876653 3544554 556667777888899999988876652 2466666777778888889999999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+. +...|+-+--+|.-.+++|-++--|.+-...
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 76 5566766666777788888877777765554
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.55 E-value=0.033 Score=58.30 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=95.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----C
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~ 435 (687)
..+...|++++|+++++.- -+.-.....+..|.+.+++|.|.+.++.|.+.. .|. +-.-|..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 4567789999999988642 456777888999999999999999999998753 343 33344444433 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-Chh-HHHHHHH
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPS-TADVIAK 500 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~-t~~~I~~ 500 (687)
..+.+|+.+|+++.+. ..++..+.|.+.-++...|++++|..++.+-... .+ .|+ ..|.|..
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVC 244 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHH
Confidence 4799999999998665 6789999999999999999999999999997665 32 234 3565443
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.53 E-value=0.21 Score=57.85 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=57.0
Q ss_pred hHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 005628 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYL 235 (687)
Q Consensus 157 ~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~ 235 (687)
|...++ |+.++|.+++.+.+.+.. -+...|-+|=..|-+.|+.++++..+ |...-+.| |..-|-.+-..
T Consensus 147 N~lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 147 NNLFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHH
Confidence 334445 999999999999976532 23378999999999999999998766 33333444 34455555444
Q ss_pred HHhcccCCcccCCCCchhhhhhhhh
Q 005628 236 CSSAAVGVVKPAKSGSGMRTLDTFE 260 (687)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~lf~ 260 (687)
.. ..|.+++|.-.|.
T Consensus 217 s~----------~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 217 SE----------QLGNINQARYCYS 231 (895)
T ss_pred HH----------hcccHHHHHHHHH
Confidence 44 5566777766664
No 78
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.078 Score=59.40 Aligned_cols=248 Identities=12% Similarity=-0.002 Sum_probs=155.6
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~-~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
+..+.++|.++|+........ ..-++-.|.+++=.+-+.=.+ -.|..+.+.+ +-.+.||-++=+.|+
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~----rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPY----RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh---
Confidence 456788999999998543221 233457888887655332111 1223333332 335678888888888
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
-.++.+.|+..|. +-. .++ ..++|+.+=+- +.....+|.|..-|+.- +..|
T Consensus 433 -------LQkdh~~Aik~f~------RAi----Qldp~faYayTLlGhE------~~~~ee~d~a~~~fr~A----l~~~ 485 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK------RAI----QLDPRFAYAYTLLGHE------SIATEEFDKAMKSFRKA----LGVD 485 (638)
T ss_pred -------hhhHHHHHHHHHH------Hhh----ccCCccchhhhhcCCh------hhhhHHHHhHHHHHHhh----hcCC
Confidence 6777888888885 111 222 34445555444 78888888888888643 4567
Q ss_pred ccccchhhHhhccc----cccCCCcchhc---ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 319 GHMKLNSQLLDGRS----NLERGPDDQSR---KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 319 ~~ty~~~~li~g~~----~~a~~~~~~m~---~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
...|+ ..-|+. +..+.-+.++. ...+.|...+.-..+-..+-+.|+.|+|+++|++...-..+ |+.+--
T Consensus 486 ~rhYn---AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PRHYN---AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred chhhH---HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 77885 333333 11111122211 12244543333233556778899999999999998765432 333333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
-.+..+...++.++|+..|+++++. .|+. ..|-.+-..|-+.|+.+.|..-|--|.+..-+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3455666789999999999999875 4554 56677777888999999999888877664433
No 79
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.47 E-value=0.063 Score=55.96 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (687)
+|-. ++...-+.+.++.|..+|.+..+.+ +..++....++|.-+ ..++.+.|..+|+...+. +.-+..-|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555 7788888899999999999998654 345555555555433 356777799999998876 55577788999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+.|+.+.|..+|+..... +.++. ..|...|+.=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 33332 49999999999999999999999999987
No 80
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.55 Score=55.05 Aligned_cols=341 Identities=13% Similarity=0.026 Sum_probs=204.7
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-----HHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-----HYN 230 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~---Gi~pd~~-----tyn 230 (687)
.+-+.++...++.+|......= ....+. +.....|.+-.-.-..|++..|...|+..... -..+|.. |--
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L-~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDIL-ESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHH-HHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 4445556555566555432100 011122 33368888888888999999999999998754 2334442 111
Q ss_pred HHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccC-------CChhhH
Q 005628 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YRFDDL 303 (687)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~-------g~~~~A 303 (687)
-.|..|.. ..++.+.|..++. ++... |-.-|++ |.+. +.+.+|
T Consensus 500 YNlarl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 500 YNLARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhccCcHHH
Confidence 12222321 3456777777774 22111 2333444 3333 456677
Q ss_pred HHHHHHHHh-cCCCCCccccc-hhhHhhccccccCCCcchhcccCC-CCChhhhHHHHHHHHH------------hhccH
Q 005628 304 DSTFNEKEN-LGQFSNGHMKL-NSQLLDGRSNLERGPDDQSRKKDW-SIDNQDADEIRLSEDA------------KKYAF 368 (687)
Q Consensus 304 ~~lf~eM~~-~g~~Pd~~ty~-~~~li~g~~~~a~~~~~~m~~~g~-~pd~~tyn~~lI~~~~------------k~g~~ 368 (687)
..++.+... ..-.|++.+|- +-.+-.--...|..-|..+..+-. .+|.++.-+ |=+.|. ..+..
T Consensus 550 ~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia-LGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 550 SLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA-LGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH-hhHHHHHHhcccccChHHHHHHH
Confidence 777776544 44667776663 000001111334443333333211 134332211 112111 33466
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -+.-+|-.+-++|...|++..|.++|+.-
T Consensus 629 ~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999887654 45777788888889999999999999999998753 34456778899999999999999999976
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHHHHHhhccc------chhhH
Q 005628 449 LEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKK------WNESL 519 (687)
Q Consensus 449 ~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~~------~~~~~ 519 (687)
.+. .-.-+..+...|-+++-++|.+.+|.+.+-.-... .|... -+|+....++........... .-...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 554 55567888899999999999999999987776665 44444 355533333333222222110 11245
Q ss_pred HHHHhhhcCCcccccccCCCC
Q 005628 520 IKDTMENKGGGWHGLGWLGKG 540 (687)
Q Consensus 520 v~ea~~~~g~~~~~M~~~g~~ 540 (687)
+++|++ +|.+|...+-.
T Consensus 785 le~a~r----~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 785 LEEARR----LFTELSKNGDK 801 (1018)
T ss_pred HHHHHH----HHHHHHhcCCC
Confidence 667777 88888766655
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.31 E-value=0.12 Score=47.02 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+.+.|++++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++.....+ ..+...|..+-..|...|+.+
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 34444555555555555544432 2234444444445555555555555555443332 122333333344444455555
Q ss_pred HHHHHHHHHHH
Q 005628 440 KACSVEEHMLE 450 (687)
Q Consensus 440 ~A~~l~~~M~~ 450 (687)
+|...|+...+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 82
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.30 E-value=0.31 Score=53.04 Aligned_cols=125 Identities=13% Similarity=0.033 Sum_probs=94.8
Q ss_pred CCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
.||.+.|.....+-+.+.++.++|.+.|+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|.
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~ 412 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWD 412 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHH
Confidence 4666666676778888888888888888888875 355 455666777888888888888888877654 456778888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.|-.+|...|+..+|..-..|+ |.-.|.+++|+..+..-.+....-.|+
T Consensus 413 ~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 413 LLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 8888888888888887766654 466788888888888877764444454
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.28 E-value=0.58 Score=50.13 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=43.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSV 468 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~--~ty~~Li~~~~ 468 (687)
.+-..+...|++++|...+++..+.. +.+...+..+-..|...|++++|...++......- .|+. ..|..+-..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33344455555555555555554432 12233444444455555555555555555443211 1221 22334445555
Q ss_pred hcCChHHHHHHHHHHH
Q 005628 469 EAGKGDRVYYLLHKLR 484 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (687)
..|+.++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5555555555555543
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.27 E-value=0.095 Score=48.74 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=44.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
+-..+...|++++|...|....... ..+...|..+-..+.+.|++++|...|+...+.. ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444555555555555544331 1233444444445555555555555555554421 2244444445555555555
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
.++|...|+.-...
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 85
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.26 E-value=0.065 Score=43.60 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+...|++++|..+|++..+.. +.+...+..+...+...+++++|.+.|+...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34444555555555555554432 1122344444444555555555555555444331 112234444444444445554
Q ss_pred HHHHHHHHH
Q 005628 440 KACSVEEHM 448 (687)
Q Consensus 440 ~A~~l~~~M 448 (687)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.021 Score=59.22 Aligned_cols=188 Identities=11% Similarity=0.028 Sum_probs=131.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc--------------cccCCCcchhcccCCCCChhhhHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS--------------NLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~--------------~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
|.+.+++.+|..+..+.. |..- |. .++.|.. +.|...|...-..+.+-|.+.-.-.+-
T Consensus 295 yL~q~dVqeA~~L~Kdl~-----PttP-~E--yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLD-----PTTP-YE--YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred ecccccHHHHHHHHhhcC-----CCCh-HH--HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 788899999988876542 3221 11 2333322 344556666666677777666555566
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~ 438 (687)
+.+.-..++++.+-.++..+..=..-|.+-|| +..+++..|...+|.++|-.+....+ -|-.+|-+++ .+|.+++..
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCc
Confidence 77778889999999999888765556666666 67889999999999999977654444 3667776655 578899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhccCCCChhHHH
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALL-RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li-~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~ 496 (687)
+.||+++-.+.. ..+..+.--|| +-|-+++++--|-+-|+++... .|+|..|.
T Consensus 445 ~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 445 QLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred hHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 999988766532 22344443333 5667888888888889998888 77887553
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.20 E-value=0.78 Score=45.44 Aligned_cols=195 Identities=13% Similarity=-0.012 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
+.--|--+|-+.|+...|..-+++..+. .|+ ..+|..+-..|- +.|..+.|.+-|. .-+..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl 98 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSL 98 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhc
Confidence 4445556899999999999999999875 344 446667767777 7788888887774 11211
Q ss_pred cCCCCCccc-hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 272 SRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 272 ~~g~~d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
..+-.|+.. |.+. +|..|++++|...|++-... |+-.+-+
T Consensus 99 ~p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~s--------------------------- 139 (250)
T COG3063 99 APNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEPS--------------------------- 139 (250)
T ss_pred CCCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCcc---------------------------
Confidence 101112211 2222 66666666666666654432 2111110
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
.||-+ +.-+..+.|+++.|.+.|++-.+.... ...+.-.+.+...+.|++-.|..+++.....+. ++..+.-..|.
T Consensus 140 -~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~ir 215 (250)
T COG3063 140 -DTLEN-LGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIR 215 (250)
T ss_pred -hhhhh-hHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHH
Confidence 12223 323333556666666666655543211 123444555555566666666666655554433 55555555555
Q ss_pred HHHhCCChHHHHHHHHHH
Q 005628 431 VFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M 448 (687)
---+.|+.+.|-+.=..+
T Consensus 216 iak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 216 IAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 555556555555443333
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.17 E-value=0.3 Score=48.04 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=98.1
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHH-HhCCC--hHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~-~~~g~--~~~ 440 (687)
.++.+++...++...... +.|...|..|-..|...|++++|...|+...+.. | |...|..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 445666776676665543 4678899999999999999999999999877653 4 556666666654 67677 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIA 499 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~ 499 (687)
|.+++++..+..-. +...+..|-..+.+.|++++|...++++.+. .+..+ -+.+|.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i~ 185 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence 99999999886533 6678888888889999999999999999887 33332 555553
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.08 E-value=0.97 Score=47.46 Aligned_cols=229 Identities=12% Similarity=-0.025 Sum_probs=144.5
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~ 242 (687)
..+.+..-+.++.... ...|+ ...|..+=..+.+.|+.++|...|++..+.. +-+...|+.+-..+.
T Consensus 41 ~~e~~i~~~~~~l~~~-----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----- 109 (296)
T PRK11189 41 QQEVILARLNQILASR-----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----- 109 (296)
T ss_pred HHHHHHHHHHHHHccc-----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-----
Confidence 3345555666664321 12222 2456666667889999999999999988753 235678888888888
Q ss_pred CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 243 ~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
..|+.++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.+. .|+....
T Consensus 110 -----~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~--~P~~~~~ 168 (296)
T PRK11189 110 -----QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQD--DPNDPYR 168 (296)
T ss_pred -----HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 8999999999995 22221 11144556666666 77899999999999887664 2332111
Q ss_pred chhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 005628 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (687)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~ 402 (687)
.+....+...++.++|.+.|.+..... .|+...+ .+ .....|+
T Consensus 169 ---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~ 211 (296)
T PRK11189 169 ---------------------------------ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGK 211 (296)
T ss_pred ---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccC
Confidence 101122334678999999997755332 3333222 22 2234566
Q ss_pred hHHHHHHHHHHHHc-CC----CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 403 GDMAFDMVKRMKSL-GI----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 403 ~~~A~~l~~~M~~~-g~----~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
..++ +.+..+.+. .. .| ....|..+-..+.+.|+.++|...|+...+.+ .||-+.+-..+
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~ 277 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYAL 277 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHH
Confidence 6655 355555432 11 11 22478888889999999999999999998765 34655555433
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.41 Score=47.33 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=111.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g 436 (687)
|--+|...|++..|.+-+++..+.. +-+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+- ..-|..=.-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4468999999999999999998764 235578999999999999999999999987654 3433 44455555679999
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcCHHHHHh
Q 005628 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARL 510 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a 510 (687)
++++|...|+.....--.| -..||.-+--+..+.|+.+.|...|++-.+......|.....-...++.+....|
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999987763222 2357777777778999999999999998887444444444444455555554333
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.05 E-value=0.16 Score=47.09 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=85.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~ 433 (687)
++..+ ..++...+.+.++.+......-.- ...=.+-..+...|++++|...|+......-.|+. ...-.|-..+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 45555 478888999999999886422111 22223446778899999999999999887633322 23334566777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
..|+.++|...++....... ....+..+=+.|.+.|+.++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999977543333 344566777888999999999998875
No 92
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.05 E-value=0.16 Score=46.00 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
+......+...+.+.|+.++|.+.|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...|..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33456677778889999999999999987753 3366778888888999999999999999987764 445677777888
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005628 466 VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|...|+.++|...|++....
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999988887
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.01 E-value=0.49 Score=57.36 Aligned_cols=191 Identities=12% Similarity=0.029 Sum_probs=138.8
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCC----CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccc
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~----d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (687)
..+.++.|+.++. +....-.+. -.-.|-++++. ..-.|.-+...++|++..+..
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---------
Confidence 5677888888884 222211222 11236666666 444555566677777665421
Q ss_pred hhhHhhccccccCCCcchhcccCCCCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 005628 324 NSQLLDGRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (687)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~ 402 (687)
|. .+|-. |..-|.+.+.+++|-++|+.|.++- .-....|...++.+.+..+
T Consensus 1528 --------------------------d~~~V~~~-L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1528 --------------------------DAYTVHLK-LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred --------------------------chHHHHHH-HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccH
Confidence 11 13444 8899999999999999999998752 2466789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005628 403 GDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (687)
Q Consensus 403 ~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (687)
-++|..++.+..+. .|. +..-.-.+..-.+.|+.+.+..+|+.....-- --...|+..|+.=.+.|+.+.+..+
T Consensus 1580 ~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1580 AEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999876543 354 23334444455688999999999999887632 2456899999999999999999999
Q ss_pred HHHHHhccCCCChh
Q 005628 480 LHKLRTSVRKVSPS 493 (687)
Q Consensus 480 l~~M~~~~~g~~p~ 493 (687)
|++.... +.+|-
T Consensus 1657 feRvi~l--~l~~k 1668 (1710)
T KOG1070|consen 1657 FERVIEL--KLSIK 1668 (1710)
T ss_pred HHHHHhc--CCChh
Confidence 9999999 77777
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.97 E-value=0.11 Score=42.31 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
+|..+...+...|++++|..+++...+.. ..+...+..+...+...|+.++|.+.|+...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2233677778888899999999999999987764 334468888889999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.++|...+.+....
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.95 E-value=0.84 Score=45.81 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCcchHH
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYG 426 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty-----------------n~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~ 426 (687)
|+.++|.+.|+++...... +...+ -.+-..+.+.|++++|...++...... -......+.
T Consensus 129 ~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~ 207 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALA 207 (235)
T ss_pred HHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHH
Confidence 6677788888877764321 11111 134556788999999999999987652 112346888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+...+.+.|+.++|...++.+...
T Consensus 208 ~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 208 RLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999988654
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.33 Score=48.99 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=87.3
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
.+.|..+++-|.+.+++|.+- -+..|.+-|..++.+ .+.+.+|+-+|++|-++ ..|+.-+-|-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344666888899999999864 366777767776665 45688899999998764 6788888888888888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (687)
++++|..++++...+.-. +..|..-+|-.-...|.. +-..+.+.+++..
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999998877543 444554455444555544 4445666776665
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.91 E-value=2 Score=48.50 Aligned_cols=293 Identities=11% Similarity=-0.004 Sum_probs=170.5
Q ss_pred hHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005628 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (687)
Q Consensus 157 ~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~ 236 (687)
|+.+.+.+..++|++....-... +.-....--+--+-+.+.+++++|..+|..++.. .||.+-|.-.+..+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 44666777777777777665211 0011122234446678889999999999999875 58888888777666
Q ss_pred HhcccCCcccCCCCchhhhh-hhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCC
Q 005628 237 SSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (687)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~-~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~ 315 (687)
.. +.-+.-++. .+|... ++.-... -++-...-+.+ ....-.+....++..+.++|+
T Consensus 263 lg---------k~~d~~~~lk~ly~~l---s~~y~r~-e~p~Rlplsvl----------~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 263 LG---------KIKDMLEALKALYAIL---SEKYPRH-ECPRRLPLSVL----------NGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HH---------HHhhhHHHHHHHHHHH---hhcCccc-ccchhccHHHh----------CcchhHHHHHHHHHHHhhcCC
Confidence 51 122223333 444311 0111110 00000001111 111223445566777788885
Q ss_pred C---CCccccc--------hhhHhhccc--cccCCCcchhcccCCC-CChhhhHH-HHHHHHHhhccHHHHHHHHHHHHh
Q 005628 316 F---SNGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDWS-IDNQDADE-IRLSEDAKKYAFQRGFEIYEKMCL 380 (687)
Q Consensus 316 ~---Pd~~ty~--------~~~li~g~~--~~a~~~~~~m~~~g~~-pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~M~~ 380 (687)
. +|..++. ...++..|. ......|...-...++ |....|.. .++..|-+.|+++.|....+.-..
T Consensus 320 p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4 4555544 111222222 1111122211111133 34333433 356788899999999999998775
Q ss_pred CCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 381 DEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 381 ~gi~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
. .|+.+ -|-+=.+.++.+|++++|..++++-.+... ||...=+--..-..+++++++|.++.....+.|. +.+-
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 4 45543 455556889999999999999999887653 6776655666777789999999999998888775 4433
Q ss_pred HHHHH----------HHHHhcCChHHHHHHHHHHHhc
Q 005628 460 LEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li----------~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+-+-+ .+|.+.|++-.|++=|+.+...
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 33322 3456677777777666666554
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.18 Score=52.54 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=127.4
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~ 244 (687)
+-+.|++|+-.+. ...|. .-.|. |--|-+.+++.+|..+..++. ...|-.+ ++++...+..| .
T Consensus 269 ngEgALqVLP~L~--------~~IPE-ARlNL-~iYyL~q~dVqeA~~L~Kdl~--PttP~Ey----ilKgvv~aalG-Q 331 (557)
T KOG3785|consen 269 NGEGALQVLPSLM--------KHIPE-ARLNL-IIYYLNQNDVQEAISLCKDLD--PTTPYEY----ILKGVVFAALG-Q 331 (557)
T ss_pred CCccHHHhchHHH--------hhChH-hhhhh-eeeecccccHHHHHHHHhhcC--CCChHHH----HHHHHHHHHhh-h
Confidence 4556777766652 23344 33443 335778899999999987653 2234333 44444432111 1
Q ss_pred ccCCCCchhhhhhhhhhcccccccccccCCCC-Cccc-hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 245 ~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
.-+....+.-|.+.|. |...++.. |.+. --++-.. +--..++|+.+-.+......=..-|.+.|
T Consensus 332 e~gSreHlKiAqqffq--------lVG~Sa~ecDTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQ--------LVGESALECDTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hcCcHHHHHHHHHHHH--------HhcccccccccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 1113334566777773 44332333 3322 1111111 22222334444333333332222222233
Q ss_pred chhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcC
Q 005628 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMG 401 (687)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty-n~LI~~~~~~g 401 (687)
| +-.+++..|...+|.++|-......++ |..+| ..|.++|.+++
T Consensus 398 --------------------------------N--~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 398 --------------------------------N--LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred --------------------------------H--HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 2 678899999999999999877655444 55565 55667889999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 005628 402 DGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (687)
+++.|++++-.|.. ..+..+.--+| +-|-+++++--|-+.|++++.. .|+..-|
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 99999998866543 23444444444 4677889998888999888764 4555544
No 99
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.12 Score=52.01 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=100.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----C
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~ 435 (687)
.-|++.|++++|++...... .......| +..+.+..+++-|...++.|..- -+-.|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 45889999999999887622 22333333 34456778899999999999876 355666656665554 5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCH
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~ 505 (687)
+.+..|+-+|++|-++ ..|+.-+.+-+..++...|++++|..++++..++... .|+ ..|.|....-.|
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 7799999999999764 7899999999999999999999999999999887333 355 456654443333
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.84 E-value=0.22 Score=46.27 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=92.3
Q ss_pred CcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005628 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (687)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (687)
+.+....+.+..|...+.. +-..+...|++++|...|+...... +.+...|..+-..+.+.|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444433333333444 5567789999999999999988754 3477889999999999999999999999998753
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005628 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (687)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (687)
..+...+..+-.++.+.|+.++|...|+...+. .|+...|..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~ 130 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSE 130 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 346788888888999999999999999998774 466655553
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.82 E-value=0.2 Score=43.94 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEAL 463 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~~L 463 (687)
+-.+...+.+.|++++|.+.|..+.... |+ ...+..+...+.+.|+++.|...|+.+....- ......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444455555666666666666655431 22 12344455556666666666666666554321 1113345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..+.+.|+.++|...++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55566666666666666666655
No 102
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.73 E-value=0.094 Score=53.01 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC----------------hHHHHHH
Q 005628 386 NEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------------VDKACSV 444 (687)
Q Consensus 386 d~~tyn~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~----------------~~~A~~l 444 (687)
|-.+|-+.+.-|.. .+.++-...-++.|++.|+.-|..+|+.||+.+=|..- -+-+..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444433 24455555566677777777777777777776654322 2457899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Q 005628 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLR 484 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M~ 484 (687)
+++|+.+|+.||-.+-..||+++.+.+..- +..+++--|-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999999888653 4555555554
No 103
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.71 E-value=0.089 Score=57.20 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=93.1
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 556788999999999998875 553322 5566666777889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
++++.... .+-|......-.+.|.+.++.+.|+.+.+++... .|+. .+|..|..+|...|+++.|...++.|.
