Query 005628
Match_columns 687
No_of_seqs 650 out of 3432
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 02:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.7E-68 1.3E-72 596.4 37.2 390 267-687 14-405 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.4E-34 1.5E-38 320.1 22.2 217 167-470 7-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1.2E-22 4.1E-27 231.1 18.0 297 147-486 83-436 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.2E-20 4.1E-25 214.6 25.8 314 147-486 149-504 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.8 2.4E-21 8.3E-26 223.6 9.7 124 350-474 126-253 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 1.9E-21 6.5E-26 224.5 4.5 153 278-471 127-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.5 9.9E-13 3.4E-17 141.0 26.3 285 159-486 76-368 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.9E-17 139.8 23.6 308 160-511 43-359 (388)
9 2y4t_A DNAJ homolog subfamily 99.5 1E-11 3.4E-16 135.4 25.5 292 159-486 35-358 (450)
10 2y4t_A DNAJ homolog subfamily 99.4 4.3E-11 1.5E-15 130.4 24.7 211 189-449 24-238 (450)
11 1b89_A Protein (clathrin heavy 99.3 1.9E-12 6.7E-17 139.7 7.4 222 162-486 15-236 (449)
12 3cv0_A Peroxisome targeting si 99.2 7.9E-10 2.7E-14 114.2 23.6 257 159-483 30-312 (327)
13 2gw1_A Mitochondrial precursor 99.2 6.6E-10 2.3E-14 122.7 23.9 294 159-511 15-392 (514)
14 3hym_B Cell division cycle pro 99.2 1.6E-09 5.6E-14 112.0 25.1 260 159-486 31-299 (330)
15 1fch_A Peroxisomal targeting s 99.2 9E-10 3.1E-14 116.3 23.1 257 159-481 73-354 (368)
16 4eqf_A PEX5-related protein; a 99.2 3.2E-10 1.1E-14 120.1 19.2 245 191-486 65-310 (365)
17 4eqf_A PEX5-related protein; a 99.2 5.5E-10 1.9E-14 118.3 20.8 258 159-482 74-352 (365)
18 1fch_A Peroxisomal targeting s 99.2 1.2E-09 4.3E-14 115.1 23.3 274 164-486 39-314 (368)
19 3cv0_A Peroxisome targeting si 99.1 5.4E-09 1.9E-13 107.8 24.1 246 192-486 22-269 (327)
20 1b89_A Protein (clathrin heavy 99.1 3.7E-11 1.3E-15 129.7 7.2 218 193-510 8-226 (449)
21 2gw1_A Mitochondrial precursor 99.1 4.4E-09 1.5E-13 116.1 24.0 263 162-486 201-478 (514)
22 3mkr_A Coatomer subunit epsilo 99.1 1.7E-09 5.9E-14 111.9 19.3 125 358-486 136-264 (291)
23 3mkr_A Coatomer subunit epsilo 99.1 2.5E-09 8.4E-14 110.7 19.3 237 198-506 6-249 (291)
24 3hym_B Cell division cycle pro 99.1 4.9E-09 1.7E-13 108.3 21.0 234 192-486 23-265 (330)
25 3ieg_A DNAJ homolog subfamily 99.1 3E-08 1E-12 103.3 26.8 257 159-486 12-301 (359)
26 3uq3_A Heat shock protein STI1 99.0 1.5E-08 5E-13 100.7 18.7 225 192-486 6-236 (258)
27 2ho1_A Type 4 fimbrial biogene 99.0 1.2E-07 4.1E-12 94.2 24.2 201 191-486 37-238 (252)
28 2vq2_A PILW, putative fimbrial 99.0 2.3E-07 7.8E-12 89.8 25.2 202 191-486 8-211 (225)
29 3ieg_A DNAJ homolog subfamily 98.9 2.2E-07 7.6E-12 96.7 26.6 257 159-486 46-335 (359)
30 3fp2_A TPR repeat-containing p 98.9 1.4E-07 4.7E-12 104.8 26.1 292 159-511 34-398 (537)
31 3fp2_A TPR repeat-containing p 98.9 8.6E-08 2.9E-12 106.5 21.2 256 164-486 216-491 (537)
32 1xnf_A Lipoprotein NLPI; TPR, 98.8 4E-08 1.4E-12 98.8 14.6 222 203-486 17-244 (275)
33 2q7f_A YRRB protein; TPR, prot 98.7 1.9E-07 6.5E-12 91.9 16.0 201 225-486 22-222 (243)
34 3nf1_A KLC 1, kinesin light ch 98.7 2.7E-07 9.3E-12 94.1 17.3 246 190-486 26-307 (311)
35 1xnf_A Lipoprotein NLPI; TPR, 98.7 7.5E-08 2.5E-12 96.8 12.8 250 162-480 17-269 (275)
36 3uq3_A Heat shock protein STI1 98.7 2E-07 6.8E-12 92.3 15.4 217 159-451 14-236 (258)
37 2ho1_A Type 4 fimbrial biogene 98.7 3.7E-06 1.3E-10 83.3 24.6 201 159-461 46-246 (252)
38 1ouv_A Conserved hypothetical 98.7 6.4E-06 2.2E-10 83.1 26.3 226 191-486 6-251 (273)
39 2q7f_A YRRB protein; TPR, prot 98.7 1.6E-07 5.3E-12 92.5 12.9 202 190-452 22-223 (243)
40 2pl2_A Hypothetical conserved 98.6 1.8E-06 6.2E-11 84.6 20.1 200 189-485 3-213 (217)
41 2ond_A Cleavage stimulation fa 98.6 7.3E-06 2.5E-10 84.8 24.4 243 192-486 9-270 (308)
42 2vq2_A PILW, putative fimbrial 98.5 2.1E-06 7.2E-11 82.9 17.2 165 280-486 10-176 (225)
43 3u4t_A TPR repeat-containing p 98.5 4.2E-06 1.4E-10 83.8 19.5 156 294-486 84-250 (272)
44 2fo7_A Synthetic consensus TPR 98.5 3.6E-06 1.2E-10 73.6 16.7 129 354-486 4-132 (136)
45 3v32_B Ribonuclease ZC3H12A; r 98.5 3.9E-08 1.3E-12 92.8 3.8 80 605-687 25-116 (185)
46 3v33_A Ribonuclease ZC3H12A; r 98.5 5.5E-08 1.9E-12 93.9 3.1 80 605-687 25-116 (223)
47 3as5_A MAMA; tetratricopeptide 98.4 2.5E-06 8.7E-11 79.3 14.3 156 294-486 18-173 (186)
48 3ro2_A PINS homolog, G-protein 98.4 1.7E-06 5.7E-11 88.7 13.1 274 159-486 14-332 (338)
49 2ooe_A Cleavage stimulation fa 98.4 1.8E-05 6E-10 88.5 21.9 127 161-312 23-158 (530)
50 3sf4_A G-protein-signaling mod 98.4 1.1E-06 3.9E-11 93.2 10.5 274 159-486 18-336 (406)
51 2h6f_A Protein farnesyltransfe 98.3 2.3E-05 8E-10 84.0 20.5 231 192-486 98-348 (382)
52 2pl2_A Hypothetical conserved 98.3 1.3E-05 4.4E-10 78.5 16.7 174 294-508 15-202 (217)
53 1xi4_A Clathrin heavy chain; a 98.3 2.2E-05 7.4E-10 94.5 21.1 249 159-483 1058-1306(1630)
54 4a1s_A PINS, partner of inscut 98.3 1.2E-06 4.2E-11 93.7 9.9 274 159-486 57-372 (411)
55 2ond_A Cleavage stimulation fa 98.3 1.4E-05 4.9E-10 82.6 17.6 219 167-451 33-270 (308)
56 1ouv_A Conserved hypothetical 98.3 4.4E-05 1.5E-09 76.8 19.8 217 160-452 16-252 (273)
57 3edt_B KLC 2, kinesin light ch 98.3 5.3E-06 1.8E-10 82.9 12.6 234 202-485 12-280 (283)
58 3ro2_A PINS homolog, G-protein 98.3 8.2E-06 2.8E-10 83.4 13.9 245 192-486 6-292 (338)
59 4a1s_A PINS, partner of inscut 98.2 9.5E-06 3.3E-10 86.7 14.9 245 192-486 49-332 (411)
60 3nf1_A KLC 1, kinesin light ch 98.2 1.3E-05 4.4E-10 81.5 15.1 241 159-450 36-306 (311)
61 3sf4_A G-protein-signaling mod 98.2 1.2E-05 4.2E-10 85.1 15.3 248 189-486 7-296 (406)
62 3as5_A MAMA; tetratricopeptide 98.2 2.5E-05 8.4E-10 72.5 15.1 165 227-451 9-173 (186)
63 3edt_B KLC 2, kinesin light ch 98.2 9.6E-06 3.3E-10 81.0 12.4 236 162-450 13-280 (283)
64 2ooe_A Cleavage stimulation fa 98.2 0.00012 4E-09 81.7 21.8 241 192-486 231-492 (530)
65 2fo7_A Synthetic consensus TPR 98.1 1.7E-05 5.7E-10 69.2 11.7 122 294-451 11-132 (136)
66 3vtx_A MAMA; tetratricopeptide 98.1 0.00015 5.1E-09 68.0 18.2 156 294-486 15-170 (184)
67 3u4t_A TPR repeat-containing p 98.1 7E-05 2.4E-09 74.7 16.6 190 248-486 15-208 (272)
68 4abn_A Tetratricopeptide repea 98.1 3.3E-05 1.1E-09 85.3 15.1 214 206-483 83-318 (474)
69 2h6f_A Protein farnesyltransfe 98.0 0.00016 5.6E-09 77.4 19.0 238 159-467 106-363 (382)
70 3vtx_A MAMA; tetratricopeptide 98.0 0.00051 1.7E-08 64.3 20.1 156 350-511 4-161 (184)
71 2xm6_A Protein corresponding t 98.0 0.0015 5.2E-08 71.8 26.6 278 163-486 128-432 (490)
72 3ulq_A Response regulator aspa 98.0 7.9E-05 2.7E-09 79.2 15.1 237 198-486 110-368 (383)
73 1hz4_A MALT regulatory protein 98.0 0.00042 1.4E-08 72.9 20.6 274 160-486 24-322 (373)
74 2xm6_A Protein corresponding t 98.0 0.0023 8E-08 70.3 27.4 249 163-486 56-325 (490)
75 1qqe_A Vesicular transport pro 97.9 0.00022 7.6E-09 72.9 17.2 130 358-493 123-272 (292)
76 1hz4_A MALT regulatory protein 97.9 0.00081 2.8E-08 70.7 21.5 240 198-486 21-282 (373)
77 4abn_A Tetratricopeptide repea 97.9 0.00016 5.5E-09 79.7 15.9 156 294-486 112-287 (474)
78 1xi4_A Clathrin heavy chain; a 97.9 0.0017 5.8E-08 78.5 24.7 246 162-481 1088-1340(1630)
79 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00098 3.3E-08 63.8 16.6 124 358-486 12-150 (213)
80 3mv2_B Coatomer subunit epsilo 97.7 0.0012 4E-08 68.1 17.4 123 358-486 142-282 (310)
81 4i17_A Hypothetical protein; T 97.7 0.0035 1.2E-07 60.7 20.3 131 352-486 8-146 (228)
82 4i17_A Hypothetical protein; T 97.7 0.0015 5.1E-08 63.4 17.5 142 294-473 17-169 (228)
83 3q15_A PSP28, response regulat 97.7 0.00048 1.6E-08 73.0 15.0 234 200-486 110-365 (378)
84 1na0_A Designed protein CTPR3; 97.7 0.0014 4.7E-08 56.0 15.1 91 358-450 15-105 (125)
85 4gyw_A UDP-N-acetylglucosamine 97.6 0.00061 2.1E-08 79.1 16.4 161 280-485 11-173 (723)
86 4g1t_A Interferon-induced prot 97.6 0.0032 1.1E-07 68.2 20.4 300 159-486 60-401 (472)
87 3mv2_B Coatomer subunit epsilo 97.6 0.0014 4.8E-08 67.5 15.8 125 358-486 106-240 (310)
88 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0032 1.1E-07 64.6 18.2 117 358-479 122-254 (307)
89 1na0_A Designed protein CTPR3; 97.5 0.0019 6.4E-08 55.1 13.8 98 387-486 9-106 (125)
90 3qky_A Outer membrane assembly 97.5 0.0014 4.6E-08 65.4 14.4 160 294-486 25-224 (261)
91 1a17_A Serine/threonine protei 97.5 0.0035 1.2E-07 56.8 15.8 125 358-485 19-145 (166)
92 2vsy_A XCC0866; transferase, g 97.4 0.0025 8.5E-08 71.6 17.0 130 353-486 25-157 (568)
93 4g1t_A Interferon-induced prot 97.4 0.01 3.5E-07 64.2 21.1 275 192-493 52-368 (472)
94 4gyw_A UDP-N-acetylglucosamine 97.4 0.0036 1.2E-07 72.6 18.1 131 351-486 9-140 (723)
95 2vyi_A SGTA protein; chaperone 97.3 0.0048 1.6E-07 52.9 14.2 112 358-472 18-129 (131)
96 3ulq_A Response regulator aspa 97.3 0.00073 2.5E-08 71.6 10.3 235 159-450 112-367 (383)
97 2yhc_A BAMD, UPF0169 lipoprote 97.3 0.0055 1.9E-07 59.6 15.8 158 294-486 14-213 (225)
98 2r5s_A Uncharacterized protein 97.3 0.0018 6.2E-08 60.4 11.4 154 294-485 16-172 (176)
99 3u3w_A Transcriptional activat 97.2 0.01 3.5E-07 60.2 17.5 163 294-485 85-265 (293)
100 1qqe_A Vesicular transport pro 97.2 0.0017 5.8E-08 66.2 11.3 164 294-486 47-228 (292)
101 2ifu_A Gamma-SNAP; membrane fu 97.2 0.0038 1.3E-07 64.1 14.0 131 353-486 78-223 (307)
102 2lni_A Stress-induced-phosphop 97.2 0.0054 1.9E-07 53.0 13.0 91 358-450 22-112 (133)
103 2yhc_A BAMD, UPF0169 lipoprote 97.2 0.023 7.8E-07 55.1 18.8 88 361-452 105-214 (225)
104 3gw4_A Uncharacterized protein 97.1 0.0036 1.2E-07 59.0 12.0 129 358-486 32-176 (203)
105 1hh8_A P67PHOX, NCF-2, neutrop 97.1 0.015 5.2E-07 55.2 16.7 121 294-452 16-151 (213)
106 2qfc_A PLCR protein; TPR, HTH, 97.1 0.011 3.9E-07 59.9 16.6 163 294-484 85-264 (293)
107 2e2e_A Formate-dependent nitri 97.1 0.0047 1.6E-07 57.2 12.5 122 362-486 20-144 (177)
108 1p5q_A FKBP52, FK506-binding p 97.1 0.0075 2.6E-07 62.9 15.3 131 353-486 149-294 (336)
109 3urz_A Uncharacterized protein 97.1 0.01 3.4E-07 57.0 15.0 174 294-494 14-192 (208)
110 1elr_A TPR2A-domain of HOP; HO 97.1 0.013 4.5E-07 50.1 14.4 96 390-486 7-108 (131)
111 3qou_A Protein YBBN; thioredox 97.0 0.0031 1E-07 64.3 11.5 122 361-486 126-248 (287)
112 1elr_A TPR2A-domain of HOP; HO 97.0 0.0051 1.7E-07 52.9 11.3 109 354-466 7-121 (131)
113 2kck_A TPR repeat; tetratricop 97.0 0.0044 1.5E-07 51.7 10.5 93 392-486 11-106 (112)
114 1elw_A TPR1-domain of HOP; HOP 97.0 0.018 6E-07 48.3 14.5 97 388-486 5-101 (118)
115 2lni_A Stress-induced-phosphop 97.0 0.0092 3.1E-07 51.5 12.7 101 384-486 13-113 (133)
116 3q15_A PSP28, response regulat 96.9 0.0028 9.6E-08 67.0 10.6 234 160-450 111-364 (378)
117 2vyi_A SGTA protein; chaperone 96.9 0.025 8.4E-07 48.3 14.6 99 386-486 11-109 (131)
118 3u3w_A Transcriptional activat 96.9 0.011 3.8E-07 59.9 14.0 129 358-486 81-225 (293)
119 2kck_A TPR repeat; tetratricop 96.9 0.014 4.7E-07 48.5 12.3 95 354-452 9-107 (112)
120 2qfc_A PLCR protein; TPR, HTH, 96.9 0.069 2.4E-06 53.9 19.9 96 353-449 157-264 (293)
121 3q49_B STIP1 homology and U bo 96.8 0.022 7.6E-07 49.7 14.1 100 385-486 7-106 (137)
122 3qky_A Outer membrane assembly 96.8 0.039 1.4E-06 54.5 17.5 124 358-486 21-177 (261)
123 4ga2_A E3 SUMO-protein ligase 96.8 0.0073 2.5E-07 54.8 10.8 133 361-500 6-142 (150)
124 3qou_A Protein YBBN; thioredox 96.8 0.061 2.1E-06 54.4 18.5 164 192-449 118-282 (287)
125 2vsy_A XCC0866; transferase, g 96.7 0.022 7.5E-07 63.8 16.4 118 365-486 2-120 (568)
126 4e6h_A MRNA 3'-END-processing 96.7 0.069 2.4E-06 61.2 20.6 139 358-500 440-582 (679)
127 2dba_A Smooth muscle cell asso 96.7 0.043 1.5E-06 48.2 15.2 90 358-450 34-127 (148)
128 1elw_A TPR1-domain of HOP; HOP 96.7 0.041 1.4E-06 45.9 14.4 97 353-452 6-102 (118)
129 3gyz_A Chaperone protein IPGC; 96.7 0.027 9.1E-07 51.5 14.0 89 360-450 44-132 (151)
130 3ro3_A PINS homolog, G-protein 96.7 0.0071 2.4E-07 53.9 9.9 133 353-486 11-158 (164)
131 3gyz_A Chaperone protein IPGC; 96.7 0.019 6.6E-07 52.4 12.8 103 387-493 36-138 (151)
132 4gco_A Protein STI-1; structur 96.7 0.017 5.8E-07 50.8 11.9 89 360-450 21-109 (126)
133 2e2e_A Formate-dependent nitri 96.6 0.0095 3.2E-07 55.1 10.5 123 294-452 20-145 (177)
134 1a17_A Serine/threonine protei 96.6 0.053 1.8E-06 48.7 15.4 97 388-486 14-110 (166)
135 2pzi_A Probable serine/threoni 96.6 0.016 5.5E-07 66.7 14.3 124 358-486 439-563 (681)
136 3q49_B STIP1 homology and U bo 96.6 0.033 1.1E-06 48.5 13.1 98 351-451 9-106 (137)
137 3sz7_A HSC70 cochaperone (SGT) 96.6 0.027 9.2E-07 51.4 13.0 98 387-486 11-108 (164)
138 2xcb_A PCRH, regulatory protei 96.6 0.028 9.5E-07 50.1 12.8 88 360-449 26-113 (142)
139 4gco_A Protein STI-1; structur 96.5 0.068 2.3E-06 46.7 14.9 96 389-486 15-110 (126)
140 4ga2_A E3 SUMO-protein ligase 96.5 0.0085 2.9E-07 54.4 9.2 110 358-472 37-149 (150)
141 2vgx_A Chaperone SYCD; alterna 96.5 0.029 9.8E-07 50.7 12.7 96 389-486 23-118 (148)
142 4f3v_A ESX-1 secretion system 96.5 0.022 7.7E-07 57.7 13.0 126 358-486 108-237 (282)
143 3rjv_A Putative SEL1 repeat pr 96.5 0.27 9.3E-06 47.0 20.5 86 365-452 102-198 (212)
144 2dba_A Smooth muscle cell asso 96.5 0.061 2.1E-06 47.2 14.7 99 385-486 26-128 (148)
145 4gcn_A Protein STI-1; structur 96.5 0.043 1.5E-06 48.0 13.3 55 359-414 15-69 (127)
146 3upv_A Heat shock protein STI1 96.5 0.04 1.4E-06 47.5 13.0 96 389-486 6-101 (126)
147 2r5s_A Uncharacterized protein 96.4 0.059 2E-06 49.8 14.6 79 370-449 92-171 (176)
148 2xcb_A PCRH, regulatory protei 96.4 0.035 1.2E-06 49.4 12.5 97 388-486 19-115 (142)
149 2fbn_A 70 kDa peptidylprolyl i 96.4 0.042 1.4E-06 51.9 13.7 118 358-477 44-176 (198)
150 2xev_A YBGF; tetratricopeptide 96.4 0.096 3.3E-06 44.9 15.0 89 394-486 9-105 (129)
151 2vgx_A Chaperone SYCD; alterna 96.4 0.036 1.2E-06 50.1 12.5 101 348-451 17-118 (148)
152 3urz_A Uncharacterized protein 96.4 0.13 4.5E-06 49.0 17.2 132 294-464 64-197 (208)
153 3gw4_A Uncharacterized protein 96.4 0.019 6.5E-07 53.8 10.8 123 363-486 3-136 (203)
154 3upv_A Heat shock protein STI1 96.4 0.067 2.3E-06 46.1 13.6 92 358-451 10-101 (126)
155 3sz7_A HSC70 cochaperone (SGT) 96.3 0.059 2E-06 49.0 13.8 96 353-451 13-108 (164)
156 3e4b_A ALGK; tetratricopeptide 96.2 0.12 4.1E-06 56.1 17.9 109 366-486 231-351 (452)
157 4gcn_A Protein STI-1; structur 96.2 0.058 2E-06 47.2 12.4 109 388-499 9-123 (127)
158 3rjv_A Putative SEL1 repeat pr 96.2 0.21 7.3E-06 47.7 17.4 122 358-486 24-158 (212)
159 2pzi_A Probable serine/threoni 96.1 0.011 3.7E-07 68.2 8.9 173 248-472 403-583 (681)
160 3dra_A Protein farnesyltransfe 96.0 0.47 1.6E-05 48.6 19.9 239 203-497 45-298 (306)
161 3k9i_A BH0479 protein; putativ 96.0 0.0085 2.9E-07 51.5 5.7 85 365-450 3-89 (117)
162 4b4t_Q 26S proteasome regulato 96.0 0.36 1.2E-05 51.1 19.7 209 159-450 13-244 (434)
163 4f3v_A ESX-1 secretion system 95.9 0.043 1.5E-06 55.7 11.4 131 294-463 112-247 (282)
164 2xev_A YBGF; tetratricopeptide 95.8 0.14 4.9E-06 43.7 13.0 92 358-452 8-106 (129)
165 3e4b_A ALGK; tetratricopeptide 95.7 0.37 1.2E-05 52.2 18.8 222 193-486 143-387 (452)
166 3k9i_A BH0479 protein; putativ 95.6 0.022 7.4E-07 48.9 6.6 87 399-486 2-90 (117)
167 1hxi_A PEX5, peroxisome target 95.6 0.1 3.4E-06 45.2 11.0 88 360-450 25-113 (121)
168 1wao_1 Serine/threonine protei 95.5 0.048 1.6E-06 59.9 10.5 119 360-481 14-134 (477)
169 3n71_A Histone lysine methyltr 95.4 0.11 3.7E-06 57.2 13.2 126 361-486 318-464 (490)
170 1klx_A Cysteine rich protein B 95.3 0.29 9.9E-06 43.4 13.5 114 362-486 5-126 (138)
171 4b4t_Q 26S proteasome regulato 95.2 0.74 2.5E-05 48.5 18.9 125 361-485 104-244 (434)
172 1hxi_A PEX5, peroxisome target 95.2 0.096 3.3E-06 45.3 9.7 94 390-486 20-114 (121)
173 2fbn_A 70 kDa peptidylprolyl i 95.2 0.46 1.6E-05 44.4 15.4 99 387-486 38-151 (198)
174 2c2l_A CHIP, carboxy terminus 95.2 0.24 8.1E-06 49.8 14.0 94 353-450 6-100 (281)
175 1kt0_A FKBP51, 51 kDa FK506-bi 95.2 0.17 5.7E-06 55.1 13.7 130 353-486 270-415 (457)
176 1p5q_A FKBP52, FK506-binding p 95.1 0.28 9.5E-06 50.8 14.7 97 387-486 147-259 (336)
177 4e6h_A MRNA 3'-END-processing 94.8 0.2 6.7E-06 57.4 13.4 127 358-486 384-533 (679)
178 2c2l_A CHIP, carboxy terminus 94.8 0.25 8.4E-06 49.7 12.7 98 386-486 3-101 (281)
179 1wao_1 Serine/threonine protei 94.7 0.18 6.2E-06 55.2 12.4 116 294-446 16-134 (477)
180 1ihg_A Cyclophilin 40; ppiase 94.6 0.2 7E-06 52.8 12.1 91 358-450 229-335 (370)
181 2l6j_A TPR repeat-containing p 94.4 0.034 1.2E-06 46.3 4.4 62 388-450 5-66 (111)
182 3dra_A Protein farnesyltransfe 94.4 1.9 6.6E-05 44.0 18.4 230 161-451 44-287 (306)
183 3rkv_A Putative peptidylprolyl 94.2 0.53 1.8E-05 42.3 12.4 110 358-486 17-126 (162)
184 3ro3_A PINS homolog, G-protein 94.1 0.23 7.7E-06 43.6 9.5 99 388-486 10-118 (164)
185 3rkv_A Putative peptidylprolyl 93.9 0.44 1.5E-05 42.9 11.2 30 457-486 63-92 (162)
186 2if4_A ATFKBP42; FKBP-like, al 93.8 0.13 4.6E-06 53.4 8.5 124 358-486 185-328 (338)
187 3q7a_A Farnesyltransferase alp 93.7 3.3 0.00011 43.1 18.7 237 202-497 65-342 (349)
188 2kat_A Uncharacterized protein 93.6 0.28 9.7E-06 41.3 8.7 77 371-449 4-80 (115)
189 2uy1_A Cleavage stimulation fa 93.5 1 3.5E-05 49.4 15.2 176 294-486 223-413 (493)
190 1na3_A Designed protein CTPR2; 93.2 0.8 2.7E-05 36.0 10.6 61 389-450 11-71 (91)
191 3n71_A Histone lysine methyltr 93.0 0.35 1.2E-05 53.1 10.4 99 352-451 352-464 (490)
192 1klx_A Cysteine rich protein B 92.8 1.4 4.9E-05 38.7 12.5 116 294-453 5-128 (138)
193 2kat_A Uncharacterized protein 92.4 0.65 2.2E-05 39.0 9.4 80 405-486 3-82 (115)
194 1ihg_A Cyclophilin 40; ppiase 92.2 1.3 4.6E-05 46.4 13.4 97 389-486 225-336 (370)
195 1kt0_A FKBP51, 51 kDa FK506-bi 92.1 1.9 6.4E-05 46.6 14.8 97 387-486 268-380 (457)
196 2l6j_A TPR repeat-containing p 92.0 0.4 1.4E-05 39.5 7.3 67 352-422 5-71 (111)
197 2hr2_A Hypothetical protein; a 91.8 2.8 9.5E-05 38.3 13.2 103 359-461 18-146 (159)
198 3ma5_A Tetratricopeptide repea 91.6 0.95 3.2E-05 37.2 9.2 63 386-449 6-68 (100)
199 1na3_A Designed protein CTPR2; 91.3 1.3 4.6E-05 34.6 9.6 76 353-432 11-87 (91)
200 3q7a_A Farnesyltransferase alp 90.7 8.2 0.00028 40.0 17.2 226 160-451 64-331 (349)
201 3mkq_A Coatomer beta'-subunit; 90.6 3 0.0001 47.9 15.4 71 364-449 664-734 (814)
202 2if4_A ATFKBP42; FKBP-like, al 90.3 1.1 3.6E-05 46.4 10.1 95 389-486 181-293 (338)
203 3qww_A SET and MYND domain-con 90.2 1.5 5.1E-05 47.2 11.4 84 401-484 312-409 (433)
204 3qwp_A SET and MYND domain-con 90.1 0.98 3.3E-05 48.6 9.8 85 399-483 299-397 (429)
205 2hr2_A Hypothetical protein; a 90.0 3.4 0.00012 37.7 11.9 96 389-486 13-131 (159)
206 3qwp_A SET and MYND domain-con 89.6 1.3 4.5E-05 47.6 10.3 93 358-450 293-399 (429)
207 3ly7_A Transcriptional activat 89.2 8 0.00027 40.4 15.5 148 347-501 190-352 (372)
208 3ma5_A Tetratricopeptide repea 88.8 1.6 5.4E-05 35.8 8.3 65 421-486 6-70 (100)
209 3qww_A SET and MYND domain-con 88.5 1.3 4.6E-05 47.6 9.5 87 364-450 310-410 (433)
210 3mkq_A Coatomer beta'-subunit; 88.2 2 6.8E-05 49.5 11.5 74 358-449 635-708 (814)
211 3mkq_B Coatomer subunit alpha; 87.0 7.6 0.00026 36.0 12.3 103 361-484 14-116 (177)
212 2kc7_A BFR218_protein; tetratr 85.6 2.1 7.1E-05 34.4 7.1 55 360-415 8-63 (99)
213 1pc2_A Mitochondria fission pr 84.0 4.7 0.00016 36.5 9.0 48 368-416 14-64 (152)
214 1zu2_A Mitochondrial import re 83.5 3.1 0.0001 38.0 7.7 98 362-464 12-131 (158)
215 2kc7_A BFR218_protein; tetratr 81.9 5.4 0.00018 31.8 8.1 58 393-452 6-65 (99)
216 1wy6_A Hypothetical protein ST 81.6 28 0.00095 30.9 14.6 123 365-493 20-159 (172)
217 2uy1_A Cleavage stimulation fa 81.0 16 0.00054 39.8 13.8 23 359-381 220-242 (493)
218 1dce_A Protein (RAB geranylger 80.8 41 0.0014 37.1 17.4 132 368-504 89-238 (567)
219 2y69_E Cytochrome C oxidase su 75.7 15 0.00052 32.3 9.0 72 358-430 58-130 (152)
220 3mkq_B Coatomer subunit alpha; 75.6 36 0.0012 31.4 12.2 80 353-448 36-115 (177)
221 1v54_E Cytochrome C oxidase po 75.2 26 0.00089 29.2 9.8 71 359-430 16-87 (109)
222 1wdy_A 2-5A-dependent ribonucl 73.5 5.1 0.00017 39.0 6.5 43 398-440 190-234 (285)
223 3u64_A Protein TP_0956; tetrat 73.4 37 0.0013 34.1 12.6 122 352-485 155-297 (301)
224 3dss_A Geranylgeranyl transfer 73.3 85 0.0029 32.0 16.9 117 367-486 125-267 (331)
225 1k1a_A B-cell lymphoma 3-encod 72.8 2.8 9.6E-05 40.0 4.3 28 294-321 16-43 (241)
226 4gns_B Protein CSD3, chitin bi 72.4 48 0.0017 38.0 14.9 124 360-484 256-398 (754)
227 3ly7_A Transcriptional activat 72.2 13 0.00043 38.9 9.2 74 384-461 274-347 (372)
228 1k1a_A B-cell lymphoma 3-encod 71.4 9.7 0.00033 36.1 7.9 30 196-225 11-40 (241)
229 2ff4_A Probable regulatory pro 71.3 13 0.00046 38.9 9.5 68 391-459 175-247 (388)
230 1pc2_A Mitochondria fission pr 70.9 34 0.0012 30.7 10.6 82 403-486 14-100 (152)
231 4h7y_A Dual specificity protei 70.2 62 0.0021 29.1 12.1 111 386-500 12-137 (161)
232 2v5f_A Prolyl 4-hydroxylase su 68.8 25 0.00085 28.7 8.9 21 392-412 10-30 (104)
233 3bee_A Putative YFRE protein; 67.6 30 0.001 27.8 9.0 64 386-451 5-72 (93)
234 2v5f_A Prolyl 4-hydroxylase su 64.3 31 0.0011 28.1 8.6 63 424-486 7-75 (104)
235 1v54_E Cytochrome C oxidase po 62.8 19 0.00064 30.1 6.5 47 440-486 28-74 (109)
236 1zu2_A Mitochondrial import re 60.1 29 0.00098 31.4 8.0 95 398-497 13-129 (158)
237 1dce_A Protein (RAB geranylger 59.1 2.1E+02 0.0071 31.3 17.1 120 364-486 41-173 (567)
238 1nzn_A CGI-135 protein, fissio 58.7 47 0.0016 28.8 8.8 85 364-450 13-102 (126)
239 1wy6_A Hypothetical protein ST 57.0 51 0.0017 29.2 8.5 60 358-418 97-156 (172)
240 3jxi_A Vanilloid receptor-rela 56.6 11 0.00038 36.3 5.1 120 358-486 96-251 (260)
241 2ff4_A Probable regulatory pro 55.2 66 0.0022 33.5 11.1 79 425-504 174-257 (388)
242 3bee_A Putative YFRE protein; 54.3 82 0.0028 25.2 10.2 64 421-486 5-72 (93)
243 1wdy_A 2-5A-dependent ribonucl 52.6 15 0.00051 35.6 5.3 84 393-481 151-240 (285)
244 3b7b_A Euchromatic histone-lys 52.4 17 0.00058 34.3 5.6 116 359-486 115-236 (237)
245 2y69_E Cytochrome C oxidase su 51.9 33 0.0011 30.2 6.5 46 441-486 72-117 (152)
246 4h7y_A Dual specificity protei 51.6 50 0.0017 29.7 7.8 112 350-465 12-136 (161)
247 3dss_A Geranylgeranyl transfer 50.4 2.2E+02 0.0074 28.9 18.4 130 368-502 90-237 (331)
248 3u64_A Protein TP_0956; tetrat 49.5 83 0.0028 31.5 10.0 101 387-491 154-272 (301)
249 4fhn_B Nucleoporin NUP120; pro 48.0 1.8E+02 0.0062 35.0 14.8 142 358-507 818-987 (1139)
250 3kea_A K1L; tropism, ANK repea 47.6 52 0.0018 32.2 8.5 93 358-459 132-225 (285)
251 3lge_E Sorting nexin-9; comple 47.1 6.2 0.00021 24.5 0.8 11 677-687 3-14 (31)
252 3eu9_A Huntingtin-interacting 45.7 13 0.00045 34.9 3.5 117 358-486 112-236 (240)
253 2nsz_A Programmed cell death p 44.5 71 0.0024 27.6 7.8 65 390-455 10-76 (129)
254 3aji_A 26S proteasome non-ATPa 42.7 29 0.001 32.4 5.5 110 358-480 43-159 (231)
255 4gns_B Protein CSD3, chitin bi 42.4 3.4E+02 0.012 30.9 15.0 53 360-414 345-398 (754)
256 2d2s_A Exocyst complex compone 39.1 1.4E+02 0.0048 28.7 9.7 30 455-484 89-118 (235)
257 3utm_A Tankyrase-1; tankyrase, 38.5 2.1E+02 0.0073 28.0 11.7 212 195-481 25-301 (351)
258 3t8k_A Uncharacterized protein 38.0 51 0.0017 30.2 6.2 28 294-321 45-72 (186)
259 2ion_A PDCD4, programmed cell 37.4 63 0.0022 28.9 6.4 65 390-455 12-78 (152)
260 2etb_A Transient receptor pote 37.1 57 0.002 31.0 6.7 30 196-225 4-33 (256)
261 2pnn_A Transient receptor pote 37.0 37 0.0013 32.8 5.3 28 196-223 15-42 (273)
262 2rfa_A Transient receptor pote 36.8 1.3E+02 0.0043 27.8 9.0 118 358-484 78-221 (232)
263 3ljn_A Hypothetical protein; a 36.6 47 0.0016 33.7 6.3 231 195-482 21-266 (364)
264 4b4t_P 26S proteasome regulato 36.4 4E+02 0.014 28.0 15.0 192 205-450 30-246 (445)
265 3d9h_A CDNA FLJ77766, highly s 34.6 17 0.00058 35.9 2.4 213 192-481 13-243 (285)
266 3eu9_A Huntingtin-interacting 34.0 14 0.00048 34.7 1.5 112 358-481 79-198 (240)
267 3twr_A Tankyrase-2; ankyrin re 33.6 42 0.0014 29.4 4.7 112 358-480 11-128 (165)
268 1nzn_A CGI-135 protein, fissio 32.7 2.3E+02 0.008 24.3 9.0 84 401-486 15-103 (126)
269 2p58_C Putative type III secre 32.7 1.6E+02 0.0054 24.5 7.3 48 433-486 51-98 (116)
270 3hra_A Ankyrin repeat family p 32.3 67 0.0023 29.0 6.0 15 442-456 158-172 (201)
271 2d2s_A Exocyst complex compone 31.3 2E+02 0.0068 27.6 9.3 102 358-462 24-140 (235)
272 4b4t_R RPN7, 26S proteasome re 31.1 3.9E+02 0.013 27.8 12.6 102 358-461 137-247 (429)
273 2p58_C Putative type III secre 30.7 1.7E+02 0.0058 24.3 7.2 78 367-452 22-99 (116)
274 2nsz_A Programmed cell death p 30.6 1.5E+02 0.0051 25.5 7.5 70 358-432 13-84 (129)
275 4b93_B Ankyrin repeat domain-c 29.9 1.4E+02 0.0049 28.8 8.4 76 396-480 125-205 (269)
276 2uwj_G Type III export protein 29.2 1.6E+02 0.0054 24.5 6.7 48 433-486 50-97 (115)
277 3jxi_A Vanilloid receptor-rela 28.4 27 0.00093 33.4 2.6 119 358-481 8-161 (260)
278 3twr_A Tankyrase-2; ankyrin re 27.4 86 0.003 27.2 5.7 87 358-456 45-135 (165)
279 4b4t_R RPN7, 26S proteasome re 27.1 2.7E+02 0.0091 29.2 10.4 96 389-486 133-237 (429)
280 3eiq_C Programmed cell death p 26.7 1E+02 0.0036 31.7 6.8 69 389-458 219-289 (358)
281 3kea_A K1L; tropism, ANK repea 26.7 52 0.0018 32.2 4.4 112 358-482 65-183 (285)
282 2uwj_G Type III export protein 26.5 1.7E+02 0.0057 24.3 6.4 78 367-452 21-98 (115)
283 1zbp_A Hypothetical protein VP 26.5 1.5E+02 0.0051 29.2 7.5 116 360-486 5-129 (273)
284 3bbn_U Ribosomal protein S21; 26.0 19 0.00066 33.1 0.8 23 105-127 108-130 (190)
285 3f6q_A Integrin-linked protein 25.7 1E+02 0.0035 27.3 5.9 111 361-480 11-125 (179)
286 3ljn_A Hypothetical protein; a 25.6 92 0.0031 31.4 6.2 116 358-482 56-195 (364)
287 2ion_A PDCD4, programmed cell 25.0 1.3E+02 0.0043 26.9 6.2 70 358-432 15-86 (152)
288 4fhn_B Nucleoporin NUP120; pro 24.5 3.5E+02 0.012 32.4 12.0 113 360-475 850-989 (1139)
289 3aji_A 26S proteasome non-ATPa 23.4 1.1E+02 0.0038 28.2 5.9 113 358-480 9-126 (231)
290 3t8k_A Uncharacterized protein 23.3 3.6E+02 0.012 24.1 9.4 92 362-457 13-109 (186)
291 3v31_A Ankyrin repeat family A 22.9 1.9E+02 0.0064 24.9 7.1 151 282-485 4-160 (167)
292 2etb_A Transient receptor pote 22.9 46 0.0016 31.7 3.1 118 358-481 5-157 (256)
293 2fu4_A Ferric uptake regulatio 22.7 1.5E+02 0.005 22.8 5.6 59 446-505 6-66 (83)
294 1ycs_B 53BP2, P53BP2; ankyrin 22.3 42 0.0015 31.8 2.7 85 358-456 40-130 (239)
295 1wty_A Hypothetical protein TT 21.5 3.3E+02 0.011 22.8 7.9 75 368-449 4-79 (119)
296 3d9h_A CDNA FLJ77766, highly s 21.1 1.4E+02 0.0049 28.8 6.5 111 358-481 95-211 (285)
297 2fe3_A Peroxide operon regulat 20.8 2.4E+02 0.0083 24.5 7.2 60 445-505 10-70 (145)
298 3f6q_A Integrin-linked protein 20.8 2E+02 0.0068 25.2 6.9 87 358-456 42-132 (179)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.7e-68 Score=596.37 Aligned_cols=390 Identities=45% Similarity=0.773 Sum_probs=356.8
Q ss_pred ccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcc
Q 005628 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 267 ~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
+++.++ ++. |...++.+|++ ||+.|++++|.++|++|.+.|+.||.+||| .||.+|+.....
