Your job contains 1 sequence.
>005629
MRTRQDSKTQKDQASGKESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSR
SKKQDCAVGLTTSVLKVSGKQEVDKRVTWSDVDAHGCSRDAMGNTLRELDEGRLQDNVLD
GGEEMYDSDWEDGSIPVACSKENHPESDIKGVTIEFDAADSVTKKPVRRASAEDKELAEL
VHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISEVSKLTANALSPIVSWFHD
NFHVRSSVSTRRSFHSDLAHALESREGTPEEIAALSVALFRALKLTTRFVSILDVASLKP
EADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENVCETSSKGSPEC
KYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEM
QLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSR
KVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGA
KDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLE
DMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQ
TLKTKERWLREALQVKANEVPVKVCSG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005629
(687 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174160 - symbol:RAD4 species:3702 "Arabidopsi... 882 4.1e-149 2
MGI|MGI:103557 - symbol:Xpc "xeroderma pigmentosum, compl... 472 2.2e-42 1
RGD|1305760 - symbol:Xpc "xeroderma pigmentosum, compleme... 401 3.6e-34 1
UNIPROTKB|Q01831 - symbol:XPC "DNA repair protein complem... 375 2.9e-31 1
UNIPROTKB|E9PH69 - symbol:XPC "DNA repair protein-complem... 369 1.2e-30 1
UNIPROTKB|E1BDJ1 - symbol:XPC "Uncharacterized protein" s... 250 2.8e-30 2
UNIPROTKB|F1N806 - symbol:Gga.54220 "Uncharacterized prot... 362 1.3e-29 2
UNIPROTKB|F1SPI2 - symbol:XPC "Uncharacterized protein" s... 236 1.5e-29 2
UNIPROTKB|E1BUG1 - symbol:Gga.54220 "Uncharacterized prot... 362 2.3e-29 2
UNIPROTKB|E2RCR3 - symbol:XPC "Uncharacterized protein" s... 247 7.8e-28 2
ZFIN|ZDB-GENE-030131-8461 - symbol:xpc "xeroderma pigment... 233 8.1e-27 2
FB|FBgn0004698 - symbol:mus210 "mutagen-sensitive 210" sp... 200 1.5e-17 2
ASPGD|ASPL0000010029 - symbol:AN3890 species:162425 "Emer... 214 5.1e-17 2
WB|WBGene00022296 - symbol:xpc-1 species:6239 "Caenorhabd... 175 4.2e-14 4
POMBASE|SPAC12B10.12c - symbol:rhp41 "DNA repair protein ... 191 4.6e-13 2
CGD|CAL0004788 - symbol:orf19.6722 species:5476 "Candida ... 179 3.9e-12 2
DICTYBASE|DDB_G0292296 - symbol:xpc "DNA repair protein R... 123 4.3e-11 3
SGD|S000000964 - symbol:RAD4 "Protein that recognizes and... 134 6.3e-06 3
POMBASE|SPCC4G3.10c - symbol:rhp42 "DNA repair protein Rh... 109 0.00031 2
ASPGD|ASPL0000008254 - symbol:AN6186 species:162425 "Emer... 95 0.00044 4
TAIR|locus:2157869 - symbol:PNG1 "peptide-N-glycanase 1" ... 121 0.00095 1
>TAIR|locus:2174160 [details] [associations]
symbol:RAD4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
Pfam:PF01841 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003684 GO:GO:0006289 InterPro:IPR002931
KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135 EMBL:AY062755
EMBL:BT010359 IPI:IPI00534100 RefSeq:NP_001031894.1
RefSeq:NP_197166.2 UniGene:At.27241 ProteinModelPortal:Q8W489
STRING:Q8W489 PaxDb:Q8W489 PRIDE:Q8W489 EnsemblPlants:AT5G16630.1
EnsemblPlants:AT5G16630.2 GeneID:831525 KEGG:ath:AT5G16630
TAIR:At5g16630 HOGENOM:HOG000144515 InParanoid:Q8W489 OMA:QVDVWSE
PhylomeDB:Q8W489 ProtClustDB:CLSN2690169 Genevestigator:Q8W489
Uniprot:Q8W489
Length = 865
Score = 882 (315.5 bits), Expect = 4.1e-149, Sum P(2) = 4.1e-149
Identities = 197/359 (54%), Positives = 242/359 (67%)
Query: 346 KENVCETSSKGSPECKYSS--PKSNNTQSK-KSPVSCELSSGNLDPSSSMACSDISEACH 402
K + TS+ P+ + S PK +++ K KSP + GN S + + ++ +C
Sbjct: 275 KHGIFRTSTLMVPKQQAISSYPKKSSSHVKNKSPFE-KPQLGNPLGSDQVQDNAVNSSCE 333
Query: 403 P--KEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKK 460
KS +RKGD+EFE Q+ MALSAT +D N SS V K++++
Sbjct: 334 AGMSIKSDGTRRKGDVEFERQIAMALSAT----------AD----NQQSSQVNNTKKVRE 379
Query: 461 IE--SGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKV 518
I S SS S ISTA GS+KV +PL W EVYC+GEN+ GKWVHVDA N +ID EQ +
Sbjct: 380 ITKISNSSSVSDQVISTAFGSKKVDSPLCWLEVYCNGENMDGKWVHVDAVNGMIDAEQNI 439
Query: 519 EAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGA 578
EAAAAACKT LRY+VAFA GAKDVTRRYC KW+ I+SKRV+S WWD VLAPL LESGA
Sbjct: 440 EAAAAACKTVLRYVVAFAAGGAKDVTRRYCTKWHTISSKRVSSVWWDMVLAPLVHLESGA 499
Query: 579 TGD----------LN-VES--SAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQL 625
T D LN V S S+ S R++LEDMEL TRALTE LPTNQQAYK+H++
Sbjct: 500 THDEDIALRNFNGLNPVSSRASSSSSSFGIRSALEDMELATRALTESLPTNQQAYKSHEI 559
Query: 626 YVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKV 684
Y IE+WL+K QIL+PKGP+LGFCSGH VYPR+CVQTLKTKERWLR+ LQ+KANEVP K+
Sbjct: 560 YAIEKWLHKNQILHPKGPVLGFCSGHPVYPRTCVQTLKTKERWLRDGLQLKANEVPSKI 618
Score = 595 (214.5 bits), Expect = 4.1e-149, Sum P(2) = 4.1e-149
Identities = 148/331 (44%), Positives = 195/331 (58%)
Query: 31 SHNETGTLAETSREGVGKFLRHVNARSSSRSKKQDCAVGLTTSVLKVSGKQEVDKRVTWS 90
S ++ LA+ SR V K L +AR S KKQD V+GK K+
Sbjct: 5 SESKNCRLAQASRVAVNKVLDKSSARGSRGKKKQDDNCDSAKRDKGVNGK---GKQA--- 58
Query: 91 DVDAHGCSRDAMGNTLRELDEGRLQDNVLDGGEEMYDSDWEDGSIPVACSK-ENHPESDI 149
+DA + N L + G + D +EM DSDWED IP S +++ D
Sbjct: 59 -LDAR-----LIDNVLEDRGCGNVDD------DEMNDSDWEDCPIPSLDSTVDDNNVDDT 106
Query: 150 KGVTIEFD--AADSVTKKPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCDDPLIQA 207
+ +TIEFD D+ +K RA+AEDK AELVHKVHLLCLLARGR++DS C+DPLIQA
Sbjct: 107 RELTIEFDDDVPDAKKQKNAYRATAEDKVRAELVHKVHLLCLLARGRIVDSACNDPLIQA 166
Query: 208 XXXXXXXXXXXKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREG 267
K+S + K+T ++P++ W +NF V S S+ +SF + LA ALESR+G
Sbjct: 167 ALLSLLPSYLTKVSNLEKVTVKDIAPLLRWVRENFSVSCSPSSEKSFRTSLAFALESRKG 226
Query: 268 TPEEIAALSVALFRALKLTTRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMV 327
T EE+AAL+VAL RALKLTTRFVSILDVASLKP AD+N SS Q+ +++ GIF TLMV