T Consensus 222 ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99888854 2346777777788889999999999999998865 4655 599999999999999999999988764
No 104
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=1.9 Score=47.05 Aligned_cols=123 Identities=16% Similarity=0.183 Sum_probs=89.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHH----H
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS----V 431 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~----~ 431 (687)
.+.-|.+++++++..|++-+.+ ++-.+..||-.-..+...++++.|.+.|+..... .|+ .+.-.+||+ -
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh
Confidence 3445777999999999998875 4555678898899999999999999999976643 232 111112221 1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+--.+++..|.+++....+..-+ ....|.+|-..-.+.|++++|+++|++-...
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11338899999999988664322 3567888989999999999999999986554
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.53 E-value=0.58 Score=56.77 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-Gi~pd~---~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s 266 (687)
...|-.-|......++++.|.+++++.... +++-.. -.|.++++.-- --|.-+...++|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------ 1521 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------ 1521 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH------
Confidence 478888888888889999999999888743 333222 23445554444 3344445556663
Q ss_pred ccccccCCCCCccc-hhccccccccccccccCCChhhHHHHHHHHHhc-CCCCCccccchhhHhhccccccCCCcchhcc
Q 005628 267 TELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 267 ~em~~~~g~~d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~-g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
+.. ..-|..+ |-.|..- |.+.+.+++|.++|+.|.++ |..+.+ |.
T Consensus 1522 -RAc---qycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~~v--W~--------------------- 1568 (1710)
T KOG1070|consen 1522 -RAC---QYCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTRKV--WI--------------------- 1568 (1710)
T ss_pred -HHH---HhcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchhhH--HH---------------------
Confidence 111 1114444 7888777 99999999999999999875 323322 21
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 423 (687)
. ..+.+.+..+-+.|..++.+..+.=.+- -+-...-.+..-.+.|+.+.+..+|+..... .+-..-
T Consensus 1569 -----------~-y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtD 1635 (1710)
T KOG1070|consen 1569 -----------M-YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTD 1635 (1710)
T ss_pred -----------H-HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Cccchh
Confidence 2 4566677777788888887766532111 1233444455556789999999999888765 333566
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~ 478 (687)
.|+..|+.=.++|+.+.+..+|++....++.|-. ..|.-.+..=-..|+-..++.
T Consensus 1636 lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1636 LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 7999999999999999999999999888887653 567777776666666554333
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.47 E-value=0.42 Score=41.80 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~ 431 (687)
+...+.+.|++++|.+.|+++..... ......+..+...+.+.|++++|...|+.+.... |+ ...+..+-..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHH
Confidence 56677889999999999999987532 1123566778999999999999999999988652 33 3457777788
Q ss_pred HHhCCChHHHHHHHHHHHHCC
Q 005628 432 FCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~g 452 (687)
+.+.|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999998874
No 107
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=2.4 Score=46.16 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=106.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-+.|.-.++.++|...|+.-.+-+. -....|+-+=+-|....+...|.+-++.-.+- .+-|-+.|=.|=.+|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 44778888899999999999887542 23567888888999999999999999987765 45688999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..-|+-.|++... ++| |...|.+|=++|.+.++.++|++-|..-..-
T Consensus 414 h~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999998876 444 7889999999999999999999999987765
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.53 Score=55.20 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
...+.||.- -+.++.|.++-++.. .+..|+.|-.+-. ..|.+.+|.+-|-
T Consensus 1079 ~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi----------- 1128 (1666)
T KOG0985|consen 1079 SAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI----------- 1128 (1666)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-----------
Confidence 444455432 245566655544432 3456677766666 6677888877773
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCCh
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (687)
.-+|...|--+|+. ..+.|.+++-.+.+..-.++.-+|.+-+-
T Consensus 1129 --kadDps~y~eVi~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e----------------------------- 1171 (1666)
T KOG0985|consen 1129 --KADDPSNYLEVIDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE----------------------------- 1171 (1666)
T ss_pred --hcCCcHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH-----------------------------
Confidence 22356668888888 88999999998888766666666665443
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-------------- 417 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-------------- 417 (687)
||-+|++.+++.+-.++.. .||+.-.-.+=+-|...|.++.|.-++.......
T Consensus 1172 ------Li~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1172 ------LIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred ------HHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5556666665554443321 2444444444444444444444444443211000
Q ss_pred ------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 418 ------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 418 ------~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
-.-+..||--+-.+|...+.+..| .|..-.+........-||..|-..|.+++...+++
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 001344555555555444443332 23233344455566777777777787777766655
No 109
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.38 E-value=0.14 Score=46.38 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
|+.++.++|-++++.|+++....+++.. -|+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4556667777777777776666666432 233222110 0000 1112345677777777777
Q ss_pred HHHhcCChHHHHHHHHHHHhccC-CCChhHHHHHHHHH
Q 005628 466 VSVEAGKGDRVYYLLHKLRTSVR-KVSPSTADVIAKWF 502 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~~~-g~~p~t~~~I~~~~ 502 (687)
+|+..|++..|+++++.....-. .++..+|..|..|+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777777776665522 12222665555553
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.32 E-value=0.41 Score=54.43 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=152.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.+.+.|-...|..+|+.+ ..|.-+|.+|+..|+-.+|..+..+-.+ -+||...|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 455777788899999998 8889999999999999998888877766 4788888888887766
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhc-CCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFS 317 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~-g~~P 317 (687)
..--+++|.+++. ..+.+. -..|+-+ ....++++++.+.|+.-.+. -+.+
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 3444678888875 111110 0011111 23367888888877643321 1111
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRM 396 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-~tyn~LI~~ 396 (687)
. +|-. .=.+..+.++++.|.+-|..-.. ..||- -.||.+-.+
T Consensus 520 ~----------------------------------~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 G----------------------------------TWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred h----------------------------------HHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 1 1111 22234466788888888877654 34554 579999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRVSV 468 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~ 468 (687)
|.+.++-.+|+..+.+-.+.+ .-+...|-.-+....+.|.+++|++.+..|.+... .-|..+...++....
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999999988776 45566677777778899999999999888765321 125555555555443
No 111
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=1.1 Score=49.61 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=87.5
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCc----chHHHHHHHHHh
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRL----RSYGPALSVFCN 434 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~----~ty~~lI~~~~~ 434 (687)
-|.+.+.++.|.++|.+-... .+-|+..++-+=-..-..+.+.+|...|..-... .+.+.. -+++.|=+.|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 466677888888888876643 2335566666666666678888888888765521 122222 345666677888
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+..++|...|+..+.. ..-|..+|.++--.|...|+++.|.+.|++-...
T Consensus 468 l~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 88899998888887665 3447778888888888889999998888876654
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.18 E-value=0.16 Score=57.16 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-+.|+..|+++.|.++|-+- ..++--|.+|.++|+|+.|+++-++. .|-......|-+--.-+-++|+
T Consensus 771 iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcc
Confidence 557777788888888877653 23566777888888888887776543 3333445555555555556666
Q ss_pred hHHHHHHH
Q 005628 438 VDKACSVE 445 (687)
Q Consensus 438 ~~~A~~l~ 445 (687)
+.+|.+++
T Consensus 840 f~eaeqly 847 (1636)
T KOG3616|consen 840 FAEAEQLY 847 (1636)
T ss_pred hhhhhhee
Confidence 66666555
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.06 E-value=3.3 Score=49.67 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=83.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-.+|-+.|+.++|..+++++.+.. +-|..+.|-+-..|+.. ++++|.+++...... |....+
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq 184 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQ 184 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhc
Confidence 6678888899999999999998876 55788889999999998 999999988876654 333344
Q ss_pred hHHHHHHHHHHHH------------------C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLE------------------H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~------------------~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...+.++|.++.. . |..--+.++-.|...|-...+++++..+|+.+.+.
T Consensus 185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 4444444444433 2 33334556666777888888999999999998887
No 114
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=5.4 Score=43.59 Aligned_cols=282 Identities=11% Similarity=0.054 Sum_probs=158.6
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
+..+++..|.++|+.-. ...|+...|++.|+.=.+-..++.|..+|++.+- +.|++.+|--...-=-
T Consensus 152 E~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH---
Confidence 45678899999998752 4678889999999999999999999999998874 4588888766655544
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
++|.+..|..++. .-++..|-. +...+++.-.- -.....++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 7788887777774 111110111 11112222111 11223344444444332221 122
Q ss_pred ccccchhhHhhccc-----------------cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC
Q 005628 319 GHMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (687)
Q Consensus 319 ~~ty~~~~li~g~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (687)
..+- .|-.+|. ...+.-++.+++. -+-|-.+|-. .+..--..|+.+...++|+.....
T Consensus 277 ~rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 277 GRAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred ccHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2111 1222221 0111112222221 1123334444 444455567778888888877654
Q ss_pred CCCCC-HH-HHHHHHH-----HH---HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH----hCCChHHHHHHHHH
Q 005628 382 EVPMN-EA-SLTAVGR-----MA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEH 447 (687)
Q Consensus 382 gi~pd-~~-tyn~LI~-----~~---~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~----~~g~~~~A~~l~~~ 447 (687)
++|- .. -|---|- +| ....+++.+.++++...+. ++-...||.-+=-.|+ ++.++..|.+++..
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3331 11 1111111 11 1256777777777776663 4445566665554443 45677777777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. |.-|-.-+|-..|..=.+.+.+|....|+.+..+-
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 43 55677777777777777777777777777777766
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=1.4 Score=45.25 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=151.1
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll-~~~~~~~ 240 (687)
+..+..+|.+++..--++.. + +....+.|-.+|-...++..|-..|+++-.. -|-..-|..-- ..+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY--- 89 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY--- 89 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH---
Confidence 45677788888777644321 1 2266777777888888888888888887643 34333332110 0111
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCC-ccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d-~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (687)
+.+...+|+++.. .|.++..+.+ .+-.-+-| .-+.+++-.+..+.++....|-
T Consensus 90 -------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAI--------kYse~Dl~g~rsLveQlp~en~---- 143 (459)
T KOG4340|consen 90 -------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAI--------KYSEGDLPGSRSLVEQLPSENE---- 143 (459)
T ss_pred -------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHH--------hcccccCcchHHHHHhccCCCc----
Confidence 3445667777763 2222100000 00011111 1134445555555544432210
Q ss_pred cccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005628 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAM 398 (687)
Q Consensus 320 ~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~ 398 (687)
- .+.+. .-.-..+.|+.+.|.+-|+...+- |..| ...||.-+..|
T Consensus 144 --A-----------------------------d~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy- 189 (459)
T KOG4340|consen 144 --A-----------------------------DGQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY- 189 (459)
T ss_pred --c-----------------------------chhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-
Confidence 0 00001 112235788999999999887764 5554 56788776554
Q ss_pred HcCChHHHHHHHHHHHHcCCC-------------CCcch--------HHHHHHHH-------HhCCChHHHHHHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSVF-------CNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~-------------Pd~~t--------y~~lI~~~-------~~~g~~~~A~~l~~~M~~ 450 (687)
+.|+.+.|++...++.++|++ ||+.+ -+.++.++ .+.|+.+.|.+-+-+|.-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 568889999999999888764 34332 23344433 467888888888888853
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhH-HHHHHHHHcCHHHHHhh
Q 005628 451 H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLG 511 (687)
Q Consensus 451 ~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t-~~~I~~~~~~~~~~~a~ 511 (687)
+ .-..|.+|..-+--.- ..+++.+..+=+..+.... .+.+.| .|++.-+|+.....-|.
T Consensus 270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 3 3445667765432221 2333444444444444442 244445 46677888877654443
No 116
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.87 E-value=2.3 Score=47.96 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=160.1
Q ss_pred hcCCCchhhhHHHhhhcCCCCCC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---h
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSK-KDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS---S 238 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~-g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~---~ 238 (687)
.++..+-..+|.+.+.. +.|.. .-.|. ..|..+-..|-..|+++.|..+|++..+...+- -+-|-..+| .
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~----v~dLa~vw~~wae 433 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT----VEDLAEVWCAWAE 433 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc----hHHHHHHHHHHHH
Confidence 45666777778777543 22222 12333 578888899999999999999999987655432 222233333 2
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccC------CCC--------CccchhccccccccccccccCCChhhHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMD--------NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~------g~~--------d~~tyn~Li~~~~~~~~~~~~g~~~~A~ 304 (687)
... +..+++.|..+..-- ..+.... |-. ....|.-.++- .-..|-++...
T Consensus 434 mEl------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk 497 (835)
T KOG2047|consen 434 MEL------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTK 497 (835)
T ss_pred HHH------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHH
Confidence 111 445566666665310 0111100 000 11124444444 44566778888
Q ss_pred HHHHHHHhcCCCCCccccchhhHhhc--cccccCCCcchhcccCC----CCChh-hhHHHHHHHHHhhc--cHHHHHHHH
Q 005628 305 STFNEKENLGQFSNGHMKLNSQLLDG--RSNLERGPDDQSRKKDW----SIDNQ-DADEIRLSEDAKKY--AFQRGFEIY 375 (687)
Q Consensus 305 ~lf~eM~~~g~~Pd~~ty~~~~li~g--~~~~a~~~~~~m~~~g~----~pd~~-tyn~~lI~~~~k~g--~~~~A~~lf 375 (687)
.+++.+.+..+.--.+..|...+++- |-.++.+++ .+|+ .|++. .||+.|...-.+-| .+++|..+|
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y----ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY----ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH----HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88888887765433333331122221 112222222 2332 24443 46664444333433 689999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 376 EKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 376 ~~M~~~gi~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
++-.+ |++|...-+--|+-+- -+.|....|+.+++.... ++++. ...||+.|.-....=-+....++|++..+.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99888 7776544333332221 125778888888887443 34443 357888887666554455556667666654
Q ss_pred CCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHH
Q 005628 452 GVYPEEPELEALLRVS---VEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 452 gv~pd~~ty~~Li~~~---~~~g~~~~A~~ll~~M~ 484 (687)
-||...-..-|+.- ++.|.+++|..++..-.
T Consensus 652 --Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 652 --LPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred --CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 55554443333322 67788888877766543
No 117
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.85 E-value=0.27 Score=44.58 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 005628 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g 471 (687)
.+.|+..+-.+++.+|+.+|++..|+++.+...+. ++..+..+|..|+.-.-..-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999987664 78888999999987664433
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.75 E-value=0.8 Score=52.19 Aligned_cols=213 Identities=11% Similarity=0.095 Sum_probs=151.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~ 275 (687)
.+-..+...|-...|+.+|++.. .|--+|..|+ ..|+.++|..+.. +++...
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~----------~lg~~~kaeei~~------q~lek~--- 454 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYL----------LLGQHGKAEEINR------QELEKD--- 454 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH----------HhcccchHHHHHH------HHhcCC---
Confidence 44466778899999999998864 5677888888 6778888888874 333311
Q ss_pred CCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhH
Q 005628 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (687)
Q Consensus 276 ~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn 355 (687)
+|..-|..|-+. ......++.|.++++..-.+- .-|
T Consensus 455 ~d~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r~--------------------------------- 490 (777)
T KOG1128|consen 455 PDPRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QRS--------------------------------- 490 (777)
T ss_pred CcchhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HHh---------------------------------
Confidence 145557777777 667777788888887543220 000
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHh
Q 005628 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCN 434 (687)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~ 434 (687)
+-......++++++.+.|+.-.+-. +.-..||=.+=.+.-+.+++..|.+-|..... ..||. ..||.+=.+|.+
T Consensus 491 --~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 491 --LALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred --hccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHH
Confidence 0011123578888888887544321 12334565555566678999999999987664 35654 689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+-.+|+..+.+..+.. .-+.-.|.-.+....+.|.+++|++.+++|.+.
T Consensus 566 ~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999887 445566766777779999999999999887654
No 119
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.72 E-value=0.05 Score=45.29 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHH
Q 005628 366 YAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~ 443 (687)
|+++.|..+|+++.+.... ++...+-.+..+|.+.|++++|..+++. .+ +.|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666666666554321 1333333355666666666666666655 11 11211 222222344555566666665
Q ss_pred HHHH
Q 005628 444 VEEH 447 (687)
Q Consensus 444 l~~~ 447 (687)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.66 E-value=1.5 Score=44.17 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=96.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.+....+.|++.+|...|.+...- -++|..+||.+=-+|.+.|+.++|..-|.+..+.- .-+...+|.|--.|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC
Confidence 566777889999999999988763 46788999999999999999999998888776652 1244567777777888899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.+.|..++.+....+.. |..+-.-|.-.....|++++|..+-..
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999988776544 555556677777889999999887554
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=1.2 Score=45.57 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=103.7
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhH
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (687)
+.|+.+.|.+-|. +-..-+|..+.+.||.-+.- -+.++.+.|+++..++.++|++-.. -++.+..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH-------y~~~qyasALk~iSEIieRG~r~HP-ElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH-------YSSRQYASALKHISEIIERGIRQHP-ELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH-------HhhhhHHHHHHHHHHHHHhhhhcCC-ccCccce
Confidence 8899999999994 44444477788889887654 4678899999999999999965221 1110000
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHH-------HHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-------SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMS 399 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI-------~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~ 399 (687)
.+|-- ++. +.-..+..-+.|+ .-+.+.|+.+.|.+-+-.|.-+ .-..|.+|...+.-.-+
T Consensus 221 tegiD--vrs---------vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~- 288 (459)
T KOG4340|consen 221 TEGID--VRS---------VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM- 288 (459)
T ss_pred eccCc--hhc---------ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-
Confidence 11000 000 0000001111122 2345677888888888888643 23467777765533222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
.+++.+..+-+.-+...+- --..||..++--|||+.-++.|-.++.+=
T Consensus 289 ~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3445444544444444321 23478889999999999999998888764
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.40 E-value=1.1 Score=44.12 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~-~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
.|.. |-..|...|++++|...|++..... +-|...+..+-.++ ...|+ .++|.+++++..+..- -+...+..+-
T Consensus 75 ~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA 151 (198)
T PRK10370 75 QWAL-LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLA 151 (198)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444 6678889999999999999988764 23677888888764 67777 5999999999887642 2667888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
..+.+.|++++|...|+.+.+. ..|+..-+. +|.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~-~i~~ 186 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH-HHHH
Confidence 8999999999999999999876 345554443 4444
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.29 E-value=0.91 Score=42.02 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=30.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKR 412 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~ 412 (687)
|-..+...|++++|+..++...... .....+..+=+.|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455566677777777775533222 2233445555566667777777666653
No 124
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.27 E-value=0.086 Score=43.84 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (687)
.|+++.|+.+++.+.+..- .|+...+-.+-.+|.+.|+.++|.++++. .+ +.|+. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999987632 22344455578899999999999999988 22 22322 33345567788999999999
Q ss_pred HHHHH
Q 005628 478 YLLHK 482 (687)
Q Consensus 478 ~ll~~ 482 (687)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.25 E-value=1.5 Score=41.91 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL 464 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li 464 (687)
..|..+-..+...|++++|...|++.....-.+. ...|..+-..+.+.|+.++|...+++..+. .| +...+..+-
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555666666777777777776654322121 245666666667777777777777666553 23 334444444
Q ss_pred HHHHhcCC--------------hHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 005628 465 RVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (687)
Q Consensus 465 ~~~~~~g~--------------~~~A~~ll~~M~~~~~g~~p~t~~~I~~~ 501 (687)
..|...|+ +++|.+++++.... .|+.|..+..|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~ 160 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNW 160 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHH
Confidence 55555554 45666666665554 45544443333
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.07 E-value=3.1 Score=50.86 Aligned_cols=272 Identities=9% Similarity=-0.009 Sum_probs=158.0
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HHHHHHHHH
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--K-LG--QYHYNVLLY 234 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi--~-pd--~~tyn~Ll~ 234 (687)
...++.++|...++.-... .+.. ..+ -...++.+-..+...|++++|...+.+.....- . +. ..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~--~~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAE--LPLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhc--CCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3566788888888876432 1111 111 123456666677889999999999998874311 1 11 223333444
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCC----ccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d----~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
.+. ..|++++|...+.-. .+.....+..+ ...+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 444 678999998887410 11111112111 1123233233 55669999999988876
Q ss_pred HhcCC--CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CCC
Q 005628 311 ENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (687)
Q Consensus 311 ~~~g~--~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~ 384 (687)
....- .|... ...+.. +-..+...|+.++|.+.+++.... +..