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn--~Li~~c~~~~~~------- 77 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHYN--VLLYVCSLAEAA------- 77 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHTTCCCC-------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhCCch-------
Confidence 455554 555 66779999999 999999999999999999999999999998 555555421110
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
...++.+.+++|.++|++|...|+.||.+|||+||++||+.|++++|+++|++|.+.|+.||.+|
T Consensus 78 ---------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 78 ---------------TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ---------------SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ---------------hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01123456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcC
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~ 504 (687)
||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++|++.+..|++.||++|..||.+
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999555555699999999999
Q ss_pred HHHHHhhcccchhhHHHHHhhhcCCcccccccCCCCccEEEeeeecCCCcccccccccccccCCHHHHHHHHHHHHHHHH
Q 005628 505 KEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI 584 (687)
Q Consensus 505 ~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~~~L~~~~l~~~e~~~l~~~i~~~~~ 584 (687)
......++..|+...+.+++...|+.|+...+.|...|.+..+.+...|.|.+|+..|.+++++++|++.|.+.|.+.++
T Consensus 223 ~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~ 302 (501)
T 4g26_A 223 EVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLAC 302 (501)
T ss_dssp HHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHhhcCCccEEEeccchhcccCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChHHH
Q 005628 585 KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664 (687)
Q Consensus 585 ~~~~~~~~~~F~~~l~~~~~yd~vIDGanvg~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~ 664 (687)
.++++++|+.|++|+++++|||+||||+|||||+|++|++.|++.|+..+.+..+++++||||||++|+.+..+..|+++
T Consensus 303 ~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~ 382 (501)
T 4g26_A 303 EREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNR 382 (501)
T ss_dssp HHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTSGGGSSHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889899999
Q ss_pred HHHHHHHhCCceeeCCCCCCCCC
Q 005628 665 ALIEKWKNADALYATPTGSNDDW 687 (687)
Q Consensus 665 ~l~~~w~~~~~ly~tp~~~nDDw 687 (687)
+++++|++++.||+||++|||||
T Consensus 383 ~~~~~~~~~~~~~~t~~~s~DD~ 405 (501)
T 4g26_A 383 ALLEKWKNAGALYATPPGSNDDW 405 (501)
T ss_dssp HHHHHHHHTTCEEEECTTCCHHH
T ss_pred HHHHHHHhcCeEEeCCCCCCchH
Confidence 99999999999999999999998
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.4e-34 Score=320.07 Aligned_cols=217 Identities=24% Similarity=0.281 Sum_probs=185.5
Q ss_pred CchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCccc
Q 005628 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246 (687)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~ 246 (687)
..+..+...+.+++ ....|+ ..++.+|++|||.|++++|+++|++|++.|++||.+|||+||++|++.
T Consensus 7 s~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------- 74 (501)
T 4g26_A 7 SPSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------- 74 (501)
T ss_dssp ---------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-------
T ss_pred chHHHHHHHHHHhc----ccCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-------
Confidence 34556666664332 223455 678999999999999999999999999999999999999999999932
Q ss_pred CCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhh
Q 005628 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ 326 (687)
Q Consensus 247 ~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~ 326 (687)
+... . .++.+.+++|.++|++|...|+.||.+||+
T Consensus 75 ---~~~~---------------------------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn--- 109 (501)
T 4g26_A 75 ---EAAT---------------------------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATFT--- 109 (501)
T ss_dssp ---CCCS---------------------------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHH---
T ss_pred ---Cchh---------------------------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHHH---
Confidence 2211 0 556778899999999999999888888885
Q ss_pred HhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005628 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (687)
Q Consensus 327 li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A 406 (687)
+ ||++|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|
T Consensus 110 -----------------------------~-lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 110 -----------------------------N-GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -----------------------------H-HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------H-HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 5 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
.++|++|.+.|+.||..||++||.+||+.|++++|.++|++|.+.|+.|+..||++|+..|+..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.2e-22 Score=231.11 Aligned_cols=297 Identities=8% Similarity=-0.086 Sum_probs=219.6
Q ss_pred chHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005628 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (687)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (687)
....++..+. ...+.++.++|.++|+.|.. ..|+..+|+.++.+|.+.|++++|+.+|+.+.. ..+|.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccch
Confidence 4455666666 67788999999999999953 345668999999999999999999999998864 37899
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccC--------------CCC-Cccchhccccccccc
Q 005628 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (687)
Q Consensus 227 ~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~--------------g~~-d~~tyn~Li~~~~~~ 291 (687)
.+++.++.+|+ +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH----
Confidence 99999999999 8999999999995 333221 233 57789999999
Q ss_pred cccccCCChhhHHHHHHHHHhcCCCCCcccc-c-h-----------------------------------hhHhhccc--
Q 005628 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-L-N-----------------------------------SQLLDGRS-- 332 (687)
Q Consensus 292 ~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty-~-~-----------------------------------~~li~g~~-- 332 (687)
|.+.|++++|..+|++|.+.+ |+..+. . . ..++.+|+
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999865 443221 1 0 01233333
Q ss_pred ---cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005628 333 ---NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (687)
Q Consensus 333 ---~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l 409 (687)
..|..+|..+... .+|..+|+. ++..|.+.|++++|.++|++|.+.+. .+..+|+.++.+|++.|++++|.++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455677777655 578899998 99999999999999999999987552 3556677777777777777777777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 410 ~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|++|... ...+..+|+.++..|++.|++++|.++|+++.+.. ..+..+|+.++.+|++.|++++|.++|++|...
T Consensus 362 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 362 SNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7776643 23455666777777777777777777777666532 224566777777777777777777777776655
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.2e-20 Score=214.61 Aligned_cols=314 Identities=11% Similarity=-0.068 Sum_probs=192.6
Q ss_pred chHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcC---------CCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005628 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA 217 (687)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g---------~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M 217 (687)
....++.... ...+.++.++|.++|+++.... ...+.+..++..+|+.++.+|.+.|++++|+++|++|
T Consensus 149 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 149 SSACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp CHHHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555544 6778899999999999642111 0011244567899999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcc----------------------------cCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 218 QREGIKLGQYHYNVLLYLCSSAA----------------------------VGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 218 ~~~Gi~pd~~tyn~Ll~~~~~~~----------------------------~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
.+.+.. +...+..+...+...+ .....+.+.|++++|..+|. ++
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~ 298 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SI 298 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TS
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hh
Confidence 976421 2333333322110000 00112447788888888884 44
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcc
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRK 344 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~ 344 (687)
... -.+..+|+.++.+ +.+.|++++|..+|++|.+.+. .+..+|. .++.++. ..|..++..+..
T Consensus 299 ~~~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDP-YNLDVYP--LHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp TTG--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCT-TCCTTHH--HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcC--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCc-ccHHHHH--HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 432 1267778888888 8888888888888888887652 2455555 4554444 334445555542
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
. .+.+..+|+. +...|++.|++++|.++|++|.+.. +.+..+|+.++.+|++.|++++|.++|++|.+.+ ..+..+
T Consensus 368 ~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 368 R-HPEKAVTWLA-VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp H-CTTSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred h-CcccHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 2 2334555555 6666666666666666666665532 2245566666666666666666666666665542 235566
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|+.++.+|++.|++++|.++|++|.+.. ..+..+|+.+...|.+.|++++|.++|++|.+.
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666666666666666666666665542 224566666666666666666666666666543
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=223.59 Aligned_cols=124 Identities=15% Similarity=-0.001 Sum_probs=115.0
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
-.+|||+ ||++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|++.|+.||++|||
T Consensus 126 ~~~Tyna-LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLA-FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568999 99999999999999999988864 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 427 PALSVFCNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 427 ~lI~~~~~~g~~-~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
+||++||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+-++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 999999999985 789999999999999999999999998877765333
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.9e-21 Score=224.47 Aligned_cols=153 Identities=10% Similarity=-0.086 Sum_probs=127.4
Q ss_pred ccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHH
Q 005628 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (687)
Q Consensus 278 ~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (687)
.+|||+||+| ||+.|++++|.++|++|.+. ..+|+.||++|||+
T Consensus 127 ~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m-----------------------------~~kG~~PdvvTYNt- 170 (1134)
T 3spa_A 127 QQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQ-----------------------------RQKRKLLTLDMYNA- 170 (1134)
T ss_dssp HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHS-----------------------------HHHHTTCCHHHHHH-
T ss_pred HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHH-----------------------------hhcCCCCCHhHHHH-
Confidence 4689999999 99999999999999998752 22344555555567
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~-~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
||++||+.|++++|.++|++|++.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+
T Consensus 171 LI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999999999999999999999999999999999999999985 789999999999999999999999998887765
Q ss_pred ChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcC
Q 005628 437 DVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAG 471 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd------~~ty~~Li~~~~~~g 471 (687)
-++...++ ..++.|+ +.|...|.+.|.+.+
T Consensus 251 vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 251 VLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHh-----CcccCCCCCCcccccchHHHHHHHccCC
Confidence 44443333 3355554 666677778887766
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=9.9e-13 Score=141.02 Aligned_cols=285 Identities=11% Similarity=-0.038 Sum_probs=198.9
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~ 237 (687)
...+.++.++|.+.|+.+.... | .+..+|..+..++.+.|++++|++.|+++... .|+.. .+..+-..|.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~--p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK--P-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC--c-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 4446677777777777775421 1 12346777777777788888888887777754 34443 3444444444
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..|+.++|...|. ++... .-.+..+|+.+... +.+.|++++|...|+++.+.. |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6788888888884 44332 22255668888777 888888888888888887753 4
Q ss_pred Ccc-ccchhhHhhccc-----cccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH
Q 005628 318 NGH-MKLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 318 d~~-ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (687)
+.. .|. .+-..+. +.|...+.... .+.|+ ..+|+. +...|.+.|++++|.+.|+++.+.. +.+..+|
T Consensus 201 ~~~~~~~--~lg~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 201 NFLDAYI--NLGNVLKEARIFDRAVAAYLRAL--SLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp TCHHHHH--HHHHHHHTTTCTTHHHHHHHHHH--HHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred CcHHHHH--HHHHHHHHcCCHHHHHHHHHHHH--hhCcCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 432 222 1111111 22222222222 23454 456666 8888899999999999999988754 2356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
..+...+.+.|++++|.+.|+++.+. .+.+..+|+.+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 89999999999999999999988876 34567888889999999999999999999887642 34577888899999999
Q ss_pred CChHHHHHHHHHHHhc
Q 005628 471 GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (687)
|++++|...|+++...
T Consensus 353 g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988875
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=1.4e-12 Score=139.77 Aligned_cols=308 Identities=12% Similarity=-0.025 Sum_probs=224.5
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
....++.++|...++..... .+.+..+|..+...|.+.|++++|++.|+++.... +.+..+|..+..++.
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-- 112 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV-- 112 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH--
Confidence 34667888888888877542 23355789999999999999999999999998642 234567888988888
Q ss_pred ccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (687)
+.|++++|...|. ++... .-.+...+..+-.. +...|++++|..+|+++.+. .|+.
T Consensus 113 --------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~ 168 (388)
T 1w3b_A 113 --------AAGDMEGAVQAYV-------SALQY-NPDLYCVRSDLGNL------LKALGRLEEAKACYLKAIET--QPNF 168 (388)
T ss_dssp --------HHSCSSHHHHHHH-------HHHHH-CTTCTHHHHHHHHH------HHTTSCHHHHHHHHHHHHHH--CTTC
T ss_pred --------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHccCHHHHHHHHHHHHHh--CCCC
Confidence 7888999999984 33332 11133346666666 77889999999999998876 3543
Q ss_pred -cccchhhHhhccc-----cccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005628 320 -HMKLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (687)
Q Consensus 320 -~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~ 392 (687)
.+|. .+...+. ..|...+..+... .|+ ...|.. +-..+...|++++|...|++..... +-+..+|..
T Consensus 169 ~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 242 (388)
T 1w3b_A 169 AVAWS--NLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYIN-LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp HHHHH--HHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHH
Confidence 3444 3333333 3444455555543 344 334555 7788888899999999998887643 235788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+. .+.+..+|+.+...+.+.|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999988753 124568899999999999999999999999876 35578899999999999999
Q ss_pred hHHHHHHHHHHHhccCCCC-hhHHHH-HHHHHcCHHHHHhh
Q 005628 473 GDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 473 ~~~A~~ll~~M~~~~~g~~-p~t~~~-I~~~~~~~~~~~a~ 511 (687)
+++|..+++++... .+. +.++.. ...++..+...+|.
T Consensus 321 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 321 IEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998876 322 224433 55566665544433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=1e-11 Score=135.41 Aligned_cols=292 Identities=9% Similarity=-0.074 Sum_probs=200.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.++|+.+... .+.+...|..+..++.+.|++++|+..|+++.+.+ +.+...|..+...|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 566789999999999999653 12346899999999999999999999999999864 345788999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCc---cchhccccc------cccccccccCCChhhHHHHHHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~---~tyn~Li~~------~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+.|++++|...|. ++... .-.+. ..|..++.. ......+.+.|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999999999995 44432 22233 445444221 0011227789999999999999
Q ss_pred HHhcCCCCC-ccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 310 KENLGQFSN-GHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 310 M~~~g~~Pd-~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+.+.. |+ ...+. .+...+. ..|...+..+... .+.+..+|+. +...|.+.|++++|.+.|+++....
T Consensus 169 ~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 169 ILEVC--VWDAELRE--LRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHC--TTCHHHHH--HHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC--CCChHHHH--HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 98753 33 33333 3333332 3444455555432 1224455666 7777777788888888887776532
Q ss_pred CCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHhCCChHHHHHHHH
Q 005628 384 PMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 384 ~pd~~tyn~L------------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
+.+...+..+ ...|.+.|++++|..+|+.+... .|+ ...|..+...+.+.|++++|.+.++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1233444444 66777778888888887777664 344 3467777777777788888887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 776542 235677777777777788888888877777765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.38 E-value=4.3e-11 Score=130.36 Aligned_cols=211 Identities=11% Similarity=0.040 Sum_probs=130.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccc
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~e 268 (687)
.+...|..+...+.+.|++++|+.+|+++... .+.+..+|..+..+|. ..|+.++|...|. +
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~ 85 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFL----------AMGKSKAALPDLT-------K 85 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------H
Confidence 34578999999999999999999999999875 3457889999999999 8899999999995 4
Q ss_pred ccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc----cccchhhHhhccccccCCCcchhcc
Q 005628 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG----HMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 269 m~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~----~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
+... +-.+...|..+... +.+.|++++|...|+++.+.. |+. ..+. .+...+.
T Consensus 86 al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~------------ 142 (450)
T 2y4t_A 86 VIQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQS--QLIKSDE------------ 142 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHH--HHHHHHH------------
T ss_pred HHhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHH--HHHHHHH------------
Confidence 4443 22256668888888 999999999999999998753 443 2222 2211100
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
...+.. +-..|.+.|++++|.++|+++.... +.+..++..+...|.+.|++++|..+|+++.... ..+..+
T Consensus 143 ------~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 143 ------MQRLRS-QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp ------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred ------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 000001 1223444455555555555544321 1234445555555555555555555555444331 123344
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
|..+...|...|+.++|.+.|+.+.
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555544
No 11
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.30 E-value=1.9e-12 Score=139.65 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=93.1
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~ 241 (687)
+.++.++|.+.++.+. . | .+|..|..++.+.|++++|++.|.+. +|..+|..++.+|.
T Consensus 15 ~~~~ld~A~~fae~~~------~----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae---- 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------E----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN---- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------C----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH----
Confidence 6778999999999982 2 2 59999999999999999999999753 68889999999998
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
..|++++|...+ +|..+ ..++..+.+.|+.+ |.+.|+++++.++++ .|+..+
T Consensus 73 ------~~g~~EeAi~yl--------~~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn~~a 124 (449)
T 1b89_A 73 ------TSGNWEELVKYL--------QMARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNAH 124 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTT-------CC----
T ss_pred ------hCCCHHHHHHHH--------HHHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCcHHH
Confidence 889999999977 34443 34467789999999 999999999987774 244444
Q ss_pred cchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005628 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (687)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g 401 (687)
| +. +-+.|...|.+++|..+|..+ ..|..|+.++++.|
T Consensus 125 ~--------------------------------~~-IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 125 I--------------------------------QQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 162 (449)
T ss_dssp ---------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred H--------------------------------HH-HHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence 4 45 778899999999999999987 36999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
++++|.+.+..+ -+..+|..++.+|+..|+++.|...... +..+..-...++..|.+.|++++|..+|+
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999987 2789999999999999999999655544 33344446679999999999999999998
Q ss_pred HHHhc
Q 005628 482 KLRTS 486 (687)
Q Consensus 482 ~M~~~ 486 (687)
.-...
T Consensus 232 ~aL~l 236 (449)
T 1b89_A 232 AALGL 236 (449)
T ss_dssp HHTTS
T ss_pred HHhCC
Confidence 76654
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.25 E-value=7.9e-10 Score=114.18 Aligned_cols=257 Identities=9% Similarity=-0.064 Sum_probs=195.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.++|+.+.... +.+...|..+...+.+.|++++|+..|+++.... +.+..++..+...|.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 100 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT- 100 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH-
Confidence 3457789999999999986542 1245788899999999999999999999998763 346788888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcc--------------cc-ccccccccccCCChhhH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDL 303 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~L--------------i~-~~~~~~~~~~~g~~~~A 303 (687)
..|+.++|...+. +.... .-.+...+..+ -. . +...|++++|
T Consensus 101 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 157 (327)
T 3cv0_A 101 ---------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYREC 157 (327)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHH
Confidence 7899999999995 33322 11122223333 11 2 6678889999
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
...++++.+.. |+ +...+.. +...|.+.|++++|.+.|+++....
T Consensus 158 ~~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~- 202 (327)
T 3cv0_A 158 RTLLHAALEMN--PN-------------------------------DAQLHAS-LGVLYNLSNNYDSAAANLRRAVELR- 202 (327)
T ss_dssp HHHHHHHHHHS--TT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhC--CC-------------------------------CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 99998887653 22 2223344 7788889999999999999988753
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--------
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-------- 455 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-------- 455 (687)
+.+..+|..+...+...|++++|...|++..+.. +.+..+|..+...|.+.|+.++|.+.|+...+..-..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3467889999999999999999999999987753 2356788889999999999999999999887653221
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 456 ---EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 456 ---d~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
+...|..+..+|.+.|+.++|..++++.
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778899999999999999999887643
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=6.6e-10 Score=122.71 Aligned_cols=294 Identities=11% Similarity=-0.039 Sum_probs=206.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.+.|+.+.... |+...|..+..+|.+.|++++|+..|+++.+.. +-+...|..+..+|.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 84 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE- 84 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-
Confidence 4457789999999999997642 566899999999999999999999999999764 345678999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcccc--------------------------------
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS-------------------------------- 286 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~-------------------------------- 286 (687)
+.|+.++|...|. ++..... .+......++.
T Consensus 85 ---------~~g~~~~A~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 85 ---------GLGKFADAMFDLS-------VLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred ---------HHhhHHHHHHHHH-------HHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 8899999999985 3322101 00000000000
Q ss_pred ---------------------------------------------ccccccccccCCChhhHHHHHHHHHh-----cCCC
Q 005628 287 ---------------------------------------------PMIDKLESNSSYRFDDLDSTFNEKEN-----LGQF 316 (687)
Q Consensus 287 ---------------------------------------------~~~~~~~~~~~g~~~~A~~lf~eM~~-----~g~~ 316 (687)
+ .....+.+.|++++|..+|+++.+ ..-.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG-LSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH-HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 0 000002246778888888887776 3223
Q ss_pred CCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005628 317 SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (687)
Q Consensus 317 Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~ 396 (687)
|+..... +.+...|.. +...|...|++++|.++|+++.... |+..+|..+...
T Consensus 227 ~~~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 227 NEDEKLK------------------------EKLAISLEH-TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTCHHHH------------------------HHHHHHHHH-HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred ccccccC------------------------hHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 3332110 012233444 6778888899999999999888764 337888888899
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
|...|++++|...++.+.... ..+...|..+...|...|++++|...|+...+..- .+...|..+...|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999887652 34567888888899999999999999998887542 2567888888888999999999
Q ss_pred HHHHHHHHhccCCC-ChhHHHH-HHHHHcCHHHHHhh
Q 005628 477 YYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 477 ~~ll~~M~~~~~g~-~p~t~~~-I~~~~~~~~~~~a~ 511 (687)
..+|+++... .+ .+..+.. ...+...+...+|.
T Consensus 358 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 358 ETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999988876 32 2334333 44455555444443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.6e-09 Score=111.96 Aligned_cols=260 Identities=9% Similarity=-0.070 Sum_probs=206.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.++|+.+..... .+...+..++..+.+.|++++|+.+|+++.... +-+...|..+-..+.
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 101 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL- 101 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-
Confidence 34466999999999999865421 122466677788899999999999999998753 235667777777777
Q ss_pred cccCCcccCCCC-chhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 239 ~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..| +.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+.. |
T Consensus 102 ---------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~ 156 (330)
T 3hym_B 102 ---------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--K 156 (330)
T ss_dssp ---------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--T
T ss_pred ---------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--c
Confidence 677 8999999995 33332 22255568888888 999999999999999887753 2
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~ 397 (687)
+. ...+.. +...|...|++++|.+.|++..+.. +.+..+|..+...+
T Consensus 157 ~~-------------------------------~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 157 GC-------------------------------HLPMLY-IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp TC-------------------------------SHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred cc-------------------------------HHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 21 112233 6678889999999999999998764 34678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcC--------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005628 398 MSMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g--------~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (687)
...|++++|...+++..... ...+..+|..+...|.+.|+.++|.+.|+...+.. ..+...|..+-..|.+
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 99999999999999987641 13446789999999999999999999999998764 3367889999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 005628 470 AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (687)
.|++++|...|++....
T Consensus 283 ~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 283 MGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTCHHHHHHHHHTTTTT
T ss_pred hccHHHHHHHHHHHHcc
Confidence 99999999999988766
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.22 E-value=9e-10 Score=116.27 Aligned_cols=257 Identities=10% Similarity=-0.077 Sum_probs=179.8
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.+.|+.+.+.. +.+...|..+...+.+.|++++|+..|+++.... +.+..++..+...|.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4457889999999999996542 2245789999999999999999999999998764 447888999999998
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhc---------------cccccccccccccCCChhhH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~---------------Li~~~~~~~~~~~~g~~~~A 303 (687)
..|+.++|...|. ++... .-.+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 7899999999995 33332 1112222221 1222 3367777888
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
...|+++.+.. |+.. +..+|.. +...|.+.|++++|.+.|+++....
T Consensus 201 ~~~~~~a~~~~--p~~~-----------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 201 KELFLAAVRLD--PTSI-----------------------------DPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp HHHHHHHHHHS--TTSC-----------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhC--cCcc-----------------------------cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88777776542 2210 1223334 6677777888888888888777642
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---------
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--------- 454 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~--------- 454 (687)
+.+..+|..+...+.+.|++++|...|++..... +.+...|..+...|.+.|+.++|...|+...+..-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 2356778888888888888888888888776642 234567777777888888888888888777653211
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 455 -PEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 455 -pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
....+|..|..+|.+.|+.++|..++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 125777888888888888887777655
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.22 E-value=3.2e-10 Score=120.12 Aligned_cols=245 Identities=9% Similarity=-0.050 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
...|..+...+.+.|++++|+.+|+++.... +.+..+|..+-..|. ..|++++|...|. +..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al 126 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RCL 126 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHH
Confidence 3568888899999999999999999999764 447888999999999 8899999999995 433
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
.. .-.+...|..+... +...|++++|...|+++.+.. |+..... .... ..
T Consensus 127 ~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~--~~~~-------------------~~ 176 (365)
T 4eqf_A 127 EL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLV--KNKK-------------------GS 176 (365)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------
T ss_pred hc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHH--hhhc-------------------cc
Confidence 32 22255668888888 999999999999999988753 3322111 0000 00
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
...++. +...|.+.|++++|.++|+++...... ++..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+.
T Consensus 177 ~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 254 (365)
T 4eqf_A 177 PGLTRR-MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLG 254 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 112223 567888999999999999999986432 268899999999999999999999999988763 34578899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|.+.|++++|.+.|+.+.+.. +.+..+|..+...|.+.|++++|...|++....
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998763 235888999999999999999999999998765
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.21 E-value=5.5e-10 Score=118.29 Aligned_cols=258 Identities=10% Similarity=-0.063 Sum_probs=197.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.++|+.+.... +.+..+|..+...+.+.|++++|+..|+++.... +.+..+|..+...|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4557889999999999997642 2245899999999999999999999999998763 345888999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCc----------cchhccccccccccccccCCChhhHHHHHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~----------~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
..|+.++|...|. +.... .-.+. ..++.+... +.+.|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 8899999999995 33221 10111 123334566 889999999999999
Q ss_pred HHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHH
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (687)
++.+.. |+. ++..+|.. +...|.+.|++++|.+.|++..+.. +.+..
T Consensus 202 ~al~~~--p~~-----------------------------~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 248 (365)
T 4eqf_A 202 EAAHQN--GDM-----------------------------IDPDLQTG-LGVLFHLSGEFNRAIDAFNAALTVR-PEDYS 248 (365)
T ss_dssp HHHHHS--CSS-----------------------------CCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHhC--cCc-----------------------------cCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 988753 321 12334445 7788999999999999999998753 34688
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-----------YPEE 457 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-----------~pd~ 457 (687)
+|+.+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|+.++|.+.|+.+.+..- ..+.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 99999999999999999999999988762 23477899999999999999999999999876421 1136
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
..|..|-.++...|+.+.+..+..+
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7899999999999999988776553
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.21 E-value=1.2e-09 Score=115.15 Aligned_cols=274 Identities=9% Similarity=-0.027 Sum_probs=196.2
Q ss_pred cCCCchhh-hHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005628 164 TNDSGQYK-VRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (687)
Q Consensus 164 ~~~~~A~~-v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~ 242 (687)
++.++|.+ .|+..... .++. ...+...|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+-..|.
T Consensus 39 ~~~~~a~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----- 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQF--EEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----- 109 (368)
T ss_dssp -------CHHHHCCCCC--CSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhhhHHHhc--CCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 46667777 66654321 1211 11123567788889999999999999999999763 446778888888888
Q ss_pred CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 243 ~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
..|+.++|...|. +.... .-.+...|..+... +...|++++|...|+++.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~al~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 168 (368)
T 1fch_A 110 -----ENEQELLAISALR-------RCLEL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHL 168 (368)
T ss_dssp -----HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGG
T ss_pred -----HCcCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHH
Confidence 8899999999995 33332 22255668888888 999999999999999998754 333222
Q ss_pred chhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC
Q 005628 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMG 401 (687)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g 401 (687)
. ... +... ....+.. .+. .+..+...|++++|.++|+++...... ++..+|..+...|.+.|
T Consensus 169 ~--~~~-~~~~-----------~~~~~~~-~~~--~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 169 V--TPA-EEGA-----------GGAGLGP-SKR--ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp C--C----------------------------C--TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred H--HHH-HHHh-----------hhhcccH-HHH--HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 1 000 0000 0000000 000 223334889999999999999875432 25889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
++++|...|++..... +.+..+|..+...|.+.|+.++|.+.|+.+.+.. +.+...|..+...|.+.|++++|...|+
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988762 2356789999999999999999999999998753 3467899999999999999999999999
Q ss_pred HHHhc
Q 005628 482 KLRTS 486 (687)
Q Consensus 482 ~M~~~ 486 (687)
+....
T Consensus 310 ~al~~ 314 (368)
T 1fch_A 310 EALNM 314 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.15 E-value=5.4e-09 Score=107.81 Aligned_cols=246 Identities=8% Similarity=-0.083 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+...+. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455667778899999999999999998763 346778888888888 7899999999995 3333
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCCh
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (687)
. .-.+...|..+... +...|++++|...|++..+.. |+..... ..+. ...|+.
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--~~~~----------------~~~~~~ 136 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQLG--SVNL----------------QADVDI 136 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHHH--HHHh----------------HHHHHH
Confidence 2 22245567777777 999999999999999988753 3322221 0000 000111
Q ss_pred hhhHHHH-HH-HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 352 QDADEIR-LS-EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 352 ~tyn~~l-I~-~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
..... + .. .+...|++++|.++|+++.+.. +.+..++..+...|.+.|++++|...++++.... ..+..+|..+.
T Consensus 137 ~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 137 DDLNV-QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHH-HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 11111 2 12 3778899999999999998764 3478899999999999999999999999988763 23567899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...|+.++|.+.|+++.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988753 336788999999999999999999999998876
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.14 E-value=3.7e-11 Score=129.66 Aligned_cols=218 Identities=13% Similarity=0.085 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~ 272 (687)
.-+.||. +.|++++|.++++++ +++.+|..|..++. +.|++++|.+.|.
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~------~~~~vWs~La~A~l----------~~g~~~eAIdsfi------------ 56 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL----------QKGMVKEAIDSYI------------ 56 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhC------CChHHHHHHHHHHH----------HcCCHHHHHHHHH------------
Confidence 3445554 568899999999998 33459999999999 8999999999994
Q ss_pred CCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChh
Q 005628 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (687)
Q Consensus 273 ~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~ 352 (687)
..+|..+|..++.+ +...|++++|...++...+. .|+..+.+
T Consensus 57 -ka~D~~~y~~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~~----------------------------- 98 (449)
T 1b89_A 57 -KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKK--ARESYVET----------------------------- 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhHH-----------------------------
Confidence 33466689999999 99999999999966654442 33333333
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
. |+.+|.+.|+++++.++++ .|+..+|+.+-+.|...|++++|..+|..+ ..|..|..++
T Consensus 99 ---~-Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 99 ---E-LIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp --------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred ---H-HHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 4 8999999999999998885 388889999999999999999999999976 4899999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCHHHHHh
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEAARL 510 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~~~~~a 510 (687)
++.|++++|.+.+..+ -++.+|..++.+|+..|+++.|...... ....|+ ...++.-+-+.|...++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 9999999999999998 3899999999999999999999655443 235566 33445555555554444
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.4e-09 Score=116.09 Aligned_cols=263 Identities=10% Similarity=0.004 Sum_probs=208.6
Q ss_pred hhcCCCchhhhHHHhhh-----cCCCCCCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005628 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~-----~g~~~~~g--~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~ 234 (687)
+.++.++|.++|+.+.. ....|+.. .+.+...|..+...+.+.|++++|+.+|+++.... |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 36889999999999866 21122211 02345788899999999999999999999999765 44888888888
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
.|. ..|+.++|...+. +.... .-.+...|..+... +...|++++|...|++..+..
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 8899999999995 43332 22255568888888 999999999999999887653
Q ss_pred CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
|+. ...+.. +...|.+.|++++|.++|+++.+.. +.+..+|..+.
T Consensus 335 --~~~-------------------------------~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 335 --PEN-------------------------------IFPYIQ-LACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp --SSC-------------------------------SHHHHH-HHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred --hhh-------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 221 123334 7788899999999999999998753 23567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC-CCCC----cchHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g-~~Pd----~~ty~~lI~~~~~---~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
..|.+.|++++|...++.+.... -.|+ ...|..+...+.. .|++++|.+.|+.+.+.. ..+...|..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 99999999999999999987642 1122 3389999999999 999999999999998763 3367888999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|.+.|++++|...|++....
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999987
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.13 E-value=1.7e-09 Score=111.91 Aligned_cols=125 Identities=17% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty---n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~ 434 (687)
+...|.+.|++++|.+.|+++.+.. |+...+ .+.+..+...|++++|..+|+++.+. .+.+...|+.+-.++.+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 5556666666666666666666543 332211 12223333346666666666666655 33455566666666666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~-A~~ll~~M~~~ 486 (687)
.|++++|.+.|++..+.. +-+..++..++..+...|+.++ +.++++++...
T Consensus 213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 666666666666665542 2245566666666666666654 45666666654
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.11 E-value=2.5e-09 Score=110.73 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=177.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCC
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~Gi~pd~--~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~ 275 (687)
|+-.--.|++..|+..++... ...|+. ...-.+..+|. ..|+.+.|...+. .. .-
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~ 62 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SA 62 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SC
T ss_pred HHHHHHHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CC
Confidence 344456789999998887653 234443 24455667777 6788888888774 10 11
Q ss_pred CCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhH
Q 005628 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (687)
Q Consensus 276 ~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn 355 (687)
++..++..+... ++..++.++|.+.++++...++.|+...+.