Sbjct: 227 TAEELAALAVALLRALKLTTRFVSILDVASLKPGADRNESSGQNRAKMKHGIFRTSTLMV 286
Query: 328 AKPEEVLASPVKSFSCDKKENVCETSSKGSP 358
K + + + P KS S K ++ E G+P
Sbjct: 287 PKQQAISSYPKKSSSHVKNKSPFEKPQLGNP 317
>MGI|MGI:103557 [details] [associations]
symbol:Xpc "xeroderma pigmentosum, complementation group C"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281
"DNA repair" evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISO;IDA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI]
[GO:0071942 "XPC complex" evidence=ISO] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
MGI:MGI:103557 GO:GO:0005737 GO:GO:0042493 GO:GO:0003684
GO:GO:0003697 GO:GO:0010224 GO:GO:0006289 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 GeneTree:ENSGT00390000005194 InterPro:IPR018026
TIGRFAMs:TIGR00605 CTD:7508 HOGENOM:HOG000124671 HOVERGEN:HBG000407
OMA:MKRFNKE OrthoDB:EOG40CHGQ ChiTaRS:XPC EMBL:U27398 EMBL:AB071144
EMBL:AK004713 EMBL:AK028595 EMBL:AK166981 EMBL:U40005
IPI:IPI00124885 PIR:S70630 RefSeq:NP_033557.2 UniGene:Mm.2806
ProteinModelPortal:P51612 SMR:P51612 IntAct:P51612 STRING:P51612
PhosphoSite:P51612 PaxDb:P51612 PRIDE:P51612
Ensembl:ENSMUST00000032182 GeneID:22591 KEGG:mmu:22591
UCSC:uc009cyd.1 InParanoid:P51612 NextBio:302933 Bgee:P51612
CleanEx:MM_XPC Genevestigator:P51612 GermOnline:ENSMUSG00000030094
Uniprot:P51612
Length = 930
Score = 472 (171.2 bits), Expect = 2.2e-42, P = 2.2e-42
Identities = 183/725 (25%), Positives = 302/725 (41%)
Query: 2 RTRQDSKTQKDQASGKESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSRS 61
R ++ KT+ ++ + E +V D + + + S+ + ++ +
Sbjct: 11 RRKRGQKTEDNKVARHEESVADDFEDEKQKPRRKSSFPKVSQGKRKRGCSDPGDPTNGAA 70
Query: 62 KKQDCAVGLTTSVLKVSGKQEVDKRVTWSDVDAHGCSRDAMGNTLRELDEGRLQDNVLDG 121
KK+ + LKV ++ + + D A C + + +D+G +D+ D
Sbjct: 71 KKKVAKATAKSKNLKVLKEEALSDGDDFRDSPAD-CKKAKKHPKSKVVDQGTDEDDSEDD 129
Query: 122 GEEMYDSDWEDGSIPVACSKENHP-ESDIKGVTIEFDAADSVTKKP------------VR 168
EE+ + + + + + P + +K V IE + ++ +R
Sbjct: 130 WEEV--EELTEPVLDMGENSATSPSDMPVKAVEIEIETPQQAKERERSEKIKMEFETYLR 187
Query: 169 RASAE-DKELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLT 227
R +KE+ E +HKVHLLCLLA G +S+C P + A K+ +
Sbjct: 188 RMMKRFNKEVQENMHKVHLLCLLASGFYRNSICRQPDLLAIGLSIIPIRFTKVP-LQDRD 246
Query: 228 ANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRA 282
A LS +V WF F V + +S S DL LE R EE+ + + + RA
Sbjct: 247 AYYLSNLVKWFIGTFTVNADLSA--SEQDDLQTTLERRIAIYSARDNEELVHIFLLILRA 304
Query: 283 LKLTTRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFS 342
L+L TR V L LK K S++++S G G + L PE P S
Sbjct: 305 LQLLTRLVLSLQPIPLKSAVTKGRKSSKETSVEGPG--GSSELSSNSPESH-NKPTTSRR 361
Query: 343 CDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVS-CELSSGNLDPSSSMACSDISEAC 401
++E + E K + K + + + Q +K S E + + ++
Sbjct: 362 IKEEETLSEGRGKATARGKRGTGTAGSRQRRKPSCSEGEEAEQKVQGRPHARKRRVAAKV 421
Query: 402 HPKEKSQALKRKGDLEFEMQLEMALSATNV----ATSKSNICSDVKDLNSNSSTVLPVKR 457
KE+S++ +FE +++ K S + + S + +R
Sbjct: 422 SYKEESESDGAGSGSDFEPSSGEGQHSSDEDCEPGPRKQKRASAPQRTKAGSKSASKTQR 481
Query: 458 LKKIESG---ESSTSCLG------ISTA---VGSRKVGAPLYWAEVYCSGENLTGKWVHV 505
+ E E+S+S G +S+ + RK W EVYC + KWV V
Sbjct: 482 GSQCEPSSFPEASSSSSGCKRGKKVSSGAEEMADRKPAGVDQWLEVYCEPQ---AKWVCV 538
Query: 506 DAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAW 563
D + ++ Q V A K + Y+V G +DVT+RY W K RV++ W
Sbjct: 539 DCVHGVVG--QPVACYKYATKP-MTYVVGIDSDGWVRDVTQRYDPAWMTATRKCRVDAEW 595
Query: 564 WDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNH 623
W L P R L + +R ED E + + L +PLPT+ YKNH
Sbjct: 596 WAETLRPYRSL------------------LTEREKKEDQEFQAKHLDQPLPTSISTYKNH 637
Query: 624 QLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPV 682
LY ++R L K+Q +YP+ +LG+C G AVY R CV TL +++ WL++A V+ EVP
Sbjct: 638 PLYALKRHLLKFQAIYPETAAVLGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPY 697
Query: 683 KVCSG 687
K+ G
Sbjct: 698 KMVKG 702
>RGD|1305760 [details] [associations]
symbol:Xpc "xeroderma pigmentosum, complementation group C"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO] [GO:0000715 "nucleotide-excision repair,
DNA damage recognition" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IEA;ISO] [GO:0003697 "single-stranded DNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0010224 "response to UV-B" evidence=IEA;ISO]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA;ISO]
[GO:0042493 "response to drug" evidence=IEP] [GO:0071942 "XPC
complex" evidence=IEA;ISO] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 RGD:1305760 GO:GO:0005634 GO:GO:0005737
GO:GO:0042493 GO:GO:0003684 GO:GO:0003697 GO:GO:0010224
EMBL:CH473957 GO:GO:0031573 GO:GO:0071942 GO:GO:0000715 KO:K10838
PANTHER:PTHR12135 GeneTree:ENSGT00390000005194 InterPro:IPR018026
TIGRFAMs:TIGR00605 CTD:7508 OMA:MKRFNKE OrthoDB:EOG40CHGQ
IPI:IPI00365175 RefSeq:NP_001101344.1 UniGene:Rn.22820
Ensembl:ENSRNOT00000011490 GeneID:312560 KEGG:rno:312560
UCSC:RGD:1305760 NextBio:664995 Uniprot:D4A3D8
Length = 933
Score = 401 (146.2 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 170/628 (27%), Positives = 269/628 (42%)
Query: 92 VDAHGCSRDAMGNTLRELDEGRLQDNVLDGGEEMYDS--DWEDGSIPVACSKENHPESDI 149
VD G D + E++E L + VLD GE S D ++ + ++
Sbjct: 118 VD-QGTDEDDSEDDWEEVEE--LTEPVLDMGENSATSRSDLPVKAVEIEIETPEQAKARE 174
Query: 150 KGVTIEFDAADSVTKKPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXX 209
+ I+ + ++ ++ ++R + KE+ E +HKVHLLCLLA G +S+C P + A
Sbjct: 175 RSEKIKMEF-ETYLRRMMKRFN---KEVQENMHKVHLLCLLASGFYRNSICQQPDLLAIG 230
Query: 210 XXXXXXXXXKISEVSKLTANALSPIVSWFHDNFHVRS--SVSTRRSFHSDLAH--ALESR 265
K+ + LS +V WF F V + S S + S + L A+ S
Sbjct: 231 LSIIPIRFTKVP-LQDRDVYYLSNLVKWFIGTFTVNADLSASEQDSLQTTLERRIAIYSA 289