T Consensus 600 l~~~~~~~~~~~------------------------------~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQQ------------------------------LQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchHH------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54211 01100 111222 445667889999999999887542 111
Q ss_pred CCH-HHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC
Q 005628 385 MNE-ASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (687)
Q Consensus 385 pd~-~ty-n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p 455 (687)
... ... ...+..+...|+.+.|...+............ ..+..+-..+...|+.++|..+++..... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 010 11234455689999999998765432111110 11345566778899999999999887653 3333
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 456 d-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+ ..++..+-.++.+.|+.++|...|.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 245666667778999999999999988765
No 127
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.00 E-value=8 Score=47.23 Aligned_cols=276 Identities=13% Similarity=0.012 Sum_probs=152.0
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~--tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~Ll~~ 235 (687)
..++.++|..++......-...+.+..|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4456677777776653321111101112211 1122223456789999999999998763111122 223333333
Q ss_pred HHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCC--ccchhccccccccccccccCCChhhHHHHHHHHHhc
Q 005628 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (687)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d--~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (687)
+. ..|++++|...+.-. .+.....|-.. ...++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 44 678999998888411 01111111111 1123333334 67789999999988876542
Q ss_pred CC---CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CCCC--C
Q 005628 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (687)
Q Consensus 314 g~---~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p--d 386 (687)
.- .++.. .....+.. +-..+...|++++|...+++.... ...+ .
T Consensus 561 ~~~~~~~~~~----------------------------~~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLP----------------------------MHEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhcccccc----------------------------HHHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 00000 00111222 334556679999999999887542 1112 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCcchH-----HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-----~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--- 457 (687)
...+..+...+...|+.++|.+.+.......- ......+ ...+..+...|+.+.|.+.+............
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 34455566678889999999999988754310 0111111 11234456689999999998776542211111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+..+-.++...|+.++|..++++....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12345667788899999999999987654
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.99 E-value=1.6 Score=47.76 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=86.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~ 440 (687)
+...|.+++|+..++.+... .+-|+.-+....+.+.+.++.++|.+.++.+... .|+. ...-.+-.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34667888888888887764 2345666666777888888888888888887764 4663 334445567788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|..+++.-... .+-|...|..|-.+|...|+..++..-.-++-..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 88888877654 4557788888888888888888777766655443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.94 E-value=1.8 Score=50.90 Aligned_cols=124 Identities=8% Similarity=-0.079 Sum_probs=91.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~ 435 (687)
|-......|..++|..+++...+. .|| +.....+...+.+.+++++|+...+..... .|+..+ ...+-.++...
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 556667788888888888888764 455 456677788888888888888888887765 355544 44444566677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|+.++|.++|++....+ .-+..++..+=..+-+.|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888732 223677777778888888888888888877654
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.91 E-value=1.6 Score=48.17 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=94.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH-HHHcCCCCCcchH-HHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~ty-~~lI~~~~~ 434 (687)
.|+.--+..-++.|..+|.+..+.+..+ ++++++++|.-||. ++..-|+++|+- |+.. +|.-.| ..-++-+..
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHH
Confidence 5666667777888888888888887777 78888888888775 677788888875 3333 344444 456677777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++-..|..+|+..+..++.||. ..|..+|+.=..-|++..+.++-+++...
T Consensus 448 lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 78888888888888888666654 67888888888888888888888777665
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.83 E-value=7.6 Score=46.00 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=84.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~--pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--y~~lI~~~~ 433 (687)
|-+.|.-.|+++.++.+...+...-.. .-...|=-+-++|-..|++++|...|.+-. +..||-.+ +--|-..|.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHH
Confidence 667888889999999998888764321 112346667788888999999999886544 44555533 445778889
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC----ChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAG----KGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g----~~~~A~~ll~~M~~~ 486 (687)
+.|+++.+...|+...+. .||. .|.-+|=..|+..+ ..++|..++.+-...
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 999999999999988764 3443 44444444444443 446666666665554
No 132
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.82 E-value=0.16 Score=51.43 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=63.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------ChHHHHHHHHHHHHcCCCCCcchHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGP 427 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g----------------~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (687)
+.+.++-...-++.|++.|+.-|..+|+.||+.+=|.. .-+-+++++++|...|+.||..+-..
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDI 163 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHH
Confidence 34567777788899999999999999999999765532 22348899999999999999999999
Q ss_pred HHHHHHhCCCh
Q 005628 428 ALSVFCNNGDV 438 (687)
Q Consensus 428 lI~~~~~~g~~ 438 (687)
||++|.+.+..
T Consensus 164 lvn~FGr~~~p 174 (406)
T KOG3941|consen 164 LVNAFGRWNFP 174 (406)
T ss_pred HHHHhcccccc
Confidence 99999988764
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.77 E-value=1.5 Score=41.78 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~ 434 (687)
+-..|...|++++|...|++.......+. ...|..+...+.+.|++++|...+.+.... .|+ ...+..+-..+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 55677788999999999999987543332 467888999999999999999999988764 343 4455566666766
Q ss_pred CCC
Q 005628 435 NGD 437 (687)
Q Consensus 435 ~g~ 437 (687)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 666
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.75 E-value=0.95 Score=48.91 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=76.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+...|++++|.++|++...... -+...|..+-.+|.+.|++++|+..++...... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345577899999999999887542 356778888888889999999999998887652 124567777778888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+|...|+...+ +.|+......++
T Consensus 88 eA~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999988876 346555555444
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.73 E-value=1.3 Score=50.32 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
-.....+.+|+.+++.++.+... .--|.-+.+.|+..|+++.|.++|-+ .+ -++-.|..|.++|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccccHHHH
Confidence 33444555555555555543221 12244455555666666666665542 11 245555566666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
+++-++. +|-......|-+--.-+-+.|++.+|.+++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 5554433 2333333444444444455555555555543
No 136
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.55 E-value=1.6 Score=47.13 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH-HHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALS 430 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI~ 430 (687)
+|-. .|+.-.+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|..+|+-=... -||...| +-.+.
T Consensus 399 v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4444 6777778888899999999999999 67999999999998875 7788899999753222 3676665 45667
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
-+.+.++-+.|..+|+.-.++ +.-+ ...|..+|+.=.+.|++..|+.+=++|... .+..++..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 778889999999999955443 2223 568999999999999999999999999998 777776655
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.55 E-value=5.8 Score=45.07 Aligned_cols=146 Identities=8% Similarity=-0.038 Sum_probs=97.6
Q ss_pred cCCCCChhhhHHHHHHHHHh--h---ccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--------ChHHHHHHH
Q 005628 345 KDWSIDNQDADEIRLSEDAK--K---YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMV 410 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k--~---g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g--------~~~~A~~l~ 410 (687)
.....|...|.. .+.+... . +..+.|..+|++..+. .|| ...|..+..++.... ++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344556666766 5554332 2 2477999999999875 355 344554444333321 123334444
Q ss_pred HHHHHc-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005628 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (687)
Q Consensus 411 ~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (687)
...... ....+...|.++--.+...|+.++|...++...+.+ |+...|..+-..|...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 123344778777666667899999999999998865 78899999999999999999999999988776 5
Q ss_pred CChhHHHH
Q 005628 490 VSPSTADV 497 (687)
Q Consensus 490 ~~p~t~~~ 497 (687)
+...||-.
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 56557644
No 138
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.50 E-value=0.22 Score=39.24 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=27.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
+.|++++|.++|+++..... -|...+-.+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666554321 14444555566666666666666666555543
No 139
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=7.1 Score=43.57 Aligned_cols=244 Identities=12% Similarity=0.015 Sum_probs=130.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
+.......-+-|-..+++.+.+++++...+. .++....+..=|..+... | +...+|.+. ..|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el----------~---~~n~Lf~ls----h~L 304 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYEL----------G---KSNKLFLLS----HKL 304 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHh----------c---ccchHHHHH----HHH
Confidence 3355556667777889999999999998754 244555555566655532 2 233334211 333
Q ss_pred cccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHH--hcCCCCCccccc------------------hhhHh
Q 005628 270 GDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE--NLGQFSNGHMKL------------------NSQLL 328 (687)
Q Consensus 270 ~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~--~~g~~Pd~~ty~------------------~~~li 328 (687)
.+ ..+ ..++|=++=-- |-..|+..+|.+.|..-. ....-|--+.|. ...++
T Consensus 305 V~--~yP~~a~sW~aVg~Y------Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 305 VD--LYPSKALSWFAVGCY------YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HH--hCCCCCcchhhHHHH------HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 33 233 45555444333 445567777777776432 222222211111 11222
Q ss_pred hccc----------------cccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CCCC----
Q 005628 329 DGRS----------------NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM---- 385 (687)
Q Consensus 329 ~g~~----------------~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p---- 385 (687)
.|+- +.|+.+|.+.. ++-| |...++. +=-.....+.+.+|...|+.-... .+-+
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 2221 22333333222 2333 3444444 322233456677777777665521 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
-..+++.|=..|-+.+..++|+..++.-... .+-|..+|+++=-.|...|+++.|.+.|...+. +.||..+-..|+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 1234566666677777777777777765554 334666777777777777777777777776543 5677666666665
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.30 E-value=3 Score=49.10 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=96.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
..+.|++++|..+++...+. .||.... -..+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 66789999999999877664 3444332 2337788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+++..... +-+....+.+-.++.+.|+.++|.++|++....+ |+ ..++..+=..+-+.|+.++|...|+...+.
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998764 2345667778888999999999999999998732 44 677888888889999999999999988664
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.29 E-value=1.5 Score=41.69 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (687)
..+...|++++|...|++.......| ...+|..+-..+...|+.++|+..++....
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555556665555554332111 123455555555555555555555555443
No 142
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.17 E-value=0.37 Score=50.18 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
.+|..+++..-+.+.++.|..+|.+..+.+ +..+++...++|..+ ..++.+.|.+||+...+. +.-+...|...|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998653 556666666666544 347778899999999876 66688889999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+.++.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999998876
No 143
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.11 E-value=0.48 Score=43.80 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (687)
...++..+...|++++|..+...+.... +-|...|-.+|.+|...|+..+|.++|+.+.. -|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444445555555666555555555431 22445555556666666665555555555422 255555443
No 144
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.10 E-value=20 Score=41.02 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=167.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccc
Q 005628 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG--QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265 (687)
Q Consensus 188 ~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd--~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~ 265 (687)
.-+-..|-.=-.+|-+.|.+-.+..+....+.-|+.-. -.||+.--..|. +.+.++-|..+|...
T Consensus 476 ~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~----------k~~~~~carAVya~a--- 542 (913)
T KOG0495|consen 476 EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE----------KRPAIECARAVYAHA--- 542 (913)
T ss_pred eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH----------hcchHHHHHHHHHHH---
Confidence 33336777777788888888888888887777666522 356777777777 666677666666410
Q ss_pred cccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcc-------ccccCC
Q 005628 266 STELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR-------SNLERG 337 (687)
Q Consensus 266 s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~-------~~~a~~ 337 (687)
+. -++ +...|.-.... --..|..+.-..+|++....- |-.-.+ .|+-+- ...|+.
T Consensus 543 ---lq---vfp~k~slWlra~~~------ek~hgt~Esl~Allqkav~~~--pkae~l---wlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 543 ---LQ---VFPCKKSLWLRAAMF------EKSHGTRESLEALLQKAVEQC--PKAEIL---WLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred ---Hh---hccchhHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhC--CcchhH---HHHHHHHHHhcCCcHHHHH
Confidence 10 111 34445555444 445666666666666655431 221111 111110 011111
Q ss_pred CcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 338 PDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 338 ~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
++...... .| +...|-. -+.--..+..+++|..+|.+-.. ..|+.-.|.--+...--.+..++|.+++++..+.
T Consensus 606 il~~af~~--~pnseeiwla-avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 606 ILDQAFEA--NPNSEEIWLA-AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHh--CCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 11111110 11 1122222 34445556666666666666554 3355555554444444556666676666655443
Q ss_pred CCCCCcch-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-H
Q 005628 417 GINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-T 494 (687)
Q Consensus 417 g~~Pd~~t-y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t 494 (687)
-|+-.- |-.+=..+-..++++.|.+.|..=.+. ++-.+..|-.|-+.=-+.|.+.+|..+|++-+-+ .|... .
T Consensus 681 --fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~l 755 (913)
T KOG0495|consen 681 --FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALL 755 (913)
T ss_pred --CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchh
Confidence 233322 222222333344444444444332211 2333445656666667788888999999988777 44444 4
Q ss_pred H-HHHHHHHcCHHHHHhhcccchhhHHHHHhh---hcCCcccccccCCCCccEEEeeeecCCCcccc
Q 005628 495 A-DVIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKC 557 (687)
Q Consensus 495 ~-~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~---~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~ 557 (687)
| ..|..-.+.|....|. -.+..|+. ..|-+|-+-.|.--.|..-|- ++..--.|..
T Consensus 756 wle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~ 815 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEH 815 (913)
T ss_pred HHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccC
Confidence 4 3366656665544443 23334433 446677777777667776555 3333334444
No 145
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.92 E-value=0.41 Score=37.60 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=27.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|++++|.++|+.+....-. +...+-.|..+|.+.|++++|..+|+++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555543211 4444445555555566666666555555555
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=9.8 Score=42.76 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~--------~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.....|.+++...-+....-..++.=+++......|+++.|.+++. .+.+.+..|-++. +++.-+.+.++
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~ 432 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKD 432 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccC
Confidence 3466777777766654333334556666777888999999999999 6666677676554 56677788888
Q ss_pred hHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHH
Q 005628 438 VDKACSVEEHMLEH--GVYPEEPELEALL----RVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKE 506 (687)
Q Consensus 438 ~~~A~~l~~~M~~~--gv~pd~~ty~~Li----~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~ 506 (687)
.+.|-.++.+.... .-.+......+++ ..-.+.|..++|..+++++... .+... ....+.+++.-..
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhcCH
Confidence 88888888776442 1112223333333 3336789999999999999986 22222 3445777776654
No 147
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=6.3 Score=39.92 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=98.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-----H
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-----~ 432 (687)
++..+.-.|.+.-...++++..+...+-+......|.+.-.+.||.+.|...|+...+..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 55555556677778888999888877788899999999999999999999999988876556677777777653 3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.-.++...|...|.++....-. |.+.-| +|+..| .|+..+|.+.+..|... -|.|.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccc
Confidence 3457888888888887665322 222222 444444 58899999999999998 55555
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.49 E-value=2.2 Score=46.16 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
..+...|++++|+++|++..... .-+...|..+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45567899999999999998753 2345677778889999999999999999998753 235677888888999999999
Q ss_pred HHHHHHHHHHhc
Q 005628 475 RVYYLLHKLRTS 486 (687)
Q Consensus 475 ~A~~ll~~M~~~ 486 (687)
+|...|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 999999998877
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.35 E-value=2.8 Score=43.69 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHhh-ccHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCcch-HHHHH
Q 005628 362 DAKK-YAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLRS-YGPAL 429 (687)
Q Consensus 362 ~~k~-g~~~~A~~lf~~M~~----~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-----Pd~~t-y~~lI 429 (687)
|-.. |++++|.+.|++-.+ .|-.- -..++.-+...+.+.|++++|.++|++....-.. .++.. |-..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3344 566777776665543 22111 1235566677788888888888888887654322 22221 22233
Q ss_pred HHHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVS 467 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~--gv~pd--~~ty~~Li~~~ 467 (687)
-++...||...|.+.|++.... ++..+ ......||.+|
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 3555568888888888887644 22222 33445566664
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.07 E-value=2.5 Score=40.01 Aligned_cols=111 Identities=17% Similarity=0.078 Sum_probs=75.3
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 371 GFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 371 A~~lf~~M~-~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
+...+..+. ..+-.--...|..+...+...|++++|...|+......-.| ...+|..+-..+...|+.++|.+.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444442 23322335667778888888999999999999887653222 234788888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 005628 448 MLEHGVYPEEPELEALLRVSV-------EAGKGDRVYYLLHK 482 (687)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~-------~~g~~~~A~~ll~~ 482 (687)
..... +....++..+...+. ..|++++|...+++
T Consensus 98 Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 98 ALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 87652 223455666666666 77787766555543
No 151
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=17 Score=40.04 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=86.0
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
.-.+++++|..=|++-..-. +-++..|--+--+.-+.+++++++..|++.+++ ++--...||-.-..+...+++++|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 34467888998888877642 124456666666667889999999999998876 5555678888889999999999999
Q ss_pred HHHHHHHHC-----CCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 443 SVEEHMLEH-----GVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 443 ~l~~~M~~~-----gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|+...+- ++..+..+ --+++-.= -.+++..|..|+++-.+-
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc
Confidence 999987653 22222222 22222221 338899999999987766
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=18 Score=43.34 Aligned_cols=249 Identities=9% Similarity=0.039 Sum_probs=143.7
Q ss_pred hhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcccCCcccCC
Q 005628 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPAK 248 (687)
Q Consensus 171 ~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~--Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k 248 (687)
++.++.+..++.... .|+ .-+..+.++..++-+.+-+++++...-. -+.-+.-.-|.||-...++.
T Consensus 968 qLiDqVv~tal~E~~--dPe--~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-------- 1035 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQ--DPE--EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-------- 1035 (1666)
T ss_pred HHHHHHHHhcCCccC--ChH--HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC--------
Confidence 455555555443222 333 4456678899999999999999998733 22334444555555444322
Q ss_pred CCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHh
Q 005628 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLL 328 (687)
Q Consensus 249 ~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li 328 (687)
..+..+... -.++.+.++. -++ ...++-+++|..+|+...-.+ ...+ .||
T Consensus 1036 ---~trVm~YI~--------rLdnyDa~~i--a~i----------ai~~~LyEEAF~ifkkf~~n~-----~A~~--VLi 1085 (1666)
T KOG0985|consen 1036 ---RTRVMEYIN--------RLDNYDAPDI--AEI----------AIENQLYEEAFAIFKKFDMNV-----SAIQ--VLI 1085 (1666)
T ss_pred ---hHHHHHHHH--------HhccCCchhH--HHH----------HhhhhHHHHHHHHHHHhcccH-----HHHH--HHH
Confidence 112222221 0111111111 011 334556778888877543211 1111 222
Q ss_pred hccc--cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005628 329 DGRS--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (687)
Q Consensus 329 ~g~~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A 406 (687)
+-.. +.|... ..+--+| .+|+. +-.+-.+.|.+.+|.+-|-+. -|...|.-+|+...+.|.+++-
T Consensus 1086 e~i~~ldRA~ef----Ae~~n~p--~vWsq-lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1086 ENIGSLDRAYEF----AERCNEP--AVWSQ-LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHhhhHHHHHHH----HHhhCCh--HHHHH-HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 2111 011000 0011112 24555 767777888888888777553 3678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
.+.+...++..-.|.+. +.||-+|++.+++.+-.++. .-||..-...+=+-|...|.++.|.-++...
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 88887777776666655 57899999999887765554 3467666666667777777777666665544
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.88 E-value=1.7 Score=46.00 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=82.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.|.-+...|....|.++-.+.+ .||..-|-..|++|+..++|++-..+... . -..+-|-+++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 4556667888888888877664 48999999999999999999987776432 1 234889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
..+|......+ ++..-+..|.++|++.+|.+.--
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999888772 33667888899999998876533
No 154
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.80 E-value=3.3 Score=45.16 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=93.8
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
=-..|++..|.++|+.-.+ ..||...|++.|+.=.+-..++.|..+++...- +.|++.+|---..-=-++|.+..|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 3456788999999987664 579999999999999999999999999998875 459999998888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~ll~~M~~~ 486 (687)
..+|+...+. .-|...-..|+-++ .++..++.|.-++..-.++
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999887653 12344445555555 4566778888888877776
No 155
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.25 E-value=32 Score=39.39 Aligned_cols=117 Identities=11% Similarity=0.008 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
|..++-..+|++.... ++-..+-|-....-+-..|++..|..++....+..- -+...|-..+.-...+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHH
Confidence 4444444444444433 222333444444444444555555555544443311 12334444444444555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..... ..|+..+|.--+...--.+..++|.+++++-...