T Consensus 63 ~~~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~-------------------------------- 104 (291)
T 3mkr_A 63 PELQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFL-------------------------------- 104 (291)
T ss_dssp HHHHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--------------------------------
T ss_pred hhHHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHH--------------------------------
Confidence 145567777777 899999999999999999887777765442
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH---HHHHHHH
Q 005628 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSVF 432 (687)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty---~~lI~~~ 432 (687)
..+-..|...|++++|.+.|++ +.+...+..+...|.+.|++++|...|+.+.+.. |+...+ ...+..+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHH
Confidence 2244778899999999999997 5788899999999999999999999999998773 665322 2233444
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-ChhHH-HHHHHHHcCHH
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWFNSKE 506 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~-~~I~~~~~~~~ 506 (687)
...|++++|..+|+++.+. .+.+...|+.+-.++.+.|++++|...|++.... .+ .|+++ +.+..+...|.
T Consensus 177 ~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 5569999999999999987 4568899999999999999999999999998876 32 34444 44444444443
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.10 E-value=4.9e-09 Score=108.30 Aligned_cols=234 Identities=11% Similarity=-0.109 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..+..+...+...|++++|+++|+++.... +.+...+..+...+. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 566778888889999999999999998753 234445566667777 6789999999995 4433
Q ss_pred cCCCCCccchhccccccccccccccCC-ChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g-~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
. .-.+...|..+-.. +...| ++++|...|++..+.. |+.
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------- 124 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KTY------------------------------- 124 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TTC-------------------------------
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--Ccc-------------------------------
Confidence 2 22255567777777 88889 9999999999887642 221
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
...|.. +...|...|++++|.+.|++...... .+...+..+...|...|++++|...+++..... +.+...|..+..
T Consensus 125 ~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 201 (330)
T 3hym_B 125 GPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV 201 (330)
T ss_dssp THHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 223334 77889999999999999999987642 245677779999999999999999999988753 345688999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~g--------v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+...|++++|...+++..+.. ...+...|..+...|.+.|++++|...|++....
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999987642 1344679999999999999999999999999887
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.09 E-value=3e-08 Score=103.30 Aligned_cols=257 Identities=9% Similarity=0.001 Sum_probs=170.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.+.|+...... +.+...|..+-..+.+.|++++|+..|+++.+.. +-+...|..+-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 4457789999999999986542 1235789999999999999999999999998763 236678888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCC---CCccchhcc------------ccccccccccccCCChhhH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~---~d~~tyn~L------------i~~~~~~~~~~~~g~~~~A 303 (687)
..|+.++|...|. +.... .- .+...|..+ ... +...|++++|
T Consensus 83 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A 139 (359)
T 3ieg_A 83 ---------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAA 139 (359)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred ---------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHH
Confidence 7899999999995 33332 11 122223333 244 7889999999
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
..+|+++.+.. |+. ...+.. +...|...|++++|.+.|++.....
T Consensus 140 ~~~~~~~~~~~--~~~-------------------------------~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 140 ITFLDKILEVC--VWD-------------------------------AELREL-RAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHC--TTC-------------------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhC--CCc-------------------------------hHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99999987653 222 112223 5566666777777777777766542
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHH------------HHHHHHHhCCChHHHHHHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYG------------PALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~------------~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+.+..+|..+...+...|++++|...|+...+.. |+.. .+. .+...+.+.|+.++|.+.++.+.+
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456667777777777777777777777666542 3221 121 124446667777777777777665
Q ss_pred CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEE-----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~-----~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. |+. ..|..+-..|.+.|++++|...+++....
T Consensus 263 ~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 263 TE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 43 222 12334556666777777777777776665
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.5e-08 Score=100.66 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-..|. ..|+.++|...|. +...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 578888899999999999999999999887 78889999999999 7899999999995 2222
Q ss_pred c-CCCC-C----ccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc
Q 005628 272 S-RDMD-N----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (687)
Q Consensus 272 ~-~g~~-d----~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (687)
. .... + ...|..+-.. +.+.|++++|...|++..... |+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~~-------------------------- 112 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RTA-------------------------- 112 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CCH--------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--chh--------------------------
Confidence 1 0110 1 3457777777 999999999999999887642 221
Q ss_pred CCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
..+.+.|++++|.+.|+++.... +.+...|..+...+...|++++|...|++..... ..+...|
T Consensus 113 --------------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 113 --------------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 23456788999999999998753 2345678899999999999999999999988763 2356789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...|.+.|++++|.+.|+...+.. +.+...|..+-..|.+.|++++|...|++....
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 335788999999999999999999999988766
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.96 E-value=1.2e-07 Score=94.23 Aligned_cols=201 Identities=9% Similarity=-0.027 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
...|..+...+...|++++|+++|+++.... +.+...|..+...|. ..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~-------------------- 85 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEM-------------------- 85 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTT--------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcC--------------------
Confidence 3677888888999999999999999988753 234555655555555 344
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
++++|...|++..+.. |+ +
T Consensus 86 ----------------------------~~~~A~~~~~~a~~~~--~~-------------------------------~ 104 (252)
T 2ho1_A 86 ----------------------------EPKLADEEYRKALASD--SR-------------------------------N 104 (252)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHC--TT-------------------------------C
T ss_pred ----------------------------CHHHHHHHHHHHHHHC--cC-------------------------------c
Confidence 4445555554444331 11 1
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
...|.. +...|...|++++|.++|+++...+..| +...|..+...+.+.|++++|...|++..... ..+...|..+.
T Consensus 105 ~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNN-YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 123334 6677888999999999999998744445 46778888999999999999999999988763 23567888899
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|...|+.++|..+++.+.+.. ..+...+..+...+.+.|+.++|..+++++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999987753 356778888999999999999999999999887
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.96 E-value=2.3e-07 Score=89.84 Aligned_cols=202 Identities=9% Similarity=-0.018 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
...|..+...+.+.|++++|+++|+++.... +.+...|..+...|. ..|+.++|...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~------------ 64 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQES------------ 64 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHH------------
Confidence 4678888999999999999999999998753 234566666655555 44445555444
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
|++..+.. |+ +
T Consensus 65 ------------------------------------~~~a~~~~--~~-------------------------------~ 75 (225)
T 2vq2_A 65 ------------------------------------FRQALSIK--PD-------------------------------S 75 (225)
T ss_dssp ------------------------------------HHHHHHHC--TT-------------------------------C
T ss_pred ------------------------------------HHHHHHhC--CC-------------------------------C
Confidence 44443321 11 1
Q ss_pred hhhhHHHHHHHHHhh-ccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 351 NQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~-g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
..++.. +...|... |++++|.+.|+++.+.+..|+ ...|..+...+...|++++|...|+++.+.. ..+...+..+
T Consensus 76 ~~~~~~-l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 153 (225)
T 2vq2_A 76 AEINNN-YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKEL 153 (225)
T ss_dssp HHHHHH-HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHH-HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHH
Confidence 223334 66778888 999999999999887433343 6778888999999999999999999887753 2346778888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...+.+.|+.++|.++++.+.+..-..+...+..+...+...|+.++|..+++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8899999999999999999887543257777888888889999999999999998765
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.95 E-value=2.2e-07 Score=96.66 Aligned_cols=257 Identities=7% Similarity=-0.086 Sum_probs=196.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH--
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL----GQYHYNVL-- 232 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p----d~~tyn~L-- 232 (687)
.....++.++|.+.|+...+.. | -+...|..+-..+.+.|++++|+..|+++.+. .| +...+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALK--M-----DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--C-----CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH
Confidence 4457789999999999986542 1 13478999999999999999999999999864 45 33444443
Q ss_pred ----------HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhh
Q 005628 233 ----------LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (687)
Q Consensus 233 ----------l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~ 302 (687)
...+. ..|+.++|...|. +.... .-.+...|..+-.. +...|++++
T Consensus 117 ~~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~ 172 (359)
T 3ieg_A 117 ADEMQRLRSQALDAF----------DGADYTAAITFLD-------KILEV-CVWDAELRELRAEC------FIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHHHh-CCCchHHHHHHHHH------HHHCCCHHH
Confidence 24455 7899999999995 43332 22245557777777 899999999
Q ss_pred HHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC
Q 005628 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (687)
Q Consensus 303 A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (687)
|...|++..+.. |+ +...|.. +...|...|++++|.+.|++..+..
T Consensus 173 A~~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 173 AISDLKAASKLK--SD-------------------------------NTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTC--SC-------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC--CC-------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999887652 22 1223344 7788899999999999999998753
Q ss_pred CCCCHHHHHH------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHHhCCChHHHHHHH
Q 005628 383 VPMNEASLTA------------VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----SYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 383 i~pd~~tyn~------------LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-----ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
+.+...+.. +...+.+.|++++|...++...... |+.. .|..+-..+.+.|+.++|.+.+
T Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 219 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 223333332 3566889999999999999988753 4432 3555678899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+...+.. +.+...|..+-..|.+.|++++|...|++..+.
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9998863 337889999999999999999999999999887
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.94 E-value=1.4e-07 Score=104.80 Aligned_cols=292 Identities=9% Similarity=-0.082 Sum_probs=193.7
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.+.|+...... +.+...|..+..+|.+.|++++|++.|+++.... +.+..+|..+...+.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 4557899999999999997642 2245899999999999999999999999998764 346778888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc---------------------------------------
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG--------------------------------------- 279 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~--------------------------------------- 279 (687)
..|+.++|...|... ....+..+..
T Consensus 105 ---------~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLSVL-------SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp ---------HHTCHHHHHHHHHHH-------C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred ---------HcCCHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 788999999888411 1100000000
Q ss_pred -----------------------chhcccccccccccccc--------CCChhhHHHHHHHHHhcCCCCCccc-cchhhH
Q 005628 280 -----------------------QLDYGSSPMIDKLESNS--------SYRFDDLDSTFNEKENLGQFSNGHM-KLNSQL 327 (687)
Q Consensus 280 -----------------------tyn~Li~~~~~~~~~~~--------~g~~~~A~~lf~eM~~~g~~Pd~~t-y~~~~l 327 (687)
.+..+..+ ....+.. .|++++|..+|+++.+.. |+... +. .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~--~~ 242 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--LQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRE--NA 242 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH--HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHH--HH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhH--HH
Confidence 00000000 0000000 125566666666665432 22111 00 00
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~ 407 (687)
..+|.. +-..+...|++++|.+.|++.... .|+..+|..+...+...|++++|.
T Consensus 243 -----------------------~~~~~~-~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 243 -----------------------ALALCY-TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp -----------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHH
T ss_pred -----------------------HHHHHH-HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHH
Confidence 112223 446677888999999999998875 466788888888899999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 005628 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (687)
Q Consensus 408 ~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~ 487 (687)
..|+...... +.+..+|..+...+...|++++|.+.|+...+.. .-+...|..+...|...|++++|..+|++....
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 373 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK- 373 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999887653 2356778888889999999999999999888754 224577888889999999999999999988877
Q ss_pred CCCC-hhHHHH-HHHHHcCHHHHHhh
Q 005628 488 RKVS-PSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 488 ~g~~-p~t~~~-I~~~~~~~~~~~a~ 511 (687)
.+. +..+.. -..+...+...+|.
T Consensus 374 -~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 374 -FPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 332 224333 34444444444433
No 31
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.87 E-value=8.6e-08 Score=106.48 Aligned_cols=256 Identities=11% Similarity=0.020 Sum_probs=197.1
Q ss_pred cCCCchhhhHHHhhhcCCCCCCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~g~~P~-----~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
++..+|.++|+.+.+.. |+ .|+ ..+|..+-..+...|++++|+..|+++... .|+...|..+-..|.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 47788999999985432 11 111 235777778889999999999999999975 466777877777777
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+.. |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 33332 22255568888888 999999999999999887753 22
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
. ...|.. +...|.+.|++++|.++|+++.+.. +.+...|..+...+.
T Consensus 343 ~-------------------------------~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 N-------------------------------VYPYIQ-LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp C-------------------------------SHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred C-------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1 123334 7788899999999999999998764 345678999999999
Q ss_pred HcCChHHHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhC----------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~~~----------g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
..|++++|...|++..... ..-....+..+-..+.+. |++++|...|+...+.. +.+...|..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 9999999999999987542 111122234445667777 99999999999998763 3467889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|.+.|++++|...|++....
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999887
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.82 E-value=4e-08 Score=98.76 Aligned_cols=222 Identities=10% Similarity=-0.091 Sum_probs=164.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc
Q 005628 203 KRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~---pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
..|++++|+..|+++.+.... .+..+|..+-..|. ..|+.++|...|. +.... .-.+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~~ 78 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMPE 78 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcHH
Confidence 347888999999988875321 13566777777777 7888999988884 33332 222455
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|..+-.. +...|++++|...|++..+.. |+ +...|.. +.
T Consensus 79 ~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~-la 118 (275)
T 1xnf_A 79 VFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PT-------------------------------YNYAHLN-RG 118 (275)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CTHHHHH-HH
T ss_pred HHHHHHHH------HHHccCHHHHHHHHHHHHhcC--cc-------------------------------ccHHHHH-HH
Confidence 67777777 889999999999999887642 22 1223344 77
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..|.+.|++++|.+.|+++.+. .|+...+...+..+...|++++|...++..... ..++...| .++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHH
Confidence 8899999999999999999874 355555556666667789999999999877765 23444444 4777888889999
Q ss_pred HHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~p---d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.++...+..... +...|..+-..|.+.|++++|...|++....
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999886542211 1578889999999999999999999999877
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.73 E-value=1.9e-07 Score=91.86 Aligned_cols=201 Identities=11% Similarity=0.031 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHH
Q 005628 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (687)
Q Consensus 225 d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~ 304 (687)
...+|..+-..+. ..|++++|...|. +.... .-.+...|..+... +...|++++|.
T Consensus 22 ~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~~~~~~A~ 77 (243)
T 2q7f_A 22 ASMTGGQQMGRGS----------EFGDYEKAAEAFT-------KAIEE-NKEDAIPYINFANL------LSSVNELERAL 77 (243)
T ss_dssp ------------------------------CCTTHH-------HHHTT-CTTCHHHHHHHHHH------HHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH----------HhhCHHHHHHHHH-------HHHHh-CcccHHHHHHHHHH------HHHcCCHHHHH
Confidence 3444555555555 7889999999985 44332 22255567777777 88999999999
Q ss_pred HHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC
Q 005628 305 STFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (687)
Q Consensus 305 ~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (687)
..|++..+.. |+ +...|.. +...|...|++++|.++|+++.+.. +
T Consensus 78 ~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~ 122 (243)
T 2q7f_A 78 AFYDKALELD--SS-------------------------------AATAYYG-AGNVYVVKEMYKEAKDMFEKALRAG-M 122 (243)
T ss_dssp HHHHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHcC--Cc-------------------------------chHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 9999887652 21 1223334 6778889999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
.+...|..+...+.+.|++++|..+++++.... ..+...|..+...+.+.|+.++|.+.|+++.+.. ..+..+|..+.
T Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 200 (243)
T 2q7f_A 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAG 200 (243)
T ss_dssp CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 467889999999999999999999999988763 2356788889999999999999999999988763 34678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|.+.|++++|...|++....
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999887
No 34
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=2.7e-07 Score=94.13 Aligned_cols=246 Identities=8% Similarity=-0.059 Sum_probs=143.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~ 262 (687)
+..+|..+...+...|++++|+.+|+++... .-......+..+-..|. ..|+.++|...+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-- 93 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN-- 93 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH--
Confidence 4578899999999999999999999999863 22334456667777777 6788888888874
Q ss_pred cccccccccc------CCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcccccc
Q 005628 263 TMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (687)
Q Consensus 263 ~~~s~em~~~------~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a 335 (687)
+.... ..-+ ....|..+-.. +...|++++|...|++..+....
T Consensus 94 -----~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~~~------------------- 143 (311)
T 3nf1_A 94 -----DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIREK------------------- 143 (311)
T ss_dssp -----HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHHH-------------------
T ss_pred -----HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHHH-------------------
Confidence 22111 0111 23346666666 77777777777777766542100
Q ss_pred CCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 005628 336 RGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 336 ~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~tyn~LI~~~~~~g~~~~A~ 407 (687)
.. .+-.| ....+.. +-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|.
T Consensus 144 ------~~-~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 144 ------VL-GKDHPDVAKQLNN-LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp ------HH-CTTCHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------hc-CCCChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00 00011 1234444 566777777777777777777653 1122 2346677777777777777777
Q ss_pred HHHHHHHHc-------CCCCCcchHHHHHHHH-------HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005628 408 DMVKRMKSL-------GINPRLRSYGPALSVF-------CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (687)
Q Consensus 408 ~l~~~M~~~-------g~~Pd~~ty~~lI~~~-------~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (687)
..|++.... ...|........+..+ ...+.+.+|...++..... -..+..+|..|...|.+.|++
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCH
Confidence 777776642 1222222222222222 2233333344444443322 122456788899999999999
Q ss_pred HHHHHHHHHHHhc
Q 005628 474 DRVYYLLHKLRTS 486 (687)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (687)
++|..+|++..+.
T Consensus 295 ~~A~~~~~~al~l 307 (311)
T 3nf1_A 295 EAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.72 E-value=7.5e-08 Score=96.75 Aligned_cols=250 Identities=9% Similarity=-0.086 Sum_probs=180.8
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~ 241 (687)
..++.++|.+.|+.+.+..... .+.+...|..+...+...|++++|+..|+++.... +.+..+|..+-..|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~---- 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT---- 88 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----
T ss_pred ccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH----
Confidence 3466778999999986542100 11245789999999999999999999999999763 336888999999998
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
..|++++|...|. +.... .-.+...|..+-.. +.+.|++++|...|+++.+.. |+...
T Consensus 89 ------~~~~~~~A~~~~~-------~al~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~a~~~~--~~~~~ 146 (275)
T 1xnf_A 89 ------QAGNFDAAYEAFD-------SVLEL-DPTYNYAHLNRGIA------LYYGGRDKLAQDDLLAFYQDD--PNDPF 146 (275)
T ss_dssp ------HTTCHHHHHHHHH-------HHHHH-CTTCTHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred ------HccCHHHHHHHHH-------HHHhc-CccccHHHHHHHHH------HHHhccHHHHHHHHHHHHHhC--CCChH
Confidence 7899999999995 33332 22255668888888 999999999999999988752 44332
Q ss_pred cchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005628 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (687)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g 401 (687)
+. . .+..+...|++++|...|++..... +++...+. ++..+...+
T Consensus 147 ~~--------------------------------~-~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 191 (275)
T 1xnf_A 147 RS--------------------------------L-WLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNI 191 (275)
T ss_dssp HH--------------------------------H-HHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSS
T ss_pred HH--------------------------------H-HHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhc
Confidence 21 1 3344466799999999998877643 34444454 777778888
Q ss_pred ChHHHHHHHHHHHHcCC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 402 DGDMAFDMVKRMKSLGI--NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~--~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
+.++|...+........ .| +...|..+-..|.+.|+.++|...|+...+.. |+. +.....++...|++++|..
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHH
Confidence 89999999988754321 11 15788899999999999999999999998753 532 2333556677788888776
Q ss_pred HH
Q 005628 479 LL 480 (687)
Q Consensus 479 ll 480 (687)
-+
T Consensus 268 ~~ 269 (275)
T 1xnf_A 268 DL 269 (275)
T ss_dssp --
T ss_pred HH
Confidence 55
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.70 E-value=2e-07 Score=92.34 Aligned_cols=217 Identities=10% Similarity=0.031 Sum_probs=169.5
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVL 232 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G--i~pd----~~tyn~L 232 (687)
.....++.++|.+.|+...+.. .+ ...|..+-..+.+.|++++|+..|++..... ..|+ ..+|..+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KD------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--cc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3446789999999999997654 33 3789999999999999999999999988642 2233 5788888
Q ss_pred HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHh
Q 005628 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (687)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (687)
-..|. ..|+.++|...|. +.... .+. -.. +.+.|++++|...++++..
T Consensus 86 ~~~~~----------~~~~~~~A~~~~~-------~a~~~---~~~------~~~------~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 86 GNAYH----------KLGDLKKTIEYYQ-------KSLTE---HRT------ADI------LTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHH----------HTTCHHHHHHHHH-------HHHHH---CCC------HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HcccHHHHHHHHH-------HHHhc---Cch------hHH------HHHHhHHHHHHHHHHHHHH
Confidence 88888 7899999999995 22221 000 122 6677889999999988776
Q ss_pred cCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005628 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (687)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~ 392 (687)
.. |+ +...|.. +-..|...|++++|.+.|++..... +.+..+|..
T Consensus 134 ~~--~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 178 (258)
T 3uq3_A 134 VN--PE-------------------------------KAEEARL-EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSN 178 (258)
T ss_dssp CC--HH-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cC--cc-------------------------------hHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 41 22 1123334 7778889999999999999998754 346889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+...|.+.|++++|...|+...+.. +.+...|..+-..+.+.|+.++|.+.|+...+.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988763 234678889999999999999999999988654
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.70 E-value=3.7e-06 Score=83.29 Aligned_cols=201 Identities=12% Similarity=-0.064 Sum_probs=143.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.+.|+...... +.+...|..+...+.+.|++++|+++|+++.... +.+...|..+...|.
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 116 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY- 116 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH-
Confidence 4457789999999999986542 2245789999999999999999999999998763 235566666655555
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|+.++|. .+|++....+..|+
T Consensus 117 ---------~~g~~~~A~------------------------------------------------~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 117 ---------EQKRYEEAY------------------------------------------------QRLLEASQDTLYPE 139 (252)
T ss_dssp ---------HTTCHHHHH------------------------------------------------HHHHHHTTCTTCTT
T ss_pred ---------HHhHHHHHH------------------------------------------------HHHHHHHhCccCcc
Confidence 444444444 44444433111221
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
. ...|.. +...|.+.|++++|.+.|++..... +.+...|..+...|.
T Consensus 140 ~-------------------------------~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 140 R-------------------------------SRVFEN-LGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp H-------------------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred c-------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 1 112233 6677888899999999999887753 235788888999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (687)
+.|++++|..+++...+.. ..+...+..+...+.+.|+.++|.++++.+.+. .|+...+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 9999999999999887642 245567788888888999999999999988775 35444433
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=6.4e-06 Score=83.09 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
..++..+-..+.+.|++++|+..|++..+.+ +...+..|-..|.... ...++.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 3567777788889999999999999998833 4566666766676200 02788999999985 322
Q ss_pred ccCCCCCccchhcccccccccccccc----CCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~----~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g 346 (687)
+. + +...|..|-.. +.. .+++++|...|++..+.+ +..
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------- 111 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------- 111 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHH--------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---Ccc--------------------------
Confidence 22 2 33344444444 555 889999999998877654 222
Q ss_pred CCCChhhhHHHHHHHHHh----hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 005628 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~ 418 (687)
.+.. +-..|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|+...+.+
T Consensus 112 ------a~~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 112 ------GCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ------HHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ------HHHH-HHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 2223 4455666 889999999999998876 66778888888888 899999999999888774
Q ss_pred CCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
+...+..+-..|.. .++.++|.+.|+...+.+ +...+..|-..|.+ .++.++|...|++-.+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45677778888888 899999999999988875 36677778888888 89999999999988877
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.66 E-value=1.6e-07 Score=92.48 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=144.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
....|..+-..+.+.|++++|+.+|+++.... +.+...+..+...|. ..|+.++|...|. +.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~~-------~~ 83 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFYD-------KA 83 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HH
Confidence 34678888888999999999999999998642 346778888888888 7899999999995 33
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (687)
... .-.+...|..+... +...|++++|...|++..+.. |+
T Consensus 84 ~~~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~------------------------------- 123 (243)
T 2q7f_A 84 LEL-DSSAATAYYGAGNV------YVVKEMYKEAKDMFEKALRAG--ME------------------------------- 123 (243)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHT--CC-------------------------------
T ss_pred HHc-CCcchHHHHHHHHH------HHHhccHHHHHHHHHHHHHhC--CC-------------------------------
Confidence 332 22245567777777 889999999999999887753 21
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
+...+.. +...|.+.|++++|.+.|+++.... +.+...+..+...+.+.|++++|...|++..... ..+..+|..+.
T Consensus 124 ~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 200 (243)
T 2q7f_A 124 NGDLFYM-LGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAG 200 (243)
T ss_dssp SHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 1223334 6788899999999999999988753 3467889999999999999999999999988763 23567899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCC
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
..|.+.|+.++|.+.++.+.+..
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999998753
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.64 E-value=1.8e-06 Score=84.61 Aligned_cols=200 Identities=12% Similarity=-0.027 Sum_probs=135.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccc
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~e 268 (687)
++...|..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+. ..|+.++|...|
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~--------- 62 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENG--------- 62 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHH---------
Confidence 344678888888999999999999999987532 224455555555555 445555555554
Q ss_pred ccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCC
Q 005628 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 269 m~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
++..+. .|+..
T Consensus 63 ---------------------------------------~~al~~--~P~~~---------------------------- 73 (217)
T 2pl2_A 63 ---------------------------------------KTLVAR--TPRYL---------------------------- 73 (217)
T ss_dssp ---------------------------------------HHHHHH--CTTCH----------------------------
T ss_pred ---------------------------------------HHHHHh--CCCcH----------------------------
Confidence 443332 13221
Q ss_pred CChhhhHHHHHHHHHhh-----------ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005628 349 IDNQDADEIRLSEDAKK-----------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~-----------g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (687)
..|.. +-..|.+. |++++|...|++..+.. +-+...|..+-..|...|++++|...|++..+..
T Consensus 74 ---~a~~~-lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 74 ---GGYMV-LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp ---HHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHH-HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 11222 44445555 99999999999988753 2357788999999999999999999999998877
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.+...+..+-..|...|+.++|...|+...+.. +-+...+..+...+.+.|++++|...|++...
T Consensus 149 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 149 --DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred --cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 688889999999999999999999999998753 23677888899999999999999999887654
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.61 E-value=7.3e-06 Score=84.80 Aligned_cols=243 Identities=10% Similarity=0.010 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCch-------hhhh
Q 005628 192 FQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTL 256 (687)
Q Consensus 192 ~tyn~lI~~~~k~----g~~----~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~-------~~A~ 256 (687)
..|...|+-.-+. ++. ++|+.+|++.... .+-+...|..+...+...+. ...+.|++ ++|.
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHH
Confidence 4555555554443 233 7889999999864 24466777777776652100 00013554 8899
Q ss_pred hhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccC
Q 005628 257 DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER 336 (687)
Q Consensus 257 ~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~ 336 (687)
.+|. +-.....-.+...|..+... +.+.|++++|..+|++..+. .|+...
T Consensus 85 ~~~~-------rAl~~~~p~~~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~--------------- 134 (308)
T 2ond_A 85 NIYE-------RAISTLLKKNMLLYFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT--------------- 134 (308)
T ss_dssp HHHH-------HHHTTTTTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTH---------------
T ss_pred HHHH-------HHHHHhCcccHHHHHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCcc---------------
Confidence 9985 32221011144468888888 88999999999999988763 343221
Q ss_pred CCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 005628 337 GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 337 ~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~-~~g~~~~A~~l~~~M~~ 415 (687)
..|.. +...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..+|+...+
T Consensus 135 ---------------~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~ 197 (308)
T 2ond_A 135 ---------------LVYIQ-YMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 197 (308)
T ss_dssp ---------------HHHHH-HHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred ---------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13445 67778899999999999999987642 34455554433322 36999999999999876
Q ss_pred cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. .-+...|..++..+.+.|+.++|..+|+...+.. +.| ....|..++..+.+.|+.++|..+++++...
T Consensus 198 ~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 198 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 52 2256788889999999999999999999999874 455 4778999999999999999999999999887
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.54 E-value=2.1e-06 Score=82.89 Aligned_cols=165 Identities=9% Similarity=-0.007 Sum_probs=135.3
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|..+... +...|++++|...|++..+.. |+. ...|.. +.
T Consensus 10 ~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~-------------------------------~~~~~~-l~ 49 (225)
T 2vq2_A 10 IKTQLAME------YMRGQDYRQATASIEDALKSD--PKN-------------------------------ELAWLV-RA 49 (225)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTC-------------------------------HHHHHH-HH
T ss_pred HHHHHHHH------HHHHhhHHHHHHHHHHHHHhC--ccc-------------------------------hHHHHH-HH
Confidence 35555555 888999999999999887652 221 223334 77
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~ 437 (687)
..|...|++++|.+.|++..... +.+..+|..+...+... |++++|..+++.+...+..|+ ...|..+...+...|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 88899999999999999998753 34678999999999999 999999999999988433333 5778889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+++.+.. ..+...+..+...|.+.|++++|..++++....
T Consensus 129 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998753 235888999999999999999999999998876
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.53 E-value=4.2e-06 Score=83.82 Aligned_cols=156 Identities=9% Similarity=-0.107 Sum_probs=114.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+.. |+ +...|.. +-..|...|++++|.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~-l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TT-------------------------------RLDMYGQ-IGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TT-------------------------------CTHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC--cc-------------------------------cHHHHHH-HHHHHHHccCHHHHHH
Confidence 667777788887777766532 22 1123344 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD---VDKACSVEEHML 449 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~---~~~A~~l~~~M~ 449 (687)
.|++..+. -+.+...|..+-..+...+++++|...|++..+. .|+ ...|..+-..+...|+ .++|...+++..
T Consensus 130 ~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 130 YMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 99998876 2345667777763444556999999999998875 244 5667777777888888 888888888876
Q ss_pred HCC-CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 450 EHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 450 ~~g-v~pd------~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.. -.|+ ...|..|-..|.+.|++++|...|++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 542 1233 257888888999999999999999999887
No 44
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.53 E-value=3.6e-06 Score=73.60 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=111.0
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
|.. +...|...|++++|.++|+++.... +.+...|..+...+...|++++|..+|+++...+ ..+...|..+...+.
T Consensus 4 ~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYN-LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 444 6788889999999999999998754 3467889999999999999999999999988764 245677888999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.++|.++++++.+.. ..+...+..+...|.+.|++++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998764 346788899999999999999999999998765
No 45
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=98.52 E-value=3.9e-08 Score=92.77 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred ccEEEeccchhcccCC--CCChhHHHHHHHHHHhhCCCCCc-cEEEecccccCC-CCCCChHHHHHHHHHHhCCceeeCC
Q 005628 605 FEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYATP 680 (687)
Q Consensus 605 yd~vIDGanvg~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lvvL~~~~~~~-~~~~~~~~~~l~~~w~~~~~ly~tp 680 (687)
--+||||+|||++.++ .|+..+|..+|++|.++ |+. .+|+++..+.+. .+......++++++|.+.|.|+.||
T Consensus 25 R~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~r---Gh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~TP 101 (185)
T 3v32_B 25 RPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLER---GHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTP 101 (185)
T ss_dssp CCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHT---TCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEEEC
T ss_pred CeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHc---CCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEECC
Confidence 4699999999998776 67899999999999983 655 456777777653 2222345678999999999999999
Q ss_pred CC--------CCCCC
Q 005628 681 TG--------SNDDW 687 (687)
Q Consensus 681 ~~--------~nDDw 687 (687)
.+ ++|||
T Consensus 102 s~~~~g~~~~~ydD~ 116 (185)
T 3v32_B 102 SRRVGGKRVVCYDDR 116 (185)
T ss_dssp CCC-------CCHHH
T ss_pred CcccCCCcccCccHH
Confidence 99 89996
No 46
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=98.46 E-value=5.5e-08 Score=93.88 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=64.0
Q ss_pred ccEEEeccchhcccCC--CCChhHHHHHHHHHHhhCCCCCc-cEEEecccccCC-CCCCChHHHHHHHHHHhCCceeeCC
Q 005628 605 FEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYATP 680 (687)
Q Consensus 605 yd~vIDGanvg~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lvvL~~~~~~~-~~~~~~~~~~l~~~w~~~~~ly~tp 680 (687)
=-|||||+|||++.++ .|+...|..+|++|.++ |+. .+|+++..+.+. ........++++++|.++|.|+.||
T Consensus 25 R~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~R---Gh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~TP 101 (223)
T 3v33_A 25 RPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLER---GHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTP 101 (223)
T ss_dssp CCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHTT---TCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEEC
T ss_pred CeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHc---CCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEECC
Confidence 3699999999998776 67889999999999983 666 457778777653 1222345578999999999999999
Q ss_pred CC--------CCCCC
Q 005628 681 TG--------SNDDW 687 (687)
Q Consensus 681 ~~--------~nDDw 687 (687)
.+ ++|||
T Consensus 102 s~~v~G~r~~sydD~ 116 (223)
T 3v33_A 102 SRRVGGKRVVCYDDR 116 (223)
T ss_dssp EEEETTEEEECCHHH
T ss_pred CCCcCCccccccchH
Confidence 99 88996
No 47
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.45 E-value=2.5e-06 Score=79.34 Aligned_cols=156 Identities=16% Similarity=0.065 Sum_probs=125.7
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|+++.+.. |+ +...+.. +...|...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD--AF-------------------------------DVDVALH-LGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT--SC-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--cc-------------------------------ChHHHHH-HHHHHHHcCCHHHHHH
Confidence 777889999998887664431 21 2233444 7778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (687)
.|+++.+.. +.+...|..+...+...|++++|.+.++++.... ..+...+..+...+...|+.++|.+.+++..+..
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988753 3467889999999999999999999999988762 3466788888889999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...|..+...|...|++++|...+++....
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346788999999999999999999999988765
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.41 E-value=1.7e-06 Score=88.67 Aligned_cols=274 Identities=11% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (687)
.....++.++|...|+...+.. |+ .|. ...|..+-..+...|++++|++.|++.... +-.|. ..++..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 5567899999999999987642 11 111 367888999999999999999999987632 22222 456666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCC----------
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~---------- 299 (687)
+-..+. ..|++++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 667777 789999999988511 1111110111 12245666666 777777
Q ss_pred ----------hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccH
Q 005628 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (687)
Q Consensus 300 ----------~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (687)
+++|...+++....--. .+-.|. ...+.. +-..|...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~-l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTA----------------------------LGDRAAQGRAFGN-LGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHH-HHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh----------------------------cCCHHHHHHHHHH-HHHHHHHhCCH
Confidence 88888887765432000 000011 123444 66788899999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhCCCh
Q 005628 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 369 ~~A~~lf~~M~~~----gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~ty~~lI~~~~~~g~~ 438 (687)
++|.+.|++..+. +.. ....++..+...+...|++++|...+++.... +-.+ ...++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999987642 111 11347888999999999999999999987643 1111 146778888899999999
Q ss_pred HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++|...+++..+. +-. ....+|..+-..|.+.|++++|...+++....
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999987653 111 12457788899999999999999999988765
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.39 E-value=1.8e-05 Score=88.50 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=81.9
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
.+.++.+.|..+|+.+.+. .+-+...|...+..+.+.|++++|..+|+++... .|+...|..++.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--
Confidence 4578999999999999542 2234578999999999999999999999999865 4788877777754332
Q ss_pred cCCcccCCCCchhhhhh----hhhhcccccccccccCCCC--Cccchhcccccc---ccccccccCCChhhHHHHHHHHH
Q 005628 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSPM---IDKLESNSSYRFDDLDSTFNEKE 311 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~----lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~---~~~~~~~~~g~~~~A~~lf~eM~ 311 (687)
..|+.+.|.+ +|. ......|.. +...|...+.-. .....+...|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2355555554 553 222211333 223355544430 00000223678889999998887
Q ss_pred h
Q 005628 312 N 312 (687)
Q Consensus 312 ~ 312 (687)
.
T Consensus 158 ~ 158 (530)
T 2ooe_A 158 V 158 (530)
T ss_dssp T
T ss_pred h
Confidence 7
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.35 E-value=1.1e-06 Score=93.21 Aligned_cols=274 Identities=10% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (687)
.....++.++|...|+...+.. |+ .|. ...|..+-..+...|++++|+..|++.... +-.|. ..+|..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4557889999999999987652 11 121 357888889999999999999999987632 22222 345666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCC----------
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~---------- 299 (687)
+-..|. ..|++++|...+.-. .++....+-. -..+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 666676 789999999888511 0111110100 12246666566 777888
Q ss_pred ----------hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccH
Q 005628 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (687)
Q Consensus 300 ----------~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (687)
+++|...+.+....-- ..+-.|. ..+|.. +-..|...|++
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~ 203 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVT----------------------------ALGDRAAQGRAFGN-LGNTHYLLGNF 203 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHH-HHHHHHHHTBH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH----------------------------hccCcHHHHHHHHH-HHHHHHHccCH
Confidence 8888888876543200 0000011 123444 67888899999
Q ss_pred HHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhCCCh
Q 005628 369 QRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDV 438 (687)
Q Consensus 369 ~~A~~lf~~M~~~gi-~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd-~~ty~~lI~~~~~~g~~ 438 (687)
++|.+.|++..+... .++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999998864210 122 347888999999999999999999987643 11111 46788888999999999
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++|.+.+++..+..- ..+ ..+|..+-..|.+.|++++|...+++....