Query: 266 EGTPEEIAALSVALFRALKLTTRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTL 325
EE+ + + + RAL+L TR V L LK K S++++S G G + P+
Sbjct: 290 RDN-EELVHIFLLILRALQLLTRLVLSLQPIPLKSAVAKGKKSSKETSLEGPGDSSEPSS 348
Query: 326 MVAKPEEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGN 385
+ PE P S ++E + E S K + K + + + Q +K P SC S G
Sbjct: 349 NI--PESH-NKPKTSKRIKQEETLSEGSGKANARGKRGTATAGSRQQRK-P-SC--SEGE 401
Query: 386 LDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATN--VATSKSNICSDVK 443
A +I HP+ + + + K + E + + A S ++ +++ + SD +
Sbjct: 402 ------EAKQEIQS--HPQAQKRRVAAKVSYKEESESDGAGSGSDFELSSGEGQHSSD-E 452
Query: 444 DLNSNSSTVLPVKRLKKIESGESSTSCL--GI-----STAVGSRKVGAPLYWAEVYCSGE 496
D ++ ++G S S G S +V S A ++ C GE
Sbjct: 453 DCKPGPRKQKRASAPQRSKAGSKSASKTQSGSQWEPPSFSVASSSSSACKRGKKISCGGE 512
Query: 497 NLTGK-------WVHV----DAANAIIDGEQKVEAAAAAC----KTSLRYIVAFAGCG-A 540
+ W+ V A +D V AC + Y+V G
Sbjct: 513 ETDDRKAAGVDQWLEVFCEPQAKWVCVDCVHGVVGQPVACYKYATKPMTYVVGIDSDGWV 572
Query: 541 KDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLE 600
+DVT+RY W K A W A LR S T +R E
Sbjct: 573 RDVTQRYDPAWMTATRKCRVDAEWWA--ETLRPYRSPLT---------------EREKKE 615
Query: 601 DMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGP-ILGFCSGHAVYPRSCV 659
D E + + L +PLPT+ YKNH LY ++R L K+Q +YP+ +LG+C G AVY R CV
Sbjct: 616 DQEFQAKHLDQPLPTSISTYKNHPLYALKRHLLKFQAIYPESAAVLGYCRGEAVYSRDCV 675
Query: 660 QTLKTKERWLREALQVKANEVPVKVCSG 687
TL +++ WL++A V+ EVP K+ G
Sbjct: 676 HTLHSRDTWLKQARVVRLGEVPYKMVKG 703
>UNIPROTKB|Q01831 [details] [associations]
symbol:XPC "DNA repair protein complementing XP-C cells"
species:9606 "Homo sapiens" [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0000405
"bubble DNA binding" evidence=TAS] [GO:0003684 "damaged DNA
binding" evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA
damage recognition" evidence=IDA;TAS] [GO:0000404 "loop DNA
binding" evidence=TAS] [GO:0071942 "XPC complex" evidence=IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IDA;TAS]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_216 InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005737 GO:GO:0005654 GO:GO:0042493 GO:GO:0003684
GO:GO:0003697 GO:GO:0010224 GO:GO:0000075 GO:GO:0000405
GO:GO:0031573 GO:GO:0000718 GO:GO:0071942 PDB:2A4J PDB:2GGM
PDB:2OBH PDBsum:2A4J PDBsum:2GGM PDBsum:2OBH GO:GO:0000715
GO:GO:0000404 KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135
InterPro:IPR018026 TIGRFAMs:TIGR00605 EMBL:D21089 EMBL:AF261901
EMBL:AF261892 EMBL:AF261893 EMBL:AF261894 EMBL:AF261895
EMBL:AF261896 EMBL:AF261897 EMBL:AF261898 EMBL:AF261899
EMBL:AF261900 EMBL:AY131066 EMBL:AC093495 EMBL:FJ695191
EMBL:FJ695192 EMBL:BC016620 EMBL:AK222844 EMBL:X65024
IPI:IPI00156793 PIR:S44345 RefSeq:NP_001139241.1 RefSeq:NP_004619.3
UniGene:Hs.475538 UniGene:Hs.739296 ProteinModelPortal:Q01831
SMR:Q01831 DIP:DIP-31225N IntAct:Q01831 MINT:MINT-105410
STRING:Q01831 PhosphoSite:Q01831 DMDM:296453081 PaxDb:Q01831
PeptideAtlas:Q01831 PRIDE:Q01831 Ensembl:ENST00000285021
GeneID:7508 KEGG:hsa:7508 UCSC:uc011ave.2 CTD:7508
GeneCards:GC03M014161 HGNC:HGNC:12816 HPA:CAB009932 MIM:278720
MIM:613208 neXtProt:NX_Q01831 Orphanet:276255 PharmGKB:PA37413
HOGENOM:HOG000124671 HOVERGEN:HBG000407 InParanoid:Q01831
OMA:MKRFNKE OrthoDB:EOG40CHGQ ChiTaRS:XPC EvolutionaryTrace:Q01831
GenomeRNAi:7508 NextBio:29391 ArrayExpress:Q01831 Bgee:Q01831
CleanEx:HS_XPC Genevestigator:Q01831 GermOnline:ENSG00000154767
Uniprot:Q01831
Length = 940
Score = 375 (137.1 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 193/742 (26%), Positives = 299/742 (40%)
Query: 5 QDSKTQKDQASGK---ESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSRS 61
++ ++QK +A K E A D + + L++ S+ + H + +
Sbjct: 14 RELRSQKSKAKSKARREEEEEDAFEDEKPP--KKSLLSKVSQGKRKRGCSHPGGSADGPA 71
Query: 62 KKQDCAVGLTTSVLKVSGKQEV----DKRVTWSDVD-AHGCSRDAMGNTLRELDEGRLQD 116
KK+ V + + LKV + + D R SD+ AH R A N +E +
Sbjct: 72 KKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNEDSNEEEEE-SE 130
Query: 117 NVLDGGEEMYDSDWEDGSIPVACSKENHPESDIKGVTIEFDAADSVTKKP---------- 166
N + EE+ + D A S+ P +K V IE + + +
Sbjct: 131 NDWEEVEELSEPVLGDVRESTAFSRSLLP---VKPVEIEIETPEQAKTRERSEKIKLEFE 187
Query: 167 --VRRASAE-DKELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEV 223
+RRA +K + E HKVHLLCLLA G +++C P + A ++
Sbjct: 188 TYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLP- 246
Query: 224 SKLTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVA 278
+ LS +V WF F V + +S S +L LE R EE+ + +
Sbjct: 247 RDVDTYYLSNLVKWFIGTFTVNAELSA--SEQDNLQTTLERRFAIYSARDDEELVHIFLL 304
Query: 279 LFRALKLTTRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPV 338
+ RAL+L TR V L LK K +++ G + + V + P
Sbjct: 305 ILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENH---TKP- 360
Query: 339 KSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKS---PVSCELSSGNLDPSSSMACS 395
K+ K+E ET +KG+ C+ S+ N +K P S E G D
Sbjct: 361 KTSKGTKQE---ETFAKGT--CRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKAT-- 413
Query: 396 DISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSN----SST 451
H +E+ A R E E + A S ++ S S SD D +S
Sbjct: 414 --QRRPHGRERRVA-SRVSYKE-ESGSDEAGSGSDFELS-SGEASDPSDEDSEPGPPKQR 468
Query: 452 VLPVKRLKKIESGESSTSCLG----------ISTAVGSRKVGAPLYWAEVYCSGENLTG- 500
P + K S +S + G S++ S K G + ++ G
Sbjct: 469 KAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGI 528
Query: 501 ------------KWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRY 547
KWV VD + ++ Q + A K + Y+V G +DVT+RY
Sbjct: 529 DQWLEVFCEQEEKWVCVDCVHGVVG--QPLTCYKYATKP-MTYVVGIDSDGWVRDVTQRY 585