T Consensus 642 akar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 642 AKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 44433 2344444444444444444555555555444433
No 156
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.06 E-value=16 Score=41.22 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHH--HHHHH--h
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LSVFC--N 434 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l--I~~~~--~ 434 (687)
|+.+.+.|++++|.+..+++...+ +-|...+-.-+-++.+.+++++|+.+.+. .+ -..+++.. =.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 577888999999999999998766 45566777777888999999999966543 22 11223333 45555 6
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+..++|...++ |+.++.. +...=-..+-+.|++++|+.+++.+..+
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 789999998887 4444433 4444456678899999999999999776
No 157
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.95 E-value=5.1 Score=44.46 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 370 RGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 370 ~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
...++++++... .+.|+ .+|..+|+.--+..-+..|..+|.+..+.+..+ +++.++++|..+|. ++-+-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 334444444443 23343 467777777778888899999999999888777 88999999998886 677889999986
Q ss_pred HHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhccCCCChh----HHHHHHH
Q 005628 448 MLEHGVYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS----TADVIAK 500 (687)
Q Consensus 448 M~~~gv~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~----t~~~I~~ 500 (687)
=..+ -+|...| ...++.+...++-..|..||++...+ +++++ .|+.+..
T Consensus 427 GLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 427 GLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHHHHH
Confidence 4433 1343333 56788888899999999999999988 77766 5655333
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.92 E-value=6.1 Score=40.68 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc----chHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELE 461 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~ 461 (687)
..|...+..+.+.|++++|...|+.+... .|+. ..+--+-..|...|+.++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555567777777777777654 2443 2444555667777888888888877765311 11122333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.+...+...|+.++|..+|+++... .+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3445566778888888888888777 44433
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.79 E-value=12 Score=38.05 Aligned_cols=158 Identities=8% Similarity=-0.000 Sum_probs=96.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++.... -|+.. +. ..+ . -.+..+|.+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~-~a----~~a----------------------~--l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGP-YS----QQV----------------------Q--LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCh-HH----HHH----------------------H--HHHHHHHHhcCCHHHHHH
Confidence 55689999999999998874 33331 11 000 0 015678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH--c---------------CC---hHHHHHHHHHHHHcCCCCCcc------hHH-
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSLGINPRLR------SYG- 426 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~Pd~~------ty~- 426 (687)
.|++..+....-..+-|.-.+.|.+. . .+ ..+|+..|+.+.+. -|+.. ..-
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999886544334456666666552 1 12 23566666666554 24331 111
Q ss_pred -----------HHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 427 -----------~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
.+..-|.+.|....|..=|+.+.++ +........-.|+.+|.+.|..++|.....-+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1223366677777777777777665 344445556667777777777777776665544
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.70 E-value=1.2 Score=34.72 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+.+.|++++|.++|+..++.. .-+...+..+-..+...|++++|..+|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556666777777777666654 114455555666666677777777776666554
No 161
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.41 E-value=4.7 Score=37.11 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCCChh
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS---VRKVSPS 493 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---~~g~~p~ 493 (687)
....++..+...|+.++|..+.+.+.... +.|...|..||.+|...|+..+|.++|+++... ..|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 34567777888999999999999998764 448889999999999999999999999988542 2255555
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.24 E-value=6.8 Score=35.14 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=62.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---cchH-HHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSY-GPALSVFC 433 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty-~~lI~~~~ 433 (687)
.++-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++..... |+ .... ..+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 345567788888888888887776544 2334445556667788888888888766541 43 1111 11223556
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
..|+.++|.+.+-.... ++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 67888888777655432 33445665555554
No 163
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.24 E-value=32 Score=39.25 Aligned_cols=271 Identities=10% Similarity=-0.018 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
..|-...-+.--.|+...|..+.++..+.- -.|+...|.-....+-+.. + -.+.|..+.|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~---i-~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ---I-LIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH---H-HHHcccHHHHHHHHH--------hh
Confidence 678888888888899999999999998765 3677777766554444211 0 005666777777663 11
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccc------hh-------hHhhcccc----
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRSN---- 333 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~------~~-------~li~g~~~---- 333 (687)
+. .+.|.+.|-- ....-+.+.+++++|..++..+..+ .||.+-|. .+ .+-..|..
T Consensus 212 e~-~i~Dkla~~e-----~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 212 EK-QIVDKLAFEE-----TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hh-HHHHHHHHhh-----hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 11 1112222100 0011266778889999998888877 48887776 10 00011110
Q ss_pred ----------------------ccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHH----HHHHHHHHHHhCCC----
Q 005628 334 ----------------------LERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ----RGFEIYEKMCLDEV---- 383 (687)
Q Consensus 334 ----------------------~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~----~A~~lf~~M~~~gi---- 383 (687)
.-..++..+.++|+.+-... +.+-|-.-...+ -+..+...|...|.
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d----l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD----LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh----hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 00113445556666543222 222222111111 12222222222211
Q ss_pred ------CCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 384 ------PMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 384 ------~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
+|....|+ -++..|-+.|+++.|...++.-..+ .|+.+ -|-.=-..++.+|++++|...+++..+-. .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 45655444 4667788899999999999976543 45543 34333467888999999999999987653 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005628 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (687)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (687)
||...-.--..-..++.+.++|.++.......+.+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 45554445555567889999999999999888433
No 164
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.23 E-value=8.1 Score=39.08 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=96.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+--.|+-+.+..+...... ...-|....+.++....+.|++.+|...|.+.... -.+|...|+.+=-+|-+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 344445555555555444332 12345556677999999999999999999997654 5689999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
+|..-|....+--. -+...+|-|--.|.-.|+.+.|..++..-... +..++
T Consensus 152 ~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~ 202 (257)
T COG5010 152 EARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADS 202 (257)
T ss_pred HHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCch
Confidence 99999988877422 23455666777778889999999999998887 55444
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.13 E-value=1.2 Score=34.59 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=38.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
..+.+.|++++|.++|++..+.. +-+...+..+-..+...|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777778888887777765 225566777777777777777777777776543
No 166
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.11 E-value=8.2 Score=35.22 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=84.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+|..+-..+.......+++.+...+. .+...+|.+|..|++.. ..+..+.+.. .++.+...-++..|-+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 78888888899999999999998874 78889999999999874 3444455542 2455666678888989999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCChhHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~g~~p~t~~~I~ 499 (687)
.+++..++..+.. |...++.+... ++++.|.+++.+ .-.|+.|..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~ 132 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVL 132 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHH
Confidence 9899888887632 22333334444 778888887765 12455665533
No 167
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.67 E-value=11 Score=39.45 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhh----ccHHHHHHH
Q 005628 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK----YAFQRGFEI 374 (687)
Q Consensus 299 ~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~----g~~~~A~~l 374 (687)
.+++...+++.|.+.|+.-+..+|- .++ +|...+.. -...+|.++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~l-----aA~--------------------------~i~~~~~~~~~~~~~~ra~~i 125 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYL-----AAL--------------------------IILEEEEKEDYDEIIQRAKEI 125 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHH-----HHH--------------------------HHHHhcccccHHHHHHHHHHH
Confidence 3567788889999999888887664 111 11111111 246789999
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCC---hHHHHH
Q 005628 375 YEKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGD---VDKACS 443 (687)
Q Consensus 375 f~~M~~~gi---~pd~~tyn~LI~~~~~~g~~----~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~---~~~A~~ 443 (687)
|+.|++... .++-.++.+|+.. ...++ +.+..+++.+...|+..+-. -+-+-|-+++..-. +..+.+
T Consensus 126 y~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~ 203 (297)
T PF13170_consen 126 YKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIE 203 (297)
T ss_pred HHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHH
Confidence 999998753 3677888888766 33443 46778888888888765432 34444444444322 446889
Q ss_pred HHHHHHHCCCCCCHHHHHHH
Q 005628 444 VEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~L 463 (687)
+++.+.+.|+++....|..+
T Consensus 204 l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 204 LYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHcCCccccccccHH
Confidence 99999999999888877644
No 168
>PLN02789 farnesyltranstransferase
Probab=89.53 E-value=32 Score=36.58 Aligned_cols=215 Identities=11% Similarity=0.007 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC-chhhhhhhhhhccccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~ 270 (687)
++..+-..+...++.++|+.++++++.. .|+.+ .|+.-=..+. +.| .++++++.++ ++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i 99 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVA 99 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHH
Confidence 3344444456677889999999998864 34443 2332222333 333 4567777764 222
Q ss_pred ccCCCCCccchhccccccccccccccCCC--hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~--~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
.. .-++-..|+..--. +.+.|. .+++..+++.|.+.. ..
T Consensus 100 ~~-npknyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----pk---------------------------- 140 (320)
T PLN02789 100 ED-NPKNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----AK---------------------------- 140 (320)
T ss_pred HH-CCcchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----cc----------------------------
Confidence 21 12233345532222 222232 255677776666542 11
Q ss_pred CChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHcCCCCC
Q 005628 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPR 421 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~---g~~----~~A~~l~~~M~~~g~~Pd 421 (687)
|...|+. .--.+.+.|+++++++.++++.+..+. |...|+-.--.+.+. |.. +++++....+... .+-|
T Consensus 141 -Ny~AW~~-R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N 216 (320)
T PLN02789 141 -NYHAWSH-RQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRN 216 (320)
T ss_pred -cHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCC
Confidence 2223444 444555667899999999999987643 556676665555554 222 4566666555544 2246
Q ss_pred cchHHHHHHHHHhC----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 422 LRSYGPALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 422 ~~ty~~lI~~~~~~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
...|+-+-..+... +...+|.+++.+....+ ..+......|++.|+..
T Consensus 217 ~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 217 ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 67788888777773 34466888888876643 33667788899999864
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.15 E-value=3 Score=48.31 Aligned_cols=224 Identities=12% Similarity=-0.008 Sum_probs=118.6
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CCHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LGQYHYN 230 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~-~Gi~--------pd~~tyn 230 (687)
+...|+++.|++-...+ +.. ..|..|-..|.+-.+++-|.-.+..|.. +|.+ |+...
T Consensus 738 yvtiG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e-- 803 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE-- 803 (1416)
T ss_pred EEEeccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh--
Confidence 34567888888888777 233 8999999999999999999888888863 2321 22110
Q ss_pred HHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
.=...++- ..|.+++|..++. +-.+ |..|-+- |-..|.+++|.++-+.-
T Consensus 804 akvAvLAi---------eLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 804 AKVAVLAI---------ELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETK 852 (1416)
T ss_pred hHHHHHHH---------HHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhc
Confidence 00111110 3455666666663 1111 1222222 44455555555554332
Q ss_pred HhcCCCCCccccchhhHhhccc-------------cccCCCcch----------hcccCCCCChhhhHHHHHHHHHhhcc
Q 005628 311 ENLGQFSNGHMKLNSQLLDGRS-------------NLERGPDDQ----------SRKKDWSIDNQDADEIRLSEDAKKYA 367 (687)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~-------------~~a~~~~~~----------m~~~g~~pd~~tyn~~lI~~~~k~g~ 367 (687)
.+-.++-.-.-|. .-+++.. ..|..++.. -+.+.-.|....|.. ..+-..|+
T Consensus 853 DRiHLr~Tyy~yA--~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWg---qYlES~Ge 927 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYA--KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWG---QYLESVGE 927 (1416)
T ss_pred cceehhhhHHHHH--HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHH---HHHhcccc
Confidence 2222221111111 1111111 001111111 111222334444444 23335688
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
++.|+.+|...++ |-++++..|-.|+.++|-++-++-. |....-.|-..|-..|++.+|..+|-.
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888887654 5667777777888888877776532 333444556667777777777776655
Q ss_pred H
Q 005628 448 M 448 (687)
Q Consensus 448 M 448 (687)
.
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 3
No 170
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=37 Score=36.77 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=130.4
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 195 RVELDMCS--KRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 195 n~lI~~~~--k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..-|.+++ -.++-..|..++-.+... -++-|++....+-+.+. ..|+.++|...|.. ..|.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~d 262 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCAN 262 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCC
Confidence 33344443 345666666666666543 46667888888888888 88999999999951 12222
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc----cccCCCcchhcccCC
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS----NLERGPDDQSRKKDW 347 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~----~~a~~~~~~m~~~g~ 347 (687)
-..+...-.|..| +.+.|++++...+...+.... -.|-. ...++++- +.++..+ ....+.+
T Consensus 263 py~i~~MD~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~----~~ta~-~wfV~~~~l~~~K~~~rAL-~~~eK~I 327 (564)
T KOG1174|consen 263 PDNVEAMDLYAVL---------LGQEGGCEQDSALMDYLFAKV----KYTAS-HWFVHAQLLYDEKKFERAL-NFVEKCI 327 (564)
T ss_pred hhhhhhHHHHHHH---------HHhccCHhhHHHHHHHHHhhh----hcchh-hhhhhhhhhhhhhhHHHHH-HHHHHHh
Confidence 2111111115555 456677777666666554321 00000 01111111 1111000 0011112
Q ss_pred CCChhhhHHHHH--HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 348 SIDNQDADEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 348 ~pd~~tyn~~lI--~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
..|.-..-..|+ ..+...++.++|.=-|+..+.-. +-+..+|--|+..|-..|++.||.-+-++-.+. +.-+..+.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 222222223233 34556678888888887765431 236678888888888888888887665543322 11222332
Q ss_pred HHH-HHHHH-hCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 GPA-LSVFC-NNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~l-I~~~~-~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+ -..|. .-.--++|.++++.-.. +.|+- ...+.+-.-+...|..+++..+++.-...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 222 01111 11123555555554433 33442 23344555556677777777777766555
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.77 E-value=1.4 Score=35.68 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCCC-cchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g-~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+|+.+-..|...|++++|+..|++.... | -.|+ ..+|+.+-..|...|+.++|.+.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555555555544322 1 0122 334444555555555555555555443
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=87.68 E-value=3.9 Score=32.39 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666665542 113444444555556666666666666666555
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.63 E-value=9.8 Score=34.12 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=65.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSV 468 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~ 468 (687)
.++-..|+.++|..+|++-...|+... ...+-.+-+.+-..|+.++|..++++..... |+ ......+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 456678999999999999999887654 3455566678888999999999999887652 43 112222334667
Q ss_pred hcCChHHHHHHHHHHHh
Q 005628 469 EAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~ 485 (687)
..|+.++|...+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999987765443
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.32 E-value=62 Score=38.45 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=139.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccch
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ty 281 (687)
...+++..|++..+.+.+. -||. .|..++.|+... +.|+.++|..+++ ..... +..|..|-
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~--------r~gk~~ea~~~Le-------~~~~~-~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLF--------RLGKGDEALKLLE-------ALYGL-KGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHH--------HhcCchhHHHHHh-------hhccC-CCCchHHH
Confidence 4567899999999888754 2443 467777777743 6788999998874 22211 23388888
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHH
Q 005628 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (687)
Q Consensus 282 n~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (687)
.++-.. |...++.++|..+++..... -|+.. ++- . +-.+
T Consensus 81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~ee------ll~--------------------------~-lFma 119 (932)
T KOG2053|consen 81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPSEE------LLY--------------------------H-LFMA 119 (932)
T ss_pred HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCcHH------HHH--------------------------H-HHHH
Confidence 888888 99999999999999877654 24311 111 1 3345
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcC-CCCCcchHHHHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLG-INPRLRSYGPALS 430 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~----------~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~ 430 (687)
|.+.+.+.+-.+.=-+|-+ ..+-+...|=++|+.+...-. +.-|.+.++.+.+.+ -.-...-.-.-+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 5565555433332222222 233344555555555544321 224666666666553 1111111122223
Q ss_pred HHHhCCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 005628 431 VFCNNGDVDKACSVE-EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~-~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (687)
.+-..|+.++|++++ ....+.-..-+...-+--++.+...+++.+..++-.++..+ +.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--GNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh--CCcc
Confidence 344568889999988 44444444556666677788888899999999988888888 5443
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=38 Score=34.42 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=94.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~ 434 (687)
+.=+....|+.+.|...++++..+- |.. .-+.++. +-..|.+++|.++++.+.+.. +-|.++|--=|...-.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344456788899999999988763 332 2222221 334689999999999998875 5577888776666767
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+--+|.+-+.+-.+. +.-|...|.-|-..|...|++++|.-.+++|.-.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 78877888777776665 6779999999999999999999999999999877
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.88 E-value=9.5 Score=39.28 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSY 425 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty 425 (687)
..|.. .+..+.+.|++++|...|+.+...-..-. ...+-.+-..|...|++++|...|+.+...- |+ ...+
T Consensus 144 ~~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl 220 (263)
T PRK10803 144 TDYNA-AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAM 220 (263)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHH
Confidence 34555 55555677999999999999997642211 2466778888999999999999999998651 33 2223
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
--+...+...|+.++|.++|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445667899999999999988765
No 177
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.84 E-value=13 Score=38.98 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC---Cccchhc
Q 005628 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (687)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~---d~~tyn~ 283 (687)
+.+.+.+++.|++.|++-+.++|-+..-...... .....-.+.+|..++ ++|+++..+- +.+.+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 4566789999999999999888877544444200 000112345666666 3666654433 5556666
Q ss_pred cccc
Q 005628 284 GSSP 287 (687)
Q Consensus 284 Li~~ 287 (687)
|+..
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 6555
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.68 E-value=24 Score=35.83 Aligned_cols=88 Identities=8% Similarity=-0.079 Sum_probs=57.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~ 435 (687)
+|.-|=......+|...+..++.. .-..-+ .+.+-|-+.|.+..|..=|+.+.+. +........-.++.+|-+.
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 566665555666666555554431 001111 4555688899999999999998875 3333334556788999999
Q ss_pred CChHHHHHHHHHHH
Q 005628 436 GDVDKACSVEEHML 449 (687)
Q Consensus 436 g~~~~A~~l~~~M~ 449 (687)
|..++|..+..-+.
T Consensus 226 g~~~~a~~~~~~l~ 239 (243)
T PRK10866 226 QLNAQADKVAKIIA 239 (243)
T ss_pred CChHHHHHHHHHHh
Confidence 99999988776553
No 179
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.40 E-value=47 Score=38.03 Aligned_cols=287 Identities=11% Similarity=0.006 Sum_probs=138.5
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH--HHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--KLGQ--YHYNVLLY 234 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi--~pd~--~tyn~Ll~ 234 (687)
-+++.++.++|-+.+.....+..--....+.+-..|.-+-+-.+++-+.-..+.+=. ..+.|+ -+|. +.|++|-+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda-iiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA-IIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH-HHHhhcccCcHHHHHHHHHHHH
Confidence 455788888888888877543222222223344677777777777665554444322 223333 3554 46788888
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccc---hhccccccccccccccCCChhhHHHHHHHHH
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ---LDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~t---yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (687)
-|. +.|.+++|.+++. |-+. .+.| |+.+-++ |.+-..-.-+. .|.
T Consensus 257 YYI----------r~g~~ekarDvye-------eai~-----~v~tvrDFt~ifd~------Ya~FEE~~~~~----~me 304 (835)
T KOG2047|consen 257 YYI----------RSGLFEKARDVYE-------EAIQ-----TVMTVRDFTQIFDA------YAQFEESCVAA----KME 304 (835)
T ss_pred HHH----------HhhhhHHHHHHHH-------HHHH-----hheehhhHHHHHHH------HHHHHHHHHHH----HHh
Confidence 888 7888888888885 2222 1122 3333333 22110000000 010
Q ss_pred ----hcCCCCCccccc-----hhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC
Q 005628 312 ----NLGQFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (687)
Q Consensus 312 ----~~g~~Pd~~ty~-----~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (687)
+.|-.-|.+... ...|++..- .+.+...-+.-..++.+|-. -+ -+..|+..+-...|.+....
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~----~~lNsVlLRQn~~nV~eW~k-RV--~l~e~~~~~~i~tyteAv~~- 376 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRP----LLLNSVLLRQNPHNVEEWHK-RV--KLYEGNAAEQINTYTEAVKT- 376 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccc----hHHHHHHHhcCCccHHHHHh-hh--hhhcCChHHHHHHHHHHHHc-
Confidence 000000111110 001111110 01111111111223334433 22 23345566666666666543
Q ss_pred CCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHC--
Q 005628 383 VPM------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH-- 451 (687)
Q Consensus 383 i~p------d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-- 451 (687)
+.| -...|..+-+.|-.+|+++.|..+|+.-.+...+-- ..+|..--..=.++.+++.|+++.+.....
T Consensus 377 vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 377 VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 111 124577777777788888888888887655432110 122332233333455666677766654321
Q ss_pred --------CCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 452 --------GVYP-------EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 452 --------gv~p-------d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|-.| +...|...++.--..|-++....+++++.+.
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2334555555555667777777777777765
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=85.94 E-value=11 Score=35.48 Aligned_cols=87 Identities=8% Similarity=-0.099 Sum_probs=37.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (687)
+...|++++|..+|+-.... .|....|--=+.+ +-..|++++|...|.....-.. -|...|-.+=.++.+.|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 34445555555555444432 2333222222222 2223555555555554444332 233444444444455555555
Q ss_pred HHHHHHHHHhc
Q 005628 476 VYYLLHKLRTS 486 (687)
Q Consensus 476 A~~ll~~M~~~ 486 (687)
|.+-|+.-...
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 181
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.88 E-value=16 Score=43.96 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=81.8
Q ss_pred CCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHH---------------
Q 005628 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDM--------------- 409 (687)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l--------------- 409 (687)
.|+....-..||..|-..+++++|.++.++-.+. .|+. .-|..+ .+.+.++.++|..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 3444443344889998999999999998865543 2333 223333 44555555555444
Q ss_pred ---HHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 410 ---VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 410 ---~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|...+ -+...+-.|-.+|-+.|+.++|..+|+++.+.. .-|....|-+-..|+.. ++++|..++.+-...