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998765311 112 567888889999999999999999986643
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.34 E-value=2.3e-05 Score=84.03 Aligned_cols=231 Identities=8% Similarity=-0.029 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCc-hhhhhhhhhhccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~-~~~A~~lf~~~~~~s~em~ 270 (687)
..|+.+-..+.+.|++++|++.|++..... +-+...|+.+-..+. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 567777788889999999999999998753 224667788878887 6786 999999995 333
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
.. .-.+...|+.+-.. +...|++++|...|++..+.. |+ +
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~-------------------------------~ 199 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK-------------------------------N 199 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT-------------------------------C
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--cc-------------------------------C
Confidence 32 22255567777777 888999999999999988752 32 2
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHcCCCCC-cc
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~-~g~~~~A-----~~l~~~M~~~g~~Pd-~~ 423 (687)
...|.. +-..+.+.|++++|++.|+++.+... -+...|+.+-..+.+ .|..++| +..|+..... .|+ ..
T Consensus 200 ~~a~~~-lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 200 YHAWQH-RQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp HHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 234445 66778888999999999999998643 367899999999999 6666888 4777776654 354 46
Q ss_pred hHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHH-Hhc
Q 005628 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL-RTS 486 (687)
Q Consensus 424 ty~~lI~~~~~~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g---------~~~~A~~ll~~M-~~~ 486 (687)
.|+.+-..+.+.| +.++|.+.+.++ ..-..+...+..|...|.+.| ..++|..+|+++ .+.
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 7888888888888 689999999888 333456788899999998874 358999999998 443
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.33 E-value=1.3e-05 Score=78.47 Aligned_cols=174 Identities=14% Similarity=0.046 Sum_probs=135.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...|.. +-..+.+.|++++|..
T Consensus 15 ~~~~g~~~~A~~~~~~al~~--~p~~-------------------------------~~a~~~-lg~~~~~~g~~~~A~~ 60 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKE--NPQD-------------------------------PEALYW-LARTQLKLGLVNPALE 60 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--SSSC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 77899999999999987764 2332 222333 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSM-----------GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~-----------g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A 441 (687)
.|++..+.. +-+...|..+-..+.+. |++++|...|+...+. .|+ ...|..+-..|...|+.++|
T Consensus 61 ~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 61 NGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHH
Confidence 999998754 33677899999999999 9999999999998875 354 56778888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHH-HHHHHcCHHHH
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAA 508 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p-~t~~~-I~~~~~~~~~~ 508 (687)
...|++..+.. .+...+..+-..|...|++++|...|++.... .|.. ..+.. -..+...+...
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 99999999887 78999999999999999999999999999887 3332 23333 34444555443
No 53
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.32 E-value=2.2e-05 Score=94.50 Aligned_cols=249 Identities=11% Similarity=0.106 Sum_probs=176.9
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.+...+..++|..+|+.-. .++ ...+.++. ..|++++|.++.++.. +..+|..+=.++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql- 1116 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL- 1116 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH-
Confidence 4457788899999998861 111 34455554 5678999999988652 4678888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|++++|.+.|. .-.|.-.|.-++.. +.+.|++++|.+.|..-.+.. ++
T Consensus 1117 ---------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A 1117 ---------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred ---------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--cc
Confidence 8899999999995 22344557778888 999999999999998655433 44
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
....+ .+..+|++..+ +.++..-=-.|+...|.. +=+.|...|++++|..+|... ..|..+...|+
T Consensus 1167 ~~Idt--~LafaYAKl~r--leele~fI~~~n~ad~~~-iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1167 SYVET--ELIFALAKTNR--LAELEEFINGPNNAHIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 1232 (1630)
T ss_pred ccccH--HHHHHHHhhcC--HHHHHHHHhCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH
Confidence 43333 35555553311 111111111345555665 667888889999999999884 47999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
+.|++++|.+.+++- -+..+|.-+-.+|...|+++.|...... +..+...+..++..|-+.|.+++|+.
T Consensus 1233 kLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998754 2557787777788888888887776553 34466677788888888888888888
Q ss_pred HHHHH
Q 005628 479 LLHKL 483 (687)
Q Consensus 479 ll~~M 483 (687)
+++.-
T Consensus 1302 LlE~a 1306 (1630)
T 1xi4_A 1302 MLEAA 1306 (1630)
T ss_pred HHHHH
Confidence 88544
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.32 E-value=1.2e-06 Score=93.66 Aligned_cols=274 Identities=11% Similarity=-0.054 Sum_probs=189.5
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKL-GQYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----Gi~p-d~~tyn~ 231 (687)
.....++.++|.+.|+...+.. ++ .|. ...|..+-..|...|++++|+..|++.... +-.| ...++..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4557789999999999987642 11 111 147888889999999999999999998743 2122 3355666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCC----------
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~---------- 299 (687)
+-..|. ..|++++|...+.-. .++....+-. ....|+.+-.. +...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 666676 789999999988511 1111110111 22346666666 788888
Q ss_pred -------hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHH
Q 005628 300 -------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRG 371 (687)
Q Consensus 300 -------~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A 371 (687)
+++|...+.+..+..-. .+-.+ ....|.. +-..|...|++++|
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~-la~~~~~~g~~~~A 242 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMRD----------------------------LGDRGAQGRACGN-LGNTYYLLGDFQAA 242 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----------------------------cCCHHHHHHHHHH-HHHHHHHcCChHHH
Confidence 88888888765432100 00001 1123444 66788999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--C--C-CCcchHHHHHHHHHhCCChHHH
Q 005628 372 FEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--I--N-PRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 372 ~~lf~~M~~~gi-~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g--~--~-Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
.+.|++..+... .++ ..+|..+...|...|++++|...|++..... . . ....+|..+-..|...|+.++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998865311 112 2378889999999999999999999876531 1 0 1246788888999999999999
Q ss_pred HHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEH----GV-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~----gv-~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.+++..+. +- .....+|..+-..|.+.|+.++|..+|++....
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999987653 11 112457888889999999999999999988776
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.32 E-value=1.4e-05 Score=82.55 Aligned_cols=219 Identities=11% Similarity=-0.030 Sum_probs=160.9
Q ss_pred CchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 005628 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (687)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~-------k~g~~-------~~A~~lf~~M~~~Gi~p-d~~tyn~ 231 (687)
..|..+|+...... +-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 35777888875431 123357777776665 45885 9999999999863 345 4568889
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc-chhccccccccccccccCCChhhHHHHHHHH
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~-tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
+...+. +.|++++|..+|. +.... .-.+.. .|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 999888 7899999999995 33332 111332 68888888 88899999999999988
Q ss_pred HhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH
Q 005628 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (687)
.+.. |+. +. .|.....-.+...|+.++|.++|++..+.. +-+...|
T Consensus 161 ~~~~--p~~--~~-----------------------------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (308)
T 2ond_A 161 REDA--RTR--HH-----------------------------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 206 (308)
T ss_dssp HTST--TCC--TH-----------------------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HhcC--CCC--HH-----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 7643 322 11 111101111223699999999999987753 2367899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
..++..+.+.|++++|..+|+...... +.|+ ...|..++..+.+.|+.+.|..+++.+.+.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999863 5664 467888999999999999999999998775
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=4.4e-05 Score=76.85 Aligned_cols=217 Identities=12% Similarity=-0.006 Sum_probs=164.4
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~ 235 (687)
....++.++|.+.|+...+.+ +...+..+-..|.. .+++++|+..|++..+.+ +...+..|-..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 345678999999999986521 22677778888888 999999999999999887 67788888777
Q ss_pred HHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcccccccccccccc----CCChhhHHHHHHHHH
Q 005628 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKE 311 (687)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~----~g~~~~A~~lf~eM~ 311 (687)
|.... ...++.++|...|. +.... + +...+..|-.. +.. .+++++|...|++-.
T Consensus 84 ~~~g~------~~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 84 YYSGQ------GVSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHH
T ss_pred HhCCC------CcccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHH
Confidence 77210 02789999999995 33222 2 33345444444 555 899999999999887
Q ss_pred hcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh----hccHHHHHHHHHHHHhCCCCCCH
Q 005628 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNE 387 (687)
Q Consensus 312 ~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~ 387 (687)
+.+ +...+ .. +-..|.. .+++++|.+.|++..+.+ +.
T Consensus 142 ~~~---~~~a~--------------------------------~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 182 (273)
T 1ouv_A 142 DLN---DGDGC--------------------------------TI-LGSLYDAGRGTPKDLKKALASYDKACDLK---DS 182 (273)
T ss_dssp HTT---CHHHH--------------------------------HH-HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred hcC---cHHHH--------------------------------HH-HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 765 11111 12 4444555 889999999999998875 56
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 005628 388 ASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 388 ~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~g 452 (687)
..+..+-..|.. .+++++|+..|+...+.+ +...+..|-..|.+ .++.++|.+.|+...+.|
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788889999999 999999999999988875 25667777788888 899999999999987765
No 57
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.27 E-value=5.3e-06 Score=82.88 Aligned_cols=234 Identities=8% Similarity=-0.056 Sum_probs=134.7
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc--
Q 005628 202 SKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-- 272 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-- 272 (687)
...|++++|+.+|++..+. .-+....++..+-..|. ..|++++|...+. +....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~al~~~~ 74 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKEAAHLLN-------DALAIRE 74 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHHHH
Confidence 3456666666666665531 11223556677777777 7788888888884 22211
Q ss_pred ----CCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCC
Q 005628 273 ----RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (687)
Q Consensus 273 ----~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~ 347 (687)
..-+ ...+|+.+-.. +...|++++|...|.+.....- .... .-
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~-------------------------~~~~-~~ 122 (283)
T 3edt_B 75 KTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIRE-------------------------KVLG-KF 122 (283)
T ss_dssp HHTCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHH-------------------------HHHC-TT
T ss_pred HHcCCcchHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHH-------------------------HHcC-CC
Confidence 0111 33346666666 7888888888888877654210 0000 00
Q ss_pred CC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 005628 348 SI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--- 416 (687)
Q Consensus 348 ~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--- 416 (687)
.| ....|.. +-..|...|++++|.+.|++.... +-.| ...++..+...|.+.|++++|..+|++....
T Consensus 123 ~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNN-LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 2334555 667788888888888888877653 1122 3456777888888888888888888877643
Q ss_pred ----CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH---C-C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 417 ----GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---H-G--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 417 ----g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~-g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
...+....+-..+..+...+........+..+.. . + ......+|..|-..|.+.|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334444443333333333222222222222111 0 1 112345788889999999999999999988764
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.25 E-value=8.2e-06 Score=83.42 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~ 267 (687)
..+...-..+.+.|++++|+.+|+++....- .+ ...|..+-..|. ..|+.++|...+.-. .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l 70 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----L 70 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----H
Confidence 3445556778899999999999999998632 23 356777777777 789999999988511 1
Q ss_pred cccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCC-CCCccccchhhHhhccccccCCCcchhcc
Q 005628 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 268 em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~-~Pd~~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
++....+-. ....|..+-.. +...|++++|...|.+..+..- .++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------- 121 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG----------------------- 121 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------------
T ss_pred HHhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCchH-----------------------
Confidence 111110111 23346666666 8899999999999988654310 011000
Q ss_pred cCCCCChhhhHHHHHHHHHhhcc--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHH
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMS 399 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~ 399 (687)
...++.. +-..|...|+ +++|.+.|++.... +-.| ...++..+...+..
T Consensus 122 -----~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 122 -----EARALYN-LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp -----HHHHHHH-HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHH-HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0123334 6677788888 89999988876532 1111 24578888889999
Q ss_pred cCChHHHHHHHHHHHHc----CCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 005628 400 MGDGDMAFDMVKRMKSL----GIN-PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVE 469 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~----g~~-Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~ 469 (687)
.|++++|...+++.... +-. ....+|..+...+...|+.++|.+.+++..+..- ..+ ..++..+-..|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999987643 111 1124788888999999999999999998764311 112 5677888899999
Q ss_pred cCChHHHHHHHHHHHhc
Q 005628 470 AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (687)
.|++++|...+++....
T Consensus 276 ~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999987654
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.25 E-value=9.5e-06 Score=86.65 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~ 267 (687)
..+..+-..+.+.|++++|+.+|+++.+..- .+. ..|..+-..|. ..|++++|...|.-. .
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 4555566788999999999999999998632 233 46677777777 778999999988511 1
Q ss_pred cccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc
Q 005628 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (687)
Q Consensus 268 em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (687)
++....+-. ....|..+-.. +...|++++|...|++..+..-..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~---------------------------- 159 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQL---------------------------- 159 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHh----------------------------
Confidence 111111111 23346667667 889999999999998876531000
Q ss_pred CCCC-ChhhhHHHHHHHHHhhcc-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCC
Q 005628 346 DWSI-DNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGD 402 (687)
Q Consensus 346 g~~p-d~~tyn~~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~g~ 402 (687)
+-.| ...+|+. +-..|...|+ +++|.+.|++.... +-.+ ...+|..+-..|...|+
T Consensus 160 ~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 160 GDRLSEGRALYN-LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp TCHHHHHHHHHH-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHH-HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 0000 1223444 6678888899 99999998876531 1111 23578888899999999
Q ss_pred hHHHHHHHHHHHHcCC-CCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCC
Q 005628 403 GDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGK 472 (687)
Q Consensus 403 ~~~A~~l~~~M~~~g~-~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv----~-pd~~ty~~Li~~~~~~g~ 472 (687)
+++|...+++.....- .++ ..+|..+-..|...|+.++|.+.+++..+..- . ....+|..+-..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765310 011 23788899999999999999999998765311 1 125678888999999999
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
+++|..+|++....
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.24 E-value=1.3e-05 Score=81.54 Aligned_cols=241 Identities=11% Similarity=0.000 Sum_probs=152.8
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYN 230 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~-~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn 230 (687)
.....++.++|.++|+...+...... .........|..+-..|...|++++|+.+|++.... +-.| ...+|.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45577899999999999865210000 001223467888999999999999999999998854 2223 356777
Q ss_pred HHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc------CCCC-CccchhccccccccccccccCCChhhH
Q 005628 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~------~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A 303 (687)
.+-..|. ..|+.++|...|. +.... ..-+ ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7878888 8899999999995 22221 0111 33447777777 8999999999
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhC-
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (687)
..+|++....-.. .. .+-.|+ ..++.. +...|.+.|++++|.+.|+++...
T Consensus 173 ~~~~~~a~~~~~~-------------------------~~-~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 173 EYYYQRALEIYQT-------------------------KL-GPDDPNVAKTKNN-LASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHHHH-------------------------TS-CTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------Hh-CCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999987653100 00 001122 235665 788999999999999999998852
Q ss_pred ------CCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 382 ------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 382 ------gi~pd-------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
...+. ...+..+...+...+.+.+|...+...... -..+..+|..+...|.+.|+.++|.+.|++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11111 222333334444556666666667665543 2235577889999999999999999999987
Q ss_pred HH
Q 005628 449 LE 450 (687)
Q Consensus 449 ~~ 450 (687)
.+
T Consensus 305 l~ 306 (311)
T 3nf1_A 305 MR 306 (311)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.24 E-value=1.2e-05 Score=85.10 Aligned_cols=248 Identities=11% Similarity=0.006 Sum_probs=172.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccc
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTM 264 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~ 264 (687)
+....+...-..+.+.|++++|+.+|+++....- .+ ...|..+-..|. ..|++++|...|.-.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a-- 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD-- 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH--
Confidence 3446677777888999999999999999997632 23 346777777777 789999999988511
Q ss_pred ccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCC-CCccccchhhHhhccccccCCCcch
Q 005628 265 NSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQ 341 (687)
Q Consensus 265 ~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~-Pd~~ty~~~~li~g~~~~a~~~~~~ 341 (687)
.++....+-. ....|..+-.. +...|++++|...|++..+..-. ++...
T Consensus 74 --l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 125 (406)
T 3sf4_A 74 --LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------- 125 (406)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------
T ss_pred --HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccc--------------------
Confidence 1111111111 23346666666 88999999999999877653100 00000
Q ss_pred hcccCCCCChhhhHHHHHHHHHhhcc--------------------HHHHHHHHHHHHh----CCCCC-CHHHHHHHHHH
Q 005628 342 SRKKDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCL----DEVPM-NEASLTAVGRM 396 (687)
Q Consensus 342 m~~~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~----~gi~p-d~~tyn~LI~~ 396 (687)
...++.. +-..|...|+ +++|.+.|++... .+-.| ...+|..+-..
T Consensus 126 --------~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 196 (406)
T 3sf4_A 126 --------EARALYN-LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT 196 (406)
T ss_dssp --------HHHHHHH-HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------hHHHHHH-HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 0123344 6677888888 9999999887653 22112 23578888899
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE-EPELEALLRV 466 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g-~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd-~~ty~~Li~~ 466 (687)
|...|++++|...+++..... -.++ ..+|..+-..|...|+.++|...+++..+. +-.+. ..+|..+-..
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 999999999999999876431 0112 247888889999999999999999987643 21111 5678888999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|++++|...+++....
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.21 E-value=2.5e-05 Score=72.47 Aligned_cols=165 Identities=13% Similarity=-0.019 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHH
Q 005628 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (687)
Q Consensus 227 ~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~l 306 (687)
..|..+...+. ..|+.++|...|. +.... .-.+...|..+... +...|++++|...
T Consensus 9 ~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~A~~~ 64 (186)
T 3as5_A 9 VYYRDKGISHA----------KAGRYSQAVMLLE-------QVYDA-DAFDVDVALHLGIA------YVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHH----------HHTCHHHHHHHHT-------TTCCT-TSCCHHHHHHHHHH------HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHH----------HhcCHHHHHHHHH-------HHHHh-CccChHHHHHHHHH------HHHcCCHHHHHHH
Confidence 34555566666 6789999999995 33332 11245557777777 8899999999999
Q ss_pred HHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC
Q 005628 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (687)
Q Consensus 307 f~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (687)
|++..+.. |+ +...|.. +...|...|++++|.+.|+++.... +.+
T Consensus 65 ~~~~~~~~--~~-------------------------------~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 109 (186)
T 3as5_A 65 LERSLADA--PD-------------------------------NVKVATV-LGLTYVQVQKYDLAVPLLIKVAEAN-PIN 109 (186)
T ss_dssp HHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhcC--CC-------------------------------CHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-cHh
Confidence 99887652 22 1223334 6778889999999999999988753 357
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
...+..+...+...|++++|...+++..... ..+...|..+...+...|+.++|.+.++...+.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7889999999999999999999999988763 345678899999999999999999999988653
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.18 E-value=9.6e-06 Score=80.98 Aligned_cols=236 Identities=9% Similarity=-0.026 Sum_probs=146.2
Q ss_pred hhcCCCchhhhHHHhhhcCCCC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 005628 162 QRTNDSGQYKVRGITDEKGSKK-SKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYNVLL 233 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~-~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn~Ll 233 (687)
..++.++|...|++-.+.-.+. ....+....+|..+-..|...|++++|+..|++.... +-.| ...+|..+-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3456666666666644311000 0011223468889999999999999999999998854 2223 355778888
Q ss_pred HHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc----CCC--C-CccchhccccccccccccccCCChhhHHHH
Q 005628 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS----RDM--D-NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (687)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~----~g~--~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~l 306 (687)
..|. ..|++++|...|. +.... .+- + ....|..+-.. +...|++++|...
T Consensus 93 ~~~~----------~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~ 149 (283)
T 3edt_B 93 VLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKFHPDVAKQLNNLALL------CQNQGKAEEVEYY 149 (283)
T ss_dssp HHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHH
T ss_pred HHHH----------HhccHHHHHHHHH-------HHHHHHHHHcCCCChHHHHHHHHHHHH------HHHcCCHHHHHHH
Confidence 8888 8899999999985 22211 011 1 33447777777 8999999999999
Q ss_pred HHHHHhcC---CCCCccccchhhHhhccccccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC-
Q 005628 307 FNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (687)
Q Consensus 307 f~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (687)
|++..+.- ..|+ .| ...++.. +-..|.+.|++++|.++|++....
T Consensus 150 ~~~al~~~~~~~~~~-----------------------------~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 150 YRRALEIYATRLGPD-----------------------------DPNVAKTKNN-LASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHSCTT-----------------------------CHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-----------------------------CHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99876530 0011 12 2345666 778999999999999999998753
Q ss_pred ------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH---HcC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 382 ------EVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMK---SLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 382 ------gi~pd~-~tyn~LI~~~~~~g~~~~A~~l~~~M~---~~g--~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
...+.. ..|..+...+...+....+..+..... ..+ ......+|..+...|...|+.++|..+|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 122222 233333333333333222222211111 111 11234578888999999999999999999876
Q ss_pred H
Q 005628 450 E 450 (687)
Q Consensus 450 ~ 450 (687)
+
T Consensus 280 ~ 280 (283)
T 3edt_B 280 R 280 (283)
T ss_dssp T
T ss_pred H
Confidence 5
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.16 E-value=0.00012 Score=81.72 Aligned_cols=241 Identities=10% Similarity=0.015 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchh-------hhh
Q 005628 192 FQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTL 256 (687)
Q Consensus 192 ~tyn~lI~~~~k~----g~~----~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~-------~A~ 256 (687)
..|...|...-.. ++. ..|+.+|++.... .+-+...|..+...+..... .-...|+++ +|.
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~---~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH---HHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhch---hhhhccchhhhhhhhHHHH
Confidence 5677666544332 232 4788899998865 33467777777777662100 000157776 888
Q ss_pred hhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcccccc
Q 005628 257 DTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (687)
Q Consensus 257 ~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a 335 (687)
.+|. +-... -.+ +...|..+... +.+.|++++|..+|+...+. .|+..+
T Consensus 307 ~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~~~g~~~~A~~~~~~al~~--~p~~~~-------------- 356 (530)
T 2ooe_A 307 NIYE-------RAIST-LLKKNMLLYFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT-------------- 356 (530)
T ss_dssp HHHH-------HHTTT-TCSSCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHS--SSSCHH--------------
T ss_pred HHHH-------HHHHH-hCcccHHHHHHHHHH------HHhcCCHHHHHHHHHHHhCc--cccCch--------------
Confidence 8885 22221 123 44558888777 88899999999999988874 343211
Q ss_pred CCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 005628 336 RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 336 ~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~-~~~~~g~~~~A~~l~~~M~ 414 (687)
..|.. ....+.+.|++++|.++|++..+... .+...|-.... .+...|+.++|..+|+...
T Consensus 357 ----------------~~~~~-~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 357 ----------------LVYIQ-YMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp ----------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ----------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 13444 66677789999999999999887532 12223322222 2346899999999999877
Q ss_pred HcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 415 SLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 415 ~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+. .| +...|..++..+.+.|+.++|..+|+.....+ ..|+ ...|...+......|+.+.+..++.++...
T Consensus 419 ~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 24 46788999999999999999999999998864 2333 558888899999999999999999998877
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.15 E-value=1.7e-05 Score=69.21 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=100.5
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|..+|+++.+.. |+ +...|.. +...+...|++++|.+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~-~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD--PR-------------------------------SAEAWYN-LGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC--Cc-------------------------------chhHHHH-HHHHHHHhcCHHHHHH
Confidence 778899999999999987653 21 1223334 6778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+|+++...+ +.+...|..+...+...|++++|..+++++.... ..+...+..+...+.+.|+.++|...++++.+.
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999998754 3467889999999999999999999999998763 235678888999999999999999999998764
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.10 E-value=0.00015 Score=68.01 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=123.0
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...|.. +-..|.+.|++++|.+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~--~p~~-------------------------------~~~~~~-la~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKA--DPNN-------------------------------VETLLK-LGKTYMDIGLPNDAIE 60 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHHHHHCCCHHHHHH
Confidence 77889999999999987764 2332 223334 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (687)
.+....... +-+...+..+-..+...++++.|...+....... +-+...+..+-..|.+.|+.++|.+.|+...+..
T Consensus 61 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~- 137 (184)
T 3vtx_A 61 SLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK- 137 (184)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-
Confidence 999887653 2356777778888889999999999998877652 2345677888888999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+-+...|..+-..|.+.|++++|...|++..+.
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 236778888999999999999999999987765
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.09 E-value=7e-05 Score=74.73 Aligned_cols=190 Identities=11% Similarity=-0.018 Sum_probs=121.8
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhH
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (687)
..|++++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+..-.|+...
T Consensus 15 ~~~~~~~A~~~~~-------~~l~~-~p~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~------ 74 (272)
T 3u4t_A 15 KNNNYAEAIEVFN-------KLEAK-KYNSPYIYNRRAVC------YYELAKYDLAQKDIETYFSKVNATKAKS------ 74 (272)
T ss_dssp TTTCHHHHHHHHH-------HHHHT-TCCCSTTHHHHHHH------HHHTTCHHHHHHHHHHHHTTSCTTTCCH------
T ss_pred HhcCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHHhhHHHHHHHHHHHHhccCchhHHH------
Confidence 6778888888884 33322 11244456666666 7788888888888887776331121111
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~ 407 (687)
..|.. +-..|...|++++|.+.|++..+.. +.+..+|..+-..|...|++++|.
T Consensus 75 ------------------------~~~~~-lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 75 ------------------------ADFEY-YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp ------------------------HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------HHHHH-HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH
Confidence 11223 5567778888888888888877643 224567888888888888888888
Q ss_pred HHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 005628 408 DMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLHKL 483 (687)
Q Consensus 408 ~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~---~~~A~~ll~~M 483 (687)
..|++..+. .|+. ..|..+-..+...+++++|.+.|+...+.. +.+...|..+-..+...|+ .++|...+++.
T Consensus 129 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 129 QYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 888776554 3433 444444424445568888888888877643 2235666667777777777 66777777766
Q ss_pred Hhc
Q 005628 484 RTS 486 (687)
Q Consensus 484 ~~~ 486 (687)
...
T Consensus 206 ~~~ 208 (272)
T 3u4t_A 206 IEV 208 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.08 E-value=3.3e-05 Score=85.33 Aligned_cols=214 Identities=4% Similarity=-0.142 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCch-hhhhhhhhhcccccccccccCCCCCccchhcc
Q 005628 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (687)
Q Consensus 206 ~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~-~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~L 284 (687)
.+++|+..+++.... -..+...|..+-..|. ..|++ ++|...|. +.... .-.+...|..|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~l 143 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQL 143 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHH
Confidence 367777778765532 2236677777777777 78999 99999995 33222 11245568888
Q ss_pred ccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh
Q 005628 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (687)
Q Consensus 285 i~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (687)
-.. |.+.|++++|...|++..+.. |+... |.. +-..|..
T Consensus 144 g~~------~~~~g~~~~A~~~~~~al~~~--p~~~~--------------------------------~~~-lg~~~~~ 182 (474)
T 4abn_A 144 GEV------YWKKGDVTSAHTCFSGALTHC--KNKVS--------------------------------LQN-LSMVLRQ 182 (474)
T ss_dssp HHH------HHHHTCHHHHHHHHHHHHTTC--CCHHH--------------------------------HHH-HHHHHTT
T ss_pred HHH------HHHcCCHHHHHHHHHHHHhhC--CCHHH--------------------------------HHH-HHHHHHH
Confidence 777 999999999999999887653 55322 223 5566667
Q ss_pred h---------ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCC----Ccc
Q 005628 365 K---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLR 423 (687)
Q Consensus 365 ~---------g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~P----d~~ 423 (687)
. |++++|.+.|++..+.. +-+...|..+-.+|... |++++|...|++..+. .| +..
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPD 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHH
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHH
Confidence 7 99999999999988753 33678899999999998 9999999999998875 35 678
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
.|..+-..|...|++++|.+.|++..+.. .-+...+..+-..+...|++++|...+.++
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999988753 225667888889999999999998765544
No 69
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.03 E-value=0.00016 Score=77.39 Aligned_cols=238 Identities=9% Similarity=-0.031 Sum_probs=172.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~-~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
.+.+.++.++|++.|+...... | -+...|+.+-..+.+.|+ +++|+..|++..... +-+...|+.+-.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC--c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 5567889999999999986532 1 134788889999999996 999999999999753 225678888888888
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..|++++|+..|. +.... .-.+...|..+-.. +.+.|++++|+..|+++.+.. |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 7789999999995 33332 22256668877777 888999999999999998763 3
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh-hccHHHH-----HHHHHHHHhCCCCCCHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k-~g~~~~A-----~~lf~~M~~~gi~pd~~tyn 391 (687)
+. ...|+. +-..|.+ .|..++| ++.|++..... +-+...|+
T Consensus 232 ~~-------------------------------~~a~~~-lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~ 278 (382)
T 2h6f_A 232 RN-------------------------------NSVWNQ-RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN 278 (382)
T ss_dssp TC-------------------------------HHHHHH-HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred CC-------------------------------HHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 21 223334 4455556 5554666 57788777643 23577899
Q ss_pred HHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC---------ChHHHHHHHHHH-HHCCCCCC-HH
Q 005628 392 AVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPE-EP 458 (687)
Q Consensus 392 ~LI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g---------~~~~A~~l~~~M-~~~gv~pd-~~ 458 (687)
.+-..+.+.| +.++|++.+.++ +. -..+...+..+...|.+.| ..++|.++++.+ .+ +.|. ..
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHH
Confidence 9999999988 689999999887 22 2334577888888998874 358999999998 44 3343 34
Q ss_pred HHHHHHHHH
Q 005628 459 ELEALLRVS 467 (687)
Q Consensus 459 ty~~Li~~~ 467 (687)
-|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.02 E-value=0.00051 Score=64.27 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=121.9
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
+...|.. |=..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+....... .-+...+..+-
T Consensus 4 ~~~iy~~-lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMD-IGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 3456777 7788999999999999999988754 2367889999999999999999999999987663 23455667777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-hhHHH-HHHHHHcCHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTAD-VIAKWFNSKEA 507 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~-p~t~~-~I~~~~~~~~~ 507 (687)
..+...++.+.|.+.+....+.. +-+...+..+-..|.+.|++++|+..|++.... .+. +..+. .-..+...+..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 88899999999999999987753 336778889999999999999999999998887 322 22443 34455555655
Q ss_pred HHhh
Q 005628 508 ARLG 511 (687)
Q Consensus 508 ~~a~ 511 (687)
.+|.
T Consensus 158 ~~A~ 161 (184)
T 3vtx_A 158 DEAV 161 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 71
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.00 E-value=0.0015 Score=71.85 Aligned_cols=278 Identities=12% Similarity=0.070 Sum_probs=145.8
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.++.++|.+.|+.-.+.| +...+..|-..|.. .++.++|++.|++..+.| +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSR 195 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence 567888888888876543 12566666667776 788999999999888775 66777777777763
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
.. ...++.++|...|. +..+. | +...+..|-.. +.......+++++|..+|++..+.|..
T Consensus 196 g~------g~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~--y~~g~g~~~~~~~A~~~~~~a~~~~~~-- 255 (490)
T 2xm6_A 196 GL------GVERNDAISAQWYR-------KSATS-G--DELGQLHLADM--YYFGIGVTQDYTQSRVLFSQSAEQGNS-- 255 (490)
T ss_dssp TS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH--HHHTSSSCCCHHHHHHHHHHHHTTTCH--
T ss_pred CC------CCCcCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH--HHcCCCCCCCHHHHHHHHHHHHHCCCH--
Confidence 11 13678888888884 22222 2 22333333333 000022377888888888887776521
Q ss_pred ccccc-hhh-Hhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhh-----ccHHHHHHHHHHHHhCCCCCC
Q 005628 319 GHMKL-NSQ-LLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMN 386 (687)
Q Consensus 319 ~~ty~-~~~-li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi~pd 386 (687)
..+. .+. ...|.. ..|...+......| +...+.. |-..|... ++.++|.+.|++..+.| +
T Consensus 256 -~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~-Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 256 -IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYY-LAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp -HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHH-HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHH-HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 1111 000 001100 11222222222221 1112222 22333333 45555555555555543 3
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 387 EASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g---~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
...+..|-..|...| +.++|.+.|+...+.| +...+..|-..|.. .++.++|.+.|+...+.| +...
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 401 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAA 401 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHH
Confidence 344444444554444 4555555555555443 33444444445554 455556666555555544 3444
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 460 LEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
+..|-..|.+ .++.++|...|++-.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4555555554 55555665555555555
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.98 E-value=7.9e-05 Score=79.17 Aligned_cols=237 Identities=9% Similarity=0.044 Sum_probs=161.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~ 272 (687)
-..+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.++|...+.-. .++...
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~ 175 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKE 175 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHh
Confidence 345678899999999999998531 1133 345666666666 778888888887411 111111
Q ss_pred CCC-C--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCC-CCccccchhhHhhccccccCCCcchhcccCCC
Q 005628 273 RDM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 273 ~g~-~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~-Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
.+- . ...+++.+-.. +...|++++|...|.+..+..-. +|...
T Consensus 176 ~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------- 222 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQL--------------------------- 222 (383)
T ss_dssp CSTTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------
T ss_pred CccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChHH---------------------------
Confidence 111 1 12346666666 88999999999999876643100 11100
Q ss_pred CChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC
Q 005628 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GIN 419 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~ 419 (687)
...+|+. +-..|...|++++|.+.|++..+. +. +....++..+-..|.+.|++++|...+++.... +-.
T Consensus 223 -~~~~~~~-lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 300 (383)
T 3ulq_A 223 -MGRTLYN-IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300 (383)
T ss_dssp -HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 0124445 778889999999999999988761 33 334678999999999999999999999987643 221
Q ss_pred CCcchHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 420 PRLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 420 Pd~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.....+..+-..|...|+ +++|..+++.. +..|+ ...+..|-..|.+.|++++|...|++....
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222335667777888888 77777777765 33333 346777888999999999999999987653
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.97 E-value=0.00042 Score=72.93 Aligned_cols=274 Identities=9% Similarity=-0.024 Sum_probs=173.9
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQ----YHYNVL 232 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P--~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi-~pd~----~tyn~L 232 (687)
....++.++|...++...... +.. .| -...++.+-..+...|++++|...+++.....- .++. .+++.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 335788899999998865432 111 11 123566777788899999999999999874211 1222 224445
Q ss_pred HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC----CccchhccccccccccccccCCChhhHHHHHH
Q 005628 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~----d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
-..+. ..|++++|...+.-. .+.....+-. ....++.+-.. +...|++++|...++
T Consensus 100 a~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 100 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHH
Confidence 55555 679999999988511 1111111111 12234555555 788999999999998
Q ss_pred HHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-- 386 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-- 386 (687)
+.....-..... ....+|.. +-..+...|++++|...+++.....-.++
T Consensus 160 ~al~~~~~~~~~----------------------------~~~~~~~~-la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 160 SGIEVLSSYQPQ----------------------------QQLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHTTTSCGG----------------------------GGHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhhccCcH----------------------------HHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 876542111000 01123444 66778899999999999998865311111
Q ss_pred HHHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC
Q 005628 387 EASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (687)
Q Consensus 387 ~~tyn----~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p 455 (687)
..... .++..+...|++++|...+++.......+. ...+..+...+...|+.++|...++..... |..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 233447789999999999987654321111 224667778899999999999999887543 3323
Q ss_pred CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 456 EEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 456 d~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.. .+..+-..+...|+.++|...|++....
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 332 5666777788999999999998887654
No 74
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.97 E-value=0.0023 Score=70.31 Aligned_cols=249 Identities=10% Similarity=-0.053 Sum_probs=150.0
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.++...|.+.|+.-.+.| +...+..|=..|.. .++.++|++.|++..+.| +...+..|=..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHE 123 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 456677888888775432 22566667677777 889999999999988876 55666666666662
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
.. +..++.++|...|. +..+. | +...+..|-.. +.......++.++|...|++..+.| +
T Consensus 124 g~------g~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~--y~~g~g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 124 GN------GVKVDKAESVKWFR-------LAAEQ-G--RDSGQQSMGDA--YFEGDGVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp TS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH--HHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CC------CCCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH--HHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 11 02577888888884 22222 2 22222222222 0000223678888998888877664 2
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh----hccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
...+. . |-..|.. .++.++|.+.|++..+.| +...+..|-
T Consensus 183 ~~a~~--------------------------------~-Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 226 (490)
T 2xm6_A 183 VWSCN--------------------------------Q-LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLA 226 (490)
T ss_dssp HHHHH--------------------------------H-HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHH--------------------------------H-HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 22221 2 3333333 567777777777766654 455666666
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 395 RMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 395 ~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
..|.. .++.++|..+|+...+.| +...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 300 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHL 300 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 66665 667777777777666554 23344444444555 667777777777766554 44455555566
Q ss_pred HHhc-----CChHHHHHHHHHHHhc
Q 005628 467 SVEA-----GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~-----g~~~~A~~ll~~M~~~ 486 (687)
|... ++.++|...|++..+.