Query: 548 CMKWYRIASK-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELET 606
W + K RV++ WW L P + F+ DR ED+E +
Sbjct: 586 DPVWMTVTRKCRVDAEWWAETLRPYQS-----------------PFM-DREKKEDLEFQA 627
Query: 607 RALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTK 665
+ + +PLPT YKNH LY ++R L KY+ +YP+ ILG+C G AVY R CV TL ++
Sbjct: 628 KHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSR 687
Query: 666 ERWLREALQVKANEVPVKVCSG 687
+ WL++A V+ EVP K+ G
Sbjct: 688 DTWLKKARVVRLGEVPYKMVKG 709
>UNIPROTKB|E9PH69 [details] [associations]
symbol:XPC "DNA repair protein-complementing XP-C cells"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 KO:K10838
PANTHER:PTHR12135 InterPro:IPR018026 TIGRFAMs:TIGR00605
EMBL:AC093495 EMBL:FJ695191 EMBL:FJ695192 RefSeq:NP_001139241.1
UniGene:Hs.475538 UniGene:Hs.739296 GeneID:7508 KEGG:hsa:7508
CTD:7508 HGNC:HGNC:12816 ChiTaRS:XPC GenomeRNAi:7508 NextBio:29391
IPI:IPI00924991 ProteinModelPortal:E9PH69 SMR:E9PH69 PRIDE:E9PH69
Ensembl:ENST00000449060 UCSC:uc011avg.2 ArrayExpress:E9PH69
Bgee:E9PH69 Uniprot:E9PH69
Length = 903
Score = 369 (135.0 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 164/603 (27%), Positives = 251/603 (41%)
Query: 123 EEMYDSDWEDGSIPVACSKENHPESDIKGVTIEFDAADSVTKKPVRRASAEDKELAELVH 182
EE ++DWE+ +K IK +EF+ + ++ ++R + K + E H
Sbjct: 126 EEESENDWEE-------AKTRERSEKIK---LEFE---TYLRRAMKRFN---KGVHEDTH 169
Query: 183 KVHLLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLTANALSPIVSWFHDNF 242
KVHLLCLLA G +++C P + A ++ + LS +V WF F
Sbjct: 170 KVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLP-RDVDTYYLSNLVKWFIGTF 228
Query: 243 HVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRALKLTTRFVSILDVAS 297
V + +S S +L LE R EE+ + + + RAL+L TR V L
Sbjct: 229 TVNAELSA--SEQDNLQTTLERRFAIYSARDDEELVHIFLLILRALQLLTRLVLSLQPIP 286
Query: 298 LKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENVCETSSKGS 357
LK K +++ G + + V + P K+ K+E ET +KG+
Sbjct: 287 LKSATAKGKKPSKERLTADPGGSSETSSQVLENH---TKP-KTSKGTKQE---ETFAKGT 339
Query: 358 PECKYSSPKSNNTQSKKS---PVSCELSSGNLDPSSSMACSDISEACHPKEKSQALKRKG 414
C+ S+ N +K P S E G D H +E+ A R
Sbjct: 340 --CRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKAT----QRRPHGRERRVA-SRVS 392
Query: 415 DLEFEMQLEMALSATNVATSKSNICSDVKDLNSN----SSTVLPVKRLKKIESGESSTSC 470
E E + A S ++ S S SD D +S P + K S +S +
Sbjct: 393 YKE-ESGSDEAGSGSDFELS-SGEASDPSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTH 450
Query: 471 LG----------ISTAVGSRKVGAPLYWAEVYCSGENLTG-------------KWVHVDA 507
G S++ S K G + ++ G KWV VD
Sbjct: 451 RGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEEKWVCVDC 510
Query: 508 ANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAWWD 565
+ ++ Q + A K + Y+V G +DVT+RY W + K RV++ WW
Sbjct: 511 VHGVVG--QPLTCYKYATKP-MTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWWA 567
Query: 566 AVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQL 625
L P + F+ DR ED+E + + + +PLPT YKNH L
Sbjct: 568 ETLRPYQS-----------------PFM-DREKKEDLEFQAKHMDQPLPTAIGLYKNHPL 609
Query: 626 YVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKV 684
Y ++R L KY+ +YP+ ILG+C G AVY R CV TL +++ WL++A V+ EVP K+
Sbjct: 610 YALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKM 669
Query: 685 CSG 687
G
Sbjct: 670 VKG 672
>UNIPROTKB|E1BDJ1 [details] [associations]
symbol:XPC "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071942 "XPC complex" evidence=IEA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IEA] [GO:0010224 "response
to UV-B" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 KO:K10838 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
CTD:7508 OMA:MKRFNKE EMBL:DAAA02054616 IPI:IPI00702830
RefSeq:NP_001192837.1 UniGene:Bt.45276 Ensembl:ENSBTAT00000009683
GeneID:524274 KEGG:bta:524274 NextBio:20873931 Uniprot:E1BDJ1
Length = 932
Score = 250 (93.1 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 60/159 (37%), Positives = 81/159 (50%)
Query: 531 YIVAFAGCGA-KDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAK 589
Y+V G G +DVT+RY W K A W A LR S
Sbjct: 564 YVVGIDGAGCVRDVTQRYDPAWLTATRKSRVDAAWWA--ETLRPYRSP------------ 609
Query: 590 DSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFC 648
+ DR ED E + + L +PLPT YKNH LY ++R L KY+ +YP+ +LG+C
Sbjct: 610 ---LVDREQREDQEFQAKHLDQPLPTVIGTYKNHPLYALKRHLLKYEAIYPETAAVLGYC 666
Query: 649 SGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVCSG 687
G AVY R CV TL +++ WL++A V+ EVP K+ G
Sbjct: 667 RGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKMVKG 705
Score = 171 (65.3 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 58/185 (31%), Positives = 85/185 (45%)
Query: 152 VTIEFDAADSVTKKPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXX 211
+ +EF+ + ++ ++R S KE+ E HKVHLLCLLA G +S+C+ P +QA
Sbjct: 179 IKMEFE---TYLRRMMKRFS---KEVHEDTHKVHLLCLLANGFYRNSICNQPDLQAIGLS 232
Query: 212 XXXXXXXKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT--- 268
K+ + + LS +V WF F V + +ST L LE R
Sbjct: 233 IIPTRFTKVPP-RDVDVSYLSNLVKWFIGTFTVNAELSTNEQ--DGLQTTLERRFAIYSA 289
Query: 269 --PEEIAALSVALFRALKLTTRFVSILDVASLKPEADKNVSSNQD-SSRVGGGIFNAPTL 325
EE+ + + L RAL L TR V L LK A+K ++ S+ GG A +
Sbjct: 290 RDDEELVHIFLLLLRALHLPTRLVLSLQPVPLKLSAEKGKKPCKERSTEAPGGSSEAASH 349
Query: 326 MVAKP 330
KP
Sbjct: 350 APGKP 354
Score = 120 (47.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGA-KDVTRR 546
W EV+ E KWV VD + ++ Q + A K + Y+V G G +DVT+R
Sbjct: 527 WLEVFLEREE---KWVCVDCVHGVVG--QPLTCYQYATKP-VTYVVGIDGAGCVRDVTQR 580
Query: 547 YCMKWYRIASK-RVNSAWWDAVLAPLR 572
Y W K RV++AWW L P R
Sbjct: 581 YDPAWLTATRKSRVDAAWWAETLRPYR 607
Score = 54 (24.1 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 26/91 (28%), Positives = 37/91 (40%)