T Consensus 103 e~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11111111 122455666777778899999999999988876 44667777777777777 777777776655443
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.78 E-value=22 Score=40.41 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhh
Q 005628 192 FQLRVELDMCSKRGDVM--GAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~--~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~ 260 (687)
.-+++.=++|.|..+.. +-+.=+++|++.|-.|+.......+ +| .|.+.+|.++|.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~-Ay------------~gKF~EAAklFk 656 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVF-AY------------QGKFHEAAKLFK 656 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHH-Hh------------hhhHHHHHHHHH
Confidence 35566667777766543 4445567788889989887655443 33 366777777774
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.74 E-value=12 Score=41.17 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=48.8
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
+...|++ +-..|.+.|++++|...|++-.+. .||. .+|..+-.+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666 777888888888888888886664 3553 45888888888888888888888887764
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.92 E-value=4.1 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~ 414 (687)
|..+-..+...|++++|+..|++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.85 E-value=11 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+.+...|+.+-.+|.+.|++++|+..|+.-.+. .|+.. +|..+-.+|...|+.++|.+.++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999986654 57754 5899999999999999999999998875
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=84.11 E-value=19 Score=37.47 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=74.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--cchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd--~~ty~~lI~ 430 (687)
.+..|...|++..|-+++.++ -..|-.. |++++|.+.|++-... | .+. ..++.-+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 556666666666665555544 3455555 7888888888765432 3 111 245667778
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCC-----CCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVY-----PEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~-----pd~~t-y~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.+.+.|++++|.++|++....-.. .+... |-..+-++...|+...|...|++......+...+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 899999999999999998765332 22322 2233335566799999999999998774343333
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=83.69 E-value=18 Score=33.98 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=71.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~-~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (687)
.-+...|++++|..+|+-+..-. |.. .-|-.|=-++-..|++++|++.+........ -|...|-.+=.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 45678999999999999998743 443 4455565566668999999999999887653 4677888888899999999
Q ss_pred HHHHHHHHHHHHC
Q 005628 439 DKACSVEEHMLEH 451 (687)
Q Consensus 439 ~~A~~l~~~M~~~ 451 (687)
+.|.+-|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976554
No 188
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.33 E-value=2.8 Score=33.90 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv-~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
.+|+.+-..|...|++++|...|++..+. |- .|+ ..+|+.|-..|...|++++|++++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46888889999999999999999987654 21 133 5678888899999999999999998754
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=83.28 E-value=25 Score=41.59 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=89.9
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
...+++..|+....++.++. ||. .|..++.++ .+.|+.++|..+++.....+.. |..|-..+-..|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 46678899999998887753 442 355556654 4689999999999988766554 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
|..+|++... ..|+..-...+..+|.+.+.+.+-.+.=-+|
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 4588888888999999988877544333333
No 190
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.48 E-value=11 Score=39.25 Aligned_cols=103 Identities=10% Similarity=0.041 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 382 gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
|......+...++..-....+++.+...+-.++.. -..|+...|. +.-+|-.-+.+++..+...=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~--~irlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT--WIRLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH--HHHHHHccChHHHHHHHhCcchhccccchh
Confidence 44455555666666555566677777666665533 1334443332 222333445666666666666677777777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++.||+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777766666554
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=82.17 E-value=69 Score=36.48 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 369 QRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 369 ~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
..+.+...+.... ....+...|.++--.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 233455778887666667899999999999988765 7888999999999999999999999988
Q ss_pred HHHCCCCCCHHHH
Q 005628 448 MLEHGVYPEEPEL 460 (687)
Q Consensus 448 M~~~gv~pd~~ty 460 (687)
... +.|...||
T Consensus 479 A~~--L~P~~pt~ 489 (517)
T PRK10153 479 AFN--LRPGENTL 489 (517)
T ss_pred HHh--cCCCCchH
Confidence 765 44555554
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.09 E-value=45 Score=35.40 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
.+.+..|.-+...|+...|.++.++. .+ ||..-|-.-|.+|+..+++++-.++... + -.++-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 45666677788899999888887654 44 8999999999999999999887765432 1 2348899999999
Q ss_pred HhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcCHHHHHhh
Q 005628 468 VEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a~ 511 (687)
.+.|...+|..++.++.. -.-+.-|.+.+...+|.
T Consensus 248 ~~~~~~~eA~~yI~k~~~---------~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD---------EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHCCCHHHHHHHHHhCCh---------HHHHHHHHHCCCHHHHH
Confidence 999999999998877222 13355666666654444
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.93 E-value=5.7 Score=31.42 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|.+.+++++|.++++.+...+ +.+...|...=..+.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555441 11333344444445555555555555555544
No 194
>PLN02789 farnesyltranstransferase
Probab=81.57 E-value=59 Score=34.52 Aligned_cols=130 Identities=9% Similarity=-0.018 Sum_probs=93.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-~tyn~LI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
+-..+...++.++|+.++++.... .|+- .+|+.--..+.+.| ++++++..++.+....- -+..+|+.---.+-+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 445667778899999999998874 3433 34555545555666 67999999999887632 2334566444344455
Q ss_pred CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 436 GD--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 436 g~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|+ .+++..+++.|.+..- -|...|+..--.+.+.|+++++++.++++.+. .+...
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 65 3678888988887653 37788888888888899999999999999987 44444
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.64 E-value=27 Score=38.13 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhh
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~ 260 (687)
+.|...|+.--|..-++.|..+|-+..+.| +.++++.|++.|.-+| .|+..-|..+|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-----------~~d~~ta~~ife 456 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-----------TGDRATAYNIFE 456 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-----------cCCcchHHHHHH
Confidence 788888888888888999999999999888 5689999999998888 355556666663
No 196
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=7.2 Score=40.50 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=69.6
Q ss_pred CccchhccccccccccccccCCChhhHHHHHHHHHhcC---CCCCccccchhhHhhccccccCCCcchhcccCCCCChhh
Q 005628 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (687)
Q Consensus 277 d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t 353 (687)
.+++-..++.. -.+..+++++..++-.+...- ..|+...|
T Consensus 63 s~~~Vd~~V~v------~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~------------------------------- 105 (418)
T KOG4570|consen 63 SSLTVDRLVDV------ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH------------------------------- 105 (418)
T ss_pred ceeehhhhhhc------cccccchhHHHHHHHHHhcCcchhhhccccHH-------------------------------
Confidence 44555666666 666778888887776665431 22222222
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
.+--++-.-+.++++.++..=...|+-||-+|++.||+.+.+.+++.+|..+.-.|...
T Consensus 106 ----~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 ----TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ----HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22334445577888888888888999999999999999999999999988887777654
No 197
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.79 E-value=41 Score=31.19 Aligned_cols=103 Identities=8% Similarity=0.051 Sum_probs=77.8
Q ss_pred HHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---C--CCCcchHHHHHHHHHhCCC-hHHHHHHH
Q 005628 374 IYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG---I--NPRLRSYGPALSVFCNNGD-VDKACSVE 445 (687)
Q Consensus 374 lf~~M~~~gi~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g---~--~Pd~~ty~~lI~~~~~~g~-~~~A~~l~ 445 (687)
....|++.+..++. ...|+++.-.+..+...-...+++.+.... + .-|-.+|.+++.+..+..- --.+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 33445666676665 457899998898899998888888875321 1 2466789999999977766 45578899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
+-|.+.+.+++..-|..||.++.+.-..+..
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 9999989999999999999997776444444
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.45 E-value=7.9 Score=30.23 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhc
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTS 486 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-~~~~A~~ll~~M~~~ 486 (687)
..+|..+=..+...|++++|...|++..+.. .-+...|..+-.+|.+.| ++++|+..+++-...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567777788999999999999999998864 225677888888889999 799999998876653
No 199
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.13 E-value=50 Score=31.48 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 372 ~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+....+.+.+++|+...|..+|+.+.+.|++.. +..+...++-||...-...+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 5667777788999999999999999999998654 4455567888888777766644433 223344444444332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
=...+..+++.+...|++-+|.++.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0124677888889999999999988775
No 200
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.68 E-value=1.5e+02 Score=35.22 Aligned_cols=71 Identities=6% Similarity=-0.082 Sum_probs=45.5
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhH
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (687)
..|.++.|+.++. .- --|-+++.- .|-.|+.++|.++-++-..+ ...|.
T Consensus 924 S~GemdaAl~~Y~-------~A---------~D~fs~VrI------~C~qGk~~kAa~iA~esgd~-----AAcYh---- 972 (1416)
T KOG3617|consen 924 SVGEMDAALSFYS-------SA---------KDYFSMVRI------KCIQGKTDKAARIAEESGDK-----AACYH---- 972 (1416)
T ss_pred cccchHHHHHHHH-------Hh---------hhhhhheee------EeeccCchHHHHHHHhcccH-----HHHHH----
Confidence 5677777777774 11 125666666 88889999888876654322 11221
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (687)
|-..|-..|++.+|..+|-+.+
T Consensus 973 ------------------------------laR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 973 ------------------------------LARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------------------------------HHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777777777777777654
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.68 E-value=1e+02 Score=33.34 Aligned_cols=249 Identities=15% Similarity=0.090 Sum_probs=144.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc-
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS-SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG- 279 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~-~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~- 279 (687)
--.|+.+.|.+-|+.|.. |+.|--.=|.++. .+. +.|..+.|...-. +- .+..+..
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAq-------r~GareaAr~yAe-------~A---a~~Ap~l~ 188 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQ-------RLGAREAARHYAE-------RA---AEKAPQLP 188 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHH-------hcccHHHHHHHHH-------HH---HhhccCCc
Confidence 346999999999999985 3333333333332 222 4555555544432 10 0222222
Q ss_pred -chhccccccccccccccCCChhhHHHHHHHHHhcC-CCCCccccchhhHhhccc------cccCCCcchhcccCCCCCh
Q 005628 280 -QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRS------NLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 280 -tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-~~Pd~~ty~~~~li~g~~------~~a~~~~~~m~~~g~~pd~ 351 (687)
.+.+++.. .|..|+++.|+++.+.-+... +.||+.--....|+.+-. +.+.-.-.-.....+.||.
T Consensus 189 WA~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl 262 (531)
T COG3898 189 WAARATLEA------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL 262 (531)
T ss_pred hHHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Confidence 35667777 999999999999999876643 556665443223333332 1111111222233455665
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCc-chHHHHH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYGPAL 429 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~-~ty~~lI 429 (687)
+--..+--..+.+.|++.++-.|++.+-+....|++. ++..+.+.|+ .+.+=++..+.. .++||. .+--.+.
T Consensus 263 vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va 336 (531)
T COG3898 263 VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVA 336 (531)
T ss_pred chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5443333467888999999999999998877666643 2223344554 333333333322 244543 4555566
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE-AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~-~g~~~~A~~ll~~M~~~ 486 (687)
.+....|++..|..--+.... ..|....|-.|-+.--- .|+-.++...+-+-...
T Consensus 337 ~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 337 EAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 677778888777654444332 46777777777665543 48888887777766555
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.77 E-value=1e+02 Score=33.98 Aligned_cols=173 Identities=8% Similarity=0.025 Sum_probs=106.2
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+-+.+++.+|.++|....++. .-+...+. ...+...+|++|... +++....
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lk---------------------------eEvl~grilnAffl~-nld~Me~ 66 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLK---------------------------EEVLGGRILNAFFLN-NLDLMEK 66 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHH---------------------------HHHHhhHHHHHHHHh-hHHHHHH
Confidence 456788999999998876542 11111111 112223377887654 4455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHc--CCC------------CCcchHHHHHHHHHhCCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSL--GIN------------PRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~--g~~------------Pd~~ty~~lI~~~~~~g~ 437 (687)
.+.+..+.- | ...|-.|..++ -+.+++++|.+.+..-.+. +-+ +|..-=+..++++...|+
T Consensus 67 ~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 67 QLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR 143 (549)
T ss_pred HHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC
Confidence 666665531 2 23355555543 4578899999888776654 322 233334778889999999
Q ss_pred hHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCChhHHHHHHHHHcCHH
Q 005628 438 VDKACSVEEHMLEH----GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS-VRKVSPSTADVIAKWFNSKE 506 (687)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~-~~g~~p~t~~~I~~~~~~~~ 506 (687)
+.++..+++.|..+ ...-+..+|+.++-.+.+. +|-++++. ...+-|+-|.+|..|.+.-.
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~ 209 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIH 209 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 99999999888765 4447899999977777654 33344222 12466667777666655444
No 203
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.65 E-value=21 Score=37.02 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---ccCCCChh--HHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT---SVRKVSPS--TADVI 498 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~---~~~g~~p~--t~~~I 498 (687)
++..++..+...|+++.+.+.++++.... .-|...|..||.+|.+.|+...|+..++.+.. ...|+.|. +....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45666666777777777777777776653 33667777777777777777777777776654 22355554 44443
Q ss_pred HHHHc
Q 005628 499 AKWFN 503 (687)
Q Consensus 499 ~~~~~ 503 (687)
....+
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 33333
No 204
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.54 E-value=24 Score=32.09 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (687)
...+|..+...+.......+++.+...+. .+...+|.+|..|++... .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888899999999999988874 677899999999998753 344444442 1344455567888888
Q ss_pred cCChHHHHHHHHHHHhc
Q 005628 470 AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (687)
.+.++++..++.++...
T Consensus 82 ~~l~~~~~~l~~k~~~~ 98 (140)
T smart00299 82 AKLYEEAVELYKKDGNF 98 (140)
T ss_pred cCcHHHHHHHHHhhcCH
Confidence 88888888888776543
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=75.53 E-value=24 Score=32.63 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=21.6
Q ss_pred hhccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi--~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (687)
+.|++++|.+.|+.+..+-. +-..-.-=-|+.+|.+.+++++|...++...+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444555555544444311 01112233344444444444444444444443
No 206
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.43 E-value=52 Score=31.03 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=8.4
Q ss_pred hCCChHHHHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLE 450 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (687)
..|++.+|..+|+++.+
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 44555555555555443
No 207
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.03 E-value=55 Score=33.95 Aligned_cols=139 Identities=9% Similarity=0.169 Sum_probs=98.8
Q ss_pred hccHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH-cC-ChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhCCChHH
Q 005628 365 KYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMS-MG-DGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~-~gi~pd~~tyn~LI~~~~~-~g-~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
+..+.+|+++|+...- ..+.-|..+...|++.... .+ ....-.++.+.+... |-.++.-+-.++|..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3356678888884433 3466777777778777766 22 344445666666643 566888888999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhccCCCChhHHHHHHHHHc
Q 005628 441 ACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK-----LRTSVRKVSPSTADVIAKWFN 503 (687)
Q Consensus 441 A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~-----M~~~~~g~~p~t~~~I~~~~~ 503 (687)
-+++++.-... +..-|...|..+|+.....|+..-...+.++ +++.+..++|+....|..+|+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99999887665 5667889999999999999998766665553 334433455556666776665
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.86 E-value=68 Score=29.35 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=69.1
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC----------------CCCcchHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GI----------------NPRLRSYGP 427 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~----------------~Pd~~ty~~ 427 (687)
.|.++++.++..+.... -+..-||.+|--....-+-+-.+++++.+-+. .+ .-+..-...
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 35567778888877654 24555666655444444444444444443211 00 012233456
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (687)
.++.+.+.|.-+.-.++..++.+ .-.++....-.+-.+|.+.|...++-+++.+--++ |+..
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek--G~kE 153 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK--GLKE 153 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--T-HH
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh--chHH
Confidence 66777777777777777777765 34677778888888999999999999998888777 5443
No 209
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.46 E-value=39 Score=32.46 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCC----HH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPE----EP 458 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---gv~pd----~~ 458 (687)
..+..+.+-|++.|+.++|++.+.++......| -+..+-.+|....-.+++..+.......... |-.++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356666677777777777777777766653322 2234455666666667776666655544332 21111 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|..|.. ...+++.+|-++|-+....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2222221 3467888888777766544
No 210
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.28 E-value=40 Score=34.96 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=63.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDR 475 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~ 475 (687)
+.+.+++.+|+..|.+-.+. ..-|.+-|..=-.+|++.|..+.|++=.+..+. +.|. ..+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45677888888888776654 223556666677788888888888766655543 2232 3567777788888888888
Q ss_pred HHHHHHHHHhccCCCChhHHHH
Q 005628 476 VYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 476 A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
|.+.|++-.+- .+.-.+|..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 88887765554 333336654
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=72.20 E-value=59 Score=36.52 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=79.8
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcC--C-CCCcchHHHHHHHHHhCCChHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLG--I-NPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~-~~~~~g~~~~A~~l~~~M~~~g--~-~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
....+.|.++++++..+ -|+...|...-. .+...|++++|.+.|+...... . +.....|--+.-.++-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 55789999999999975 477777755543 4555899999999999654311 0 1122333334445677899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHh
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-------~~A~~ll~~M~~ 485 (687)
|.+.|..+.+..- -...+|..+..+| ...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999987532 2345555555444 456666 888888887654
No 212
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=70.11 E-value=1e+02 Score=29.35 Aligned_cols=126 Identities=11% Similarity=0.139 Sum_probs=82.8
Q ss_pred ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCC
Q 005628 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPR 421 (687)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd 421 (687)
..++.|+...|.- +|+.+.+.|++. .+..+...++.+|.......+-.+.... -..-|++++.++..
T Consensus 22 ~~~i~~~~~L~~l-li~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~------ 90 (167)
T PF07035_consen 22 QHNIPVQHELYEL-LIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT------ 90 (167)
T ss_pred HcCCCCCHHHHHH-HHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh------
Confidence 4455555555556 999999999854 4566677788888877776664444321 13345555555543
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|..++..+...|++-+|.++....... +......++.+-.+.++...-..+|+-...+
T Consensus 91 --~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 --AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3778888999999999999988775221 2233356777777777776666666655553
No 213
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.06 E-value=2 Score=39.43 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=60.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+|+.+-+.+.++....+++.+...+..-+....|.|+..|++.++.++..++++. .+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 6677777888888888888888777667788889999999999888888887761 222444566777777777
Q ss_pred hHHHHHHHHHH
Q 005628 438 VDKACSVEEHM 448 (687)
Q Consensus 438 ~~~A~~l~~~M 448 (687)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 214
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.99 E-value=1e+02 Score=29.17 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=68.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
++..-.+.++.+++..+++-|.--... |...++-..| +...|+|++|..+|+++.... -..-|...+-++|-..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHH
Confidence 345556778999999999999863221 3344555544 467899999999999987763 3445667777777766
Q ss_pred ChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005628 437 DVDKACSVEEH-MLEHGVYPEEPELEALLRVSVEAGKG 473 (687)
Q Consensus 437 ~~~~A~~l~~~-M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (687)
.-+..|+.+-. +.+.+-.|+.. .|++.+....+.
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPDAR---ALVRALLARADL 125 (160)
T ss_pred cCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccc
Confidence 66666666543 55555444432 344444443333
No 215
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.79 E-value=54 Score=34.08 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=80.1
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~ 439 (687)
-..+.+++++|+..|.+..+-. +-|.+-|..=..+|++.|.++.|++=-+.-... .|. ..+|..|=-+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3567889999999999998753 347788888899999999999998776654443 343 368999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
+|.+.|+..++ +.|+-.+|-.=|+
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999988766 7898887765444
No 216
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=1.4e+02 Score=30.57 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=78.3
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l 444 (687)
.|..++|.++|+.+.+.. +.|.++|--=|-..-..|+--+|++-+.+..+. +.-|...|.-|-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 467788888888888766 556777766666666667777777777766654 667888888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHH-HHHHHHHHhcC---ChHHHHHHHHHHHhc
Q 005628 445 EEHMLEHGVYPEEPEL-EALLRVSVEAG---KGDRVYYLLHKLRTS 486 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty-~~Li~~~~~~g---~~~~A~~ll~~M~~~ 486 (687)
+++|.-. .|....| ..+-+.+--.| +.+-|.+++.+-.+.
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8888653 3444333 33333332222 334455555554443
No 217
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.74 E-value=45 Score=34.56 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELE 461 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~ 461 (687)
..+++.++..+...|+.+.+...++++.... +-|...|-.+|.+|.+.|+...|...|+.+.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3688899999999999999999999998763 35888999999999999999999999998755 58999888877
Q ss_pred HHHHH
Q 005628 462 ALLRV 466 (687)
Q Consensus 462 ~Li~~ 466 (687)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66655
No 218
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.63 E-value=52 Score=34.10 Aligned_cols=101 Identities=8% Similarity=0.083 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005628 369 QRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 369 ~~A~~lf~~M~~-~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
..-.++.+-+.. .|-.++..+..++|..++..+++.+-+++++..... +..-|.+-|..+|......|+..-...+.+
T Consensus 183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 334555555554 356788899999999999999999999999887665 566789999999999999999877777666
Q ss_pred H-----HHHCCCCCCHHHHHHHHHHHHh
Q 005628 447 H-----MLEHGVYPEEPELEALLRVSVE 469 (687)
Q Consensus 447 ~-----M~~~gv~pd~~ty~~Li~~~~~ 469 (687)
+ +.+.|+..+...-.+|-..+-+
T Consensus 263 ~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 263 DGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred CCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 4 3455677666666655554433
No 219
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.93 E-value=29 Score=30.07 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
+..+-++.+-...+.|+..+..+.+++|-+..++..|.++|+-++.. +.+....|..+|.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666778888888888888888888888888888887754 3334447776664
No 220
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.98 E-value=1.9e+02 Score=31.53 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=47.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH---HHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty---~~lI~~ 431 (687)
.+...+..|+.+-+.. +.+.|..++. .-++ .+...+..|+.+ +++.+.+.|..|+.... .+++..