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 6655 6777777777766665
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.94 E-value=0.00022 Score=72.95 Aligned_cols=130 Identities=9% Similarity=-0.027 Sum_probs=90.6
Q ss_pred HHHHHHhh-ccHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc------hH
Q 005628 358 RLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SY 425 (687)
Q Consensus 358 lI~~~~k~-g~~~~A~~lf~~M~~~----gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~------ty 425 (687)
+-..|... |++++|.+.|++..+. +-.+. ..+|+.+-..|.+.|++++|...|++........... .|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 55677775 9999999999987652 11111 3578889999999999999999999988764222221 56
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCChHHHHHHHHHHHhccCCCChh
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------PELEALLRVSV--EAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~------~ty~~Li~~~~--~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
..+..++...|+.++|...|++..+ +.|+. ..+..|+.+|. ..+++++|...|+++.. +.|.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~----l~~~ 272 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR----LDKW 272 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC----CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc----cHHH
Confidence 7777888999999999999998765 23332 23445666664 45667788887765433 4555
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.91 E-value=0.00081 Score=70.70 Aligned_cols=240 Identities=14% Similarity=-0.012 Sum_probs=156.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccC
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~----tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~ 273 (687)
-..+...|++++|..++++.....-..+.. .++.+-..+. ..|++++|...+.-. .++....
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~ 86 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQH 86 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhc
Confidence 345567899999999999988654222332 3444445555 678899999888511 1111111
Q ss_pred CCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCC--C
Q 005628 274 DMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS--I 349 (687)
Q Consensus 274 g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~--p 349 (687)
+.. -..+++.+-.. +...|++++|...+++.....-. .+-. |
T Consensus 87 ~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~----------------------------~~~~~~~ 132 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINE----------------------------QHLEQLP 132 (373)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCTTST
T ss_pred CcHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHH----------------------------hccccCc
Confidence 111 11123444445 77899999999999887653100 0000 1
Q ss_pred C-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-c
Q 005628 350 D-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP----MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-R 423 (687)
Q Consensus 350 d-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~----pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ 423 (687)
. ...+.. +-..|...|++++|...+++....... ....+|..+-..+...|++++|...+++.....-.++. .
T Consensus 133 ~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 211 (373)
T 1hz4_A 133 MHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211 (373)
T ss_dssp HHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence 1 112333 556788999999999999987653211 13467888889999999999999999988754212221 1
Q ss_pred hHH-----HHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 424 SYG-----PALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 424 ty~-----~lI~~~~~~g~~~~A~~l~~~M~~~gv~p---d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+. ..+..+...|+.++|...+++.......+ ....+..+...+...|++++|..++++....
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222 23344779999999999999886543221 1345677888999999999999999987654
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.88 E-value=0.00016 Score=79.72 Aligned_cols=156 Identities=8% Similarity=-0.099 Sum_probs=130.9
Q ss_pred cccCCCh-hhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~-~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
+...|++ ++|...|++..+.. |+. ...|.. +-..|.+.|++++|.
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~--p~~-------------------------------~~a~~~-lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLE--PEL-------------------------------VEAWNQ-LGEVYWKKGDVTSAH 157 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHC--TTC-------------------------------HHHHHH-HHHHHHHHTCHHHHH
T ss_pred HHhccccHHHHHHHHHHHHhhC--CCC-------------------------------HHHHHH-HHHHHHHcCCHHHHH
Confidence 7889999 99999999887652 321 223445 778899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC--------
Q 005628 373 EIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-------- 435 (687)
Q Consensus 373 ~lf~~M~~~gi~pd~~tyn~LI~~~~~~---------g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~-------- 435 (687)
+.|++..+.. |+...|..+-..|... |++++|.+.|++..+.. .-+...|..+-..|...
T Consensus 158 ~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 9999998764 7788999999999999 99999999999988763 23467888888899888
Q ss_pred CChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|++++|.+.|+...+..-. -+...|..+-..|...|++++|...|++....
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999875310 37889999999999999999999999998876
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.85 E-value=0.0017 Score=78.48 Aligned_cols=246 Identities=12% Similarity=-0.003 Sum_probs=161.9
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~ 241 (687)
..++.++|.++.+... .. .+|..+=.++-+.|++++|+..|.+. -|...|.-++..|.
T Consensus 1088 ~i~nldrAiE~Aervn------~p------~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~---- 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EP------AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN---- 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CH------HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH----
Confidence 6667888888887661 11 68888888888889999999988664 36777888888888
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
+.|++++|.+.+. |-.+ -.++....+-+.-+ |++.+++++...+.. .|+...
T Consensus 1146 ------~lGkyEEAIeyL~--------mArk-~~~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n~ad 1197 (1630)
T 1xi4_A 1146 ------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNAH 1197 (1630)
T ss_pred ------HcCCHHHHHHHHH--------HHHh-hcccccccHHHHHH------HHhhcCHHHHHHHHh-------CCCHHH
Confidence 7888888888883 3221 11222233346666 888888775443321 233333
Q ss_pred cchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005628 322 KLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (687)
Q Consensus 322 y~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~ 396 (687)
|. .+-+.+. ..|..+|... ..|.. +...|++.|++++|.+.+++- -+..+|.-+-.+
T Consensus 1198 ~~--~iGd~le~eg~YeeA~~~Y~kA---------~ny~r-LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1198 IQ--QVGDRCYDEKMYDAAKLLYNNV---------SNFGR-LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HH--HHHHHHHhcCCHHHHHHHHHhh---------hHHHH-HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 32 1111111 2333333332 25666 889999999999999999876 366888888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA--GKGD 474 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~--g~~~ 474 (687)
|...|++..|...... +.-+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++. +++.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 8888888888876653 33355567788888999999999999987665433 33444565566666554 3344
Q ss_pred HHHHHHH
Q 005628 475 RVYYLLH 481 (687)
Q Consensus 475 ~A~~ll~ 481 (687)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 4444444
No 79
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.71 E-value=0.00098 Score=63.76 Aligned_cols=124 Identities=10% Similarity=-0.049 Sum_probs=105.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+...|++++|.+.|++. +.|+...|..+-..|.+.|++++|...|+...... ..+...|..+-..|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 556778899999999999977 46789999999999999999999999999988763 3356788889999999999
Q ss_pred hHHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGV--------------YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv--------------~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+...+..- .| ....|..+-..|.+.|++++|...|++....
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999987531 11 2367888889999999999999999999887
No 80
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.68 E-value=0.0012 Score=68.11 Aligned_cols=123 Identities=9% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHH--cC--ChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-----NEASLTAVGRMAMS--MG--DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-----d~~tyn~LI~~~~~--~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
++..|.+.|+.+.|.+++++|.+. .| +..+..-|..++.. .| +..+|+.+|+++... .|+..+-..|
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lL 217 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHH
Confidence 778999999999999999999874 46 36677777777333 34 899999999998655 3654455666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC-----CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~-----gv----~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.++.+.|++++|.+.++.+.+. .- .-|..++.-+|..+...|+ +|.+++.++...
T Consensus 218 ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 218 LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 67899999999999999977653 11 2356666455555556676 889999999987
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.68 E-value=0.0035 Score=60.71 Aligned_cols=131 Identities=8% Similarity=-0.029 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (687)
..|.. +-..|.+.|++++|.+.|++..+....++...+..+-..+.+.|++++|...|+...... +-+...|..+-..
T Consensus 8 ~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKN-EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 34444 556788999999999999999887655788888889999999999999999999988653 1245678888899
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPE-E-------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd-~-------~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|+.++|.+.|++..+.. |+ . ..|..+-..+...|++++|...|++....
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999999999988753 33 3 45777777888999999999999999876
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.68 E-value=0.0015 Score=63.43 Aligned_cols=142 Identities=10% Similarity=0.015 Sum_probs=109.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+..-.++.. .+.. +-..|.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~-~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSV--------------------------------TAYN-CGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHH--------------------------------HHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcH--------------------------------HHHH-HHHHHHHhhcHHHHHH
Confidence 678899999999999887754223332 2334 6677889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--------chHHHHHHHHHhCCChHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--------~ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
.|++...... -+...|..+-..|...|++++|...|++..+. .|+. ..|..+=..+...|+.++|.+.|
T Consensus 64 ~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 9999987542 25678999999999999999999999998875 2443 34666777788999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 005628 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (687)
Q Consensus 446 ~~M~~~gv~pd---~~ty~~Li~~~~~~g~~ 473 (687)
+...+. .|+ ...|..+-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 999764 565 45677777777766665
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.67 E-value=0.00048 Score=72.97 Aligned_cols=234 Identities=10% Similarity=-0.018 Sum_probs=157.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCC
Q 005628 200 MCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g 274 (687)
.+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.+.|...+.-. .++....+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~ 175 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY----------HMKQTHVSMYHILQA----LDIYQNHP 175 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTST
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHH----HHHHHhCC
Confidence 4568899999999999988531 1133 345666666666 678888888877410 11111101
Q ss_pred -CC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCC-CCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 275 -MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 275 -~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~-~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
.. -..+|+.+=.. +...|++++|...|.+..+..- .++... .
T Consensus 176 ~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------------------~ 221 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDRF----------------------------I 221 (378)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------H
T ss_pred CchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------H
Confidence 11 12336666666 8899999999999987654210 011100 1
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCC
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----NPR 421 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd 421 (687)
..+++. |-..|...|++++|.+.|++... .. +....++..+-..|.+.|++++|...+++.....- ...
T Consensus 222 ~~~~~~-lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 222 AISLLN-IANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 123445 66788899999999999998876 33 23377889999999999999999999998876421 112
Q ss_pred cchHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 422 LRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...+..+-..|...++ +++|...++. .+..|+ ...+..|-..|.+.|+.++|...|++....
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345555556667788 7777777776 333333 345667888899999999999999887653
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.66 E-value=0.0014 Score=55.97 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=42.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+...+...|++++|.++|+++.... +.+..++..+...+.+.|++++|..+|+.+.... ..+..++..+...|...|+
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 3344455555555555555554432 1234444555555555555555555555544331 1233344444444444555
Q ss_pred hHHHHHHHHHHHH
Q 005628 438 VDKACSVEEHMLE 450 (687)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (687)
.++|...|+.+.+
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.65 E-value=0.00061 Score=79.09 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=131.9
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|+.|=.. +.+.|++++|...|++-.+. .|+. ...|+. |=
T Consensus 11 al~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~~-------------------------------~~a~~n-Lg 50 (723)
T 4gyw_A 11 SLNNLANI------KREQGNIEEAVRLYRKALEV--FPEF-------------------------------AAAHSN-LA 50 (723)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSCC-------------------------------HHHHHH-HH
T ss_pred HHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HH
Confidence 35555555 88999999999999987764 2432 234445 77
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~ 438 (687)
..|.+.|++++|.+.|++..+.. +-+...|+.|-..|.+.|++++|.+.|++..+. .|+ ...|+.+-..|.+.|++
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 88999999999999999988753 225789999999999999999999999988765 354 57899999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 439 DKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
++|.+.|++..+. .| +...|..|...|...|++++|.+.+++..+
T Consensus 128 ~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999998875 34 577899999999999999999888887654
No 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.0032 Score=68.19 Aligned_cols=300 Identities=8% Similarity=-0.062 Sum_probs=169.6
Q ss_pred HHhhhcCCCchhhhHHHhhh--cCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDE--KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHY 229 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~--~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-----G-i~p-d~~ty 229 (687)
.....|+.++|++.|+.-.+ +....+.......++|+.+-..|...|++++|...|++.... + ..+ ...+|
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 34467899999998876432 111112212234578999999999999999999999987642 1 112 24555
Q ss_pred HHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHH
Q 005628 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 230 n~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+.+-.++... ..++.++|...|. +.... .-.+...+..+... ...+...++.++|...|++
T Consensus 140 ~~~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 140 CEEGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHH
T ss_pred HHHHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHH
Confidence 5544444421 2457889999995 22221 11122223222222 0113456777888888877
Q ss_pred HHhcCCCCCc-cccchhhHhhccc---------cccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHH
Q 005628 310 KENLGQFSNG-HMKLNSQLLDGRS---------NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (687)
Q Consensus 310 M~~~g~~Pd~-~ty~~~~li~g~~---------~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (687)
-.+. .|+. ..+. .+...+. ..|...+..... ..| +...++. +-..|.+.|++++|.+.|++.
T Consensus 201 al~l--~p~~~~~~~--~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 201 AIRL--NPDNQYLKV--LLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRS-AAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHH--CSSCHHHHH--HHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHH-HHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhhc--CCcchHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHH-HHHHHHHcCchHHHHHHHHHH
Confidence 6654 3433 2222 1111111 122223333222 123 3334555 677788888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 379 CLDEVPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 379 ~~~gi~pd~~tyn~LI~~~~~-------------------~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
.+.. +-+..+|..+-..|.. .+..++|...|+...... ..+..+|..+-..|...|+.+
T Consensus 274 l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 274 LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence 7643 2234555555444322 123456666776665542 235567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~--ty~~Li~-~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.|+...+....|... .+..+-. .+...|+.++|+..|.+...-
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888887754333221 1222221 234677888888888776654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.56 E-value=0.0014 Score=67.52 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=99.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CcchHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-----d~~ty~~lI~~ 431 (687)
+-..+...|++++|++++.+-...|. .-+...+-.++..+.+.|+.+.|.++++.|.+. .| +-.+...|..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH
Confidence 66888999999999999999866554 235678889999999999999999999999875 46 35555666666
Q ss_pred HHh--CC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCN--NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~--~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.. .| +..+|+.+|+++.+. .|+..+-..|+.++.+.|++++|...++.+...
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332 34 899999999999765 366555566666899999999999999977653
No 88
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.51 E-value=0.0032 Score=64.65 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=79.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCc-chHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRL-RSYGP 427 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd~-~ty~~ 427 (687)
+-..|.. |++++|.+.|++.... |-.+ -..+|+.+-..|.+.|++++|...|++.... +..+.. ..|..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5556666 8999999888876542 1111 1467888889999999999999999987653 222222 25666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHH
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAGKGDRVYYL 479 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd------~~ty~~Li~~~~~~g~~~~A~~l 479 (687)
+...+...|+.++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 6777778899999999999987 3 332 12345555555 56777666554
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.50 E-value=0.0019 Score=55.09 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
...|..+...+...|++++|.++|+++.... ..+..+|..+...+.+.|+.++|..+|+++.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998763 2356788899999999999999999999998763 3467889999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.48 E-value=0.0014 Score=65.37 Aligned_cols=160 Identities=10% Similarity=-0.020 Sum_probs=118.6
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+.. |+.... ...+.. +-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA----------------------------ADAQFY-LARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch----------------------------HHHHHH-HHHHHHHhCcHHHHHH
Confidence 678899999999999988753 332110 112222 5577889999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCc-chH-----------------
Q 005628 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (687)
Q Consensus 374 lf~~M~~~gi-~pd-~~tyn~LI~~~~~--------~g~~~~A~~l~~~M~~~g~~Pd~-~ty----------------- 425 (687)
.|++..+... .|. ...+..+-.++.+ .|++++|...|++..... |+. ..+
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987532 122 4567777778888 999999999999988752 443 333
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEA----------GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~~----------g~~~~A~~ll~~M~~~ 486 (687)
-.+-..|.+.|+.++|...|+...+..-.. ....+..+..+|... |++++|...|++....
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344667889999999999999998753211 245677777778765 8899999999999987
No 91
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.46 E-value=0.0035 Score=56.76 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+...|++++|...|++..... +.+..+|..+...+...|++++|...+++..... ..+...|..+-..+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 5567788899999999999887643 3367888888899999999999999999887653 2345678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.++|.+.|++..+..- -+...+. .+...+.+.|++++|...+.....
T Consensus 97 ~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 97 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999998877532 2344443 333446778888888888876544
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.41 E-value=0.0025 Score=71.60 Aligned_cols=130 Identities=8% Similarity=-0.093 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-..|...|++++|.+.+++..+.. .-+...|..+-..|
T Consensus 25 ~~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 25 AWLM-LADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444 6678889999999999999998754 3357889999999999999999999999988763 23457888899999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~---g~~~~A~~ll~~M~~~ 486 (687)
.+.|+.++|.+.|++..+.. .-+...+..+...+... |+.++|...+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999988763 23577888999999999 9999999999999887
No 93
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.01 Score=64.16 Aligned_cols=275 Identities=9% Similarity=-0.015 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G--IKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-----G--i~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~ 263 (687)
..||.|=..+...|+.++|++.|++..+. + ..| ...+|+.+-..|. ..|+.++|...+.-.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka- 120 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV- 120 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH-
Confidence 78999989999999999999999987632 1 123 4678999988888 789999998887411
Q ss_pred cccccccccC-C---CCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcc--c--ccc
Q 005628 264 MNSTELGDSR-D---MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR--S--NLE 335 (687)
Q Consensus 264 ~~s~em~~~~-g---~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~--~--~~a 335 (687)
.++.... + .....+|+.+-.+ ......+++++|...|++-.+. .|+...+.....+-.+ . ..+
T Consensus 121 ---~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 121 ---KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp ---HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred ---HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH
Confidence 1121110 1 1111123222112 0022346789999999987765 4665433211111111 1 222
Q ss_pred CCCcchhcc-cCCCCCh-hhhHHHHHHH----HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005628 336 RGPDDQSRK-KDWSIDN-QDADEIRLSE----DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (687)
Q Consensus 336 ~~~~~~m~~-~g~~pd~-~tyn~~lI~~----~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l 409 (687)
...+..... ..+.|+. ..+.. +-.. +...++.++|.++|++..... +.+..++..+-..|.+.|++++|...
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~-l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVL-LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHH-HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 222222111 1223433 33333 3222 334567889999999887653 34677899999999999999999999
Q ss_pred HHHHHHcCCCCCc-chHHHHHHHHHh-------------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005628 410 VKRMKSLGINPRL-RSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (687)
Q Consensus 410 ~~~M~~~g~~Pd~-~ty~~lI~~~~~-------------------~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (687)
+++..+. .|+. .+|..+-..|.. .+..+.|...|+...+.. ..+...|..+-..|..
T Consensus 270 ~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 270 LKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 9998765 3543 344444333322 123566777777766543 2244567788889999
Q ss_pred cCChHHHHHHHHHHHhccCCCChh
Q 005628 470 AGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.|++++|...|++.... .+.+.
T Consensus 347 ~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp TTCHHHHHHHHHHHHHS--CCCHH
T ss_pred hccHHHHHHHHHHHHhc--CCCCh
Confidence 99999999999998877 55554
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.38 E-value=0.0036 Score=72.62 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=112.8
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPAL 429 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI 429 (687)
...|+. |=..|.+.|++++|.+.|++..+.. +-+..+|+.|-..|.+.|++++|++.|++..+. .|+ ...|..+-
T Consensus 9 a~al~n-LG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNN-LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345677 7788999999999999999988753 225788999999999999999999999998765 354 57899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|...|+.++|.+.|++..+.. .-+...|+.|-..|.+.|++++|+..|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753 225788999999999999999999999998876
No 95
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.32 E-value=0.0048 Score=52.92 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=73.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+...|++++|.+.|++..... +.+...|..+...+...|++++|.+.++...... ..+...|..+-..|.+.|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 5566667777777877777776542 2356677777777777777777777777766542 2234566666667777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
.++|...|+...+.. ..+...+..+...+.+.|+
T Consensus 96 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 HVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777766542 1245555666666655554
No 96
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.30 E-value=0.00073 Score=71.57 Aligned_cols=235 Identities=10% Similarity=-0.067 Sum_probs=159.0
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~--Gi~---p-d~~tyn~ 231 (687)
.....++.++|.+.|+.....- +..+..+ ...+|..+-..|...|+++.|+..|.+.... ... | ...+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3446789999999999975421 1111122 2467888889999999999999999998743 111 1 1345666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHH
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+-..|. ..|+.++|...|.-. -++....+-. -..+|+.|-.. +...|++++|...|++
T Consensus 190 lg~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 190 FATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHH
Confidence 667777 789999999988511 1121111111 11346666666 8899999999999987
Q ss_pred HHhc----CCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----
Q 005628 310 KENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (687)
Q Consensus 310 M~~~----g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (687)
-.+. +-.|+. ..++.. +-..|.+.|++++|.+.|++....
T Consensus 250 al~~~~~~~~~~~~-------------------------------~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 250 AIAVFEESNILPSL-------------------------------PQAYFL-ITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHHHHHTTCGGGH-------------------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhH-------------------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 7652 111111 123444 778889999999999999987642
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 382 EVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 382 gi~pd~~tyn~LI~~~~~~g~---~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+-+.....++.|-..+...|+ +++|+.+++.. +..|+. ..+..+-..|...|+.++|.+.|+...+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112223346777778888888 77788777765 333433 4677788899999999999999998754
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.28 E-value=0.0055 Score=59.63 Aligned_cols=158 Identities=10% Similarity=0.026 Sum_probs=111.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|+++.+.. |+.... ...+.. +-..|.+.|++++|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS----------------------------QQVQLD-LIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 667899999999999988752 322100 011222 6678889999999999
Q ss_pred HHHHHHhCCCC-CCH-HHHHHHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCcc-hH-------
Q 005628 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLR-SY------- 425 (687)
Q Consensus 374 lf~~M~~~gi~-pd~-~tyn~LI~~~~~------------------~g~~~~A~~l~~~M~~~g~~Pd~~-ty------- 425 (687)
.|++..+.... +.. ..+-.+-..+.+ .|+.++|...|+.+.+. .|+.. .+
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999875422 221 133333333333 57899999999998865 35543 22
Q ss_pred ----------HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 ----------GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ----------~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.+-..|.+.|+.++|...|+.+.+.- |+ ...+..+..+|.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 123446788999999999999998753 43 246788899999999999999999998887
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.25 E-value=0.0018 Score=60.38 Aligned_cols=154 Identities=6% Similarity=0.045 Sum_probs=104.2
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...+.. +-..|.+.|++++|..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~--~P~~-------------------------------~~a~~~-la~~~~~~g~~~~A~~ 61 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDE--LQSR-------------------------------GDVKLA-KADCLLETKQFELAQE 61 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHH--HHTS-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCc-------------------------------HHHHHH-HHHHHHHCCCHHHHHH
Confidence 66778888888888765432 1221 222333 6677888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~-~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|++..... |+...+..+... +...+...+|...|+...+. .|+ ...+..+-..+...|+.++|...|+++.+.
T Consensus 62 ~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 62 LLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 998876543 344433322211 12223334567777777654 354 577788888888999999999999988876
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 452 GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 452 gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.-.+ +...+..|...|...|+.++|...|++...
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4332 356788888889999999999888887654
No 99
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.21 E-value=0.01 Score=60.24 Aligned_cols=163 Identities=6% Similarity=-0.096 Sum_probs=118.2
Q ss_pred cccCCChhhHHHHHHHHHhcC-CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g-~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
+...|++++|..++++..+.. ..|+...+ ...|.. +...+...+++++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~----------------------------~~~~~~-l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQF----------------------------LQWQYY-VAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHH----------------------------HHHHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHH----------------------------HHHHHH-HHHHHHcccCHHHHH
Confidence 778899999999999877632 11111000 001222 556677788999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCc-chHHHHHHHHHhCCChHHH
Q 005628 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRL-RSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 373 ~lf~~M~~~gi~-pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~-~ty~~lI~~~~~~g~~~~A 441 (687)
+.|++....... +| ..+|+.+-..|...|++++|...|++..+. +..+.. .+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999874222 33 347999999999999999999999988741 222222 4788899999999999999
Q ss_pred HHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 005628 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (687)
Q Consensus 442 ~~l~~~M~~----~gv~pd-~~ty~~Li~~~~~~g~-~~~A~~ll~~M~~ 485 (687)
.+.+++..+ .+..+. ...|..+-.+|.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987654 233333 6788888889999995 5999998887654
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.19 E-value=0.0017 Score=66.24 Aligned_cols=164 Identities=7% Similarity=-0.089 Sum_probs=119.5
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
|...|++++|...|.+-...... .|-.++ ..+|+. +-..|.+.|++++|.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~a~~~~~-lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKK----------------------------AGNEDEAGNTYVE-AYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH----------------------------hCCHHHHHHHHHH-HHHHHHHCCCHHHHH
Confidence 77789999999998876542100 000011 235556 778889999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhCCChHHH
Q 005628 373 EIYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 373 ~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd-~~ty~~lI~~~~~~g~~~~A 441 (687)
..|++.... |-.. -..+|+.+-..|... |++++|+..|++.... +-.+. ..+|+.+-..|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999877642 2111 145788899999996 9999999999987653 11111 35688889999999999999
Q ss_pred HHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~------~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|+...+....... ..|..+..++...|++++|...|++....
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999886433222 25677888899999999999999987664
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.18 E-value=0.0038 Score=64.13 Aligned_cols=131 Identities=12% Similarity=0.049 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-Cc
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RL 422 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~ 422 (687)
+|+. +-..|.+.|++++|.+.|++.... |-.. -..+|+.+-..|.. |++++|+..|++.... |-.+ -.
T Consensus 78 ~~~~-lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQ-AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHH-HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 4445 667788889999999888876532 2111 13577888888888 9999999999886643 1111 14
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+|+.+-..|.+.|++++|.+.|++..+. +..+.. ..|..+...+...|++++|...|++.. .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 67888889999999999999999988753 222222 266677777788899999999999988 5
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.17 E-value=0.0054 Score=53.01 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+.+.|++++|.+.|++..... +.+...|..+...|...|++++|...+++..+.. ..+...|..+-..+.+.|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4455556666666666666655432 1245555555566666666666666666555431 1233445555555555566
Q ss_pred hHHHHHHHHHHHH
Q 005628 438 VDKACSVEEHMLE 450 (687)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (687)
+++|.+.|++..+
T Consensus 100 ~~~A~~~~~~~~~ 112 (133)
T 2lni_A 100 YTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555544
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.17 E-value=0.023 Score=55.15 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
.+...|+.++|...|++..+.. |+. ..+ -.+-..|.+.|++++|...|+.+.+. .|+.
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred hhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 3445788999999999998753 332 222 23445678899999999999998875 2543
Q ss_pred ----chHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 423 ----RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 423 ----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 467888899999999999999999988764
No 104
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.11 E-value=0.0036 Score=58.96 Aligned_cols=129 Identities=14% Similarity=-0.010 Sum_probs=96.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC--CcchHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRSYG 426 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P--d~~ty~ 426 (687)
+-..|...|++++|.+.|++... .+..| ...+++.+-..|...|++++|...+++.... +-.| ....+.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 66778889999999999998775 22222 3467888888999999999999999886643 2111 235577
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+-..+...|++++|...+++..+. +-. .-..++..+-..+...|++++|...+++....
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7888899999999999999887643 211 11234677888889999999999999877654
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.11 E-value=0.015 Score=55.18 Aligned_cols=121 Identities=7% Similarity=-0.088 Sum_probs=96.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++. +.|+ ...|.. +-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~~--------------------------------~~~~~~-lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDPH--------------------------------SRICFN-IGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCC--------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCCC--------------------------------hHHHHH-HHHHHHHcCCHHHHHH
Confidence 66789999999988754 2232 234445 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--------------CC-CcchHHHHHHHHHhCCCh
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--------------NP-RLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~--------------~P-d~~ty~~lI~~~~~~g~~ 438 (687)
.|++..... +.+...|..+-..|...|++++|...|+......- .| ....|..+-..|.+.|+.
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 999988754 34678899999999999999999999999887521 11 126788888899999999
Q ss_pred HHHHHHHHHHHHCC
Q 005628 439 DKACSVEEHMLEHG 452 (687)
Q Consensus 439 ~~A~~l~~~M~~~g 452 (687)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998753
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.11 E-value=0.011 Score=59.89 Aligned_cols=163 Identities=6% Similarity=-0.073 Sum_probs=116.6
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...+.+..+..-..+ .... ....+.. +...+...|++++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~-~~~~--------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHP-EFQQ--------------------------FLQWQYY-VAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCH-HHHH--------------------------HHHHHHH-HHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCCh-hHHH--------------------------HHHHHHH-HHHHHhcCCCHHHHHH
Confidence 7788999999999987766421110 0000 0011222 4456778899999999
Q ss_pred HHHHHHhCCC---CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-----cchHHHHHHHHHhCCChHHHH
Q 005628 374 IYEKMCLDEV---PMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 374 lf~~M~~~gi---~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd-----~~ty~~lI~~~~~~g~~~~A~ 442 (687)
.|++...... .+. ..+|+.+-..|...|++++|...|++.... ...|+ ..+|..+-..|.+.|+.++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 9998875321 222 458999999999999999999999987632 11122 258888999999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 005628 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (687)
Q Consensus 443 ~l~~~M~~~----gv~pd-~~ty~~Li~~~~~~g~~~~A-~~ll~~M~ 484 (687)
+.+++..+. +.... ..+|..+-..|.+.|+.++| ...+++-.
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999987643 22222 67788889999999999999 77677644
No 107
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.10 E-value=0.0047 Score=57.23 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=95.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhCCCh--
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~~~g~~-- 438 (687)
+...|++++|.+.|++..... +.+...|..+-..|...|++++|...|+...... ..+...|..+-.. +...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 446678888999998877653 3467889999999999999999999999987652 1245566666667 7789998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++|...|+...+.. .-+...|..+-..|...|++++|...|++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998763 235778888889999999999999999998887
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.08 E-value=0.0075 Score=62.94 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
.|.. +-..|.+.|++++|.+.|++......... ...|..+-.+|.+.|++++|+..++...+..
T Consensus 149 ~~~~-~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 149 IVKE-RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444 66788899999999999999887542221 5899999999999999999999999988763
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 005628 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV-YYLLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A-~~ll~~M~~~ 486 (687)
..+...|..+-.+|...|++++|...|+...+.. .-+...+..|-..+.+.|+.++| ..++..|...
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788888899999999999999999988753 23567888888899999999988 4566666554
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.07 E-value=0.01 Score=57.05 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=114.1
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+. .|+....- ...+... ........++. +-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~~------------~~~~~~~~~~~-lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIAL--NIDRTEMY---YWTNVDK------------NSEISSKLATE-LALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHHHH---HHHHSCT------------TSHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHH---HHhhhcc------------hhhhhHHHHHH-HHHHHHHCCCHHHHHH
Confidence 56789999999999988765 24322110 0001000 00001111222 5567889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC--hHHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~ 450 (687)
.|++..+.. +-+...|..+-..|...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...++..
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-- 150 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-- 150 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--
Confidence 999998754 236789999999999999999999999998875 354 5667777777766554 33445555544
Q ss_pred CCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhH
Q 005628 451 HGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (687)
Q Consensus 451 ~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t 494 (687)
+.|+...| ..+-.++...|++++|...|++.... .|++..
T Consensus 151 --~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 151 --SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred --hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 34554433 33344456688999999999999887 555443
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.06 E-value=0.013 Score=50.12 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPE----EPELEAL 463 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd----~~ty~~L 463 (687)
|..+...+...|++++|...|+...... ..+...|..+...|...|++++|...++...+..- .++ ...|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444444555555555555444331 12333444444445555555555555554443211 111 4445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..|.+.|++++|...|++....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555666666666666655554
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.04 E-value=0.0031 Score=64.27 Aligned_cols=122 Identities=7% Similarity=0.010 Sum_probs=56.6
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCChH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVD 439 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~ 439 (687)
.+...|++++|...|++..... +-+...+..|...+.+.|++++|..+++..... .|+........ ..+...++.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 3445555555555555554432 113444555555555555555555555544332 23322111111 1133444455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.++...+.. +.+...+..|-..|...|++++|...|.+....
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555555544432 123444555555555555555555555555554
No 112
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.03 E-value=0.0051 Score=52.87 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC----cchHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPR----LRSYGP 427 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd----~~ty~~ 427 (687)
|.. +-..+...|++++|...|++..... +.+...|..+...|...|++++|...++...... ..++ ..+|..
T Consensus 7 ~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKE-LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444 6678889999999999999988754 3467889999999999999999999999987652 1122 667888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
+-..+.+.|++++|.+.|+...+. .|+...+..+-..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 889999999999999999999885 3566555555443
No 113
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.02 E-value=0.0044 Score=51.69 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVE 469 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~ 469 (687)
.+...+...|++++|...|+...+.. ..+...|..+-..+...|++++|.+.|+...+.. .. +...|..+-..|.+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 33334444444444444444443321 1123334444444445555555555555444431 11 24445555555555
Q ss_pred c-CChHHHHHHHHHHHhc
Q 005628 470 A-GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~-g~~~~A~~ll~~M~~~ 486 (687)
. |++++|.+.|++....
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CSSCSHHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHhhc
Confidence 5 5555555555555544
No 114
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.02 E-value=0.018 Score=48.25 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
..|..+...+...|++++|...|+...... +.+...|..+...+...|+.++|...++...+.. ..+...|..+...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555556666666666666555431 1234455555555666666666666666655532 12455556666666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 005628 468 VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~ 486 (687)
...|++++|...+++....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665554
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.99 E-value=0.0092 Score=51.52 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+.+...|..+...+...|++++|...|++..... ..+...|..+-..|...|+.++|.+.+++..+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4567788999999999999999999999987652 2356788888889999999999999999988753 3367888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..|.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 116
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.95 E-value=0.0028 Score=66.97 Aligned_cols=234 Identities=9% Similarity=-0.090 Sum_probs=156.0
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GI---KL-GQYHYNVL 232 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~--Gi---~p-d~~tyn~L 232 (687)
....++.++|.+.|+...... +..+..| ...+|..+-..|...|+++.|+..+.+.... .. .+ ...+++.+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKEL--PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 346789999999999875421 1111112 2357888888999999999999999998743 11 11 13456666
Q ss_pred HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
=..|. ..|+.++|...|.-. -++....+-. -..+|+.|=.. +...|++++|...|.+-
T Consensus 189 g~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 189 AGNYD----------DFKHYDKALPHLEAA----LELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred HHHHH----------HhCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 66677 789999999988511 1111111111 12335666666 88899999999999876
Q ss_pred HhcC---CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CC
Q 005628 311 ENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV 383 (687)
Q Consensus 311 ~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi 383 (687)
.... -.|+ ...++.. +-..|.+.|++++|.+.|++..+. +-
T Consensus 249 l~~~~~~~~~~-------------------------------~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 249 AKVSREKVPDL-------------------------------LPKVLFG-LSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHCGGG-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHhhCChh-------------------------------HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6520 0111 1123344 678899999999999999988763 22
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~---~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+.....++.+-..+...++ +++|+..++. .+..|+. ..+..+-..|...|+.++|.+.|+...+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234556666667777788 7777777775 3333333 4566778889999999999999988753
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.90 E-value=0.025 Score=48.25 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
+...|..+...+...|++++|...|+...... ..+...|..+...+...|+.++|.+.++...+.. ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888889999999999999999988753 2356788888899999999999999999988753 335788889999
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005628 466 VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.|++++|...|++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998877
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.87 E-value=0.011 Score=59.92 Aligned_cols=129 Identities=9% Similarity=0.004 Sum_probs=98.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCc----chHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRL----RSYGP 427 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~----~ty~~ 427 (687)
.+..+...|++++|.+++++..... ..|+. ..|..+...+...|++++|...|++....... ++. .+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3678889999999999999988743 22332 23445666677778999999999998874322 232 36899
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEH-----GVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~-----gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+-..|...|+.++|...|+...+. +..+. ..+|..+-..|.+.|++++|...+++....
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999998741 22222 237888999999999999999999877643
No 119
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.86 E-value=0.014 Score=48.50 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CcchHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALS 430 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P---d~~ty~~lI~ 430 (687)
|.. +-..+.+.|++++|...|++..+.. +.+...|..+-..+...|++++|...|++..+.. | +...|..+-.