Query: 2 RTRQDSKTQKDQASGKESTVRGALRDSE-SSHNETGTLAETSREGVGKFLR-----HVNA 55
R R +K + SG ++ G+ D E SS + E S G+ + R A
Sbjct: 415 RRRVAAKVSYKEESGSDAASSGS--DFEPSSEDSCRPSDEDSEPGLPRPRRAPAPQRTKA 472
Query: 56 RSSSRSKKQDCAVGLTTSVLKVSGKQEVDKR 86
S SRSK Q + GL ++ S KR
Sbjct: 473 GSKSRSKSQQGSRGLRPGFVEASASAAGSKR 503
Score = 44 (20.5 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 403 PKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLK-KI 461
P E+ +A KG E + + + V + DV + + S++ LPVK ++ +I
Sbjct: 106 PPER-EAAADKGSCEGDDEEDSEEDWEEVEEVSEPVPGDVGESGAFSASALPVKPVEIEI 164
Query: 462 ESGE 465
E+ E
Sbjct: 165 ETPE 168
>UNIPROTKB|F1N806 [details] [associations]
symbol:Gga.54220 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010224
"response to UV-B" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0071942 "XPC complex" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
EMBL:AADN02014130 IPI:IPI00818722 Ensembl:ENSGALT00000036242
ArrayExpress:F1N806 Uniprot:F1N806
Length = 826
Score = 362 (132.5 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 150/539 (27%), Positives = 226/539 (41%)
Query: 175 KELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLTANALSPI 234
KE+ E HKVHLLCLLA G + +C P + A K+ ++ +S +
Sbjct: 94 KEVREDTHKVHLLCLLANGFYRNRICSQPDLHAIGLSIIPIHFTKVP-AGQVDLLYISNL 152
Query: 235 VSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRALKLTTRF 289
V WF F V +ST + L LE R EE+ + + + RAL+L R
Sbjct: 153 VKWFVGTFTVNDELSTEKG--EPLQSTLERRFAIYAARDDEELVHIFLIILRALQLLCRL 210
Query: 290 VSILDVASLKPEADKNVSS--NQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKE 347
V L LK E VS Q + + ++ E S + K+
Sbjct: 211 VLSLQPIPLK-ETKAKVSCFLKQKLTTPCSEKSTSKKQSLSSTSEGQESSGTTPKAVAKK 269
Query: 348 NVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKS 407
C+ + + K S + +N +SKK+ S + + P +S S+ C+ +E
Sbjct: 270 CPCKKAKRDE---KSSGSEEDNEESKKTK-SAQTERTH-KPKNSRWRRVASKVCYKEESG 324
Query: 408 QALKRKGDLEFEMQLEMALSATNVAT-SKSNICSDVKDLNSNSSTVLPVKRLKKIESGES 466
D E + E +S + T SK S + S V+ VK K E+ ES
Sbjct: 325 SDEGSVSDFEISGE-ESDISDEDFETVSKKRRSSQ----GAQKSKVMTVKSPKS-ETSES 378
Query: 467 --STSCLGISTAVGSRKVGAPLYWAEVYCSGENL------TGKWVHVDAAN----AIIDG 514
S + LG+ +++ + ++ G+ + T +W+ V +D
Sbjct: 379 RLSRNSLGVEPRPHAQRKRNKIISSDED-DGQQMVRKVVGTDQWLEVFLEREDRWVCVDC 437
Query: 515 EQKVEAAAAACKT----SLRYIVAFAGCGA-KDVTRRYCMKWYRIASKRVNSAWWDAVLA 569
+ C T L YIV F G+ KDVT+RY W + K+ W
Sbjct: 438 VHGIVGQPQQCFTYATKPLSYIVGFDNDGSVKDVTQRYDPVWMTMTRKKRVDPEW----- 492
Query: 570 PLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIE 629
E + K FV DR+ E+ E + + +PLPT YKNH LY ++
Sbjct: 493 ----WE-------DTLQPYKSPFV-DRDKKEETEFQVKLQDQPLPTAIGEYKNHPLYALK 540
Query: 630 RWLNKYQILYPKGP-ILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVCSG 687
R L KYQ +YP+ ILG+C G AVY R CV TL +K+ WL++A V+ EVP K+ G
Sbjct: 541 RHLLKYQAIYPESAAILGYCRGEAVYSRDCVHTLHSKDTWLKQARVVRIGEVPYKMVKG 599
Score = 43 (20.2 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 107 RELDEGRLQDNVLDGGEEMYDSDWED 132
+E+DE DN D ++ + +WED
Sbjct: 9 KEMDE----DNTDDDDDDESEDEWED 30
>UNIPROTKB|F1SPI2 [details] [associations]
symbol:XPC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071942 "XPC complex" evidence=IEA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IEA] [GO:0010224 "response
to UV-B" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 KO:K10838 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
CTD:7508 OMA:MKRFNKE EMBL:CU633560 RefSeq:XP_003132441.1
Ensembl:ENSSSCT00000012699 GeneID:100514251 KEGG:ssc:100514251
ArrayExpress:F1SPI2 Uniprot:F1SPI2
Length = 944
Score = 236 (88.1 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 58/161 (36%), Positives = 81/161 (50%)
Query: 529 LRYIVAFAGCG-AKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESS 587
+ Y+V G G +DVT+RY W K A W A LR S
Sbjct: 572 MTYVVGIDGDGWVRDVTQRYDPAWMTATRKCRVDAVWWA--ETLRPYRSP---------- 619
Query: 588 AKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILG 646
+ +R ED E + + L +P+PT YKNH LY ++R L KY+ +YP+ ILG
Sbjct: 620 -----LLEREQREDQEFQAKHLDQPMPTVIGTYKNHPLYALKRHLLKYEAIYPETAAILG 674
Query: 647 FCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVCSG 687
+C G AVY R CV TL +++ WL++ V+ EVP K+ G
Sbjct: 675 YCRGEAVYSRDCVHTLHSRDTWLKQGRVVRLGEVPYKMVKG 715
Score = 179 (68.1 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 81/304 (26%), Positives = 123/304 (40%)
Query: 174 DKELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLTANALSP 233
+KE+ E HKVHLLCLLA G +S+C P ++A K+ + LS
Sbjct: 200 NKEVHEDTHKVHLLCLLANGFYRNSICSQPDLRAIGLSIIPTRFTKVPP-QDVDVCYLSN 258
Query: 234 IVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRALKLTTR 288
+V WF F V + +ST L LE R EE+ + + + RAL L+ R
Sbjct: 259 LVKWFIGTFTVNADLSTNEQ--DGLQTTLERRFAIYSARDDEELVHIFLLIIRALHLSAR 316
Query: 289 FVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKEN 348
V L LK A K ++++ S G G ++ T + P + +KS S +++E+
Sbjct: 317 LVLSLQPIPLKSSAAKGKKASKERSTEGPGC-SSET---SSPGPAKQTKLKSSSGNRRED 372
Query: 349 VCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKE--K 406
+ G P K K+ K+ S SSG A EA P +
Sbjct: 373 PSSEGTSG-PRAKGKGSKAAAATKKQREPS---SSGE---EEGKAAGQQGEARRPARGRR 425
Query: 407 SQALKRKGDLEFEMQLEMALSATNVATSKSNI-CSDVKDLNSNSSTVLPVKRLKKIESGE 465
QA R E E + A S+++ S + C +D L + ++G
Sbjct: 426 RQAATRVSYKE-ESGSDKASSSSDFELSSGDSHCPSDEDSEPGLRRQRRAPGLPRTKAGA 484
Query: 466 SSTS 469
S S
Sbjct: 485 KSDS 488
Score = 138 (53.6 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 68/247 (27%), Positives = 104/247 (42%)
Query: 339 KSFSCDKKENVCETSSKGSPECKYSS-------PKSNNTQSKKSPVSCELSSGNLDPSSS 391