T Consensus 138 pLh~A~~~~~~~~v~~----Ll~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~ 208 (413)
T PHA02875 138 PLHLAVMMGDIKGIEL----LIDHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCY 208 (413)
T ss_pred HHHHHHHcCCHHHHHH----HHhcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHH
Confidence 3444556676554333 3344544332 2223 334445566654 44555567777765432 356665
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
.+..|+.+ +.+.+.+.|..++..
T Consensus 209 A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 209 AIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHcCCHH----HHHHHHHCCcCcchH
Confidence 66777754 555666778777754
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=66.29 E-value=1.3e+02 Score=29.23 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=81.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---y~~lI~~~~~ 434 (687)
|-.+....|+..+|...|++-..-=..-|....-.+.++....+++.+|...++.+.+.. |+.++ --.+-..|.-
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHh
Confidence 667788888999999998887654445677777788888888889999988888877663 33322 2233456777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
.|....|..-|+...+. .|+...-...-..+.+.|+.+++..-+.++
T Consensus 173 ~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 173 QGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred cCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 78888888888887764 344333222333456777766655443333
No 222
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.03 E-value=24 Score=39.93 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=77.8
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
..+.|+++.|.++-.+.. ++.-|..|=++..+.|++..|.+.|..-. -|..|+-.+...|+.+.-
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHH
Confidence 347788888888877654 67789999999999999999999887543 367788888888888777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
..+-..-.+.|.. |.-.-+|...|++++..+++.+-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 7776776666642 45555677889999998887654
No 223
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.54 E-value=54 Score=35.87 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=66.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc---chHHHHHHHHH
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFC 433 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~ 433 (687)
+...+..|.. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++ +.|..++. .-+++|. ..+
T Consensus 106 L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~ 176 (413)
T PHA02875 106 LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLI-IAM 176 (413)
T ss_pred HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHH
Confidence 3444556664 45556666777665432 234566667788876544444 45654443 3344444 455
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPEL---EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty---~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
..|+.+ +.+.+.+.|..|+...- .+++...+..|+.+-+..+ .+. |..++
T Consensus 177 ~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L----l~~--gad~n 229 (413)
T PHA02875 177 AKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF----IKR--GADCN 229 (413)
T ss_pred HcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH----HHC--CcCcc
Confidence 667754 55666777887765432 3566655777877644444 445 65555
No 224
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.29 E-value=1.5 Score=40.27 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=60.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (687)
.+|+.|-+.+.+.....+++.+...+-.-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666677778888888888888766556677788888888888877777777762 12233456777777777
Q ss_pred ChHHHHHHHHHHHhc
Q 005628 472 KGDRVYYLLHKLRTS 486 (687)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (687)
.+++|..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 777777777765543
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=64.95 E-value=47 Score=36.51 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHc
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSM 400 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g----i~pd~~tyn~LI~~~~~~ 400 (687)
.+..+.++.+...|++.++..++++|..+= ..-|..+||-++-.++++
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 344557788889999999999998887643 447889999877777663
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=64.63 E-value=80 Score=29.20 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P---d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
..|+.-.. ..+.|++++|.+.|+.+... ... ....---|+.+|.+.++.++|...+++.++..-.--.+-|...+
T Consensus 12 ~ly~~a~~-~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 12 ELYQEAQE-ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33443333 34679999999999999876 211 22455678899999999999999999998765432335676677
Q ss_pred HHHHhcCC-----------------hHHHHHHHHHHHhc
Q 005628 465 RVSVEAGK-----------------GDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~-----------------~~~A~~ll~~M~~~ 486 (687)
.|++.-.. ..+|..-|+++...
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 77654332 55888888888887
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.62 E-value=15 Score=24.93 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQ 218 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~ 218 (687)
+|+.|=..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999954
No 228
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=63.53 E-value=37 Score=29.14 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
++.+-++.+....+.|+....++-+++|-+..++..|.++|+-.+.+ +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44555555566667777777777777777777777777777766633 2223445655553
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.19 E-value=13 Score=25.23 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKR 412 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~ 412 (687)
|+.|-+.|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=62.95 E-value=1.6e+02 Score=28.82 Aligned_cols=149 Identities=9% Similarity=-0.021 Sum_probs=78.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+-..|++++|...|+++...- |+.---. + ..-. +..++-+.|+++.|..
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~--------------------------~--A~l~-la~a~y~~~~y~~A~~ 63 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRY--PNSPYAP--------------------------Q--AQLM-LAYAYYKQGDYEEAIA 63 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHH--------------------------H--HHHH-HHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCChHHH--------------------------H--HHHH-HHHHHHHcCCHHHHHH
Confidence 456788899999998887652 2211110 0 0001 6678888889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------cchHHHHHHHHHhCCChHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-------LRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-------~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
.|+++...-..-...-+.-.+.|.+......... ....| ...|..+|.-|=......+|...+.
T Consensus 64 ~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 64 AYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence 8888776533222334444444444322211110 00011 1234555555555566666655554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++.+. .-... -.+-+.|.+.|.+..|..-++.+.++
T Consensus 135 ~l~~~---la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 135 ELRNR---LAEHE-LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHH---HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44321 00111 12556788899999999999999888
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.60 E-value=78 Score=36.29 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=54.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch-----------HHHHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-----------YGPALS 430 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-----------y~~lI~ 430 (687)
+-+...+.-|-++|..|-+ ...++......++|++|+.+-+...+ +.||++. |--.=.
T Consensus 757 lk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHH
Confidence 3344567788999998864 34678888999999999999887654 3566542 233345
Q ss_pred HHHhCCChHHHHHHHHHHHHC
Q 005628 431 VFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+|-++|+-.+|..+++.+...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 667777777777777766443
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=62.17 E-value=77 Score=30.44 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=65.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCc----chHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~----~ty~~l 428 (687)
+-+.|++.|+.++|.+.|.++.+....+. ...+-.+|+...-.+++..+...+.+.... |-.++. ..|..|
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 77899999999999999999998765554 346778888889999999988887776543 222222 233333
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 005628 429 LSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~ 449 (687)
. +...+++.+|-++|-+..
T Consensus 122 ~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 122 A--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred H--HHHhchHHHHHHHHHccC
Confidence 3 234678888888887654
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=62.06 E-value=1.2e+02 Score=33.92 Aligned_cols=59 Identities=17% Similarity=0.039 Sum_probs=40.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHG-VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~g-v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
-|-.++-+.|+.++|.+.|.+|.+.. ..-+......||.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34445556788888888888876532 222445667788888888888888888877643
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.16 E-value=1e+02 Score=31.64 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCC-HHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPE-EPELEA 462 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g----~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd-~~ty~~ 462 (687)
-|+.-++.+ +.|++.+|..-|....+.. ..||. +=-|-..+...|+.+.|-.+|..+.+. +-.|- ...+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466555443 5566777777777766542 22333 333667777777777777777777654 11122 234445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 005628 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 463 Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|-....+.|+.++|...|++....
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555667778888888888888877
No 235
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.03 E-value=1.5e+02 Score=27.69 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=46.3
Q ss_pred hhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
..++++++..+++.|.---. .|...+|-..| +...|+|++|..+|++..+.+ ....|...+.++|-.-.-|-.|
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~---~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA---GAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC---CCchHHHHHHHHHHHhcCChHH
Confidence 46677777777777765321 12334444444 356777888888888777663 2225666677777665555555
Q ss_pred HHH
Q 005628 443 SVE 445 (687)
Q Consensus 443 ~l~ 445 (687)
+.+
T Consensus 97 r~~ 99 (153)
T TIGR02561 97 HVH 99 (153)
T ss_pred HHH
Confidence 444
No 236
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=60.02 E-value=51 Score=28.31 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 405 ~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
++.+-++.+....+.|+...-.+.+.+|-|.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555555444
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.18 E-value=59 Score=36.21 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
.+. ++..+-+.|..+.|+++-.+-.. =.+...+.|+++.|.++.++. ++...|..|=+.+.
T Consensus 298 ~~~-i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 298 GQS-IARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHH-HHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 444 77888888888888876543321 123334455555555554322 23445555555555
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
+.|+++.|.+.|.... -|..|+--|.-.|+.+...++.+.
T Consensus 359 ~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence 5555555555555432 234444444445554444444433
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.85 E-value=2.2e+02 Score=29.67 Aligned_cols=130 Identities=10% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
......|++.+|..+|+......-. +...--.|+.+|...|+.+.|..++..+...--......-..-|.-+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3556788999999999988765322 245566788899999999999999998875422222222222334444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
+.-.+-...-. .| |...--.|-..|...|+.+.|.+.|-.+..+.++...+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 44444443332 35 55556677788889999999999888777775565555
No 239
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=1.6e+02 Score=30.60 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCcchHHHHHHHH---HhCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVF---CNNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~---~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
+-|...|-.|=..|...|+.+.|..-|..-.+. |=.|+. +..+-.++ ....+..++..+|+++.... .-|+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 347788999999999999999999988876654 433333 33333332 23344567888999987743 224455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|--.+...|++.+|...++.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555566778899999999999999988
No 240
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.00 E-value=74 Score=29.54 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=61.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDE---V--PMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g---i--~pd~~tyn~LI~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (687)
++.-....+.+.....+++.+..-. + ..|-.+|.+++.+.++..- ---+..+|..|++.+.+++..-|..||.+
T Consensus 45 iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 45 ILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666667777777777777774311 1 2456789999999987776 45688999999998899999999999999
Q ss_pred HHhCCC
Q 005628 432 FCNNGD 437 (687)
Q Consensus 432 ~~~~g~ 437 (687)
+.+...
T Consensus 125 ~l~g~~ 130 (145)
T PF13762_consen 125 ALRGYF 130 (145)
T ss_pred HHcCCC
Confidence 877533
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=57.98 E-value=3.1e+02 Score=33.99 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 005628 188 RSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQR 219 (687)
Q Consensus 188 ~P~~~tyn~lI~~~~k~g--~~~~A~~lf~~M~~ 219 (687)
.|+ .-.-.+|.+|.+.+ .+++|+....+.+.
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 45567888999988 78888888888775
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=55.77 E-value=28 Score=23.71 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~ 414 (687)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666544
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=55.64 E-value=1.3e+02 Score=28.63 Aligned_cols=87 Identities=11% Similarity=-0.053 Sum_probs=49.9
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
+-..|++++|..+|.-+...+.- |..=|..|-..+-..+++++|...|...-..+. -|.+.+=-+=.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34667777777777776654321 222344444444456777777777766554432 2333333344566667777777
Q ss_pred HHHHHHHHH
Q 005628 442 CSVEEHMLE 450 (687)
Q Consensus 442 ~~l~~~M~~ 450 (687)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766655
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=55.34 E-value=1.1e+02 Score=34.35 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCCC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g~ 437 (687)
...-+.|+.++|.+.|.+|.+.... -+....-.||.++-..+.+.++..++.+-.+... +.-..+|+..+-.+-..++
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 3445678999999999998764322 2345777889999999999999999887643322 1223567776654444443
No 245
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=55.23 E-value=35 Score=29.55 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+-++.+....+.|+..+..+.+++|.+..++.-|.++|+-++.+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444445555666666666666666666666666666655555
No 246
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.06 E-value=1.3e+02 Score=27.76 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCH
Q 005628 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (687)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~ 505 (687)
++.+.+.+.|++++.. =..+++.+...+..-.|.++++++.....++++. .|+++..+-..|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4556677788876643 2467778888887799999999999997777777 588887764433
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.03 E-value=1.3e+02 Score=33.55 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=44.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
+.|+++.|.++-++. .+...|..|-+...+.|+++.|.+.|.... -|..|+--|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHH
Confidence 444555554443322 244455555555555555555555554432 14445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
+-+....+|- +|....++.-.|+.++..++|.
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5544444442 2333334444455554444443
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.41 E-value=1.4e+02 Score=30.62 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCc-chHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYGPA 428 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~--pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~-~ty~~l 428 (687)
-|+. -++ +.+.|++.+|..-|....+.... -....+=.|-..+...|++++|-.+|..+.+. +-.|.. .++--|
T Consensus 144 ~Y~~-A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNA-ALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHH-HHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5777 444 44788899999999999986422 12334556888999999999999999998865 222322 344555
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
-....+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 56677889999999999998775
No 249
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=54.16 E-value=73 Score=31.19 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~--pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
.+...|++++|.+.|+++...... --....-.+..++-+.|++++|...++.....
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566666666666666654211 11223344555666666666666666665543
No 250
>PHA03100 ankyrin repeat protein; Provisional
Probab=53.96 E-value=1.2e+02 Score=33.87 Aligned_cols=216 Identities=11% Similarity=0.055 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH-----HHhcccCCcccCCCCchhhhhhhhhhcccccc
Q 005628 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHY--NVLLYL-----CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (687)
Q Consensus 195 n~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~ty--n~Ll~~-----~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~ 267 (687)
.+.+...++.|+.+- ++.+.+.|..|+.... .+.+.. .+ ..|..+-+.-+++
T Consensus 36 ~t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~----------~~~~~~iv~~Ll~------- 94 (480)
T PHA03100 36 VLPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYN----------LTDVKEIVKLLLE------- 94 (480)
T ss_pred chhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHH----------hhchHHHHHHHHH-------
Confidence 356666777888654 4455566877765322 234444 33 3444444444432
Q ss_pred cccccCCCC----Cccchhccccccccccccc-cCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcccc-c--cCCCc
Q 005628 268 ELGDSRDMD----NNGQLDYGSSPMIDKLESN-SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSN-L--ERGPD 339 (687)
Q Consensus 268 em~~~~g~~----d~~tyn~Li~~~~~~~~~~-~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~-~--a~~~~ 339 (687)
. |.. |...++.|.-+ .. ..|..+ +++.+.+.|..++.......+.++..+. . ...+.
T Consensus 95 ----~-ga~i~~~d~~g~tpL~~A------~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv 159 (480)
T PHA03100 95 ----Y-GANVNAPDNNGITPLLYA------ISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL 159 (480)
T ss_pred ----C-CCCCCCCCCCCCchhhHH------HhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH
Confidence 1 322 33334444443 21 445444 4445556776665544331122222221 1 23345
Q ss_pred chhcccCCCCChhhh--HHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHHcCChHHHHHH
Q 005628 340 DQSRKKDWSIDNQDA--DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA--------SLTAVGRMAMSMGDGDMAFDM 409 (687)
Q Consensus 340 ~~m~~~g~~pd~~ty--n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~--------tyn~LI~~~~~~g~~~~A~~l 409 (687)
..+...|..++.... .+ .+...+..|..+ +.+.+.+.|..|+.. .+.+.+...+..|+ ...++
T Consensus 160 ~~Ll~~g~din~~d~~g~t-pL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~i 232 (480)
T PHA03100 160 KLLIDKGVDINAKNRYGYT-PLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEV 232 (480)
T ss_pred HHHHHCCCCcccccCCCCC-HHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHH
Confidence 555566665543321 22 345555666543 344444455544422 11344445555555 11234
Q ss_pred HHHHHHcCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 410 VKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 410 ~~~M~~~g~~Pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
++.+.+.|..++. .-+++|. ..+..|+. ++++.+.+.|..|+..
T Consensus 233 v~~Ll~~g~din~~d~~g~TpL~-~A~~~~~~----~iv~~Ll~~gad~n~~ 279 (480)
T PHA03100 233 VNYLLSYGVPINIKDVYGFTPLH-YAVYNNNP----EFVKYLLDLGANPNLV 279 (480)
T ss_pred HHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHHcCCCCCcc
Confidence 4444555655443 2334443 34455553 3445555666655543
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=53.93 E-value=2.2e+02 Score=31.96 Aligned_cols=142 Identities=11% Similarity=-0.068 Sum_probs=95.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCcchHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD-EVPMN-----EASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSYGP 427 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd-----~~tyn~LI~~~~~~----g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (687)
|++..+=.|+-+.+++++.+-.+. ++.-. ..+|..++..++-. ...+.|.+++..+... -|+..-|.-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 667777788989999998876553 33322 24566666666654 5678899999999875 488887766
Q ss_pred HHHH-HHhCCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 005628 428 ALSV-FCNNGDVDKACSVEEHMLEHGV---YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (687)
Q Consensus 428 lI~~-~~~~g~~~~A~~l~~~M~~~gv---~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~ 502 (687)
.-.- +...|++++|.+.|+....... ......|--+.-.+.-..++++|...|.++.+.. .-++.+|.-+.+.|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 5543 3457999999999997653211 1122233334445677899999999999998751 22444665555544
No 252
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=2.2e+02 Score=29.66 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=78.9
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCcchHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGP 427 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g---~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (687)
...|-- |=..|...|+++.|..-|.+-.+-- .+|...+..+-.++.... .-.++..+|+++.... .-|+.+-.-
T Consensus 156 ~egW~~-Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 156 AEGWDL-LGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred chhHHH-HHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 334444 6688999999999999999887631 245556666666555533 3458999999998763 235566666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
|-..+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 7778999999999999999998853 444455555543
No 253
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.82 E-value=43 Score=24.60 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~ 235 (687)
+-..-+.|-+.++..++++|.+.|+..+...|..+|.-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33446789999999999999999999999999988864
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.28 E-value=88 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
-++...+.|+-|.-.+++.++.+. -.++....-.+-.+|.+.|+..+|-+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 445556666666666666665432 234555555566666666666666666666555554
No 255
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=52.27 E-value=34 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~ 219 (687)
.+++.|-..|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 6889999999999999999999999874
No 256
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=51.87 E-value=2.1e+02 Score=34.88 Aligned_cols=130 Identities=9% Similarity=-0.031 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH--
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-- 430 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-- 430 (687)
.|.. |=.-|+...++.+|.+.|+..-+-. .-|...+..+.+-|+...++++|+.+.-.--+. -..-...+|-+-.
T Consensus 494 af~~-LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAF-LGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGP 570 (1238)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccc
Confidence 3444 5566777778888999988876543 235677888999999999999999883221111 1111122222222
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.++...|..-|+...+... -|...|..|..+|...|++..|.++|.+...-
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 34566777777777777665432 26677888888888888888888888776544
No 257
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.78 E-value=3.6e+02 Score=30.47 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------------------------HHHHcCChHHHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-------------------------MAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~-------------------------~~~~~g~~~~A~~l~~~M~ 414 (687)
.+|.+.++.+.|...|.+-......||..+=..-.. .+.+.|++..|...+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 467777788888888877665544444333211111 3445666666776666666
Q ss_pred HcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 415 ~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
... +-|.+.|+..--+|.+.|.+..|.+=-+.-
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 553 345566666666666666666665544333
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.03 E-value=95 Score=36.26 Aligned_cols=73 Identities=11% Similarity=-0.045 Sum_probs=32.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
..|+..+|.++-.+.+ .||--.|=-=+.+++..++|++-+++-+.++ ...-|-+.+.+|.+.|+.++|.+
T Consensus 696 ~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 696 LIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 3444444444443332 2444444444455555555544444333322 12334445555555555555554
Q ss_pred HHH
Q 005628 444 VEE 446 (687)
Q Consensus 444 l~~ 446 (687)
.+.
T Consensus 766 Yip 768 (829)
T KOG2280|consen 766 YIP 768 (829)
T ss_pred hhh
Confidence 443
No 259
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.48 E-value=2.8e+02 Score=28.85 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=59.6
Q ss_pred HHHHHH-hhccHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 358 RLSEDA-KKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 358 lI~~~~-k~g~~~~A~~lf~~M~~~gi----~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
++...| .....++|.+.|++....+. ..+...-.+++....+.|..++-..+++..... ++..-...+|.++
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 455545 33356788888988887422 446666677777777888766655555555443 4566677888888
Q ss_pred HhCCChHHHHHHHHHHHHCC-CCCC
Q 005628 433 CNNGDVDKACSVEEHMLEHG-VYPE 456 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g-v~pd 456 (687)
+...+.+...++++.....+ +.+.