T Consensus 9 ~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYL-EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGG-HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHH-HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 344 6677889999999999999988753 3467889999999999999999999999988763 4 4678888889
Q ss_pred HHHhC-CChHHHHHHHHHHHHCC
Q 005628 431 VFCNN-GDVDKACSVEEHMLEHG 452 (687)
Q Consensus 431 ~~~~~-g~~~~A~~l~~~M~~~g 452 (687)
.+.+. |+.++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999988754
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.86 E-value=0.069 Score=53.92 Aligned_cols=96 Identities=5% Similarity=-0.069 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCC-C
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCL---D-EVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INP-R 421 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~-gi~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g----~~P-d 421 (687)
+|+. +-..|...|++++|.+.|++..+ . +-.+ ...+|+.+-..|.+.|++++|...+++..... ... -
T Consensus 157 ~~~~-lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENA-IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4555 77888999999999999998862 1 1111 12688999999999999999999999866431 111 1
Q ss_pred cchHHHHHHHHHhCCChHHH-HHHHHHHH
Q 005628 422 LRSYGPALSVFCNNGDVDKA-CSVEEHML 449 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A-~~l~~~M~ 449 (687)
..+|..+-..|.+.|+.++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46788888899999999999 77677653
No 121
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.84 E-value=0.022 Score=49.69 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
.+...|..+-..+...|++++|...|+...... ..+...|..+-..+...|++++|...++...+.. .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356667777777777777777777777766542 1234566777777777777777777777776643 22566777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777888888888877776654
No 122
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.83 E-value=0.039 Score=54.47 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=98.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~ 430 (687)
+-..+.+.|++++|.+.|+++...... + ...+..+-..|.+.|++++|...|+...... |+ ...|..+-.
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCchhHHHHHHHHH
Confidence 456778999999999999999875421 2 5778888899999999999999999988752 32 244566666
Q ss_pred HHHh--------CCChHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 005628 431 VFCN--------NGDVDKACSVEEHMLEHGVYPE-EPEL-----------------EALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 431 ~~~~--------~g~~~~A~~l~~~M~~~gv~pd-~~ty-----------------~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
++.+ .|+.++|...|++..+.. |+ ...+ -.+-..|.+.|++++|...|++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777 999999999999998753 32 2222 345677889999999999999998
Q ss_pred hc
Q 005628 485 TS 486 (687)
Q Consensus 485 ~~ 486 (687)
..
T Consensus 176 ~~ 177 (261)
T 3qky_A 176 DA 177 (261)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 123
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.81 E-value=0.0073 Score=54.84 Aligned_cols=133 Identities=10% Similarity=0.022 Sum_probs=100.2
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
.+...|++++|++.|...... .| +...+-.|-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 345678999999999887653 23 23456678889999999999999999988753 225678888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhccCCC-ChhHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKLRTSVRKV-SPSTADVIAK 500 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~-ll~~M~~~~~g~-~p~t~~~I~~ 500 (687)
+|...|+...+. .| +...|..|-..|.+.|+.++|.+ ++++..+. .| .|..|.....
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 999999999875 34 57788899999999999987665 45766654 22 2335555433
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.76 E-value=0.061 Score=54.45 Aligned_cols=164 Identities=9% Similarity=-0.017 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..+..+-..+.+.|++++|+.+|++..... +-+...+..|-..+. ..|+.++|...+. +...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~----------~~g~~~~A~~~l~-------~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLI----------ALNRSEDAEAVLX-------TIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHH----------HTTCHHHHHHHHT-------TSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH----------HCCCHHHHHHHHH-------hCch
Confidence 556667778889999999999999998652 224556666666666 6677777777774 1111
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCCh
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (687)
. .|+..
T Consensus 180 ~-------------------------------------------~p~~~------------------------------- 185 (287)
T 3qou_A 180 Q-------------------------------------------DQDTR------------------------------- 185 (287)
T ss_dssp G-------------------------------------------GCSHH-------------------------------
T ss_pred h-------------------------------------------hcchH-------------------------------
Confidence 0 11111
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCcchHHHHHH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSYGPALS 430 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~~ty~~lI~ 430 (687)
.........+...++.++|.+.|++..... +.+...+..+-..|...|++++|...|.+..+..-. .+...+..|..
T Consensus 186 -~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 186 -YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 001112223455666777888888777653 346778888888888899999999988888775311 12567888888
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 005628 431 VFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~ 449 (687)
.|...|+.++|...|++-.
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 8888888888877776643
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.75 E-value=0.022 Score=63.77 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=86.5
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+. .| +...|..+-..|...|+.++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 367889999999887643 235788999999999999999999999998765 34 46788888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|++..+.. .-+...|..+-..|.+.|++++|...|++..+.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988763 235788999999999999999999999998887
No 126
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.74 E-value=0.069 Score=61.22 Aligned_cols=139 Identities=9% Similarity=-0.022 Sum_probs=103.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
.+...-+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+...+. +.-+..-+...+......
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 556666788999999999999876 3 3344444444444322 35699999999988876 323444556888888889
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHH
Q 005628 436 GDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~ 500 (687)
|+.+.|..+|+........+ ....|...++.-.+.|+.+.+..+..+|... .+..+...++..
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 99999999999988764322 3568999999999999999999999999998 555555544333
No 127
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.043 Score=48.20 Aligned_cols=90 Identities=10% Similarity=-0.019 Sum_probs=44.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
+-..+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|...++...... ..+...|..+-..|.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 445555556666666666655543 233 3445555555555555555555555544431 112334444444445
Q ss_pred hCCChHHHHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLE 450 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (687)
..|+.++|...|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.73 E-value=0.041 Score=45.93 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.+.. +...+...|++++|.+.|++..... +.+...|..+...+...|++++|...+++..... ..+...|..+...+
T Consensus 6 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKE-KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444 6678889999999999999988753 3367889999999999999999999999988763 23567788888999
Q ss_pred HhCCChHHHHHHHHHHHHCC
Q 005628 433 CNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g 452 (687)
...|+.++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987653
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.73 E-value=0.027 Score=51.47 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=42.8
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|.+.|+.+
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 44445555555555555554432 1234445555555555555555555555544431 112344444444555555555
Q ss_pred HHHHHHHHHHH
Q 005628 440 KACSVEEHMLE 450 (687)
Q Consensus 440 ~A~~l~~~M~~ 450 (687)
+|.+.|+...+
T Consensus 122 eA~~~~~~al~ 132 (151)
T 3gyz_A 122 KAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 130
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.71 E-value=0.0071 Score=53.86 Aligned_cols=133 Identities=14% Similarity=-0.005 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-Cc
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RL 422 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~ 422 (687)
++.. +-..|...|++++|.+.|++....... ++ ..++..+-..+...|++++|.+.+++.... +-.+ ..
T Consensus 11 ~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGN-LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3444 567788899999999999887653111 12 247888888999999999999999987643 1111 14
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|..+-..+...|+.++|.+.+++..+. +-.+ ....+..+-..|...|++++|...+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56777888889999999999999887643 2111 2456777888889999999999999876653
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.70 E-value=0.019 Score=52.41 Aligned_cols=103 Identities=4% Similarity=-0.104 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
...+..+-..+.+.|++++|...|+...... +-+...|..+-.+|...|++++|.+.|+...+..- -+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 3467777788999999999999999988763 23567788888999999999999999999987542 256788889999
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|.+.|++++|...|++.... .+.+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999988 55544
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.68 E-value=0.017 Score=50.75 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|+..|+...+.. +.+...|..+-.+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 45556666666666666655432 2345566666666666666666666666655432 123345555555566666666
Q ss_pred HHHHHHHHHHH
Q 005628 440 KACSVEEHMLE 450 (687)
Q Consensus 440 ~A~~l~~~M~~ 450 (687)
+|.+.|+...+
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.64 E-value=0.0095 Score=55.09 Aligned_cols=123 Identities=7% Similarity=-0.008 Sum_probs=91.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|.+..... |+. ...|.. +-..|...|++++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~-------------------------------~~~~~~-lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQN-------------------------------SEQWAL-LGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCc-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 677888999998888776542 221 223334 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~-~~~~g~~--~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|++..... +.+...|..+... +...|++ ++|...|+...... .-+...|..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988753 2367788888888 7789998 99999999988763 22456788888899999999999999999887
Q ss_pred CC
Q 005628 451 HG 452 (687)
Q Consensus 451 ~g 452 (687)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 53
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.64 E-value=0.053 Score=48.69 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
..|..+-..+...|++++|...|+...... ..+...|..+...+...|++++|.+.++...+.. ..+...|..+-..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 457777788899999999999999987752 2356788888899999999999999999988763 34677888999999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 005628 468 VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~ 486 (687)
...|++++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999999887
No 135
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.60 E-value=0.016 Score=66.73 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=105.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g 436 (687)
+-..|...|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. | +...|..+-..|.+.|
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcC
Confidence 5677889999999999999998753 2367889999999999999999999999987753 4 5677888888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++++ .+.|+...+.. .-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 516 ~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 9999 99999988753 235678899999999999999999999987665
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.57 E-value=0.033 Score=48.54 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=81.8
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
...|.. +-..+.+.|++++|...|++..... +.+...|..+-..+...|++++|...++...... +-+...|..+-.
T Consensus 9 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 444555 6678889999999999999988754 3467889999999999999999999999988763 235678888889
Q ss_pred HHHhCCChHHHHHHHHHHHHC
Q 005628 431 VFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|...|++++|...|+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.57 E-value=0.027 Score=51.40 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
...|..+-..+.+.|++++|...|++..... .-+...|..+-..|.+.|++++|...|+...+.. .-+...|..+-..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777766542 1245566667777777777777777777776653 2246677777777
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|++++|...|++....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77888888888887777665
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.57 E-value=0.028 Score=50.09 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=41.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+.+.|++++|...|++..... +.+...|..+-..|.+.|++++|...|+...... +-+...|..+-.+|...|+.+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 34445555555555555544432 1234444455555555555555555555544431 112233444444445555555
Q ss_pred HHHHHHHHHH
Q 005628 440 KACSVEEHML 449 (687)
Q Consensus 440 ~A~~l~~~M~ 449 (687)
+|.+.|+...
T Consensus 104 ~A~~~~~~al 113 (142)
T 2xcb_A 104 GAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.54 E-value=0.068 Score=46.75 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
.|..+=..|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+...+.. ..+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556667889999999999999987653 2356788889999999999999999999988753 235778999999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 140
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.54 E-value=0.0085 Score=54.38 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (687)
+=..|.+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|++++|...|+...+. .|+ ...|..+-..|.+.|
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 5578899999999999999988753 236789999999999999999999999998875 354 567888888999999
Q ss_pred ChHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 005628 437 DVDKACSV-EEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (687)
Q Consensus 437 ~~~~A~~l-~~~M~~~gv~p-d~~ty~~Li~~~~~~g~ 472 (687)
+.++|.+. ++...+. .| +...|...-..+...|+
T Consensus 114 ~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99876665 4766653 34 45666665555555553
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.53 E-value=0.029 Score=50.74 Aligned_cols=96 Identities=11% Similarity=-0.082 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
.+..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|+...+.. +-+...|..+-.+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33444444555555555555555544331 1133344444445555555555555555554432 113344444555555
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|++++|...|++....
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.52 E-value=0.022 Score=57.73 Aligned_cols=126 Identities=11% Similarity=-0.097 Sum_probs=96.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~ 435 (687)
....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+=.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4567888999999999999998754 554455666668899999999999998443321 111 23556666788999
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|++++|+..|++.......|. ......+-.++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999885544365 234556666778999999999999999998
No 143
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.52 E-value=0.27 Score=46.96 Aligned_cols=86 Identities=15% Similarity=0.004 Sum_probs=59.0
Q ss_pred hccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC-C--
Q 005628 365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-G-- 436 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~-g-- 436 (687)
.+++++|.+.|++..+.|.. -+...+..|-..|.. .++.++|+..|+.-.+. ..+...+..|-..|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCC
Confidence 66888899988888876532 125677777777777 77888888888887765 12344555555555543 2
Q ss_pred ---ChHHHHHHHHHHHHCC
Q 005628 437 ---DVDKACSVEEHMLEHG 452 (687)
Q Consensus 437 ---~~~~A~~l~~~M~~~g 452 (687)
+.++|.+.|+...+.|
T Consensus 180 ~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 7788888887776665
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.061 Score=47.19 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (687)
.+...+..+...+...|++++|...|++..+. .|+ ...|..+-..|...|++++|.+.++...+.. ..+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46778888899999999999999999998765 466 6788888899999999999999999988753 2367788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+-.+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88999999999999999999999877
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.50 E-value=0.043 Score=48.02 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=29.7
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~ 414 (687)
=..|.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|++.++...
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555566666666666555432 1234555555555555666666655555544
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.04 Score=47.53 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444455556666666666666555432 1234555555566666666666666666655532 123455566666666
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|++++|...|++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666665554
No 147
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.43 E-value=0.059 Score=49.81 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+|...|++..+.. +-+...+..+-..+...|++++|...|++..+..-.+ +...+..+...|...|+.++|...|+..
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4677777766542 2257888888889999999999999999887653211 2457888888899999999999888876
Q ss_pred H
Q 005628 449 L 449 (687)
Q Consensus 449 ~ 449 (687)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.43 E-value=0.035 Score=49.43 Aligned_cols=97 Identities=14% Similarity=-0.045 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
..+..+-..+.+.|++++|...|+...... +.+...|..+-..|.+.|++++|...|+...+.. +-+...|..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 455666778889999999999999988753 2355677788888999999999999999998764 23566788888999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 005628 468 VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~ 486 (687)
...|++++|...|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998776
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.42 E-value=0.042 Score=51.86 Aligned_cols=118 Identities=8% Similarity=-0.114 Sum_probs=73.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCC-C---C-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-M---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-p---d-----------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
+-..+.+.|++++|.+.|++....... | . ...|..+-.+|.+.|++++|+..++...... ..+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 445667778888888888877763211 1 1 2566777777777777777777777766542 2244
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (687)
..|..+-.+|...|++++|.+.|+...+.. .-+...+..+-..+...++.+++.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777777766542 124455555555555555444444
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.41 E-value=0.096 Score=44.92 Aligned_cols=89 Identities=16% Similarity=0.038 Sum_probs=54.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLR 465 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~ 465 (687)
-..+...|++++|...|+...... |+.. .+..+-..+.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344556666666666666665532 3322 45555566666777777777777666542 22 445566666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005628 466 VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.|++++|...|++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777777665
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.39 E-value=0.036 Score=50.08 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=82.6
Q ss_pred CCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 348 SIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 348 ~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
.|+. ..+.. +-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|+...... +-+...|.
T Consensus 17 ~p~~~~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~ 93 (148)
T 2vgx_A 17 SSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPF 93 (148)
T ss_dssp CHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred CHhhHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 3443 34444 6678889999999999999988753 3478889999999999999999999999988753 23567788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+-.+|...|+.++|.+.|+...+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999999988764
No 152
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.39 E-value=0.13 Score=48.97 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=86.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+.. |+. ...|.. +-..|...|++++|.+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~--p~~-------------------------------~~~~~~-lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA--PNN-------------------------------VDCLEA-CAEMQVCRGQEKDALR 109 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTC-------------------------------HHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCC-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 677889999999988877642 332 223334 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~--~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|++..+.. +-+..+|..+-..|...|+. ..+...++... ...|....+..+-.++...|+.++|...|+...+
T Consensus 110 ~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~- 185 (208)
T 3urz_A 110 MYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL- 185 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence 999998753 23577888888887666543 34555555432 1222222233333345567899999999999876
Q ss_pred CCCCCHHHHHHHH
Q 005628 452 GVYPEEPELEALL 464 (687)
Q Consensus 452 gv~pd~~ty~~Li 464 (687)
+.|+......|.
T Consensus 186 -l~P~~~~~~~l~ 197 (208)
T 3urz_A 186 -RFPSTEAQKTLD 197 (208)
T ss_dssp -TSCCHHHHHHHH
T ss_pred -hCCCHHHHHHHH
Confidence 568866554443
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.35 E-value=0.019 Score=53.81 Aligned_cols=123 Identities=12% Similarity=-0.033 Sum_probs=90.8
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhCCC
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGD 437 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~ty~~lI~~~~~~g~ 437 (687)
...|++++|.++++.+.. .......++..+-..+...|++++|...+++.... |..| ...+|..+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999996655543 22235678999999999999999999999987652 2222 34677888889999999
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEH----GVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++|.+.+++..+. +-.| ....+..+-..+...|++++|...+++....
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999887553 2121 2456778888889999999999999987643
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.067 Score=46.08 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=78.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-..+...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 5567889999999999999988753 3467899999999999999999999999988763 2245678888889999999
Q ss_pred hHHHHHHHHHHHHC
Q 005628 438 VDKACSVEEHMLEH 451 (687)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (687)
.++|.+.|+...+.
T Consensus 88 ~~~A~~~~~~al~~ 101 (126)
T 3upv_A 88 YASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.33 E-value=0.059 Score=49.02 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|+..|+...... .-+...|..+-..|
T Consensus 13 ~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKS-EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444 6678889999999999999988754 2378899999999999999999999999988763 23467888899999
Q ss_pred HhCCChHHHHHHHHHHHHC
Q 005628 433 CNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~ 451 (687)
...|++++|.+.|+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 156
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.24 E-value=0.12 Score=56.05 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC-----C
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-A--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-----D 437 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~-~--~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-----~ 437 (687)
++.++|.+.|++.. .| +...+..|-.. + ...++.++|++.|++..+.| +...+..|=..|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 57788888888776 33 34455555444 2 34778888888888877766 4445555555554 44 7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+... .| +...+..|-..|.. ..+.++|...|++-.+.
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 888888887766 32 45555555555544 23777888888877766
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.20 E-value=0.058 Score=47.19 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELE 461 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd----~~ty~ 461 (687)
..+.-|=..+.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|+..++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456666678899999999999999987752 2345778888899999999999999999886532 2222 24677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHH
Q 005628 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (687)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~ 499 (687)
.+-.++...|++++|++.|++-... .+.|++...|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 7888899999999999999998876 66777655544
No 158
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.16 E-value=0.21 Score=47.75 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=97.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g----~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
|=..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|++.|+...+.| +...+..|=..|.
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 5566777899999999999998876 56777777777777 6 8999999999987775 4556666666676
Q ss_pred h----CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 434 N----NGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~----~g~~~~A~~l~~~M~~~gv~-pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
. .++.++|.+.|+...+.|.. -+...+..|=..|.. .++.++|..+|++-.+.
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 6 78999999999999877632 126677778788877 78899999999998776
No 159
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.09 E-value=0.011 Score=68.20 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=124.2
Q ss_pred CCCchhhhhhhhhhcccccccccc-----c-CCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGD-----S-RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~-----~-~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.++|.+.+. +... . ..-+ +...|..+-.. +.+.|++++|...|++..+.. |+.
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~~- 466 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVDFSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GWR- 466 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------CCTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CCC-
T ss_pred cccCHHHHHHHHH-------HhhhhcccccccccccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cch-
Confidence 5688889988885 3320 0 0112 34446666666 888999999999999887642 322
Q ss_pred ccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005628 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (687)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~ 400 (687)
...|.. +=..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.
T Consensus 467 ------------------------------~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 467 ------------------------------WRLVWY-RAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELA 514 (681)
T ss_dssp ------------------------------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 223333 5567889999999999999988753 22567889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 005628 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (687)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~ 472 (687)
|++++ .+.|++..+.. .-+...|..+-..+.+.|+.++|.+.|++..+ +.|+ ...|..+..++...+.
T Consensus 515 g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99999 99999887653 12456788889999999999999999998765 3465 4566666677666554
No 160
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.00 E-value=0.47 Score=48.60 Aligned_cols=239 Identities=10% Similarity=-0.004 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC--chhhhhhhhhhcccccccccccCCCCCcc
Q 005628 203 KRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g--~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
+...-++|+++++.+... .|+-+ .||.-=..+. ..| ++++++..++ .+... .-++-.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~ 104 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQ 104 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCH
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHH
Confidence 334457899999999864 45544 4565555555 455 8899999885 22221 111333
Q ss_pred chhcccccccc-ccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHH
Q 005628 280 QLDYGSSPMID-KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (687)
Q Consensus 280 tyn~Li~~~~~-~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~l 358 (687)
.|+.--..... .......+++++++.+++.+.+.. | ..| ..|+. -
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--p--kny-----------------------------~aW~~-R 150 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--P--KNH-----------------------------HVWSY-R 150 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--T--TCH-----------------------------HHHHH-H
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--C--CCH-----------------------------HHHHH-H
Confidence 35543222000 000111278899999999998752 2 222 12222 2
Q ss_pred HHHHHhhccHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 359 LSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 359 I~~~~k~g~~~--~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~------~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
--.+.+.|..+ ++++.+++|.+... -|-..|+---..+.+.+. ++++++.++.+..... -|...|+-+-.
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ 228 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLG 228 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHH
T ss_pred HHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHH
Confidence 22233445556 89999999998653 477888877666667676 8899999998887642 46777888888
Q ss_pred HHHhCCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 431 VFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 431 ~~~~~g~~~~-A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
.+.+.|+... +.++.+.+.+.+ -..+...+..|.+.|++.|+.++|.++++.+.+....+..+-|+-
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 8888887544 555666655433 134778899999999999999999999999987422333334443
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.99 E-value=0.0085 Score=51.54 Aligned_cols=85 Identities=11% Similarity=-0.037 Sum_probs=43.9
Q ss_pred hccHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 365 KYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g--i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
.|++++|...|++..+.+ -+-+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355556666666665543 11233455555556666666666666666655442 112344555555556666666666
Q ss_pred HHHHHHHH
Q 005628 443 SVEEHMLE 450 (687)
Q Consensus 443 ~l~~~M~~ 450 (687)
..|+...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.36 Score=51.05 Aligned_cols=209 Identities=8% Similarity=-0.019 Sum_probs=128.3
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCC-CCC---Cc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSK-KDR---SE------QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQY 227 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~-g~~---P~------~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-Gi~pd~~ 227 (687)
.+.+.++..+|.+.|....+....... ... .. ...+..+...|.+.|++++|.+++..+... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 455788999999999998764322211 000 00 124778899999999999999999887642 1112222
Q ss_pred HHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHH
Q 005628 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (687)
Q Consensus 228 tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf 307 (687)
+-..+...+. .+ +...|..+.|..++
T Consensus 93 ~~~~~~~~l~--------------------~~----------------------------------~~~~~~~~~a~~~~ 118 (434)
T 4b4t_Q 93 TVKVLKTLIE--------------------KF----------------------------------EQVPDSLDDQIFVC 118 (434)
T ss_dssp HHHHHHHHHH--------------------HH----------------------------------CSCCSCHHHHHHHH
T ss_pred HHHHHHHHHH--------------------HH----------------------------------HhCCCCHHHHHHHH
Confidence 2111111111 00 33345556666555
Q ss_pred HHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CC-
Q 005628 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EV- 383 (687)
Q Consensus 308 ~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi- 383 (687)
.+...... ..+..+. ..++.. |...|...|++++|..++++.... +.
T Consensus 119 ~~~~~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 119 EKSIEFAK----------------------------REKRVFLKHSLSIK-LATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHH----------------------------HSSCCSSHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH----------------------------HhCccHHHHHHHHH-HHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 54432100 0000011 112334 778889999999999999887642 21
Q ss_pred -CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 384 -PM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 384 -~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.+ ...+|..++..|...|++++|..+++..... +..|. ...|..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2457889999999999999999999876532 22222 24566677777888999999888877654
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.95 E-value=0.043 Score=55.65 Aligned_cols=131 Identities=11% Similarity=-0.056 Sum_probs=91.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCc-cccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~-~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
+...|++++|.++|+.+...+ |+- ..| . +-..+.+.+++++|+
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~~---------------------------------~-~a~l~~~~~r~~dA~ 155 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVAW---------------------------------M-KAVVYGAAERWTDVI 155 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHHH---------------------------------H-HHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHHH---------------------------------H-HHHHHHHcCCHHHHH
Confidence 778899999999998776543 322 222 1 345778999999999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 373 EIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 373 ~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
..|+...... .|. ...+..|=.++...|++++|+..|++.......|.. ......-.++.+.|+.++|..+|+++
T Consensus 156 ~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 156 DQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9998554421 111 236777778899999999999999988754332542 23445556778899999999999999
Q ss_pred HHCCCCCCHHHHHHH
Q 005628 449 LEHGVYPEEPELEAL 463 (687)
Q Consensus 449 ~~~gv~pd~~ty~~L 463 (687)
.... |+...+.+|
T Consensus 235 ~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 235 QTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHS--CCHHHHHHH
T ss_pred HhcC--CcHHHHHHH
Confidence 8853 554333333
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.80 E-value=0.14 Score=43.75 Aligned_cols=92 Identities=9% Similarity=-0.045 Sum_probs=74.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~ 430 (687)
+-..+.+.|++++|.+.|++....... +. ..+..+-..+.+.|++++|...|+...... |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 445677899999999999999875322 22 477778889999999999999999988753 44 455777788
Q ss_pred HHHhCCChHHHHHHHHHHHHCC
Q 005628 431 VFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~g 452 (687)
.+.+.|+.++|...|+...+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999998753
No 165
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.73 E-value=0.37 Score=52.19 Aligned_cols=222 Identities=8% Similarity=-0.025 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC---chhhhhhhhhhcccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG---SGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g---~~~~A~~lf~~~~~~s~em 269 (687)
.+..|-..|...+.++.+..-.....+.-...++..+..|-..|. +.| +.++|...|. .-
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~----------~~g~~~~~~~A~~~~~-------~a 205 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ----------KKQQPEQQAELLKQME-------AG 205 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH----------HTTCHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HcCCcccHHHHHHHHH-------HH
Confidence 444455555555644444333333322212223336666666776 456 7788888874 22
Q ss_pred cccCCCCCccchh----ccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc
Q 005628 270 GDSRDMDNNGQLD----YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (687)
Q Consensus 270 ~~~~g~~d~~tyn----~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (687)
.+. |-.+...+. .+..+ ....+++++|...|+... .|. ...+
T Consensus 206 a~~-g~~~a~~~~~Lg~~y~~g------~~~~~d~~~A~~~~~~aa-~g~---~~a~----------------------- 251 (452)
T 3e4b_A 206 VSR-GTVTAQRVDSVARVLGDA------TLGTPDEKTAQALLEKIA-PGY---PASW----------------------- 251 (452)
T ss_dssp HHT-TCSCHHHHHHHHHHHTCG------GGSSCCHHHHHHHHHHHG-GGS---THHH-----------------------
T ss_pred HHC-CCHHHHHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHc-CCC---HHHH-----------------------
Confidence 222 322222111 22223 334468888998888765 321 1111
Q ss_pred CCCCChhhhHHHHHHH-H--HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcC
Q 005628 346 DWSIDNQDADEIRLSE-D--AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLG 417 (687)
Q Consensus 346 g~~pd~~tyn~~lI~~-~--~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g-----~~~~A~~l~~~M~~~g 417 (687)
.. |=.. | ...++.++|.+.|++..+.| +...+..|-..|. .| ++++|+..|+.-. .|
T Consensus 252 ---------~~-Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g 316 (452)
T 3e4b_A 252 ---------VS-LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR 316 (452)
T ss_dssp ---------HH-HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT
T ss_pred ---------HH-HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC
Confidence 11 2122 2 34789999999999999887 6777777777777 55 9999999998766 33
Q ss_pred CCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 418 INPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
+...+..|=..|.. ..+.++|.+.|+...+.|. ...+..|-..|.. ..+.++|...|+.-.+.
T Consensus 317 ---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 317 ---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp ---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 44555555555555 3499999999999988774 2334444444443 45788898888887777
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.56 E-value=0.022 Score=48.89 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=69.3
Q ss_pred HcCChHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
..|++++|...|++..+.+ -+-+...|..+-..|.+.|++++|.+.|+...+..- -+...|..+-.+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999988754 123456788888899999999999999999987642 2577888899999999999999
Q ss_pred HHHHHHHHhc
Q 005628 477 YYLLHKLRTS 486 (687)
Q Consensus 477 ~~ll~~M~~~ 486 (687)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.56 E-value=0.1 Score=45.20 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~ 438 (687)
..+.+.|++++|...|++..+.. +-+...|..+-..+...|++++|...|+...+. .| +...|..+-..|...|+.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 45566677777777777666532 125556666666666677777777766665554 23 334555555666666666
Q ss_pred HHHHHHHHHHHH
Q 005628 439 DKACSVEEHMLE 450 (687)
Q Consensus 439 ~~A~~l~~~M~~ 450 (687)
++|...|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.47 E-value=0.048 Score=59.86 Aligned_cols=119 Identities=11% Similarity=0.011 Sum_probs=90.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.+++..+.. .-+...|..+-.+|.+.|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34667899999999999988753 2358899999999999999999999999988763 234578888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRV--SVEAGKGDRVYYLLH 481 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~--~~~~g~~~~A~~ll~ 481 (687)
+|.+.|++..+..-. +...+..+-.+ +.+.|++++|..+++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998875321 22344444444 788899999999887
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.44 E-value=0.11 Score=57.20 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHhhccHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCc-chHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLD---EVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPRL-RSYG 426 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---gi~p---d-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd~-~ty~ 426 (687)
.+-..|++++|..++++..+. -+.| + ..+++.|...|...|++++|..++++.... | -.|++ .+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355788999999999877642 1222 2 457899999999999999999998876532 2 22333 6788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH-----GVY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~-----gv~-pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|-..|...|++++|..++++..+- |-. |+ ..+.+.|-.++...+.+++|+.+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876532 321 22 234455566667788899999999998775
No 170
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.32 E-value=0.29 Score=43.41 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCC
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGD 437 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~ 437 (687)
..-.+++++|.+.|++..+.| .|+.. |-..|...+.+++|++.|+.-.+.| +...+..|=..|.. .++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC
T ss_pred cCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCcc
Confidence 344567899999999999988 33333 5556666778899999999988875 55667777777777 799
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+...+.| +...+..|-..|.. .++.++|..+|++-.+.
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999999999886 57777778888888 88999999999988877
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.74 Score=48.53 Aligned_cols=125 Identities=6% Similarity=-0.005 Sum_probs=91.6
Q ss_pred HHHhhccHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CC--CC-CcchHHHHHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NP-RLRSYGPALS 430 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~----~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~--~P-d~~ty~~lI~ 430 (687)
.+...|..++|.+++.+... .+..+. ..++..|...|...|++++|..++.+.... +. .| ...+|..++.
T Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 4b4t_Q 104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK 183 (434)
T ss_dssp HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 33456788888888877653 333333 457888999999999999999999987643 21 11 2357888999
Q ss_pred HHHhCCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 431 VFCNNGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~--gv~-p-d--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.|...|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+...
T Consensus 184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999876542 121 2 1 34567777777889999999988877654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.24 E-value=0.096 Score=45.33 Aligned_cols=94 Identities=12% Similarity=-0.030 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
+-.+-..+.+.|++++|...|+...+. .| +...|..+-..+...|+.++|...|+...+..- -+...|..|-..|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 344556778899999999999998875 34 566777788889999999999999999887532 25778888999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
+.|++++|...|++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998765
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.22 E-value=0.46 Score=44.39 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC--------------cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--------------LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd--------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
...+..+-..+.+.|++++|...|++..... -.|+ ...|..+-.+|.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456677778889999999999999988642 1121 267888888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
. ..+...|..+-.+|...|++++|...|++....
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 346788888999999999999999999998876
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.22 E-value=0.24 Score=49.84 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSV 431 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~ 431 (687)
.+.. +-..+.+.|++++|.+.|++..... +-+...|..+-..|.+.|++++|...++...+. .| +...|..+-.+
T Consensus 6 ~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 6 ELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444 5566777788888888887776642 226677777777777888888888887776543 23 34566667777
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 005628 432 FCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~ 450 (687)
|...|+.++|...|+...+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7778888888877777654
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.21 E-value=0.17 Score=55.10 Aligned_cols=130 Identities=10% Similarity=-0.017 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
.|.. +-..|.+.|++++|...|++..+....-. ...|..+-.+|.+.|++++|+..+++.....
T Consensus 270 ~~~~-~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKE-KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3444 55778888999999999998876321111 5788888888888899999998888877653
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhc
Q 005628 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~-ll~~M~~~ 486 (687)
.-+...|..+-.+|...|++++|...|+...+. .| +...|..+-..+.+.++.+++.+ ++..|-.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 235567777788888888999998888888764 33 34566777777777777776653 44444433
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.14 E-value=0.28 Score=50.82 Aligned_cols=97 Identities=12% Similarity=-0.048 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc----------------chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----------------RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----------------~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|..+-..|.+.|++++|...|++..... |+. ..|..+-.+|.+.|++++|...|+...+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888999999999999999987653 443 7899999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. ..+...|..+-.+|...|++++|...|++....
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 64 336888999999999999999999999999887
No 177
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.85 E-value=0.2 Score=57.43 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=90.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV---------PMN------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi---------~pd------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
.+...-+.|++++|.++|+.+..... .|+ ..+|...++..-+.|.++.|..+|....+.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66667778889999999988876310 132 236777788777888899999999888765
Q ss_pred -C-CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 417 -G-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 417 -g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+ ..+.+....+.|.-.+ .++.+.|.++|+...+. +.-+...|...++.....|+.+.|..+|++....
T Consensus 464 ~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred cCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2 2333444444444222 35588999999888776 4446666778888888889999999999988776
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.77 E-value=0.25 Score=49.72 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+...+..+-..+.+.|++++|...|++.... .| +...|..+-..|.+.|++++|...++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567788888999999999999999988775 34 66778888889999999999999999987653 23577888889
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+|...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987765
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.74 E-value=0.18 Score=55.18 Aligned_cols=116 Identities=7% Similarity=-0.003 Sum_probs=87.3
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...|+. +-..|.+.|++++|.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~-------------------------------~~~~~~-lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSN-------------------------------AIYYGN-RSLAYLRTECYGYALG 61 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCcc-------------------------------HHHHHH-HHHHHHHhcCHHHHHH
Confidence 78899999999999987764 2322 233445 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHH--HHhCCChHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~--~~~~g~~~~A~~l~~ 446 (687)
.|++..+.. +-+...|..+-.+|.+.|++++|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|.++++
T Consensus 62 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 62 DATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998864 3467889999999999999999999999987752 43 3445555444 788899999999988
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.64 E-value=0.2 Score=52.77 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=45.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD---------------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-R 421 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---------------gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d 421 (687)
+-..|.+.|++++|.+.|++..+. --+-+..+|..+-.+|.+.|++++|.+.+++..+. .| +
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 306 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSN 306 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cchh
Confidence 445666777777777777766541 00112334444444555555555555555544432 12 2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|..+-.+|...|+.++|.+.|+...+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444555555555555544443
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.034 Score=46.34 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
..|..+-..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|+.++|.+.++...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444555555555555555555544431 11334444555555555555555555555544
No 182
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.40 E-value=1.9 Score=43.99 Aligned_cols=230 Identities=7% Similarity=0.010 Sum_probs=148.3
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC-- 236 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g--~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~-- 236 (687)
.+...-++|+++++.+.... |+ +...||.-=..+...| ++++++++++.+....-+ +..+|+.--..+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--AS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--cH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 34445568999999986532 21 2356777777777788 999999999999975322 334455443333
Q ss_pred --HhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChh--hHHHHHHHHHh
Q 005628 237 --SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEKEN 312 (687)
Q Consensus 237 --~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~--~A~~lf~eM~~ 312 (687)
...+ ..++.++++.+++ .+... .-.|-..|+----. +.+.|.++ +++..++.|.+
T Consensus 116 ~~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 116 IMELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp HHHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHHHH
Confidence 3111 2367888888885 34332 22244556554444 55566777 99999999987
Q ss_pred cCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh---hccHHHHHHHHHHHHhCCCCCCHHH
Q 005628 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK---KYAFQRGFEIYEKMCLDEVPMNEAS 389 (687)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k---~g~~~~A~~lf~~M~~~gi~pd~~t 389 (687)
.... |-..|+ |-..++..+.+ ...++++++.++++.... +-|...
T Consensus 175 ~d~~-N~sAW~------------------------------~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~Sa 222 (306)
T 3dra_A 175 TDLK-NNSAWS------------------------------HRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPST 222 (306)
T ss_dssp HCTT-CHHHHH------------------------------HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHH
T ss_pred hCCC-CHHHHH------------------------------HHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccH
Confidence 6422 222221 11112221111 112788999999888764 358899
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHHcC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 390 LTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~-A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
|+-+-..+.+.|+..+ +..+..+....+ -..+...+..+...|++.|+.++|.++++.+.+.
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 9999999999888555 445666554432 1235677888999999999999999999998763
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.16 E-value=0.53 Score=42.34 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.=..+.+.|++++|.+.|.+....- ..+.......... ...+.. -+...|..+-.+|.+.|+
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~------------~~~~~~~~~~~~~--~~~~~~----~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRL------------DTLILREKPGEPE--WVELDR----KNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHTSCTTSHH--HHHHHH----THHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH------------HHhcccCCCCHHH--HHHHHH----HHHHHHHHHHHHHHhcCc
Confidence 3456778889999988888765420 0000000000000 000000 122345555555556666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++|...++..++.. +-+...|..+-.+|...|++++|...|++....