K+ + KK+ E SS G E K + P + + VS + SG+ D +SS
Sbjct: 389 KAAAATKKQR--EPSSSGEEEGKAAGQQGEARRPARGRRRQAATRVSYKEESGS-DKASS 445
Query: 392 MACSDISEA---CHPKEKSQ-ALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNS 447
+ ++S C E S+ L+R+ L + + S+S S K
Sbjct: 446 SSDFELSSGDSHCPSDEDSEPGLRRQRRAP---GLPRTKAGAK-SDSRSQRGSHPKPPGF 501
Query: 448 NSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDA 507
+++ P +K G TS G A G + G +W EV+C E+ KWV VD
Sbjct: 502 LAASAGPPGSKRK---GGKKTSVRG-EEADGGKVAGVD-HWLEVFCERED---KWVCVDC 553
Query: 508 ANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAWWD 565
+ ++ Q + A K + Y+V G G +DVT+RY W K RV++ WW
Sbjct: 554 VHGVVG--QPLTCYQYATKP-MTYVVGIDGDGWVRDVTQRYDPAWMTATRKCRVDAVWWA 610
Query: 566 AVLAPLR 572
L P R
Sbjct: 611 ETLRPYR 617
Score = 52 (23.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 17 KESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSRSKKQD 65
K S +G E S G +ETS G K +SSS ++++D
Sbjct: 327 KSSAAKGKKASKERSTEGPGCSSETSSPGPAK---QTKLKSSSGNRRED 372
>UNIPROTKB|E1BUG1 [details] [associations]
symbol:Gga.54220 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010224
"response to UV-B" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0071942 "XPC complex" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
OMA:MKRFNKE EMBL:AADN02014130 IPI:IPI00603077
Ensembl:ENSGALT00000010275 ArrayExpress:E1BUG1 Uniprot:E1BUG1
Length = 936
Score = 362 (132.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 150/539 (27%), Positives = 226/539 (41%)
Query: 175 KELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLTANALSPI 234
KE+ E HKVHLLCLLA G + +C P + A K+ ++ +S +
Sbjct: 204 KEVREDTHKVHLLCLLANGFYRNRICSQPDLHAIGLSIIPIHFTKVP-AGQVDLLYISNL 262
Query: 235 VSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRALKLTTRF 289
V WF F V +ST + L LE R EE+ + + + RAL+L R
Sbjct: 263 VKWFVGTFTVNDELSTEKG--EPLQSTLERRFAIYAARDDEELVHIFLIILRALQLLCRL 320
Query: 290 VSILDVASLKPEADKNVSS--NQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKE 347
V L LK E VS Q + + ++ E S + K+
Sbjct: 321 VLSLQPIPLK-ETKAKVSCFLKQKLTTPCSEKSTSKKQSLSSTSEGQESSGTTPKAVAKK 379
Query: 348 NVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKS 407
C+ + + K S + +N +SKK+ S + + P +S S+ C+ +E
Sbjct: 380 CPCKKAKRDE---KSSGSEEDNEESKKTK-SAQTERTH-KPKNSRWRRVASKVCYKEESG 434
Query: 408 QALKRKGDLEFEMQLEMALSATNVAT-SKSNICSDVKDLNSNSSTVLPVKRLKKIESGES 466
D E + E +S + T SK S + S V+ VK K E+ ES
Sbjct: 435 SDEGSVSDFEISGE-ESDISDEDFETVSKKRRSSQ----GAQKSKVMTVKSPKS-ETSES 488
Query: 467 --STSCLGISTAVGSRKVGAPLYWAEVYCSGENL------TGKWVHVDAAN----AIIDG 514
S + LG+ +++ + ++ G+ + T +W+ V +D
Sbjct: 489 RLSRNSLGVEPRPHAQRKRNKIISSDED-DGQQMVRKVVGTDQWLEVFLEREDRWVCVDC 547
Query: 515 EQKVEAAAAACKT----SLRYIVAFAGCGA-KDVTRRYCMKWYRIASKRVNSAWWDAVLA 569
+ C T L YIV F G+ KDVT+RY W + K+ W
Sbjct: 548 VHGIVGQPQQCFTYATKPLSYIVGFDNDGSVKDVTQRYDPVWMTMTRKKRVDPEW----- 602
Query: 570 PLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIE 629
E + K FV DR+ E+ E + + +PLPT YKNH LY ++
Sbjct: 603 ----WE-------DTLQPYKSPFV-DRDKKEETEFQVKLQDQPLPTAIGEYKNHPLYALK 650
Query: 630 RWLNKYQILYPKGP-ILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVCSG 687
R L KYQ +YP+ ILG+C G AVY R CV TL +K+ WL++A V+ EVP K+ G
Sbjct: 651 RHLLKYQAIYPESAAILGYCRGEAVYSRDCVHTLHSKDTWLKQARVVRIGEVPYKMVKG 709
Score = 43 (20.2 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 107 RELDEGRLQDNVLDGGEEMYDSDWED 132
+E+DE DN D ++ + +WED
Sbjct: 119 KEMDE----DNTDDDDDDESEDEWED 140
>UNIPROTKB|E2RCR3 [details] [associations]
symbol:XPC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
OMA:MKRFNKE EMBL:AAEX03012049 Ensembl:ENSCAFT00000007204
Uniprot:E2RCR3
Length = 949
Score = 247 (92.0 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 65/182 (35%), Positives = 90/182 (49%)
Query: 512 IDGEQKVEAAAAAC----KTSLRYIVAFAGCGA-KDVTRRYCMKWYRIASKRVNSAWWDA 566
+D V A AC + Y+V G G+ +DVT+RY W K A W A
Sbjct: 555 VDCVHGVVGQALACYKYATKPMTYVVGIDGDGSVRDVTQRYDPAWMTATRKCRVDAKWWA 614
Query: 567 VLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLY 626
LR +S + +R ED E + + L +PLPT YKNH LY
Sbjct: 615 --ETLRPYQS---------------LLVEREKKEDSEFQAKHLGQPLPTVIGTYKNHPLY 657
Query: 627 VIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVC 685
++R L KY+ +YP+ ILG+C G AVY R CV TL +++ WL++A V+ EVP K+
Sbjct: 658 ALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKMV 717
Query: 686 SG 687
G
Sbjct: 718 KG 719
Score = 151 (58.2 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 59/211 (27%), Positives = 95/211 (45%)
Query: 152 VTIEFDAADSVTKKPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCDDPLIQAXXXX 211
+ +EF+ + ++ ++R S KE+ E HKVHLLCLLA G ++C+ P + A
Sbjct: 188 IKVEFE---TYLRRMMKRFS---KEVREDTHKVHLLCLLANGFYRSNICNQPDLLAIGLS 241
Query: 212 XXXXXXXKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT--- 268
++ + + LS +V WF F V + +ST L LE R
Sbjct: 242 IVPTRFTRVPP-QDVDSGYLSNLVKWFVGTFTVNADLSTNEQ--DGLQTTLERRFAIYSA 298
Query: 269 --PEEIAALSVALFRALKLTTRFVSILDVASLK-PEADKNVSSNQDSSRVGGGIFNAPTL 325
EE+ + + + RAL+L TR V L LK P A ++ + S+ G +L
Sbjct: 299 RDDEELVHIFLLILRALQLPTRLVLSLQPLPLKLPTAKGKKATTEKSAEDPGS-----SL 353
Query: 326 MVAKPEEVLASPVKSFSCDKKENVCETSSKG 356
+ P + K+ ++E +TSSKG
Sbjct: 354 ETSSPVAEGQTKPKTSKGTRQE---DTSSKG 381
Score = 128 (50.1 bits), Expect = 0.00023, P = 0.00023
Identities = 82/302 (27%), Positives = 120/302 (39%)
Query: 296 ASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENVC----- 350
A+ + A+ SS + SS V G T + E+ + + S S K+
Sbjct: 340 ATTEKSAEDPGSSLETSSPVAEGQTKPKTSKGTRQEDTSSKGLGSTSAKGKKGKAAAVGK 399
Query: 351 ---ETSSKGSPECKYSSPKSNNTQSKK--------SPVSCELSSGNLDPSSSMACSDIS- 398
E SS G E K + + TQ ++ S VS + S + D SS + ++S