T Consensus 212 a~~~d~~~~~~~l~~~l~~~~v~~~ 236 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSNDKVRSQ 236 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTSTS-TT
T ss_pred hccCCHHHHHHHHHHHcCCcccccH
Confidence 88888888888888877754 4433
No 260
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=50.42 E-value=2.9e+02 Score=32.57 Aligned_cols=80 Identities=8% Similarity=0.036 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 404 DMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 404 ~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.++++.+++..+. +-.|++.-|-++- |+..++++.|++...+..+-+-.-+...|..|.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3566777776654 4556666665554 455677888888888888876667888888888888888888888888775
Q ss_pred HHh
Q 005628 483 LRT 485 (687)
Q Consensus 483 M~~ 485 (687)
-.+
T Consensus 539 al~ 541 (799)
T KOG4162|consen 539 ALE 541 (799)
T ss_pred HHH
Confidence 443
No 261
>PRK15331 chaperone protein SicA; Provisional
Probab=50.12 E-value=1e+02 Score=29.26 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=63.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
-+-..|++++|..+|.-+...+ |.-.-|..=+.+ +-..++.++|...|......+. -|...+-.+=.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3456899999999999988754 233334444444 4456999999999987655443 23444455667888999999
Q ss_pred HHHHHHHHHHhc
Q 005628 475 RVYYLLHKLRTS 486 (687)
Q Consensus 475 ~A~~ll~~M~~~ 486 (687)
.|...|.....+
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988775
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.01 E-value=3.2e+02 Score=28.53 Aligned_cols=114 Identities=12% Similarity=0.039 Sum_probs=74.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g 436 (687)
+...|...|+.+.|..++..+...--........+=|..+.+.....+..++-...-.. | |...--.|-..+.-.|
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g 250 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVG 250 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999876543333444444455666666666666665555444 5 4555555667788889
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChH
Q 005628 437 DVDKACSVEEHMLEHG-VYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~g-v~pd~~ty~~Li~~~~~~g~~~ 474 (687)
+.+.|.+.+-.+.++. -.-|...=..||..+---|..|
T Consensus 251 ~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 251 RNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 9999988766665442 1224455566666666555444
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=46.98 E-value=41 Score=23.75 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778888889999999999888877
No 264
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.52 E-value=5.3e+02 Score=30.00 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=51.6
Q ss_pred HcCChHHHHHHHHHHHHcC-CCC-----CcchHHHHHHHHH--hCCChHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLG-INP-----RLRSYGPALSVFC--NNGDVDKACSVEE--------HMLEHGVYPEEPELEA 462 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-~~P-----d~~ty~~lI~~~~--~~g~~~~A~~l~~--------~M~~~gv~pd~~ty~~ 462 (687)
-.+++..|...+++|.... -.| ....+...+.|.. ..|+++.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 4788999999999998652 112 2334444454443 3589999999997 5555666666666654
Q ss_pred HHHHH--HhcC--ChHH--HHHHHHHHHh
Q 005628 463 LLRVS--VEAG--KGDR--VYYLLHKLRT 485 (687)
Q Consensus 463 Li~~~--~~~g--~~~~--A~~ll~~M~~ 485 (687)
|=... ...+ ..++ +..+++.+..
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 32222 1122 2222 6666666554
No 265
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.45 E-value=2.3e+02 Score=32.14 Aligned_cols=158 Identities=8% Similarity=0.002 Sum_probs=99.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCcchHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP--------MNEASLTAVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~--------pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~ty~~l 428 (687)
|--.|...|.-.+|++.|+.-.....+ ++...-+. ..+.....+....++|-++. ..+.++|...++.|
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 445677778888899888876543211 01110000 11122223344555665555 34534555555555
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcCHHH
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~ 507 (687)
=--|--.|++++|...|+..+. +.| |..+||-|=..++...+-++|+.-+++-..-..+....-||+=+.+..-|..
T Consensus 437 GVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 5556778999999999999876 445 5678999999999999999999999998877333333367884455555555
Q ss_pred HHhhcccchhhHHHHHhh
Q 005628 508 ARLGKKKWNESLIKDTME 525 (687)
Q Consensus 508 ~~a~~~~~~~~~v~ea~~ 525 (687)
.+|. +...+|+.
T Consensus 515 kEA~------~hlL~AL~ 526 (579)
T KOG1125|consen 515 KEAV------KHLLEALS 526 (579)
T ss_pred HHHH------HHHHHHHH
Confidence 5555 35556655
No 266
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.38 E-value=63 Score=23.69 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=16.1
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+.|-+.++..+++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 267
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=45.45 E-value=43 Score=27.41 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=23.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
.+...+..|+. ++++.+.+.|..|+.. -+++|.. .+..|+. ++++.+.+.|..++
T Consensus 29 ~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~----~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNL----EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHH----HHHHHHHHTTT-TT
T ss_pred HHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCC
Confidence 44444455553 3344444455555443 2333333 3444443 34444555555544
No 268
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.01 E-value=1.5e+02 Score=29.21 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
+.|.+.|-.+...+..-++...-.|..-|. ..+.++|..++....+. +-.+|...+.+|.+.|-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566667766666665545444444444443 45666666666655432 22455566666666666666666654
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=44.10 E-value=47 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (687)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777889999999999999999999975
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=43.73 E-value=1.3e+02 Score=36.98 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=43.9
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.+|-.+|++.+|+.+-.+|... -|... --.|+.-+...++.-+|-++..+-... +.-.+.-||+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 3445566777777776666431 22222 245566666667777776666654432 3445566666667
Q ss_pred hHHHHHHHH
Q 005628 438 VDKACSVEE 446 (687)
Q Consensus 438 ~~~A~~l~~ 446 (687)
+++|..+-.
T Consensus 1042 ~~eAlrva~ 1050 (1265)
T KOG1920|consen 1042 WEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHH
Confidence 777766544
No 271
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=2.6e+02 Score=30.38 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhC-----CCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLD-----EVP---------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~-----gi~---------pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
+.|.+.|++..|..-|+..... +.. .-..+++.|.-+|.|.+++.+|++.-+.....+ .+|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4678999999999888875431 111 112344444445555555555555544433321 1121111
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
=-==.+|...|+++.|+..|+.+.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1111234444555555555555544
No 272
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.14 E-value=45 Score=34.79 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.5
Q ss_pred CCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005628 185 KKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233 (687)
Q Consensus 185 ~g~~P~~~-tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll 233 (687)
..+.||.. -||..|....+.||+++|+.|.++.++.|+.--..||-.-+
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 34456544 56899999999999999999999999999876555554443
No 273
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.95 E-value=2e+02 Score=28.16 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHH-HHHhCCChH--HHHH
Q 005628 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS-VFCNNGDVD--KACS 443 (687)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~-~~~~~g~~~--~A~~ 443 (687)
++++++-.++.. ++...-.....|++++|.+-++++.+. .++--...|.-+.. ++|.++.-+ +|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 566666666543 444444556677788877777766533 12223445666666 677776543 4444
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHH--------------HhcCChHHHHHHHHHHHhc
Q 005628 444 VEEHMLEHGVYPEEP----ELEALLRVS--------------VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 444 l~~~M~~~gv~pd~~----ty~~Li~~~--------------~~~g~~~~A~~ll~~M~~~ 486 (687)
++.-... +..|... .+-..|.|. .+.|+++.|.++++-|..-
T Consensus 91 l~~~l~~-~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 91 LYSILKD-GRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHhc-CCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4544433 3444332 222233333 3577888888888877653
No 274
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.65 E-value=2.2e+02 Score=32.01 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=81.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~ 438 (687)
++.+..|+++.|...|-+-..-.. +|.+-|+.=..+|++.|++++|++=-.+-. .+.|+. --|+-.=.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccH
Confidence 345688999999999998877653 489999999999999999999987655544 356775 5688887888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
++|..-|.+=++.. .-|...++-|.+++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999999877652 23556666666666
No 275
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=40.61 E-value=3.6e+02 Score=26.38 Aligned_cols=107 Identities=10% Similarity=-0.055 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCHHH
Q 005628 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPE 459 (687)
Q Consensus 383 i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---gv~pd~~t 459 (687)
+.|++..--.|-.++...|+..||...|.+-..-=+.-|....-.+-.+....++...|...++.+.+. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 467877777889999999999999999998765334556677777778888899999999999998775 334553
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
--.+-+.|...|...+|+.-|+...+. .+.|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ 194 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQ 194 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHH
Confidence 344667888999999999999999998 66665
No 276
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.58 E-value=88 Score=32.67 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=31.0
Q ss_pred CcccccccCCcccccccccccccccccccccccchhhhHhhhcccccCCCcc
Q 005628 85 TASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSL 136 (687)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (687)
.+++--+.+..+..|.... +..++.+...||....|+-+-.|++.......
T Consensus 35 ~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~~ 85 (412)
T KOG2297|consen 35 VVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGVK 85 (412)
T ss_pred HHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCcc
Confidence 3444444455555554443 45556777788888888888877766544443
No 277
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.94 E-value=4.9e+02 Score=27.43 Aligned_cols=40 Identities=25% Similarity=0.157 Sum_probs=22.5
Q ss_pred HHHHHHH-HHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 192 FQLRVEL-DMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 192 ~tyn~lI-~~~~k~g~-~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
..++.|. +.+.+.|- ..-|.++|..-... -..|.||..+-
T Consensus 166 tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lr 207 (412)
T KOG2297|consen 166 TVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLR 207 (412)
T ss_pred HHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHH
Confidence 4555554 45555553 45567777765532 23466777666
No 278
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=38.83 E-value=3.1e+02 Score=25.16 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
++..|+++.|++.|.+-... ++-+...||.--.++--.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44556666666666554433 223445566666666666666666655555443
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.44 E-value=3.8e+02 Score=25.95 Aligned_cols=126 Identities=17% Similarity=0.076 Sum_probs=70.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.+..++|+.-|.++.+-|.. .|. .| ..|. +-......|+...|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g----~Yp--vL------------A~mr--------------~at~~a~kgdta~AV~ 115 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG----SYP--VL------------ARMR--------------AATLLAQKGDTAAAVA 115 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC----cch--HH------------HHHH--------------HHHHHhhcccHHHHHH
Confidence 66788888888888888876532 332 11 0110 2234567788888888
Q ss_pred HHHHHHhCCCCCCHHH-HHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEAS-LTAVGR--MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 374 lf~~M~~~gi~pd~~t-yn~LI~--~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|++.-.....|-+.- ..-|=. .+..+|.++.....++-+-..|-......-..|=-+-.+.|++.+|.+.|..+..
T Consensus 116 aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 116 AFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888876655554331 111111 2334666666666665554444322333334444455566777777776666655
Q ss_pred C
Q 005628 451 H 451 (687)
Q Consensus 451 ~ 451 (687)
.
T Consensus 196 D 196 (221)
T COG4649 196 D 196 (221)
T ss_pred c
Confidence 4
No 280
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.13 E-value=39 Score=30.83 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=26.2
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~ 201 (687)
+.+.+...+|+.||..|.+.| -+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G------~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERG------NPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCC------CCCc--cHHHHHHHh
Confidence 336788899999999997765 4454 689998765
No 281
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.61 E-value=1.7e+02 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
|..|+.-|-..|..++|.+++..+.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666666666666554
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=37.50 E-value=2e+02 Score=28.29 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=57.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCh
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPELEALLRVSVEAGKG 473 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---gv~pd~~ty~~Li~~~~~~g~~ 473 (687)
+.+.|+ ++|.+.|-.+...+..-+...--.|- .|--..+.++|..++.+..+. +-.+|...+.+|...|-+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 46888888888776544444444444 444467889999998887653 4478899999999999999999
Q ss_pred HHHHH
Q 005628 474 DRVYY 478 (687)
Q Consensus 474 ~~A~~ 478 (687)
+.|+-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 98863
No 283
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=37.19 E-value=2.3e+02 Score=28.42 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~ 430 (687)
.|+.+.+.+.+.+|+...++-.+.. +-|.-+=..|+..||-.|++++|..-++-.-.. ...+-..+|..+|.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4556666666666666666555442 234455566666677777777666555443322 23344455555554
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=36.93 E-value=5.8e+02 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005628 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (687)
Q Consensus 187 ~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (687)
..|| +..|.|+ +|-...+++..+++++.|...
T Consensus 139 ls~d-iv~~lll-SyRdiqdydamI~Lve~l~~~ 170 (374)
T PF13281_consen 139 LSPD-IVINLLL-SYRDIQDYDAMIKLVETLEAL 170 (374)
T ss_pred cChh-HHHHHHH-HhhhhhhHHHHHHHHHHhhcc
Confidence 4556 4445555 488888999999999999864
No 285
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.48 E-value=1.6e+02 Score=29.51 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRV 466 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~ 466 (687)
|.+..|..+.+.+.+++|+.+..+-.+.. .-|.-+-..++.-||-.|++++|..-++-.-.. ...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 55667788888999999999988876652 346667778999999999999998766554332 345667889999887
Q ss_pred HH
Q 005628 467 SV 468 (687)
Q Consensus 467 ~~ 468 (687)
-.
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 64
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=36.41 E-value=2.4e+02 Score=32.98 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--- 460 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty--- 460 (687)
+-|....-.|-+++.+.|.-++|.+.|-. .+. | -..++.|...+++.+|.++-+... .|.+.|.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak 915 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAK 915 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHH
Confidence 34555566777788888888877776643 222 2 245566667777777766655431 1222221
Q ss_pred -----------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 461 -----------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 461 -----------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
---|..+.++|+.-+|-+++.+|.+.
T Consensus 916 ~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 916 QAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 11245567788888888899888754
No 287
>PHA03100 ankyrin repeat protein; Provisional
Probab=36.34 E-value=1.2e+02 Score=33.72 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=82.6
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhc------cccccCCCcchhcccCCCCChhhh--HHHHHHHHH--
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDG------RSNLERGPDDQSRKKDWSIDNQDA--DEIRLSEDA-- 363 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g------~~~~a~~~~~~m~~~g~~pd~~ty--n~~lI~~~~-- 363 (687)
.++.|+.+ +++.+.+.|..|+.......+.++- .......+...+...|..++.... .+ .+...+
T Consensus 42 A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-pL~~A~~~ 116 (480)
T PHA03100 42 AKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT-PLLYAISK 116 (480)
T ss_pred hhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc-hhhHHHhc
Confidence 34555544 4445556787777654331122221 112222344455555655443221 22 233333
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhCCChH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVD 439 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~~g~~~ 439 (687)
..|.. ++++.+.+.|..++... -.+.+..++..|. .-.++++.+.+.|..++.... .+.+..++..|+.+
T Consensus 117 ~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence 55554 44555556676654332 2345666666662 123445555667766654322 24455666777654
Q ss_pred HHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCC--hHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYPEEPE--------LEALLRVSVEAGK--GDRVYYLL 480 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~t--------y~~Li~~~~~~g~--~~~A~~ll 480 (687)
+.+.+.+.|..|+... +.+.+...+..|. .+-+..++
T Consensus 191 ----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll 237 (480)
T PHA03100 191 ----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL 237 (480)
T ss_pred ----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH
Confidence 4445555666555321 1344445566666 54443333
No 288
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=2.5e+02 Score=28.87 Aligned_cols=99 Identities=5% Similarity=-0.023 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV- 466 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~- 466 (687)
.+-++++..+--.|.+.-..+++++..+..-+-+..--+.|...-...||++.|...|++.++..-..|..+.+.++..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456777777778888889999999888755556666777777778899999999999988876556666666665543
Q ss_pred ----HHhcCChHHHHHHHHHHHhc
Q 005628 467 ----SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ----~~~~g~~~~A~~ll~~M~~~ 486 (687)
|.-..++..|...+.++...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc
Confidence 34466777888888887765
No 289
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=35.38 E-value=3.6e+02 Score=24.81 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCc--chHHHHHHHHHhCCC
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL--RSYGPALSVFCNNGD 437 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~--~ty~~lI~~~~~~g~ 437 (687)
+.+..|+++.|++.|.+-..- .+-....||.=..++--.|+.++|++=+++-.+. |-+-.. ..|.---.-|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456889999999999988764 3456789999999999999999999988887765 322111 122222223556788
Q ss_pred hHHHHHHHHHHHHCC
Q 005628 438 VDKACSVEEHMLEHG 452 (687)
Q Consensus 438 ~~~A~~l~~~M~~~g 452 (687)
-+.|..=|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 899998888776655
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.46 E-value=2.4e+02 Score=32.87 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=31.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
|..-.-.+-+++.+.|..++|.+.|-.- + .| -+-++.|....++.+|.++-+..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455556777777777776665332 1 12 23456666777777777765543
No 291
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.47 E-value=1.7e+02 Score=28.32 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|+..+|..++..+...|+.++|.+++.++..-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678888888888888888888888887777766
No 292
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.72 E-value=6.7e+02 Score=28.12 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=82.1
Q ss_pred HhhccHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 363 AKKYAFQR-GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 363 ~k~g~~~~-A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
...|++-. ..++|+-++...-.|+.+-.-+.| +...|+++.+...+...... +-....+-.+++....+.|+.++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34555544 457778887776668877666665 45679999999988765543 344667788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+-+.|....++-..+. ..---..-..|-+|+++-.++++..-
T Consensus 377 ~s~a~~~l~~eie~~ei~-~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVL-TVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccCChhhe-eeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999988877633222 11111223456778888777776543
No 293
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.83 E-value=79 Score=33.01 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 383 VPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 383 i~pd~~t-yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
+.||..+ ||.-|+...+.||+++|+.+++|-++.|+.--..+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3355544 56777777778888888888887777776433333
No 294
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.59 E-value=3.1e+02 Score=23.06 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
...|..-+........ +++ ++|+--...|+..|..+|-.+++.+.-+=-++...++++.|..
T Consensus 10 ~~~~k~~~~rk~~Ls~-eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 10 AQVYKYSLRRKKVLSA-EEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHHHHhccCH-HHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 3445554544333332 222 7888888888888888888777665444444444444444443
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=3.4e+02 Score=31.20 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=64.5
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
..-|.. |=++..+.|++..|.+.|..-.. |..|+-.+...|+-+.-..+-..-++.|. .|...-
T Consensus 666 ~~Kw~~-Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 666 EVKWRQ-LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred hHHHHH-HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 345556 77888899999999999987654 77889999999998877777777777765 466677
Q ss_pred HHHhCCChHHHHHHHHH
Q 005628 431 VFCNNGDVDKACSVEEH 447 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~ 447 (687)
+|...|+++++.+++.+
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 88899999999988754
No 296
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.11 E-value=5.6e+02 Score=26.63 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=79.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
++..+-+...+.+..+.+..|+ .+..-...|..+...|++..|+++..+.... +. ...-|+++=+- ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHH
Confidence 6677777778777777777776 3456677788888999999999999988754 10 11112111111 122
Q ss_pred hHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 005628 438 VDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (687)
Q Consensus 438 ~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~ 502 (687)
+++-....+++.+.. ..-|...|..++.||.-.|+...+.+=+..--.. .+...+..++..+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~--~i~~~~~~vv~~~~ 240 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTS--AIHSTTFSVVRSYV 240 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 333344444443321 2468899999999999999776654333322122 22333555555553
No 297
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.05 E-value=5.3e+02 Score=28.14 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=72.2
Q ss_pred HHHHcCChHHHHHHHHHHHHc-----C---------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005628 396 MAMSMGDGDMAFDMVKRMKSL-----G---------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~-----g---------~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (687)
.|.+.|++..|..-|+..... + ...-+.+++.|..+|.+.++..+|.+.-+..++.+ .+|+-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 467788888887777663321 1 11345678888899999999999999888877653 23443333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcC
Q 005628 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (687)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~ 504 (687)
-==.+|...|+++.|...|+++... .|.--.... |..+...
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 3345677889999999999999987 444334444 5555443
No 298
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.03 E-value=6.2e+02 Score=26.23 Aligned_cols=120 Identities=8% Similarity=0.000 Sum_probs=67.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g 436 (687)
++....+.|..+.-..+++..... ++..--..++.+++...+.+...++++.....+ +.+.- ...++.++...+
T Consensus 175 v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~ 249 (324)
T PF11838_consen 175 VYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSN 249 (324)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CS
T ss_pred HHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCC
Confidence 555666777765555555555543 477888999999999999999999999888754 54333 345555666444
Q ss_pred Ch--HHHHHHHHH----HHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHH
Q 005628 437 DV--DKACSVEEH----MLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKL 483 (687)
Q Consensus 437 ~~--~~A~~l~~~----M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~ll~~M 483 (687)
.. +.+++.+.+ +.+ ....+......++..+ +.....+++.++|+.-
T Consensus 250 ~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~ 305 (324)
T PF11838_consen 250 PVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDK 305 (324)
T ss_dssp TTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 44 777777654 222 2233322445555543 3334444555555443
No 299
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.92 E-value=82 Score=22.76 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~ 415 (687)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555554443
No 300
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=30.90 E-value=7.3e+02 Score=27.00 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=77.9
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-----CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----M-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~-----g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
.|+-++|++++..+....-.++..||..+-+.|-. . ...++|...+.+- ..+.||.++=-.+..-+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg--Fe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG--FEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH--HcCCccccchHHHHHHHHHc
Confidence 89999999999997766667888888887775543 1 2356677666643 23446554422222222333
Q ss_pred CC-hH---HHHHHH---H-HHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GD-VD---KACSVE---E-HMLEHGV---YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~-~~---~A~~l~---~-~M~~~gv---~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|. .+ +..++- . ...++|. ..|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32 21 222222 2 2223443 367778899999999999999999999999876
No 301
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.86 E-value=1.6e+02 Score=28.39 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=34.2
Q ss_pred HcCChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...+.+......+.+.+. ...|+...|..++..+...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555444444444432 4567888888888888888888888777777754
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=30.33 E-value=80 Score=19.56 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=8.6
Q ss_pred HHHHHHHcCChHHHHHHH
Q 005628 393 VGRMAMSMGDGDMAFDMV 410 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~ 410 (687)
+-..+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444455555554444
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.29 E-value=1.4e+02 Score=19.28 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (687)
.+|..+-..|-..|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788889999999999999999998763
No 304
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=30.01 E-value=1e+03 Score=28.37 Aligned_cols=111 Identities=9% Similarity=0.025 Sum_probs=74.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 375 f~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
+.++....+.-|...|-.|.-++..+|+++.+-+.|++.... +.-....|..+-..|.-+|.-..|..+.++-....-.
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 334444445567888888888889999999999999886543 3345567788888888888888888888876544333
Q ss_pred CCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 005628 455 PEEPELEALLRVSV--EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 455 pd~~ty~~Li~~~~--~~g~~~~A~~ll~~M~~~ 486 (687)
|+..+--.|+...| +-+..++++.+-.+..+.