T Consensus 79 ~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 79 LHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 666666665555432 223455555666666666666666666665554
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.08 E-value=0.23 Score=43.63 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EE 457 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~ 457 (687)
.++..+-..+...|++++|...+++.....-. ++ ..+|..+-..+...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46778888899999999999999887653110 11 147888888999999999999999987653 1111 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+..+-..+...|++++|...+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777888889999999999999887653
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.89 E-value=0.44 Score=42.93 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|..+-.+|.+.|++++|...+++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 455666666777777777777777776665
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.84 E-value=0.13 Score=53.36 Aligned_cols=124 Identities=9% Similarity=-0.018 Sum_probs=65.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~------------------tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~ 419 (687)
+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|+..++...... .
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 556777889999999999987653 34433 67777777778888888888887776542 1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCChHHHHHHHHHHHhc
Q 005628 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 420 Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~-~~~~g~~~~A~~ll~~M~~~ 486 (687)
-+...|..+-.+|...|++++|...|+...+. .|+ ...+..|-.. ....+..+++..+|.+|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 24566777777788888888888888776543 333 2233333333 23345556666677766554
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.70 E-value=3.3 Score=43.07 Aligned_cols=237 Identities=10% Similarity=-0.053 Sum_probs=140.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCcccCCCC-chhhhhhhhhhcccccccccccCCCCCcc
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~-~tyn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
.+.+.-++|+++++.+... .|+- ..||.-=..+. ..| .+++++..++ .+... .-++-.
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~ 124 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQ 124 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHH
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHH
Confidence 3344556899999998865 3443 34555444444 344 4788888875 33322 222444
Q ss_pred chhccccccccccccccC-C-ChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHH
Q 005628 280 QLDYGSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~-g-~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (687)
.|+.--.. +.+. + ++++++.+++.+.+..-+ |-..|+ |-..
T Consensus 125 aW~hR~wl------L~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~------------------------------~R~w 167 (349)
T 3q7a_A 125 VWHHRLLL------LDRISPQDPVSEIEYIHGSLLPDPK-NYHTWA------------------------------YLHW 167 (349)
T ss_dssp HHHHHHHH------HHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHH------------------------------HHHH
T ss_pred HHHHHHHH------HHHhcCCChHHHHHHHHHHHHhCCC-CHHHHH------------------------------HHHH
Confidence 46554333 3332 3 678888888888764211 112221 1111
Q ss_pred HHHHHHhhc-----cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCCCCCcchH
Q 005628 358 RLSEDAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 358 lI~~~~k~g-----~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~-------~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
++..+.+.. .+.++++.++++.+..+ -|...|+-.-..+.+.+. ++++++.+++..... .-|...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 222222211 23489999999988653 488889888888888776 688999988877653 2355667
Q ss_pred HHHHHHHHhCCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005628 426 GPALSVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLL 480 (687)
Q Consensus 426 ~~lI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll 480 (687)
+-+-..+.+.|.. ....++..++...+ -.+.......|.+.|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7666666666553 22333333333322 1467888999999999999999999999
Q ss_pred HHHHhccCCCChhHHHH
Q 005628 481 HKLRTSVRKVSPSTADV 497 (687)
Q Consensus 481 ~~M~~~~~g~~p~t~~~ 497 (687)
+.+.+....+..+-|+-
T Consensus 326 ~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 326 EKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHHTTCGGGHHHHHH
T ss_pred HHHHhhhChHHHHHHHH
Confidence 99987633333334443
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.56 E-value=0.28 Score=41.27 Aligned_cols=77 Identities=16% Similarity=-0.005 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 371 A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
|.+.|++..+.. +-+...|..+-..|...|++++|...|+...... ..+...|..+-..|...|+.++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544432 2245556666666666666666666666655432 1123445555555555566666655555543
No 189
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.46 E-value=1 Score=49.41 Aligned_cols=176 Identities=10% Similarity=0.024 Sum_probs=106.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc---------CCCC---ChhhhHHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK---------DWSI---DNQDADEIRLSE 361 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~---------g~~p---d~~tyn~~lI~~ 361 (687)
+.+.|+++.|..+|++.... |+..... +.-+...+...++..+... +..+ ....|-. .+..
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~---~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~-y~~~ 295 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLS---LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN-HLNY 295 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHH---HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHH---HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH-HHHH
Confidence 56678999999999998887 6654332 1111100101111111111 0001 1123333 4455
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCCh
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDV 438 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~ 438 (687)
+-+.+.++.|..+|+.....+ .+...|. +.+...+ .++.+.|..+|+...+.- |+. ..+...|+...+.|+.
T Consensus 296 ~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCH
Confidence 556778899999999882222 2333443 3333333 236899999998877642 332 2345567777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|..+|+... -....|...++.=...|+.+.+..+++++...
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999998872 25778888888778889998888888877753
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.22 E-value=0.8 Score=36.00 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|..+-..+...|++++|...|++..... ..+...|..+-..+.+.|+.++|.+.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444445555555555555555544331 11233444444555555555555555555444
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.98 E-value=0.35 Score=53.10 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cC-C
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEV-PMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LG-I 418 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi-~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~-----~g-~ 418 (687)
.++++ |...|...|++++|..++++..+ .|. -|+ ..+|+.|-..|...|++++|..++++-.. .| -
T Consensus 352 ~~~~n-La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 352 RLLSI-ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46777 88999999999999999988763 232 233 36799999999999999999999887543 23 1
Q ss_pred CCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 419 NPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 419 ~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|++ .+.+.|-.++...+..++|..+|..+.+.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333 34556666777888999999999988653
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.76 E-value=1.4 Score=38.73 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=88.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
..-..++++|...|.+-.+.|. |+.. |=..|...+.+++|.+
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~-~~a~-------------------------------------lg~~y~~g~~~~~A~~ 46 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNE-MFGC-------------------------------------LSLVSNSQINKQKLFQ 46 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-TTHH-------------------------------------HHHHTCTTSCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCC-Hhhh-------------------------------------HHHHHHcCCCHHHHHH
Confidence 4445567889999988877762 2211 1123445567788999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVE 445 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~ 445 (687)
.|++-.+.| +...+..|-..|.. .++.++|++.|+.-.+.| +...+..|=..|.. .++.++|.+.|
T Consensus 47 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 47 YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999998876 67888888888888 899999999999998876 45667777777877 89999999999
Q ss_pred HHHHHCCC
Q 005628 446 EHMLEHGV 453 (687)
Q Consensus 446 ~~M~~~gv 453 (687)
+...+.|.
T Consensus 121 ~~Aa~~g~ 128 (138)
T 1klx_A 121 EKACRLGS 128 (138)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 99888764
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.43 E-value=0.65 Score=38.95 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 405 ~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
+|...|++..+.. +-+...|..+-..|...|++++|...|+...+.. ..+...|..+-..|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766542 2356778888889999999999999999998764 2357788899999999999999999999887
Q ss_pred hc
Q 005628 485 TS 486 (687)
Q Consensus 485 ~~ 486 (687)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.23 E-value=1.3 Score=46.37 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--------------CCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~--------------g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (687)
.|..+-..+.+.|++++|...|++..+. ...| +...|..+-.+|.+.|++++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666777889999999999999987751 0122 45678888899999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.-+...|..+-.+|...|++++|...|++....
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 236778888999999999999999999998877
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.09 E-value=1.9 Score=46.60 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|..+-..|.+.|++++|...|++.... .|+ ...|..+-.+|.+.|++++|...++..++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346777788899999999999999988764 243 47888999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. .-+...|..+-.+|...|++++|...|++....
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 64 236788999999999999999999999998876
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.4 Score=39.47 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
..|.. +-..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|...++..... .|+.
T Consensus 5 ~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 5 EKQKE-QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp HHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 34445 6677889999999999999988753 346788999999999999999999999998764 4654
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.81 E-value=2.8 Score=38.33 Aligned_cols=103 Identities=8% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCc
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRL 422 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~-p-----d~-----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~ 422 (687)
=..+.+.|++++|.+.|++..+.... | +. ..|+.+-.++.+.|++++|+..++.-.+. .+.||-
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~ 97 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 97 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence 35677889999999999988764221 1 22 27777778888888888888887776653 124543
Q ss_pred -chH----HHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005628 423 -RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELE 461 (687)
Q Consensus 423 -~ty----~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~ 461 (687)
..| ...=.++...|++++|...|+...+ .|+.+......
T Consensus 98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344 5555666677777777777776543 34554444433
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.55 E-value=0.95 Score=37.19 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
+...|..+-..|.+.|++++|...|+...+.. +-+...|..+-.+|.+.|+.++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555566666665555555432 1123345555555555555555555555543
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.29 E-value=1.3 Score=34.60 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV 431 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~ 431 (687)
.|.. +-..|.+.|++++|...|++..... +.+...|..+-..+.+.|++++|...|++..... |+ ...+..+-..
T Consensus 11 ~~~~-la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYN-LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 3444 6677889999999999999988753 3367889999999999999999999999987652 43 3344444333
Q ss_pred H
Q 005628 432 F 432 (687)
Q Consensus 432 ~ 432 (687)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=90.72 E-value=8.2 Score=40.04 Aligned_cols=226 Identities=12% Similarity=-0.010 Sum_probs=137.5
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g-~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
+.+...-.+|+++++.+.... |+ +...||.-=..+...| ++++++++++.+....- -+..+|+.--..+..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 345556678999999997542 11 2256776666666777 59999999999997542 356677766655552
Q ss_pred cccCCcccCCCC-chhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChh--------hHHHHHHH
Q 005628 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFNE 309 (687)
Q Consensus 239 ~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~--------~A~~lf~e 309 (687)
. .+ +.++++++++ .+... .-.|-..|+----. +.+.|.++ ++++.+++
T Consensus 136 l---------~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 136 I---------SPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp H---------CCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred h---------cCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHHH
Confidence 1 13 5678888774 34332 22355556553333 33333444 88888888
Q ss_pred HHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhc-------cHHHHHHHHHHHHhCC
Q 005628 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-------AFQRGFEIYEKMCLDE 382 (687)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g-------~~~~A~~lf~~M~~~g 382 (687)
+.+.... |...|+ . .-..+.+.+ .++++++.++++....
T Consensus 193 ~I~~dp~-N~SAW~--------------------------------~-R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 193 MLRVDGR-NNSAWG--------------------------------W-RWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHCTT-CHHHHH--------------------------------H-HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCC-CHHHHH--------------------------------H-HHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 8876321 222222 1 111111222 2678899988887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhCCC
Q 005628 383 VPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 383 i~pd~~tyn~LI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-|...|+-+-..+.+.|.. ....++..++...+ -.+......-|.+.|+..|+
T Consensus 239 -P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 317 (349)
T 3q7a_A 239 -PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR 317 (349)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC
Confidence 34788898877777777664 22223322222221 02455677888899999999
Q ss_pred hHHHHHHHHHHHHC
Q 005628 438 VDKACSVEEHMLEH 451 (687)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (687)
.++|.++++.+.+.
T Consensus 318 ~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 318 VDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998654
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.58 E-value=3 Score=47.93 Aligned_cols=71 Identities=7% Similarity=0.063 Sum_probs=35.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
..|++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+.. |..+..-|...|+.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 445555555554433 2445566666666666666666666655432 3334444444444444444
Q ss_pred HHHHHH
Q 005628 444 VEEHML 449 (687)
Q Consensus 444 l~~~M~ 449 (687)
+-+...
T Consensus 729 ~~~~a~ 734 (814)
T 3mkq_A 729 LAKDAE 734 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=90.27 E-value=1.1 Score=46.41 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc------------------hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~------------------ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666777899999999999987654 24433 788888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. .-+...|..+-.+|...|++++|...|++....
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 236788999999999999999999999987665
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.24 E-value=1.5 Score=47.24 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHc--C-CC---CC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHH
Q 005628 401 GDGDMAFDMVKRMKSL--G-IN---PR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (687)
Q Consensus 401 g~~~~A~~l~~~M~~~--g-~~---Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li~~ 466 (687)
|++++|..++++..+. . +- |+ ..+|+.|...|...|++++|..++++.++- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5667777776655431 1 11 22 256777777777777777777777765432 2 1232 3456777777
Q ss_pred HHhcCChHHHHHHHHHHH
Q 005628 467 SVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~ 484 (687)
|...|++++|+.++++-.
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777776543
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.06 E-value=0.98 Score=48.60 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=42.0
Q ss_pred HcCChHHHHHHHHHHHHc--C-CCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSL--G-INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~--g-~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li 464 (687)
+.|++++|..++++..+. . +-|+ ..+++.|...|...|++++|..++++.++- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 344555555555554432 1 1111 245555555555566666666555554321 1 1122 23455555
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 005628 465 RVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M 483 (687)
..|...|++++|+.++++-
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 6666666666666655543
No 205
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=89.95 E-value=3.4 Score=37.72 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------c-----chHHHHHHHHHhCCChHHHHHHHHHHHHC----
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------L-----RSYGPALSVFCNNGDVDKACSVEEHMLEH---- 451 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--------~-----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---- 451 (687)
.+...-..+.+.|++++|...|+...+. .|+ . ..|+.+-.++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3444555678899999999999987764 344 2 28889999999999999999999998874
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 452 -GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 452 -gv~pd~-~ty----~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|+. ..| ...=.++...|++++|+..|++-.+-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 225654 456 67778889999999999999987654
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.57 E-value=1.3 Score=47.61 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=73.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCc-c
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD---EVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPRL-R 423 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd~-~ 423 (687)
.+..+.+.|++++|.+++++..+. -+.|+ ..+++.|...|...|++++|+.++++...- | -.|++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 456677889999999999988753 12233 468899999999999999999999977632 2 22433 6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+|+.|-..|...|+.++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999988754
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=89.20 E-value=8 Score=40.36 Aligned_cols=148 Identities=8% Similarity=-0.045 Sum_probs=96.0
Q ss_pred CCCChhhhHHHHHHHHH--h---hccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH---cC--ChHHHHHHHHHHHH
Q 005628 347 WSIDNQDADEIRLSEDA--K---KYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS---MG--DGDMAFDMVKRMKS 415 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~--k---~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~---~g--~~~~A~~l~~~M~~ 415 (687)
.+.+...|.. .+.+.. . ...+.+|..+|++..+. .|+ ...|..+.-+|.- .+ .......+-..+..
T Consensus 190 ~p~~~~Aydl-~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTN-FYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445555655 443322 2 33568999999999875 354 3344433333321 11 11111111111111
Q ss_pred ----cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 005628 416 ----LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (687)
Q Consensus 416 ----~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~ 491 (687)
..-..+..+|.++-..+...|++++|...++.....+ |+...|..+=..+.-.|++++|.+.|++-... .|.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 1224567788888777777899999999999999876 88888877778889999999999999988887 777
Q ss_pred hhHHHHHHHH
Q 005628 492 PSTADVIAKW 501 (687)
Q Consensus 492 p~t~~~I~~~ 501 (687)
+.||..+..+
T Consensus 343 ~~t~~~~~~l 352 (372)
T 3ly7_A 343 ANTLYWIENG 352 (372)
T ss_dssp HHHHHHHHHS
T ss_pred cChHHHHhCc
Confidence 7787655443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.85 E-value=1.6 Score=35.78 Aligned_cols=65 Identities=8% Similarity=-0.072 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+...|..+-..|.+.|++++|.+.|+...+..- -+...|..|-.+|.+.|++++|...|++....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445677888899999999999999999987642 25668889999999999999999999987765
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.55 E-value=1.3 Score=47.59 Aligned_cols=87 Identities=7% Similarity=-0.064 Sum_probs=68.7
Q ss_pred hhccHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCc-chHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPRL-RSYGPAL 429 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~---~gi~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd~-~ty~~lI 429 (687)
..|++++|..++++..+ .-+.|+ ..+++.|...|...|++++|..++++...- | -.|++ .+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35688999999988764 222333 368999999999999999999999987632 3 23444 6799999
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~ 450 (687)
..|...|+.++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.20 E-value=2 Score=49.46 Aligned_cols=74 Identities=8% Similarity=-0.044 Sum_probs=56.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
++..+-+.|..++|+++.++-. .-.......|++++|+++.+.+ .+...|..|-..+.+.|+
T Consensus 635 ~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCC
Confidence 6777888889999887764221 1133456789999999987543 466789999999999999
Q ss_pred hHHHHHHHHHHH
Q 005628 438 VDKACSVEEHML 449 (687)
Q Consensus 438 ~~~A~~l~~~M~ 449 (687)
++.|.+.|..+.
T Consensus 697 ~~~A~~~y~~~~ 708 (814)
T 3mkq_A 697 FKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 999999998874
No 211
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.96 E-value=7.6 Score=36.00 Aligned_cols=103 Identities=10% Similarity=0.117 Sum_probs=81.9
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
-....|+++.|.++.+++ -+...|..|-+...+.|+++-|.+.|..... |..|.--|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999999887 3788999999999999999999999987543 5667777777899888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
-.++-+.-...| -++.-...+.-.|+++++.++|.+..
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 777766655555 35666777778899999999986543
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=85.59 E-value=2.1 Score=34.39 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (687)
..+.+.|++++|.+.|++..+.. +-+.. .|..+-..|...|++++|...|+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555554432 11333 455555555555555555555555444
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=83.97 E-value=4.7 Score=36.46 Aligned_cols=48 Identities=2% Similarity=-0.058 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHc
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSL 416 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g---~~~~A~~l~~~M~~~ 416 (687)
+..+.+-|.+....|. ++..+.-.+--++++.. +++++..+|++..+.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3445555555544443 45555555555555555 444566666555544
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=83.47 E-value=3.1 Score=38.00 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=60.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCCCCCc-chHHHHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG----------DMAFDMVKRMKSLGINPRL-RSYGPALS 430 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~----------~~A~~l~~~M~~~g~~Pd~-~ty~~lI~ 430 (687)
..+.+.+++|.+.++...+.. +-+...|+.+=.++...+++ ++|+..|++..+. .|+. ..|..+=.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 346678899999999888754 33677777777777777664 4666666665554 3433 45666666
Q ss_pred HHHhCC-----------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 431 VFCNNG-----------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 431 ~~~~~g-----------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+|...| ++++|.+.|+...+ +.|+...|..-+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 665543 55666666665554 345544443333
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=81.87 E-value=5.4 Score=31.78 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=48.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-cc-hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPR-LR-SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
....+.+.|++++|...|+...+.. |+ .. .|..+-..|...|+.++|.+.|+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778999999999999988753 44 45 78888889999999999999999998764
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.62 E-value=28 Score=30.87 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=85.2
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C----------------CCCCcchHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----------------INPRLRSYGP 427 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g----------------~~Pd~~ty~~ 427 (687)
.|.++++.++..+.... -+..-||.+|--....-+-+-.+++++.+-+. . ..-+..-+..
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 45667778888887764 25566676666555555555555555544221 0 1124445667
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.|+.+...|.-+.-.++..++.. +-.|+....-.+-.+|.+.|+..+|.+++.+--++ |+...
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k--G~kEA 159 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK--GEKEA 159 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh--hhHHH
Confidence 77788888888888888888644 46778888889999999999999999999998888 65543
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=81.05 E-value=16 Score=39.76 Aligned_cols=23 Identities=4% Similarity=-0.278 Sum_probs=14.8
Q ss_pred HHHHHhhccHHHHHHHHHHHHhC
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLD 381 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~ 381 (687)
+.-+.+.|++++|.++|++....
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Confidence 34455666777777777766655
No 218
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=80.84 E-value=41 Score=37.14 Aligned_cols=132 Identities=5% Similarity=-0.057 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC-ChHHHHHH
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSV 444 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-~~~~A~~l 444 (687)
++++++.++++.+.. +-+..+|+.---.+.+.+ +++++++.++.+.+... -|...|+.---.+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998764 347788888888888889 77999999999998742 35667777777777888 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhccCCCCh-hHHHHHHHHHcC
Q 005628 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSP-STADVIAKWFNS 504 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~--------------g~~~~A~~ll~~M~~~~~g~~p-~t~~~I~~~~~~ 504 (687)
++.+.+.... |...|+..-..+.+. +.++++++++++.... .|.. +.|.-...++..
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence 9999876543 778888777776653 4578899988887766 3332 255555555443
No 219
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.66 E-value=15 Score=32.29 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=50.0
Q ss_pred HHHHHHhhc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 358 RLSEDAKKY-AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g-~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
.+..+-+.. +.=+..+-++.+-...+.|+..+..+.+++|-+..++..|.++|+-.+.+ +.+...+|..+|.
T Consensus 58 y~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 58 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 334444444 44456666666667778888888888888888888888888888877755 4455566777664
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=75.56 E-value=36 Score=31.45 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.|.. |=+.....|+++-|.+.|....+ |..|.-.|.-.|+.+.-..+-+.-...|- ||.....+
T Consensus 36 ~Wk~-Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~ 99 (177)
T 3mkq_B 36 TWER-LIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNT 99 (177)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred HHHH-HHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHH
Confidence 4555 77888899999999999998874 56677777778888877766655555543 78888888
Q ss_pred HhCCChHHHHHHHHHH
Q 005628 433 CNNGDVDKACSVEEHM 448 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M 448 (687)
.-.|+++++.++|.+.
T Consensus 100 l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 100 FYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHC
Confidence 8999999999888553
No 221
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.16 E-value=26 Score=29.21 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=51.2
Q ss_pred HHHHHhhc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 359 LSEDAKKY-AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 359 I~~~~k~g-~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
+..+-+.. +.=+..+-++.+-...+.|+..+..+.+++|-+..++..|.++|+-++.+ +.+...+|..+|.
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 33344444 45566666777777788888888888889888888888888888887755 3344556777765
No 222
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.54 E-value=5.1 Score=39.05 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=20.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhCCChHH
Q 005628 398 MSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDK 440 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~t--y~~lI~~~~~~g~~~~ 440 (687)
+..+......++++.+.+.|..++... -.+.+...++.|+.+-
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 344444444555555556665554432 1233444445555443
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=73.37 E-value=37 Score=34.13 Aligned_cols=122 Identities=10% Similarity=0.037 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHhh--c------cHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHH
Q 005628 352 QDADEIRLSEDAKK--Y------AFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSM-----GDGDMAFDMVKRMKS 415 (687)
Q Consensus 352 ~tyn~~lI~~~~k~--g------~~~~A~~lf~~M~~~gi~pd---~~tyn~LI~~~~~~-----g~~~~A~~l~~~M~~ 415 (687)
..|..+....+... | ....|..++++..+ +.|+ -..|+.|-..|.+. |+.++|.+.|++-.+
T Consensus 155 L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 155 LYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 34555444554432 2 34455555555554 3455 56788888888884 889999999988776
Q ss_pred cCCCC--CcchHHHHHHHHHhC-CChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 416 LGINP--RLRSYGPALSVFCNN-GDVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 416 ~g~~P--d~~ty~~lI~~~~~~-g~~~~A~~l~~~M~~~gv~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
. .| +..++...-..+|+. |+.++|.+.+++....... |+....|.+- -.+|..++.++.+
T Consensus 233 L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~~d 297 (301)
T 3u64_A 233 Y--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHVQD 297 (301)
T ss_dssp H--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTHHH
T ss_pred h--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHhHH
Confidence 5 35 367777777888884 8888889888888887666 7755444433 3456666655443
No 224
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=73.31 E-value=85 Score=32.00 Aligned_cols=117 Identities=6% Similarity=-0.061 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC----------
Q 005628 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN---------- 435 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~---------- 435 (687)
.+++++++++.|.+.. +-|-..|+----.+...|. ++++++.++.+.+... -|...|+-.-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccccccc
Confidence 4889999999999865 3578888888778888888 5899999999988743 4556676655555544
Q ss_pred ----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 005628 436 ----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-----------GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 ----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-----------g~~~~A~~ll~~M~~~ 486 (687)
+.++++++.++...... +-|...|+.+--.+.+. +.++++++.++++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 45788889988887754 33677777665555554 4578899999999887
No 225
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.80 E-value=2.8 Score=40.00 Aligned_cols=28 Identities=7% Similarity=-0.148 Sum_probs=22.0
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
.+..|+++....+++.+.+.|..++...
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 43 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYN 43 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCccc
Confidence 5778899988888888888887776553
No 226
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.44 E-value=48 Score=37.95 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHhhcc-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHc------CCCCCcch------H
Q 005628 360 SEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSL------GINPRLRS------Y 425 (687)
Q Consensus 360 ~~~~k~g~-~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~-~~~A~~l~~~M~~~------g~~Pd~~t------y 425 (687)
..+...++ .+.|.++|+++......-+.....++|..+.+.++ --+|.+++.+..+. .+.+.-.. +
T Consensus 256 ~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~ 335 (754)
T 4gns_B 256 SFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335 (754)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence 33333444 68899999999886432233333444444444332 22455555544321 22222211 1
Q ss_pred -HHHH----HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 426 -GPAL----SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 426 -~~lI----~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
..|+ .-|...|+.+.|+++-+..... .+-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122 3455689999999999987664 23357899999999999999999999998873
No 227
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=72.24 E-value=13 Score=38.90 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (687)
+.+..+|.++-..+...|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4567777777666666788888888888877765 66666655556667778888888888776653 46666653
No 228
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=71.39 E-value=9.7 Score=36.06 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (687)
+.|...++.|+++....+++.+.+.|..++
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 345666788998888888887777776554
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.33 E-value=13 Score=38.92 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (687)
..++..+...|+.++|...+..+... -.-+...|-.+|.+|.+.|+..+|.+.|+...+ -|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555566667777766666665543 223555667777777777777777766666533 366666543
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=70.85 E-value=34 Score=30.74 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChHHHH
Q 005628 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYP-E-EPELEALLRVSVEAGKGDRVY 477 (687)
Q Consensus 403 ~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g---~~~~A~~l~~~M~~~gv~p-d-~~ty~~Li~~~~~~g~~~~A~ 477 (687)
+..+.+-|.+....|- ++..+--.+--++++.. ++++|..++++..+.. .| + ...+=.|=-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666666666555 56666666666888888 7779999999998875 34 2 222333445679999999999
Q ss_pred HHHHHHHhc
Q 005628 478 YLLHKLRTS 486 (687)
Q Consensus 478 ~ll~~M~~~ 486 (687)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999988
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=70.20 E-value=62 Score=29.13 Aligned_cols=111 Identities=10% Similarity=-0.004 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCcc----hHHHHHHHH---HhCCChHHHHHHHHHHHHCC
Q 005628 386 NEASLTAVGRMAMSMGDG------DMAFDMVKRMKSLGINPRLR----SYGPALSVF---CNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~------~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~---~~~g~~~~A~~l~~~M~~~g 452 (687)
|..+|=..|+..-+.|++ ++..++|+.-... ++|+.. .|--|---| -..+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455566666666666666 6666677665543 555431 122111111 22378999999999987652
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHH
Q 005628 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAK 500 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~-I~~ 500 (687)
-.- ...|-..-+.=.+.|++..|.+++.+-... ++.|. ..++ |..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~--~~k~~~~le~a~~n 137 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER--GAVPLEMLEIALRN 137 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCcHHHHHHHHHh
Confidence 222 666666666668899999999999988887 77776 4444 443
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=68.76 E-value=25 Score=28.70 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=9.3
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 005628 392 AVGRMAMSMGDGDMAFDMVKR 412 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~ 412 (687)
.|-..+.+.|+++.|...|+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 333344444444444444444
No 233
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=67.65 E-value=30 Score=27.85 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 386 NEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~---~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
|...+..+-.++...++ .++|..+|++..+. .|+ ......+=..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444433332 35555555554443 122 233333334445555555555555555443
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=64.33 E-value=31 Score=28.10 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEH------GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~------gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-+-.|=..+.+.|+++.|...|+...+. .-.+....|..|-.+|.+.|++++|..++++....
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445666788999999999999887653 12346788999999999999999999999999876
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=62.79 E-value=19 Score=30.05 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+..+-++.+....+.|+..+..+.+++|-+..++.-|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777777777777777776665
No 236
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=60.10 E-value=29 Score=31.44 Aligned_cols=95 Identities=6% Similarity=-0.120 Sum_probs=68.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 005628 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------VDKACSVEEHMLEHGVYP-EEPELEALLRV 466 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~----------~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~ 466 (687)
.+.+.+++|.+.++...+.. .-+...|+.+=.++...++ +++|...|++.++. .| +...|..|=.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 45667889999998877653 2255666666667776665 45899999988875 34 56788888888
Q ss_pred HHhcC-----------ChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 467 SVEAG-----------KGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 467 ~~~~g-----------~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
|...| ++++|...|++-.+. .+.-..|.-
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 88764 899999999999887 443335533
No 237
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=59.12 E-value=2.1e+02 Score=31.33 Aligned_cols=120 Identities=6% Similarity=-0.058 Sum_probs=90.4
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~----------~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
....-++|++.++++..... -+...|+.-=..+.+.|+ ++++++.++.+.+.. .-+...|+.---.+.
T Consensus 41 ~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 41 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33455788999999987542 244567665555555666 899999999998763 124456766666777
Q ss_pred hCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhc
Q 005628 434 NNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-~~~~A~~ll~~M~~~ 486 (687)
+.| +++++.+.++.+.+.... |...|+.---.+.+.| ..+++++.+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 888 779999999999987644 7888888777778888 889999999988876
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=58.67 E-value=47 Score=28.78 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=41.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHcCCCC-CcchHHH-HHHHHHhCCCh
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM---AFDMVKRMKSLGINP-RLRSYGP-ALSVFCNNGDV 438 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~---A~~l~~~M~~~g~~P-d~~ty~~-lI~~~~~~g~~ 438 (687)
....+..+.+-|.+....|. |+..+--.+.-++.+...... ++.+++++...+ .| +.+-|.- |--++.|.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33445555555655544443 555555555556666655544 666666655542 12 1111111 11244455555
Q ss_pred HHHHHHHHHHHH
Q 005628 439 DKACSVEEHMLE 450 (687)
Q Consensus 439 ~~A~~l~~~M~~ 450 (687)
++|.+.++.+++
T Consensus 91 ~~A~~~~~~lL~ 102 (126)
T 1nzn_A 91 EKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=57.00 E-value=51 Score=29.25 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=38.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
-++.+...|+-|.-.+++.++.. ..+|+....-.+-.+|.+.|+..+|.+++.+.-+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 45666667777777777766433 3455666666677777777777777777776666665
No 240
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.57 E-value=11 Score=36.30 Aligned_cols=120 Identities=8% Similarity=0.022 Sum_probs=62.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHHcCChHHHHHHHHHHHH---cCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS----------------LTAVGRMAMSMGDGDMAFDMVKRMKS---LGI 418 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t----------------yn~LI~~~~~~g~~~~A~~l~~~M~~---~g~ 418 (687)
.+...+..|..+ +.+.+.+.|..++... -.+.+...+..|+.+- ++.+.+ .|.
T Consensus 96 ~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~----v~~Ll~~~~~ga 167 (260)
T 3jxi_A 96 ALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI----VHYLTENGHKQA 167 (260)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH----HHHHHHCSSCCC
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH----HHHHHhccccCC
Confidence 344445667755 4444455666665442 2345555667787654 444455 566
Q ss_pred CCCcc---hHHHHHHHHHhCCC----hHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 419 NPRLR---SYGPALSVFCNNGD----VDKACSVEEHMLEHGVYP----------EEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 419 ~Pd~~---ty~~lI~~~~~~g~----~~~A~~l~~~M~~~gv~p----------d~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
.++.. -.++|..++..... .+...++.+.+.+.|..+ |..-. +-+...++.|..+-+..|++
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL-SPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC-CHHHHHHHTTCHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCC-CHHHHHHHcCCHHHHHHHHH
Confidence 55543 34555555433222 222245555555554332 22222 33445577788887777776
Q ss_pred HHHhc
Q 005628 482 KLRTS 486 (687)
Q Consensus 482 ~M~~~ 486 (687)
+-...
T Consensus 247 ~g~~~ 251 (260)
T 3jxi_A 247 REIAD 251 (260)
T ss_dssp HHHHH
T ss_pred hCCCc
Confidence 65443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=55.22 E-value=66 Score=33.52 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----ccCCCChhHHHHHH
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-----SVRKVSPSTADVIA 499 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-----~~~g~~p~t~~~I~ 499 (687)
...++..+...|+.++|......+... -..+...|..||.+|.+.|+..+|++.|++... -+..|+|.+-.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455778888999999999988888654 345888999999999999999999999998765 33344444655555
Q ss_pred HHHcC
Q 005628 500 KWFNS 504 (687)
Q Consensus 500 ~~~~~ 504 (687)
.....
T Consensus 253 ~il~~ 257 (388)
T 2ff4_A 253 RILRQ 257 (388)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 54443
No 242
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=54.34 E-value=82 Score=25.17 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 421 d~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...+..+-.++...++ .++|..++++..+. .| ++.....|-..+.+.|++++|...++++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555666666654444 79999999999875 34 4556666667889999999999999999988
No 243
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.57 E-value=15 Score=35.55 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-CCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHH
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSL-GINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRV 466 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~ 466 (687)
.+...+..|+.+-+..++ +. |..++. .-.++|. ..+..|+.....++.+.+.+.|..++... -.+.+..
T Consensus 151 ~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILL----DEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 344445556654433333 33 444433 2233333 33445555555566666667766554321 1233444
Q ss_pred HHhcCChHHHHHHHH
Q 005628 467 SVEAGKGDRVYYLLH 481 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~ 481 (687)
.++.|..+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 456666655544444
No 244
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=52.41 E-value=17 Score=34.28 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=63.5
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHh
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCN 434 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~--tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~ 434 (687)
+...+..|..+ +++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++.... .+.+...++
T Consensus 115 L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 186 (237)
T 3b7b_A 115 MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAAR 186 (237)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 33444556643 444455556554322 1123344455667654 45555566766655331 234555667
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+.+- .+.+.+.|..++... -.+-+...+..|+.+.+.++.+.+.+.
T Consensus 187 ~~~~~~----v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 187 ENRYDC----VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred hCCHhH----HHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777654 445556666554321 123445557778888888888887764
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=51.85 E-value=33 Score=30.21 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+-++.+....+.|+..+..+.+++|-+.+++.-|.++|+-++.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444555556667777777777777777777777777777777665
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=51.63 E-value=50 Score=29.70 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=70.7
Q ss_pred ChhhhHHHHHHHHHhhccH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHHcCChHHHHHHHHHHHHc
Q 005628 350 DNQDADEIRLSEDAKKYAF------QRGFEIYEKMCLDEVPMNEA-SLTAVGR------MAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~------~~A~~lf~~M~~~gi~pd~~-tyn~LI~------~~~~~g~~~~A~~l~~~M~~~ 416 (687)
|-.+|-. .+.-.-+.|+. ++..++|++-.. .++|+.. .|-.-|. .+-..+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~-yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLS-LLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHH-HHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3345555 55666666877 888888887765 3555421 1111111 112248999999999999876
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
+-+- ...|-..-.-=.+.|++..|.+++......+.+|.. ..++.|+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence 3222 444444444556899999999999999988776554 3333333
No 247
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=50.44 E-value=2.2e+02 Score=28.90 Aligned_cols=130 Identities=4% Similarity=-0.070 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC-hHHHHHH
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD-VDKACSV 444 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~-~~~A~~l 444 (687)
+++++.+++.+.... +-+..+|+.---.+.+.| .+++++.+++.+.+... -|...|+----.+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 688999999988754 347788888777788888 48999999999988632 355666666666777788 5899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhccCCCChh-HHHHHHHHH
Q 005628 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWF 502 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~--------------g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~ 502 (687)
++.+.+.... |...|+..-..+.+. +.++++++.+.+.... .|... .|+-..+++
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 9999987643 777787666665554 4577888888888776 33333 555444443
No 248
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=49.52 E-value=83 Score=31.54 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=72.6
Q ss_pred HHHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhC-----CChHHHHHHHHHHH
Q 005628 387 EASLTAVGRM-AMSM--GD------GDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNN-----GDVDKACSVEEHML 449 (687)
Q Consensus 387 ~~tyn~LI~~-~~~~--g~------~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~-----g~~~~A~~l~~~M~ 449 (687)
...|..++.+ +... |+ ...|..++++..+ +.|+ -..|..|-..|.+. |+.++|.+.|++.+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 4556666653 3332 33 2345555555444 3465 56889999999994 99999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCC
Q 005628 450 EHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVS 491 (687)
Q Consensus 450 ~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~g~~ 491 (687)
+-+-.-+..++...-+.+|.. |+.+++.++|++-... .+.