Sbjct: 400 RRREPSSSGEEERK-AGGQEEETQRRRYGRERQVASRVSYKEESAS-DKGSSGSDFELSS 457
Query: 399 -EACHPK-EKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVK-DLNSNSSTVLPV 455
EA H E S+ + + Q A S T+ T S SS+
Sbjct: 458 GEAHHSSDEDSEPVLPRQRRAPGPQRTKAGSRTDSRTQSGRPSKHPGFPAASTSSSSSKS 517
Query: 456 KRLKKIES-GESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDG 514
K+ KKI S GE + RK W EV+C E KWV VD + ++
Sbjct: 518 KQGKKISSDGEGAER----------RKAAGVDQWLEVFCEQEE---KWVCVDCVHGVVG- 563
Query: 515 EQKVEAAAAACKTSLRYIVAFAGCGA-KDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLR 572
Q + A K + Y+V G G+ +DVT+RY W K RV++ WW L P +
Sbjct: 564 -QALACYKYATKP-MTYVVGIDGDGSVRDVTQRYDPAWMTATRKCRVDAKWWAETLRPYQ 621
Query: 573 EL 574
L
Sbjct: 622 SL 623
Score = 52 (23.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 395 SDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLP 454
+ + + HP ++ A+ KG E + + E V + DV + + S +VLP
Sbjct: 107 ASVRKKAHPSQREAAVD-KGSCEEDDEEESEDEWEEVEELGEPVPGDVGENAAFSKSVLP 165
Query: 455 VKRLK-KIESGESS 467
VK ++ +IE+ + +
Sbjct: 166 VKPVEIEIETPQQA 179
Score = 45 (20.9 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 3 TRQDSKTQKDQASGKESTVRGALRDSESSHNETGTLAETSREG 45
+R DS+TQ + S K A S SS ++ G + EG
Sbjct: 488 SRTDSRTQSGRPS-KHPGFPAASTSSSSSKSKQGKKISSDGEG 529
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 14 ASGKESTVRGALRDSESSHNETGTLAE-TSREGVGKFLRHVNARS------SSRSKK-QD 65
A GK++T + D SS + +AE ++ K R + S S++ KK +
Sbjct: 335 AKGKKATTEKSAEDPGSSLETSSPVAEGQTKPKTSKGTRQEDTSSKGLGSTSAKGKKGKA 394
Query: 66 CAVGLTTSVLKVSGKQE 82
AVG SG++E
Sbjct: 395 AAVGKRRREPSSSGEEE 411
Score = 41 (19.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 21/73 (28%), Positives = 28/73 (38%)
Query: 17 KESTVRGALRDSESSHNETGTLAETSR---EGVGKFLRHVNARSSSRSKKQDCAVGLTTS 73
K T +G +E S + G+ ETS EG K R S K +G T++
Sbjct: 331 KLPTAKGKKATTEKSAEDPGSSLETSSPVAEGQTKPKTSKGTRQEDTSSK---GLGSTSA 387
Query: 74 VLKVSGKQEVDKR 86
K V KR
Sbjct: 388 KGKKGKAAAVGKR 400
>ZFIN|ZDB-GENE-030131-8461 [details] [associations]
symbol:xpc "xeroderma pigmentosum, complementation
group C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 ZFIN:ZDB-GENE-030131-8461 GO:GO:0005634
GO:GO:0003684 GO:GO:0006289 KO:K10838 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 CTD:7508 HOVERGEN:HBG000407
OMA:MKRFNKE EMBL:BX784025 IPI:IPI00610110 RefSeq:NP_001038675.1
UniGene:Dr.76635 Ensembl:ENSDART00000058100 GeneID:541386
KEGG:dre:541386 InParanoid:Q1LVE4 NextBio:20879198 Uniprot:Q1LVE4
Length = 879
Score = 233 (87.1 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
Identities = 43/94 (45%), Positives = 60/94 (63%)
Query: 595 DRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAV 653
+R ED E++ + L +PLPT+ YKNH LYV++R L KY+ LYP +LG+C G V
Sbjct: 552 ERGQKEDQEMQAKLLDKPLPTSVSEYKNHPLYVLKRHLLKYEALYPATAAVLGYCRGEPV 611
Query: 654 YPRSCVQTLKTKERWLREALQVKANEVPVKVCSG 687
Y R CV TL +++ WL+EA V+ E P K+ G
Sbjct: 612 YSRDCVHTLHSRDTWLKEARTVRLGEEPYKMVLG 645
Score = 155 (59.6 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
Identities = 94/385 (24%), Positives = 167/385 (43%)
Query: 26 RDSESSHNETGTLAETSREGVGKFLRHV-NAR-SSSRSKKQDCAVGLTTSVLKVSGKQEV 83
+ + ++ ++G+ + ++E + +++ N++ +S RS+K + TS K EV
Sbjct: 15 KPKQIANTKSGSKTQKAKENGMETKKNLKNSKVASRRSRKVKDVLDEVTS--KYFQDSEV 72
Query: 84 DKRVTWSDVDAHGCSRDAMGNTLRELDEGRLQDNVLDGGEEMYDSDWED-----GSIPVA 138
K D+ H R + +T L + ++++ D +E DWE+ G +
Sbjct: 73 -KTEEPEDLSDHSEERMIIEDT--SLSK-QVKEEEEDSEDE---DDWEEVEEMAGPLGPV 125
Query: 139 CSKENHPESDIKGVTIEFDAADSVTK---KPVRRASAE----------DKELAELVHKVH 185
S E ES K V IE + D + K K R+A E +K+L HKVH
Sbjct: 126 DSSELALES--KPVEIEIETPDMIRKRQKKEKRKAEFETYLRRMMNRFNKDLLVDTHKVH 183
Query: 186 LLCLLARGRLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLTANALSPIVSWFHDNFHVR 245
LLCL+A G + + +P + A +S + ++ L ++ WF F +
Sbjct: 184 LLCLMASGLFRNRLLCEPDLLAVALSLLPSHFTTVS-LKRINNGFLEGLLKWFQATFTLN 242
Query: 246 SSVSTRRSFHSDLAHALESREG-----TPEEIAALSVALFRALKLTTRFVSILDVASLKP 300
++ + DL LE R G EE+ L + + R+L+L R V L LKP
Sbjct: 243 PALPEEKEV--DLRTVLEKRMGCLSARNHEEMTYLFLLVLRSLRLFCRLVLSLQPLPLKP 300
Query: 301 E-ADKNVSS-NQDSSRVGGGIFNAPTLMVA----KPEEVLASPVKSFSCDKKENVCETSS 354
A K+ ++ ++ SS ++P L V+ +P A+ + +K+ +T
Sbjct: 301 PPATKSKTTPSKSSSEKAQSEKSSPELKVSPGSKRPSSATAAAKEDRGGKRKK---KTGG 357
Query: 355 KGSPECKYSS-PKSNNTQSKKSPVS 378
G E + PK++ +S S VS
Sbjct: 358 GGDKEAAGAQKPKNSRRRSVASKVS 382
Score = 103 (41.3 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 60/256 (23%), Positives = 96/256 (37%)
Query: 353 SSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKSQ---- 408
S K SPE K S P S S + + + + + A PK +
Sbjct: 320 SEKSSPELKVS-PGSKRPSSATAAAKEDRGGKRKKKTGGGGDKEAAGAQKPKNSRRRSVA 378
Query: 409 ---ALKRKGDLEFEMQLEMALSATNVATSKSN-----ICSDVKDLNSNSSTVLPVKRLKK 460
+ K G E E Q E +N S+ + IC K + SS V +R ++
Sbjct: 379 SKVSYKEVGSEEEEEQSEEEFQPSNEDDSEDSDGAVKICRKSKVKSRRSSKVKQEERSEE 438
Query: 461 IESGESSTSC-LGISTAVGSRKVGAPL-YWAEVYCSGENLTGKWVHVDAANAIIDGEQKV 518
E E + +K G W EVY +G+WV VD + G+ ++
Sbjct: 439 EEEEEEEEEEEKEVKKQRRKKKQGKGADEWLEVYLES---SGRWVCVDVDQGV--GQPQL 493
Query: 519 EAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASKR-VNSAWWDAVLAPLR--EL 574
+ A + Y+V G KD+ RY W + +R V+S WW+ + + +
Sbjct: 494 CSDQATLP--ITYVVGLDDEGFMKDLGSRYDPTWLTSSRRRRVDSEWWEETMELYKSPDT 551
Query: 575 ESGATGDLNVESSAKD 590
E G D +++ D
Sbjct: 552 ERGQKEDQEMQAKLLD 567
Score = 59 (25.8 bits), Expect = 4.7e-17, Sum P(3) = 4.7e-17
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 352 TSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKS 407
T SK +P K SS K+ QS+KS ++S G+ PSS+ A + K+K+
Sbjct: 304 TKSKTTPS-KSSSEKA---QSEKSSPELKVSPGSKRPSSATAAAKEDRGGKRKKKT 355