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~ 423 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISL 423 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 54444444443333 345666766666666553
No 305
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.91 E-value=6.3e+02 Score=27.45 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=41.6
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHH--cCChHHHHHHHHHHHHc
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA--SLTAVGRMAMS--MGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~--tyn~LI~~~~~--~g~~~~A~~l~~~M~~~ 416 (687)
..+.+.+++..|.++|+++..+ ++++.. .|..|..+|-. .-+.++|.+.|+.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 666555 45555566654 56777899999877654
No 306
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=29.81 E-value=3.3e+02 Score=23.78 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=27.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+.|++++|..+.+.+ ..||...|-+|-. -+.|..+++..-+.+|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44556666666655554 4566666655543 3555555555555555554
No 307
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.70 E-value=2.3e+02 Score=25.70 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
+..+-++.+....+.|+......-+++|-+..|+..|.++|+-++.. +.+.-..|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44555666666778888888888888888888888888888887754 333333455544
No 308
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=29.51 E-value=4.4e+02 Score=24.03 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=83.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH-HHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~~~ 435 (687)
....+...+.+..+...+...... ........+..+...+...+....+...+.........+ ......... .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHc
Confidence 556667777778887777776653 334455667777777777788888888888776653332 122222223 67788
Q ss_pred CChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|+.+.|...+.......- ......+......+...++.+.+...+.+....
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 888888888888754211 123344444445566778888888888887776
No 309
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.25 E-value=6.4e+02 Score=25.87 Aligned_cols=98 Identities=7% Similarity=0.008 Sum_probs=62.1
Q ss_pred HHHHHHhhcc---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--
Q 005628 358 RLSEDAKKYA---FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF-- 432 (687)
Q Consensus 358 lI~~~~k~g~---~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~-- 432 (687)
|+.+|...+. .++|..+++.+...... ...+|--=|+.+-+.++.+++.+++..|... +.-....+..++..+
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHH
Confidence 5666666664 45677777777654322 1344545566666689999999999999976 221334555555555
Q ss_pred -HhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 433 -CNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 433 -~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
.... ...|...++.+....+.|...
T Consensus 168 l~~~~-~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 168 LAEKS-PELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHhhC-cHHHHHHHHHHHHHHhCCChh
Confidence 4433 456777777777666666653
No 310
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.06 E-value=9.2e+02 Score=27.61 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=76.9
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhCCChH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVD 439 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~~~g~~~ 439 (687)
|--.|.+++|.+.|+...... +-|...||-|=..++...+.++|+.-+.+..+ ++|+- +=||.-| .|...|.++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~yk 515 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYK 515 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHH
Confidence 445788899999998887642 23667899998888888899999999888765 45654 3455555 577888888
Q ss_pred HHHHHHHHHH---HC------CCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 440 KACSVEEHML---EH------GVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 440 ~A~~l~~~M~---~~------gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
+|.+.|=+.+ ++ +..++...|.+|=.++.-.++.|-+
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 8887775533 22 2223456777776666666666533
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=28.58 E-value=2.9e+02 Score=24.06 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005628 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
..++|.-|-+-+...+-. .+.+--+=+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 346666666666655422 2222223344677889999999988766 5799998877644 46787777777777
Q ss_pred HHHHCC
Q 005628 447 HMLEHG 452 (687)
Q Consensus 447 ~M~~~g 452 (687)
.|..+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 777766
No 312
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.52 E-value=1.1e+02 Score=22.10 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=13.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
-.+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34566666666666666665543
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.49 E-value=5e+02 Score=24.34 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
.++.+++..++..|.-.. -.|...+|-..| +...|++++|..+|++..+.+... .|..-+.++|-...-|-..+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHhcCChHHH
Confidence 789999999999987541 124445666665 467899999999999998875332 45555555554333332222
Q ss_pred -HHHHHHhccCCCChhHHHHHHHHH
Q 005628 479 -LLHKLRTSVRKVSPSTADVIAKWF 502 (687)
Q Consensus 479 -ll~~M~~~~~g~~p~t~~~I~~~~ 502 (687)
.=.++... +..|++..+++.+.
T Consensus 98 ~~A~~~le~--~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 98 VHADEVLAR--DADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHh--CCCHhHHHHHHHHh
Confidence 22333445 66666665555554
No 314
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=27.65 E-value=1.2e+03 Score=28.70 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=28.9
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHH
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~l 306 (687)
..-++.+|..-|+ .-. .++ |...+-.+.+. |+....+++|..+
T Consensus 504 d~~Dm~RA~kCf~-------KAF---eLDatdaeaaaa~adt------yae~~~we~a~~I 548 (1238)
T KOG1127|consen 504 DSDDMKRAKKCFD-------KAF---ELDATDAEAAAASADT------YAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHH-------HHh---cCCchhhhhHHHHHHH------hhccccHHHHHHH
Confidence 3346667777774 111 222 55567888888 9999999999887
No 315
>PRK11906 transcriptional regulator; Provisional
Probab=27.28 E-value=6.1e+02 Score=28.32 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhCCChHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~~~g~~~~A 441 (687)
.....+|.++-+.-.+.+ .-|......+-.++.-.++.+.|..+|++-... .||. ..|..++. +-+|+.++|
T Consensus 317 ~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~--~~~G~~~~a 391 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVH--FHNEKIEEA 391 (458)
T ss_pred hHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHH--HHcCCHHHH
Confidence 345566777777766654 246666666666667788899999999986654 4554 44444443 446899999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 442 CSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 442 ~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.+.+++..+. =...-....-..|+.|+..+ +++|..++.+
T Consensus 392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 392 RICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 9988884432 22223344455566777665 5666666654
No 316
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.13 E-value=5.7e+02 Score=27.34 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=82.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHH----HHHHHHhCCChH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP----ALSVFCNNGDVD 439 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~----lI~~~~~~g~~~ 439 (687)
-.|.+.+|...++++.+. .+.|...++-.=++|.-.|+.+.-...++.+... -.||.-.|+- .--++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356777788888887764 5678888888888888889888888888877654 2355543332 233445678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.-++..+-+ +-|...-.++-+.+-..|+..++.+++.+-.+.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 8888777665433 235556667777777788888888877665443
No 317
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.58 E-value=1.2e+02 Score=25.13 Aligned_cols=26 Identities=8% Similarity=-0.105 Sum_probs=21.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+++.+.++.-.++|+++.+-|.++|-
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 67777788888899999998888773
No 318
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.34 E-value=3.5e+02 Score=26.32 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHHH-----HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 368 FQRGFEIYEKMCLDEVPMN--EASLT-----AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd--~~tyn-----~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
++.|+.+|+.+.+.--.|. .-..- ..+-.|.+.|.+++|.++++..... |+....-.-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 4567777777766533331 11122 2233677777777777777776653 555555555555554443
No 319
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=26.03 E-value=5e+02 Score=27.77 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=47.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC---CCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHH-----cCCCCCcch-HH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD---EVPMNEASLTA--VGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS-YG 426 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd~~tyn~--LI~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~t-y~ 426 (687)
++...-+.++.++|+++++++.+. --.||.+.|-. +.+.+-..|+..++.+++.+.++ .|+.|++.+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334444455777788888777653 22366666543 33444456777777777777766 567665543 44
Q ss_pred HHHHHHH-hCCChHH
Q 005628 427 PALSVFC-NNGDVDK 440 (687)
Q Consensus 427 ~lI~~~~-~~g~~~~ 440 (687)
.+=+-|- +.|++..
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 4433333 3354443
No 320
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.00 E-value=2.7e+02 Score=32.28 Aligned_cols=91 Identities=10% Similarity=0.049 Sum_probs=64.4
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHH------HHHHHHHHHHcCCCCCcchHHHH
Q 005628 357 IRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDM------AFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~tyn~LI~~~~~~g~~~~------A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
.|..+|..+|++.++.++++.+... |-+.=.-.||.-|+.+.+.|.++- |.+++++- -+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 3889999999999999999988763 444445578888999999997652 33444333 355688999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 005628 429 LSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+.+-..--.-....-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8887765554555555555544
No 321
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=25.77 E-value=9.1e+02 Score=26.48 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=67.0
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhCCChHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS--MGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDK 440 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~--~g~~~~A~~l~~~M~~~g~~Pd~~t--y~~lI~~~~~~g~~~~ 440 (687)
.|+-..|.++-.+-.+ -+.-|.-..--|+.+-.. .|+.+.|.+-|+.|... |..+- ...|.-..-+.|+-+.
T Consensus 97 AGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 3455555555443321 122344444445554443 68888888888887654 33222 2233334456677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
|...-++.-+.- .-=...+.+.+...|..|+++.|++|++.-+.
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777666654432 11235667788888888888888888876554
No 322
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.68 E-value=4.3e+02 Score=22.71 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
....+|.-|...+++++|.+-+.++......++++..-.....=-+...-+....++..+.+.++......-.++.+.+-
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~ 83 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLE 83 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Q ss_pred hcCChHH----HHHHHHHHHhc
Q 005628 469 EAGKGDR----VYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~----A~~ll~~M~~~ 486 (687)
...+.+- |...+.++...
T Consensus 84 ~l~dl~~D~P~a~~~la~~~a~ 105 (113)
T smart00544 84 DIEDLELDIPNAWRNLAEFVAR 105 (113)
T ss_pred hChhhhcccccHHHHHHHHHHH
No 323
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=24.57 E-value=68 Score=29.33 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
|.-..|..+|..|++.|-.|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 444445555555555555555 3444443
No 324
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=24.27 E-value=77 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~ 407 (687)
-|...|+.|-..|...|++++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 35677888888888888887775
No 325
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.08 E-value=1.2e+03 Score=28.45 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=48.4
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHH---------------HHHHH
Q 005628 369 QRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP---------------ALSVF 432 (687)
Q Consensus 369 ~~A~~lf~~M-~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~---------------lI~~~ 432 (687)
++..+.+.++ .+.|+..+...+..++... .|++..++.+++++... ...+.+|+.. +|+++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidAL 258 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDAL 258 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3334444443 4457777777777666544 47888888888887632 2234444442 33333
Q ss_pred HhCCChHHHHHHHHHHHHCCCC
Q 005628 433 CNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
. .++...++.+++++.+.|..
T Consensus 259 ~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 259 A-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred H-cCCHHHHHHHHHHHHHcCCC
Confidence 3 46666777777777666654
No 326
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.99 E-value=2.7e+02 Score=23.44 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 373 ~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
++|+--...|+..|...|-++++.+--+=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 88888888999999999999999888888888889999888754
No 327
>PHA02989 ankyrin repeat protein; Provisional
Probab=23.98 E-value=2.1e+02 Score=32.30 Aligned_cols=143 Identities=16% Similarity=0.053 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCCCccccc-hhhHhhccc-cc-cCCCcchhcccCCCCChhhhHHHHHHHHHhhccH--HHHHHHHHHHHh
Q 005628 306 TFNEKENLGQFSNGHMKL-NSQLLDGRS-NL-ERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF--QRGFEIYEKMCL 380 (687)
Q Consensus 306 lf~eM~~~g~~Pd~~ty~-~~~li~g~~-~~-a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~--~~A~~lf~~M~~ 380 (687)
+.+.+.+.|..+|.. +. ...+....+ .. -..+...+...|..+|...+...-+....+.+.. ....++.+.+.+
T Consensus 18 ~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~ 96 (494)
T PHA02989 18 ALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLK 96 (494)
T ss_pred HHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHH
Confidence 334455678888776 32 112222111 11 1234555666776666433211133333444322 344677888888
Q ss_pred CCCCCCHHH---HHHHHHHHHH--cCChHHHHHHHHHHHHcCCCC-Cc---chHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 005628 381 DEVPMNEAS---LTAVGRMAMS--MGDGDMAFDMVKRMKSLGINP-RL---RSYGPALSVFCN-NGDVDKACSVEEHMLE 450 (687)
Q Consensus 381 ~gi~pd~~t---yn~LI~~~~~--~g~~~~A~~l~~~M~~~g~~P-d~---~ty~~lI~~~~~-~g~~~~A~~l~~~M~~ 450 (687)
.|..+|... .+.|..+... .|. .++++.+.+.|..+ +. .-+++|.-++.. .++ .++.+.+.+
T Consensus 97 ~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~----~~iv~~Ll~ 168 (494)
T PHA02989 97 FGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK----KDVIKILLS 168 (494)
T ss_pred CCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC----HHHHHHHHH
Confidence 887766443 3444433222 233 35666667788777 33 345555544332 244 345666777
Q ss_pred CCCCCCH
Q 005628 451 HGVYPEE 457 (687)
Q Consensus 451 ~gv~pd~ 457 (687)
.|..|+.
T Consensus 169 ~Gadi~~ 175 (494)
T PHA02989 169 FGVNLFE 175 (494)
T ss_pred cCCCccc
Confidence 8877665
No 328
>PHA02989 ankyrin repeat protein; Provisional
Probab=23.80 E-value=6.2e+02 Score=28.37 Aligned_cols=117 Identities=9% Similarity=-0.059 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCCCCccccchh-hHhhccc--c-ccCCCcchhcccCCCC-Chhh--hHHHHHHHHHhh--ccHHHHHH
Q 005628 303 LDSTFNEKENLGQFSNGHMKLNS-QLLDGRS--N-LERGPDDQSRKKDWSI-DNQD--ADEIRLSEDAKK--YAFQRGFE 373 (687)
Q Consensus 303 A~~lf~eM~~~g~~Pd~~ty~~~-~li~g~~--~-~a~~~~~~m~~~g~~p-d~~t--yn~~lI~~~~k~--g~~~~A~~ 373 (687)
..++.+.+.+.|..+|....... .|..+.. . ....+...+..+|..+ +... -.+ .+..++.. +. .+
T Consensus 87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t-pLh~a~~~~~~~----~~ 161 (494)
T PHA02989 87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN-LLHMYLESFSVK----KD 161 (494)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC-HHHHHHHhccCC----HH
Confidence 45667777888887776554311 2221111 0 1123455566777776 3321 112 33333322 23 34
Q ss_pred HHHHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 374 IYEKMCLDEVPMNEA---SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 374 lf~~M~~~gi~pd~~---tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
+.+.+.+.|..|+.. ...+-+..+++.+--..-.++++.+.+.|..++...
T Consensus 162 iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~ 215 (494)
T PHA02989 162 VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN 215 (494)
T ss_pred HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence 555566667665541 111222333333211122355555666676655543
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.28 E-value=96 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=14.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++.+.|+.++|...|+++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 4455667777777777776665
No 330
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.18 E-value=4.6e+02 Score=25.67 Aligned_cols=89 Identities=10% Similarity=-0.099 Sum_probs=55.8
Q ss_pred HHHhhccHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHHcCC--hHHHHHHHHHHHHcCCCCCc----chHHHHHHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGR-MAMSMGD--GDMAFDMVKRMKSLGINPRL----RSYGPALSV 431 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~--gi~pd~~tyn~LI~-~~~~~g~--~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~ 431 (687)
.....|++++|.+-++++.+. .++--...|.-+.. ++|..+. +-+|.-++..+... ..|.. +.+-.-|.|
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~YilG 116 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIAYILG 116 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHHHHHH
Confidence 345677888888888777642 12223445666666 7777665 45777777766554 33432 334445555
Q ss_pred HH--------------hCCChHHHHHHHHHHHH
Q 005628 432 FC--------------NNGDVDKACSVEEHMLE 450 (687)
Q Consensus 432 ~~--------------~~g~~~~A~~l~~~M~~ 450 (687)
.| +.|+++.|++.++-|.+
T Consensus 117 l~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 117 LADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 54 56888999998888864
No 331
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.10 E-value=1.1e+03 Score=26.58 Aligned_cols=109 Identities=8% Similarity=0.044 Sum_probs=68.1
Q ss_pred HHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 370 RGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 370 ~A~~lf~~M-~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+..+.+... ...|+..+......++. ...|++..|+.++++....+ ....|+..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------
Confidence 333444433 34677777777766654 34699999999998865432 2234555443322
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcC
Q 005628 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (687)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~ 504 (687)
|+ ++...+..+++++...+....|+.++.+|.+. |..|..+-. +..+++.
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~--G~d~~~~~~~l~~~~r~ 294 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQE--GQDIYKFLWDSIEFTHT 294 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 33 26666777777766666667899999999988 888873322 4444443
No 332
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=6.1e+02 Score=27.11 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCcchHHHH--HHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH-
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPA--LSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE- 459 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~l--I~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t- 459 (687)
-.++...-+.++.++|+++++++.+. --.||.+.|-.. ...+...||..++.+++++..+ .|+.|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 44455555677999999999999854 234777777544 4455567999999999998877 688886654
Q ss_pred HHHHH-HHHHhcCChHHHH
Q 005628 460 LEALL-RVSVEAGKGDRVY 477 (687)
Q Consensus 460 y~~Li-~~~~~~g~~~~A~ 477 (687)
|..+= ..|-+.|++...+
T Consensus 159 fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 33333 3445556665443
No 333
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.30 E-value=9.9e+02 Score=28.04 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=55.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhCCChHH------HHHHHHHHHHCCCCCCHHHHHHH
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDK------ACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~g~~~~------A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+|+.+|..+|++..+.++++..... |-+-=...||..|..+.+.|.++. |.++++.. .+.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 8999999999999999999988755 333344578888899999997643 44444443 366688888888
Q ss_pred HHHHH
Q 005628 464 LRVSV 468 (687)
Q Consensus 464 i~~~~ 468 (687)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 77653
No 334
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.18 E-value=1.2e+02 Score=23.50 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (687)
-=-+|.||...|++++|.+.++++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567778888888888877777654
No 335
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=21.77 E-value=6.1e+02 Score=23.01 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=88.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLGINP----RLRSYGPALSVF 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~-~~~~~g~~~~A~~l~~~M~~~g~~P----d~~ty~~lI~~~ 432 (687)
+...+...+....+.+.+.........+ ......... .+...|+++.|...+..... ..| ....+......+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 101 LGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHH
Confidence 4455556667888888888887654443 122222333 78889999999999998844 333 233444444446
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...++.+.|...+..............+..+-..+...+..++|...+......
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 678899999999998876532224677888888888889999999999988877
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=21.64 E-value=4e+02 Score=24.26 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+....+.|+..+-.+-+++|-+.+++.-|.++|+-++.+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 333344444444444444444444444444444444443
No 337
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.46 E-value=1.3e+02 Score=23.43 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.+|.||...|++++|.+++.++...
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35677777777777777777776654
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=21.31 E-value=4e+02 Score=27.88 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+..-+.|..+|.+.+|.++.+...... +.+...|-.|+..+...||--.|.+-++.|
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445555666666665555444331 234445555555666666544444444443
No 339
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=21.23 E-value=1e+03 Score=25.55 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=85.8
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCC----CCHHH----------HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVP----MNEAS----------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~----pd~~t----------yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
..+.|.|.+++|..=|+...+.... .+... ....+..+.-.|+...|+++...+.+. ..-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHH
Confidence 4567899999999999998875431 11111 122334555678888999988888775 34577778
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.--.+|...|++..|..=++..-+-.- -+..+.--+-..+-..|+.+.++...++-...
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 8888899999999988766555443322 23344444556667888888888887777655
No 340
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=21.23 E-value=5.1e+02 Score=21.88 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005628 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 371 A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
+.++++.+.++|+- +..-.+.+-.+--..|+.+.|.+++..+. .| ..-|...++++...|.-+.|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 56677777777643 22233333333335677888888888877 53 2457778888877777666543
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=21.17 E-value=7.5e+02 Score=25.77 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH--cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKS--LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS-- 467 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-- 467 (687)
.=|.+++..++|.+++...-+--. ..+.|.+.-..+| -|.|.++...+.++-......--.-+...|.++..-|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347788888888887665433222 2355555444444 4788888888888888776653333344476666555
Q ss_pred ---HhcCChHHHHHHH
Q 005628 468 ---VEAGKGDRVYYLL 480 (687)
Q Consensus 468 ---~~~g~~~~A~~ll 480 (687)
.-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 4579999999887
No 342
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.12 E-value=3.2e+02 Score=21.27 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=25.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCChHHHHHH
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS-----VEAGKGDRVYYL 479 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-----~~~g~~~~A~~l 479 (687)
+.+.|++=+|.++++++=..--.|....|-.||... .+.|+..-|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666666666666664432223445555555554 345555555554
No 343
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=20.48 E-value=2.2e+02 Score=23.02 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 005628 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP---ELEALLRVSVEAGK 472 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~---ty~~Li~~~~~~g~ 472 (687)
..++.|+++-...++ +.+...+. -+..+...+..|+. ++++.+.+.|..++.. -++.|.- .+..|.
T Consensus 3 ~A~~~~~~~~~~~ll----~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLL----EKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHH----HTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH
T ss_pred HHHHcCCHHHHHHHH----HCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCC
Confidence 456677765554444 45554554 22355666677774 5556666677777664 3344443 466666
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
.+ +++.+.+.
T Consensus 72 ~~----~~~~Ll~~ 81 (89)
T PF12796_consen 72 LE----IVKLLLEH 81 (89)
T ss_dssp HH----HHHHHHHT
T ss_pred HH----HHHHHHHc
Confidence 55 44445555
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.41 E-value=8.3e+02 Score=29.37 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=18.2
Q ss_pred hhhccceeeeeeccC-CCCceeEehh
Q 005628 10 LQQQNQLFSLTLCKS-SPPTLTVFNF 34 (687)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 34 (687)
+.|||-|||.-...- .|..|-++++
T Consensus 74 ~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 74 LNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ccCceEEEEEeecCCCCceEEEEecc
Confidence 345677898888777 5558888883
Done!