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a--~p~ 272 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI--DPE 272 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC--CGG
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--CCC
Confidence 854222478888888999995 9999999999999887 444
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.02 E-value=1.8e+02 Score=34.96 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=93.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---------------- 421 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---------------- 421 (687)
++..+.+.+..+-|.++..-.. -+...-=.+-.+|...|++++|.+.|.+-- .|+..+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccccc
Confidence 4555666666666665544332 244433334456777999999999997531 122111
Q ss_pred -------cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 005628 422 -------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490 (687)
Q Consensus 422 -------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~ 490 (687)
..=|.-++.-|-+.+..+.+.++-....+..-.-+ ...|..+++++...|++++|+..+-.+.+. ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--PL 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HH
Confidence 01267788888889999988887766554322112 125889999999999999999999998877 55
Q ss_pred ChhH-HHHHHHHHcCHHH
Q 005628 491 SPST-ADVIAKWFNSKEA 507 (687)
Q Consensus 491 ~p~t-~~~I~~~~~~~~~ 507 (687)
.-+. ...|..+|+.+..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 5663 3448888876654
No 250
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.63 E-value=52 Score=32.22 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=48.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
.+...+..|..+ +++.+.+.|..+ +...-.+.+...+..|+.+-+..+++.-..-.. .|..-+++.+...++.|
T Consensus 132 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 132 SFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHT
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcC
Confidence 334445566644 444444445433 221234455566677887766666554222211 22333444455556666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
+. ++.+.+.+.|..|+...
T Consensus 207 ~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 207 DI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CH----HHHHHHTTSCBCSTTTT
T ss_pred CH----HHHHHHHHcCCCCCCCC
Confidence 64 45566677787777654
No 251
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=47.12 E-value=6.2 Score=24.48 Aligned_cols=11 Identities=64% Similarity=1.498 Sum_probs=9.1
Q ss_pred eeCC-CCCCCCC
Q 005628 677 YATP-TGSNDDW 687 (687)
Q Consensus 677 y~tp-~~~nDDw 687 (687)
|.-| +|+.|||
T Consensus 3 yq~~~~G~DDDW 14 (31)
T 3lge_E 3 YQGPATGDDDDW 14 (31)
T ss_pred ccCCCCCCcccc
Confidence 5566 8999999
No 252
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.74 E-value=13 Score=34.88 Aligned_cols=117 Identities=12% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---y~~lI~~ 431 (687)
.+...+..|..+ +++.+.+.|..++. .-.+.|..+..+ +...+.. +.+.+.|..++... -.+.+..
T Consensus 112 ~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~---~~L~~~~~~~~~~~~~~g~t~L~~ 183 (240)
T 3eu9_A 112 CIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPT---RLLLTFNVSVNLGDKYHKNTALHW 183 (240)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTH---HHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred HHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHH---HHHHhcCCCcchhhccCCCcHHHH
Confidence 334445666654 44444445554432 233444444434 3333333 33344565555433 2245566
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+..|+.+-+. .+.+.|..++.... .+-+...++.|+.+-+..+++.....
T Consensus 184 A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 184 AVLAGNTTVIS----LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHTCHHHHH----HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 66778766444 44445665543221 23455557778887777776655443
No 253
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.46 E-value=71 Score=27.60 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCC
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYP 455 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~~gv~p 455 (687)
.+.+|.-|...|+.++|.+.++++..-.+ -....+..+..++=+.++ .+....++..+...|+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34566666666666666666666542111 112233334444444332 244556666665555443
No 254
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=42.75 E-value=29 Score=32.39 Aligned_cols=110 Identities=21% Similarity=0.206 Sum_probs=52.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVF 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~ 432 (687)
.+...+..|..+ +++.+.+.|..++. .-++. +...+..|+.+ +++.+.+.|..++.... .+.+...
T Consensus 43 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 43 ALHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSP-LHIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCH-HHHHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 344445666644 33444445554432 22233 34445566654 44444556655544321 2344445
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHH
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLL 480 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll 480 (687)
+..|+.+-+ +.+.+.|..++... -.+.+...+..|..+-+..++
T Consensus 114 ~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 114 ASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 566765543 44445565554321 123344445666666444444
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=42.43 E-value=3.4e+02 Score=30.95 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=44.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~ 414 (687)
..+...|+++-|+++-++-.. +.|+ -.||-.|...|.+.|+++.|+-.++.|.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567899999999988775 3565 5699999999999999999999998874
No 256
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.14 E-value=1.4e+02 Score=28.70 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
++...-...+..+.+-|+.++|..+|=+.+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344444455555555555555555554443
No 257
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=38.49 E-value=2.1e+02 Score=27.96 Aligned_cols=212 Identities=14% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCC
Q 005628 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (687)
Q Consensus 195 n~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g 274 (687)
...|...++.|+.+....++......--..|..-.+.|..++. .|+.+-+..+++ .|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~-----------~g~~~~v~~Ll~------------~g 81 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG-----------YNRVRIVQLLLQ------------HG 81 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHH-----------TTCHHHHHHHHH------------TT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH-----------cCCHHHHHHHHH------------cC
Q ss_pred CC-Cccc--hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc---ccchhhHhhccccccCCCcchhcccCCC
Q 005628 275 MD-NNGQ--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH---MKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 275 ~~-d~~t--yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~---ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
.. +... -.+.+.. .+..|..+ +++.+.+.|..++.. -++
T Consensus 82 ~~~~~~~~~g~t~L~~------A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t------------------------- 126 (351)
T 3utm_A 82 ADVHAKDKGGLVPLHN------ACSYGHYE----VTELLLKHGACVNAMDLWQFT------------------------- 126 (351)
T ss_dssp CCTTCCCTTCCCHHHH------HHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-------------------------
T ss_pred CCCCccCCCCCcHHHH------HHHCCCHH----HHHHHHHCCCCCCCCCCCCCC-------------------------
Q ss_pred CChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC------------------------HHHHHHHHHHHHHcCChH
Q 005628 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN------------------------EASLTAVGRMAMSMGDGD 404 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd------------------------~~tyn~LI~~~~~~g~~~ 404 (687)
.+...+..|. .++++.+.+.|..|+ ......++.+........
T Consensus 127 ---------~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (351)
T 3utm_A 127 ---------PLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAK 193 (351)
T ss_dssp ---------HHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHH
Q ss_pred -------------------------------HHHHHHHHHHHcCCCCCcchH--HHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 405 -------------------------------MAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 405 -------------------------------~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.-.++++.+.+.|..++.... .+.+...++.|+. ++.+.+.+.
T Consensus 194 ~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~ 269 (351)
T 3utm_A 194 VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN----DVMEVLHKH 269 (351)
T ss_dssp HHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHT
T ss_pred HHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH----HHHHHHHHC
Q ss_pred CCCCCHHHH--HHHHHHHHhcCChHHHHHHHH
Q 005628 452 GVYPEEPEL--EALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 452 gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~ 481 (687)
|..++.... .+-+...+..|..+-+..|++
T Consensus 270 ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301 (351)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
No 258
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.03 E-value=51 Score=30.17 Aligned_cols=28 Identities=7% Similarity=-0.267 Sum_probs=15.2
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
.+..|..+.-.++.+-+.+.|..||...
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn~~d 72 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIKSRT 72 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSSCCC
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCCCCC
Confidence 3444555444555555666666665543
No 259
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.43 E-value=63 Score=28.89 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCC
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYP 455 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~~gv~p 455 (687)
.+.+|.-|...|+.++|.+.++++..-.+ -....+..+..++=+.++ .+.+..++..+...|+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45566666666666666666666542111 112233344444444322 344556666666555443
No 260
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.12 E-value=57 Score=30.99 Aligned_cols=30 Identities=17% Similarity=-0.008 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (687)
+.|...++.|+.+....+++.+.+.|..++
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 345556777888877777777777776554
No 261
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=37.05 E-value=37 Score=32.84 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIK 223 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~ 223 (687)
+.|...++.|+++....+++...+.+..
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 42 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKR 42 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccc
Confidence 3444556778887777777776665543
No 262
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.81 E-value=1.3e+02 Score=27.85 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS---------------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t---------------yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
.+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.
T Consensus 78 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~ 149 (232)
T 2rfa_A 78 ALHIAVINQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI----VRLLIEHGADIRA 149 (232)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHH----HHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCC
Confidence 334445667754 4444455565554421 2334455566677654 4444556766654
Q ss_pred ch--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 423 RS--YGPALSVFCNNGDVDKACSVEEHMLEHGVYP---------EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 423 ~t--y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p---------d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
.. -.+.+...+..|+.+-+..+++.+.+.|..+ |..-++ -+...++.|..+-+..|++.=.
T Consensus 150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCc
Confidence 32 2345666778899998888888888887644 233333 3444567777776666665543
No 263
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.61 E-value=47 Score=33.68 Aligned_cols=231 Identities=12% Similarity=-0.013 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 195 n~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~---~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
.+.|...++.|+++....++ +.|..++. .-++.|..++. .|+.+-+.-+++
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~-----------~g~~~~v~~Ll~----------- 74 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACK-----------FGCVDTAKYLAS----------- 74 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHH-----------HCCHHHHHHHHH-----------
T ss_pred CCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHH-----------cCCHHHHHHHHH-----------
Confidence 44555667778876655554 45665543 22445554444 455655555553
Q ss_pred cCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcccccc-CCCcchhcccCCCC
Q 005628 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE-RGPDDQSRKKDWSI 349 (687)
Q Consensus 272 ~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a-~~~~~~m~~~g~~p 349 (687)
. |.. +...-.+.+.. .+..|+.+-+..+++.-...|..|+..... ..... ..+.... .
T Consensus 75 ~-g~~~~~~~g~t~L~~------A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------~ 134 (364)
T 3ljn_A 75 V-GEVHSLWHGQKPIHL------AVMANKTDLVVALVEGAKERGQMPESLLNE-------CDEREVNEIGSHV------K 134 (364)
T ss_dssp H-CCCCCCBTTBCHHHH------HHHTTCHHHHHHHHHHHHHHTCCHHHHHTC-------CCCCCEEEETTEE------E
T ss_pred C-CCCccccCCCCHHHH------HHHcCCHHHHHHHHHhccccCCCHHHHHhh-------cchHhhhhhcccc------C
Confidence 1 222 22222223333 467788888877777766667665542111 00000 0000000 0
Q ss_pred ChhhhHHHHHHHHHhhc--cHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCc--
Q 005628 350 DNQDADEIRLSEDAKKY--AFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKS-LGINPRL-- 422 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~gi~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~-- 422 (687)
|..-+ + .+...+..| ..+-+..+ .+.|..++... -.+.+...+..|+.+-+..+++.-.. .++.++.
T Consensus 135 ~~~g~-t-~L~~A~~~g~~~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 208 (364)
T 3ljn_A 135 HCKGQ-T-ALHWCVGLGPEYLEMIKIL----VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208 (364)
T ss_dssp EESCC-C-HHHHHHHSCGGGHHHHHHH----HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred CCCCC-C-HHHHHHHcCCchHHHHHHH----HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccC
Confidence 00011 2 333445556 54433333 33355444321 12344455677877655555543211 0111332
Q ss_pred -chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHH
Q 005628 423 -RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 423 -~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.-+++ |...+..|+.+ +.+.+.+.|..++.... .+-+...+..|..+-+..|++.
T Consensus 209 ~~g~t~-L~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 209 KQGNSH-LHWAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCT-THHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 22333 44556777765 44555566766553221 1233444666777666655554
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.38 E-value=4e+02 Score=27.98 Aligned_cols=192 Identities=5% Similarity=-0.010 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc
Q 005628 205 GDVMGAIRLYDKAQRE-----GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 205 g~~~~A~~lf~~M~~~-----Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
|++++|++.+-.+.+. ...-.......++..|. +.|+++...+.+.++
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~----------~~~~~~~l~e~i~~L----------------- 82 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLA----------SRNKWDDLNEQLTLL----------------- 82 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHH----------HHSCHHHHHHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHH----------HhccHHHHHHHHHHH-----------------
Confidence 6788888877666642 34456777888888888 566666665555322
Q ss_pred chhccccccccccccccCCChhhH--------HHHHHHHHhcCCCCCccccchhhHhhcccccc-CCCcchhcccCCCCC
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDL--------DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE-RGPDDQSRKKDWSID 350 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A--------~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a-~~~~~~m~~~g~~pd 350 (687)
.-+.|....| ...+.++. .+|..+.- .++....... ..+|-+..+.
T Consensus 83 --------------skkr~qlk~ai~~~V~~~~~~l~~~~----~~d~~~~~--~~i~~l~~vte~kiflE~era----- 137 (445)
T 4b4t_P 83 --------------SKKHGQLKLSIQYMIQKVMEYLKSSK----SLDLNTRI--SVIETIRVVTENKIFVEVERA----- 137 (445)
T ss_dssp --------------HTTTTTSHHHHHHHHHHHHHHHHHHC----TTHHHHHH--HHHHCCSSSSSCCCCCCHHHH-----
T ss_pred --------------HHHhhhhHHHHHHHHHHHHHHHhcCC----chhHHHHH--HHHHHHHHHhccchHHHHHHH-----
Confidence 1122333222 22222221 12333333 4555544222 2233332221
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKS----LGINPR 421 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd---~~tyn~LI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd 421 (687)
-....|...|-..|++.+|.+++.++... |.... +..|.-.++.|...+++..|..+++.... ....|+
T Consensus 138 --rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 138 --RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 11233778899999999999999998743 32222 35677888899999999999999988752 223333
Q ss_pred c--chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 422 L--RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 422 ~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
. .-|...+..+...+++.+|...|.+..+
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 4567777777888999999888777654
No 265
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=34.64 E-value=17 Score=35.89 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCC-CCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhh
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR---------EGI-KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~---------~Gi-~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~ 261 (687)
....+.++..+..|+.++..++...... .++ ..|..-++.|..++. .|+.+-...++.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~-----------~g~~~~v~~Ll~- 80 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAI-----------HGHQLSLRNLIS- 80 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHH-----------TTCHHHHHHHHH-
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHH-----------cCCHHHHHHHHH-
Confidence 4566788888899998877775544322 111 122223344444443 566655555553
Q ss_pred cccccccccccCCCC----CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCC
Q 005628 262 STMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (687)
Q Consensus 262 ~~~~s~em~~~~g~~----d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~ 337 (687)
. |.. |..-++.|.- .+..|..+-+. .+.+.|..++.....
T Consensus 81 ----------~-g~~~~~~~~~g~t~L~~-------A~~~g~~~~v~----~Ll~~ga~~~~~~~~-------------- 124 (285)
T 3d9h_A 81 ----------Q-GWAVNIITADHVSPLHE-------ACLGGHLSCVK----ILLKHGAQVNGVTAD-------------- 124 (285)
T ss_dssp ----------T-TCCSCEECTTCCCHHHH-------HHHTTCHHHHH----HHHHTTCCSSCCCTT--------------
T ss_pred ----------C-CCCCCCcCCCCCCHHHH-------HHHCCcHHHHH----HHHHCCCCCCCCCCC--------------
Confidence 1 322 2222333333 35556655443 344456655544332
Q ss_pred CcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t-yn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
| + + .+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.
T Consensus 125 --------g-------~-t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ 179 (285)
T 3d9h_A 125 --------W-------H-T-PLFNACVSGSWD----CVNLLLQHGASVQPESDLASPIHEAARRGHVEC----VNSLIAY 179 (285)
T ss_dssp --------C-------C-C-HHHHHHHHTCHH----HHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHH----HHHHHHT
T ss_pred --------C-------C-C-HHHHHHHcCHHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHC
Confidence 0 0 1 233344556654 3344444454432111 2344555566677654 4444456
Q ss_pred CCCCCcchH--HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 005628 417 GINPRLRSY--GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 417 g~~Pd~~ty--~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
|..++.... .+.|...+..|+.+- ++.+.+.|..++.. .-.+.+...++.|..+-+..|++
T Consensus 180 g~~~~~~d~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 180 GGNIDHKISHLGTPLYLACENQQRAC----VKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp TCCTTCCBTTTBCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 655544321 234555567777644 44445556655421 11244555577777765544443
No 266
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.00 E-value=14 Score=34.71 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=58.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVF 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~ 432 (687)
.+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++.. -.++|..++
T Consensus 79 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~ 150 (240)
T 3eu9_A 79 PLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAA 150 (240)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHH
Confidence 344455667654 4444455565554321 123455566778765 444555567665543 345666655
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHH
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPE---LEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~t---y~~Li~~~~~~g~~~~A~~ll~ 481 (687)
.+.+..+ +.+.+.+.|..++... -.+.+...+..|..+-+..+++
T Consensus 151 ~~~~~~~----~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 151 YRTHSVD----PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HHCCSST----THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HhCChHH----HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 5544332 3334455555544322 2245566678888876555554
No 267
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=33.55 E-value=42 Score=29.43 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=58.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty--n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~ 433 (687)
.+...++.|+.+....+++. .+..++.... .+.+...+..|+.+ +++.+.+.|..++.... .+.+...+
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 44455677887766666543 2222222111 24455556777754 44555566766655433 23455556
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll 480 (687)
..|+.+ +.+.+.+.|..++.... .+.+...+..|..+-+..++
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 84 SYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 677765 44455556666543221 13344446667666444443
No 268
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=32.71 E-value=2.3e+02 Score=24.29 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH---HHHHHHHHHHCCCCC-CHHHHH-HHHHHHHhcCChHH
Q 005628 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK---ACSVEEHMLEHGVYP-EEPELE-ALLRVSVEAGKGDR 475 (687)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~---A~~l~~~M~~~gv~p-d~~ty~-~Li~~~~~~g~~~~ 475 (687)
..+..+.+-+......|. |+..+--.+--++.+..+... +..+++++...+ .| +...|. .|--|+.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334455556665555454 455554445556777766555 999999988764 23 233333 34457799999999
Q ss_pred HHHHHHHHHhc
Q 005628 476 VYYLLHKLRTS 486 (687)
Q Consensus 476 A~~ll~~M~~~ 486 (687)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999988
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.68 E-value=1.6e+02 Score=24.49 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=21.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|++++|..+.+.+ +.||.+.|-+|-. .+.|..+++..-+.+|..+
T Consensus 51 mNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 51 MNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444444444444333 3444444444432 2444444444444444443
No 270
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.27 E-value=67 Score=28.98 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=7.6
Q ss_pred HHHHHHHHHCCCCCC
Q 005628 442 CSVEEHMLEHGVYPE 456 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd 456 (687)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555444
No 271
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.33 E-value=2e+02 Score=27.61 Aligned_cols=102 Identities=8% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~p----d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (687)
-++.+....++++|.+++++.++. ++++ +.......|..-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788889999999999887652 3332 112233344444444455556666666633 4566667778899
Q ss_pred HHhCCChHHHHHHHHHHHH---------CCCCCCHHHHHH
Q 005628 432 FCNNGDVDKACSVEEHMLE---------HGVYPEEPELEA 462 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~---------~gv~pd~~ty~~ 462 (687)
+.+.|+.++|.++|=+... -+..-|...|..
T Consensus 101 L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~ 140 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLT 140 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 9999999999999865432 244455555543
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.07 E-value=3.9e+02 Score=27.82 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=71.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCc----chHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~----~ty~~l 428 (687)
+-..|++.|++++|.++|.++... +..--...|-.+|+.+...+++..|...+...... +-.|+. ..|..+
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl 216 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI 216 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 778899999999999999999874 33334567888899999999999999999887643 322332 223333
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (687)
+ +...+++..|...|-+....--..+...+.
T Consensus 217 ~--~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~ 247 (429)
T 4b4t_R 217 H--CLAVRNFKEAAKLLVDSLATFTSIELTSYE 247 (429)
T ss_dssp G--GGGTSCHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred H--HHHhChHHHHHHHHHHHhccCCccchhhHH
Confidence 3 234688888888887776543333444433
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=30.74 E-value=1.7e+02 Score=24.31 Aligned_cols=78 Identities=17% Similarity=0.036 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005628 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
..++|.-|-+-+...|. .+++--+=+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 67899999999988764 3333333344678899999999988754 4799999987754 47788888888887
Q ss_pred HHHHCC
Q 005628 447 HMLEHG 452 (687)
Q Consensus 447 ~M~~~g 452 (687)
+|..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 887766
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.55 E-value=1.5e+02 Score=25.50 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=49.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD--GDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
+|.-|...|+.++|.+.++++..... -..+++.++..++-+.++ .+....++..+...|+ .|=..+..||
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~----is~~q~~~Gf 84 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST----ITIDQMKRGY 84 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC----SCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC----cCHHHHHHHH
Confidence 88999999999999999999963221 235666777777777643 4667888888877654 4445555554
No 275
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=29.89 E-value=1.4e+02 Score=28.77 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=39.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhc
Q 005628 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEA 470 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~ 470 (687)
..+..+..+ +++.+.+.|..|+... +++|. ..+..|+.+-+. .+.+.|..+|.... .+.+...+..
T Consensus 125 ~a~~~~~~~----~~~~Ll~~g~~~n~~d~~g~TpL~-~A~~~g~~~~v~----~Ll~~gadvn~~~~~g~t~Lh~A~~~ 195 (269)
T 4b93_B 125 LACQQGHFQ----VVKCLLDSNAKPNKKDLSGNTPLI-YACSGGHHELVA----LLLQHGASINASNNKGNTALHEAVIE 195 (269)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCSCCCCTTCCCHHH-HHHHTTCGGGHH----HHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred cccccChHH----HHHHHHHCCCCCCCCCCCCCCHHH-HHHHCCCHHHHH----HHHHCCCCCCccccCCCcHHHHHHHc
Confidence 344455543 4444455676665543 33444 445667765443 44456665543221 2334445677
Q ss_pred CChHHHHHHH
Q 005628 471 GKGDRVYYLL 480 (687)
Q Consensus 471 g~~~~A~~ll 480 (687)
|..+-+..|+
T Consensus 196 g~~~~v~~Ll 205 (269)
T 4b93_B 196 KHVFVVELLL 205 (269)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7776554444
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.15 E-value=1.6e+02 Score=24.48 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=21.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|++++|..+.+.+ +.||.+.|-+|-. .+.|..+++..-+.+|..+
T Consensus 50 mNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444444444444333 3444444444432 2444444444444444443
No 277
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.38 E-value=27 Score=33.44 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=71.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--HcCChHHHHHHHHHHHHcC---------CC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS-------LTAVGRMAM--SMGDGDMAFDMVKRMKSLG---------IN 419 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t-------yn~LI~~~~--~~g~~~~A~~l~~~M~~~g---------~~ 419 (687)
.+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 55566788998888888888887777666433 355554442 5688887777777643321 11
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHH
Q 005628 420 -PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE----------------LEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 420 -Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t----------------y~~Li~~~~~~g~~~~A~~ll~ 481 (687)
.|..-+++ |...+..|+.+ +.+.+.+.|..++... -.+.|...+..|..+-+..|++
T Consensus 88 ~~d~~g~t~-L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQTA-LHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCH-HHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11133344 45556778865 4455555677766543 2344555577888765555544
No 278
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.39 E-value=86 Score=27.23 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty--n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~ 433 (687)
.+...+..|.. ++++.+.+.|..++.... .+.+...+..|+.+ +++.+.+.|..++.... .+.+...+
T Consensus 45 ~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 116 (165)
T 3twr_A 45 PLHFAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAA 116 (165)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence 34445566775 444555556665543221 23445556777766 44445556766665432 13455566
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
..|+.+- .+.+.+.|..|+
T Consensus 117 ~~~~~~~----v~~Ll~~ga~~~ 135 (165)
T 3twr_A 117 AKGKYEI----CKLLLQHGADPT 135 (165)
T ss_dssp HTTCHHH----HHHHHHTTCCTT
T ss_pred HcCCHHH----HHHHHHcCCCCc
Confidence 7777654 444555666554
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.08 E-value=2.7e+02 Score=29.20 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHH----H
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---HGVYPEEP----E 459 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~gv~pd~~----t 459 (687)
++..+-+-|++.|++++|.+.+.++... +..--+..|-.+|..+...+++..+....+.... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888999999999999999999875 3333456788888999999999999988887643 33333322 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|..++ +...+++.+|...|.+....
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 22222 24578899999988887665
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.73 E-value=1e+02 Score=31.71 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~~gv~pd~~ 458 (687)
..+.+|.-|...|+.++|.+.++++..-.+.+ ...+.++..++=+.++ .+...+++..+...|+.+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46888888999999999999998885332222 2334555555555433 355778888888777665433
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.66 E-value=52 Score=32.25 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=59.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH---HHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty---~~lI~~ 431 (687)
.+...+..|..+ +++.+.+.|..++. .-++ .+...+..|+.+-+..++ +.|..++.... .+.+..
T Consensus 65 ~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~ 135 (285)
T 3kea_A 65 PLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYH 135 (285)
T ss_dssp HHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHH
Confidence 444455666654 33444455655442 2223 344456677765444444 44655554432 456666
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.+..|+.+-+ +.+.+.|..+... .-.+.+...+..|..+-+..|++.
T Consensus 136 A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 136 AVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 6777776544 4444555443221 334445555778888776666655
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.52 E-value=1.7e+02 Score=24.34 Aligned_cols=78 Identities=12% Similarity=-0.084 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005628 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
..++|.-|-+-+...|. .+++--+=+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 67899999999988764 3333333344678899999999988654 5799999987744 58898888888888
Q ss_pred HHHHCC
Q 005628 447 HMLEHG 452 (687)
Q Consensus 447 ~M~~~g 452 (687)
+|..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 887776
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=26.48 E-value=1.5e+02 Score=29.21 Aligned_cols=116 Identities=10% Similarity=0.073 Sum_probs=79.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhCCC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~~~g~ 437 (687)
....+.|.+++|++-...-.+.. +-|...=..|+..+|-.|+++.|..-++...+.. ..|-...|-.+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34568899999999988877764 4578888899999999999999999888877652 33444556555543
Q ss_pred hHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYP-----EEPELEALLRVSV--EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-----d~~ty~~Li~~~~--~~g~~~~A~~ll~~M~~~ 486 (687)
+..-.+...-+-.| ...-...|+.+.. ..|+.++|..+-.+..+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22223333333222 2334456666664 469999999988877655
No 284
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.00 E-value=19 Score=33.09 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=15.3
Q ss_pred cccccccccccccchhhhHhhhc
Q 005628 105 EKDGKRLTKDNNSRKNFAFLKSR 127 (687)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ 127 (687)
++.++++-|.....+.+..+|.+
T Consensus 108 E~ALRRFKRkveKeGIlrElRrR 130 (190)
T 3bbn_U 108 ERLLNRFRREVMRAGVIQECKRR 130 (190)
T ss_dssp CCCCCSSSTTTTTTHHHHSSSSC
T ss_pred HHHHHHHHHHHHHccHHHHHHHH
Confidence 55666677776666777776655
No 285
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=25.72 E-value=1e+02 Score=27.29 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhCCCh
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDV 438 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~~g~~ 438 (687)
..++.|+.+.+..+++.-...--.+|..-++ .+...+..|+.+ +++.+.+.|..++.... .+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 85 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFS-PLHWACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHR 85 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCCC-HHHHHHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 4467788777766665422111112333333 444556777764 44455566776665432 2345555667775
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHH
Q 005628 439 DKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll 480 (687)
+ +.+.+.+.|..++.... .+.+...+..|+.+-+..++
T Consensus 86 ~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 86 D----IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5 44555566766543321 23444456677765444443
No 286
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.62 E-value=92 Score=31.41 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=58.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc---------------
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------------- 422 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--------------- 422 (687)
.+...+..|..+-+. .+.+.|..++...-.+.+...+..|+.+-+..+++.-...|..|+.
T Consensus 56 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (364)
T 3ljn_A 56 ALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS 131 (364)
T ss_dssp HHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETT
T ss_pred HHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcc
Confidence 344445666654333 3333444444322233455566778887777777765555554443
Q ss_pred -----chHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHH
Q 005628 423 -----RSYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 423 -----~ty~~lI~~~~~~g--~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.-+++ |...+..| +.+-+ +.+.+.|..++... ..+.+...+..|..+-+..|++.
T Consensus 132 ~~~~~~g~t~-L~~A~~~g~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 132 HVKHCKGQTA-LHWCVGLGPEYLEMI----KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp EEEEESCCCH-HHHHHHSCGGGHHHH----HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCCCCCH-HHHHHHcCCchHHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 22334 44445556 54433 33444455544322 12334444667777665555553
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.01 E-value=1.3e+02 Score=26.86 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD--GDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
+|.-|...|+.++|.+.++++..... -..+++.++..++-+.++ .+.+..++..+...|+ .|=..+..||
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~----is~~q~~~Gf 86 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST----ITIDQMKRGY 86 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC----SCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC----cCHHHHHHHH
Confidence 88999999999999999999963211 235666777777776433 4567788888877643 4445555555
No 288
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.53 E-value=3.5e+02 Score=32.38 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=80.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCC-----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPM-----------------------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p-----------------------d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
..|...|++++|.+.|.+... |+.. -..=|.-++..|-+.+.++.+.++-..-.+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567789999999999976421 2211 1123677888888999999888776654433
Q ss_pred -C-CCCCc--chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005628 417 -G-INPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (687)
Q Consensus 417 -g-~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (687)
+ -.++. ..|..++.++...|++++|...+-.+.....+ ......||..+|..|..++
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 1 11222 25889999999999999999999888776554 4567778888887766543
No 289
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.45 E-value=1.1e+02 Score=28.19 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=62.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~ 434 (687)
.+...++.|+++....+++.-...--.+|..-++. +...+..|+.+- ++.+.+.|..++.. -+++| ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 55667788999888888876432111223333333 444566777654 44455667666543 33444 45566
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHH
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLL 480 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll 480 (687)
.|+.+ +++.+.+.|..++... ..+.+...+..|+.+-+..++
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 67765 4555566676554321 123444556777776555444
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.31 E-value=3.6e+02 Score=24.13 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=54.1
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHHh-CC
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGPALSVFCN-NG 436 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---y~~lI~~~~~-~g 436 (687)
.++.|+++....++.. ++.. +...-.+.+...+..|+.+.-.++.+.+.+.|..+|... +++|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 4577888776665543 3211 101123455566677777777778888888887776643 3455444333 23
Q ss_pred ChHHHHHHHHHHHHCCCCCCH
Q 005628 437 DVDKACSVEEHMLEHGVYPEE 457 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~ 457 (687)
++....++.+.+.+.|..+|.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSS
T ss_pred chhhHHHHHHHHHHCCCCCCc
Confidence 445556777777777776664
No 291
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=22.95 E-value=1.9e+02 Score=24.94 Aligned_cols=151 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHH
Q 005628 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (687)
Q Consensus 282 n~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (687)
.+.+.. .+..|+++....+++. ...=-.+|..-++ .+..
T Consensus 4 ~t~L~~------A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t----------------------------------~L~~ 42 (167)
T 3v31_A 4 SLSVHQ------LAAQGEMLYLATRIEQ-ENVINHTDEEGFT----------------------------------PLMW 42 (167)
T ss_dssp CCCHHH------HHHTTCHHHHHHHHHH-SSCTTCCCTTSCC----------------------------------HHHH
T ss_pred cchHHH------HHHCCCHHHHHHHHHc-CCCcCCCCCCCCC----------------------------------HHHH
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhCCC
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGD 437 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~~g~ 437 (687)
.+..|. .++++.+.+.|..++..... +.+...+..|+.+-+..+++. |..++.... .+.+...+..|+
T Consensus 43 A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~ 114 (167)
T 3v31_A 43 AAAHGQ----IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC----GVDVNEYDWNGGTPLLYAVHGNH 114 (167)
T ss_dssp HHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHCCC----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCcCCCCCCCHHHHHHHcCC
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 438 VDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.+ +.+.+.+.|..|+.... .+-+...+..|..+-+..+++...+
T Consensus 115 ~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 115 VK----CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
No 292
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.94 E-value=46 Score=31.67 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=68.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCC--------
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSM---GDGDMAFDMVKRMKSLGIN-------- 419 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~tyn~LI~~~~~~---g~~~~A~~l~~~M~~~g~~-------- 419 (687)
.+...++.|+.+....+++.+.+.|..++. .-++.| ...+.. |+.+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 455567888888887888888777766543 334444 444555 8887777777654443211
Q ss_pred --CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH---------------HHHHHHHHHhcCChHHHHHHHH
Q 005628 420 --PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE---------------LEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 420 --Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t---------------y~~Li~~~~~~g~~~~A~~ll~ 481 (687)
.|..-+++ |...+..|+.+-+ +.+.+.|..++... -.+.|...+..|..+-+..|++
T Consensus 84 ~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 84 TDEFYQGHSA-LHIAIEKRSLQCV----KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CSTTTTTCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCH-HHHHHHcCCHHHH----HHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11233444 4455667776544 44555676665442 2244455567787765555544
No 293
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.66 E-value=1.5e+02 Score=22.77 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCH
Q 005628 446 EHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (687)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g-~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~ 505 (687)
+.|.+.|+.++..- ..++..+...+ ..-.+.++.+.+.+...++++. .|..|..+.+.|
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44667888877655 45666666554 4556788888888876667776 466677664433
No 294
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=22.33 E-value=42 Score=31.82 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---y~~lI~~ 431 (687)
.+...++.|+.+-+ +.+.+.|..++. .-.+ .|...+..|+.+-+..++ +.|..++... +++ +..
T Consensus 40 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~tp-L~~ 109 (239)
T 1ycs_B 40 LLLDSSLEGEFDLV----QRIIYEVDDPSLPNDEGIT-ALHNAVCAGHTEIVKFLV----QFGVNVNAADSDGWTP-LHC 109 (239)
T ss_dssp HHHHHHHHTCHHHH----HHHTSTTSSCCCCCTTSCC-HHHHHHHHTCHHHHHHHH----HHTCCTTCCCTTCCCH-HHH
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCCH-HHH
Confidence 44445556665433 333344433322 2222 333444556654444333 3354444332 233 333
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
.+..|+.+ +.+.+.+.|..++
T Consensus 110 A~~~~~~~----~v~~Ll~~ga~~~ 130 (239)
T 1ycs_B 110 AASCNNVQ----VCKFLVESGAAVF 130 (239)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCHH----HHHHHHHcCCCcc
Confidence 44556543 3344445555544
No 295
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.50 E-value=3.3e+02 Score=22.77 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-LGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
+.+|+.-+++.... .+|......+|..+-.+ ++.|+++.+...+ .|+ +..++.-++..+.+.|-++.. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 45566666665443 45777777777665443 4555555555443 466 467777777777777766555 4555
Q ss_pred HHH
Q 005628 447 HML 449 (687)
Q Consensus 447 ~M~ 449 (687)
.|.
T Consensus 77 ~m~ 79 (119)
T 1wty_A 77 EML 79 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 296
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.11 E-value=1.4e+02 Score=28.85 Aligned_cols=111 Identities=17% Similarity=0.080 Sum_probs=57.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~ 433 (687)
.+...+..|..+-+ +.+.+.|..++. .-++. +...+..|+.+- ++.+.+.|..++... ..+.+...+
T Consensus 95 ~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~ 165 (285)
T 3d9h_A 95 PLHEACLGGHLSCV----KILLKHGAQVNGVTADWHTP-LFNACVSGSWDC----VNLLLQHGASVQPESDLASPIHEAA 165 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCH-HHHHHHHTCHHH----HHHHHHTTCCSSCSCTTSCHHHHHH
T ss_pred HHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCH-HHHHHHcCHHHH----HHHHHHCCCCCCCCCCCCCHHHHHH
Confidence 34444567776544 444445655432 22333 444556677654 444455665544322 234455566
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll~ 481 (687)
..|+.+- .+.+.+.|..++... -.+.+...+..|..+-+..|++
T Consensus 166 ~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 166 RRGHVEC----VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHTCHHH----HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHH----HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 7787654 445556666554321 1234455577788765555554
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.83 E-value=2.4e+02 Score=24.47 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCH
Q 005628 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~ 505 (687)
.+.|.+.|++++..= ..+++.+...+..-.|.++++.+.....++++. .|..|..+...|
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 345777888877543 345666666677778999999999886667776 578888775554
No 298
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=20.80 E-value=2e+02 Score=25.21 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=47.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~ 433 (687)
.+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++.... .+.+...+
T Consensus 42 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 113 (179)
T 3f6q_A 42 PLHWACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHRD----IVQKLLQYKADINAVNEHGNVPLHYAC 113 (179)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 444556677754 4445555566554321 123445556677765 44445566766655432 23455556
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
..|+.+ +.+.+.+.|..++
T Consensus 114 ~~~~~~----~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 114 FWGQDQ----VAEDLVANGALVS 132 (179)
T ss_dssp HTTCHH----HHHHHHHTTCCSS
T ss_pred HcCCHH----HHHHHHHCCCCcc
Confidence 777754 4445556666554
Done!