Score = 46 (21.3 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 20/97 (20%), Positives = 43/97 (44%)
Query: 3 TRQDSKTQKDQASGKESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSRSK 62
T+ SKTQK + +G E+ + L++S+ + + + + E K+ + ++
Sbjct: 22 TKSGSKTQKAKENGMET--KKNLKNSKVASRRSRKVKDVLDEVTSKYFQDSEVKTEEPED 79
Query: 63 KQDCA----VGLTTSVLKVSGKQEVDKRVT--WSDVD 93
D + + TS+ K ++E D W +V+
Sbjct: 80 LSDHSEERMIIEDTSLSKQVKEEEEDSEDEDDWEEVE 116
Score = 37 (18.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 587 SAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKY 635
S + S V E+ E E E +Q K Q + WL Y
Sbjct: 424 SRRSSKVKQEERSEEEEEEEEEEEEEKEVKKQRRKKKQGKGADEWLEVY 472
>FB|FBgn0004698 [details] [associations]
symbol:mus210 "mutagen-sensitive 210" species:7227
"Drosophila melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;NAS] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
EMBL:AE013599 GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 KO:K10838
eggNOG:COG5535 PANTHER:PTHR12135 GeneTree:ENSGT00390000005194
InterPro:IPR018026 TIGRFAMs:TIGR00605 EMBL:Z28622 EMBL:AF209743
EMBL:AY070566 PIR:S42402 RefSeq:NP_476861.1 RefSeq:NP_725451.1
UniGene:Dm.637 ProteinModelPortal:Q24595 SMR:Q24595 IntAct:Q24595
STRING:Q24595 PaxDb:Q24595 PRIDE:Q24595 EnsemblMetazoa:FBtr0087374
GeneID:36697 KEGG:dme:Dmel_CG8153 CTD:36697 FlyBase:FBgn0004698
InParanoid:Q24595 OMA:KYLQSFV OrthoDB:EOG4547F1 GenomeRNAi:36697
NextBio:799920 Bgee:Q24595 GermOnline:CG8153 Uniprot:Q24595
Length = 1293
Score = 200 (75.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 60/158 (37%), Positives = 74/158 (46%)
Query: 529 LRYIVAFAGCGA-KDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESS 587
L Y+ AF + KDVT RYC W K W L E + G
Sbjct: 996 LAYVFAFQDDQSLKDVTARYCASWSTTVRKARVEKAW------LDETIAPYLG-----RR 1044
Query: 588 AKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILG 646
K R+ ED +L +PLP + +K+H LYV+ER L K+Q LYP P LG
Sbjct: 1045 TK------RDITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYPPDAPTLG 1098
Query: 647 FCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKV 684
F G AVY R CV L ++E WL+ A VK E P KV
Sbjct: 1099 FIRGEAVYSRDCVHLLHSREIWLKSARVVKLGEQPYKV 1136
Score = 105 (42.0 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 82/366 (22%), Positives = 141/366 (38%)
Query: 128 SDWEDGSIPVACSKENHPESDIKGV--TIEFDAADSVTKKPVRRASAEDKELAELVHKVH 185
SD +DG P S + ++G+ T E + RR + + K+ L+HKV
Sbjct: 329 SDQDDGETP-NISGDLEIRVGLEGLRPTKEQKTQHELEMALKRRLNRDIKDRQILLHKVS 387
Query: 186 LLCLLARG----RLIDSVCDDPLIQAXXXXXXXXXXXKISEVSKLTANALSPIVSWFHD- 240
L+C +AR RL+ D L+QA ++L L V+WF
Sbjct: 388 LMCQIARSLKYNRLLSE--SDSLMQATLKLLPSRNAYPTERGTEL--KYLQSFVTWFKTS 443
Query: 241 ------NFHVRSSVSTRRSFHSDLAHALESREGT-PEEIAALSVALFRALKLTTRFVSIL 293
N + S +T+ + L ++ +E +++ + +AL R + + R + L
Sbjct: 444 IKLLSPNLYSAQSPATKEAILEALLEQVKRKEARCKQDMIFIFIALARGMGMHCRLIVNL 503
Query: 294 DVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENV-CET 352
L+P A S+ ++ N + ++ E P K DKK E
Sbjct: 504 QPMPLRPAA-----SDLIPIKLRPDDKNKSQTVESERESEDEKPKK----DKKAGKPAEK 554
Query: 353 SSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACS---DISEACHPKEKSQA 409
S S K + K+N +++ P+S + G+ S ++S + EKS+
Sbjct: 555 ESSKSTISKEAEKKNNAKKAEAKPLSKSTTKGSETTKSGTVPKVKKELSLSSKLVEKSKH 614
Query: 410 LKR----KGDLEFEMQLEMALSATNVATSKSNICSDVKDLNS--NSSTVLPVKRLKKIES 463
K K D F+ + + S+ + S + K L +S VL K S
Sbjct: 615 QKAYTSSKSDTSFDEKPSTSSSSKCLKEEYSELGLSKKLLKPTLSSKLVLKSKNQSSFSS 674
Query: 464 GESSTS 469
+S TS
Sbjct: 675 NKSDTS 680
Score = 45 (20.9 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 18/85 (21%), Positives = 40/85 (47%)
Query: 2 RTRQDSKTQKDQASGK----ESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARS 57
R +D K +KD+ +GK ES+ +++E +N A+ + K + +
Sbjct: 535 RESEDEKPKKDKKAGKPAEKESSKSTISKEAEKKNNAKKAEAKPLSKSTTKGSETTKSGT 594
Query: 58 SSRSKKQDCAVGLTTSVLKVSGKQE 82
+ KK+ + L++ +++ S Q+
Sbjct: 595 VPKVKKE---LSLSSKLVEKSKHQK 616
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 340 SFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPS 389
S S KE + SS + K +SP T+ + S + +++ N+ S
Sbjct: 689 SSSKSLKEETAKLSSSKLEDKKVASPAETKTKVQSSLLK-RVTTQNISES 737
Score = 37 (18.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 345 KKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPK 404
K +N SS S +P ++++ + +LSS L+ + ++ K
Sbjct: 665 KSKNQSSFSSNKSDTSFEENPSTSSSSKSLKEETAKLSSSKLEDKKVASPAETKT----K 720
Query: 405 EKSQALKR 412
+S LKR
Sbjct: 721 VQSSLLKR 728
>ASPGD|ASPL0000010029 [details] [associations]
symbol:AN3890 species:162425 "Emericella nidulans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 EMBL:BN001302 GO:GO:0006289
EMBL:AACD01000062 KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135
OMA:FKGRHGT OrthoDB:EOG4Z0FG0 RefSeq:XP_661494.1
ProteinModelPortal:Q5B6E0 STRING:Q5B6E0
EnsemblFungi:CADANIAT00004811 GeneID:2873313 KEGG:ani:AN3890.2
HOGENOM:HOG000182868 Uniprot:Q5B6E0
Length = 951
Score = 214 (80.4 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 78/265 (29%), Positives = 118/265 (44%)
Query: 438 ICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGI--STAVGSRKVGA----PLYWAEV 491
I SD D ++ ST K G G+ +T + SR + P++W E
Sbjct: 314 ISSDDPDSLTDGSTKSEAKPAPIRRIGRPGFKPTGVQNTTVLSSRPTRSESSYPVFWVEA 373
Query: 492 YCSGENLTGKWVHVDA-ANAIIDGEQKVEAAAAACKTSLRYIVAFA-GCGAKDVTRRYCM 549
+ KWV +D + K+E A L Y+VAF A+DVTRRY
Sbjct: 374 F---NEAFQKWVVIDPMVTKTLAKPHKLEPPATDPYNLLSYVVAFEEDASARDVTRRYT- 429
Query: 550 KWYRIASKRVNSAWWDAVLAPLRELESGATGDL---NVESSAKDSFVADRNSLEDMELET 606
RV ++A LR +ES G+ V + F+ DR+ LE EL
Sbjct: 430 --------RV----FNAKTRKLR-VESTKNGEAWWKRVLEHFEKPFLEDRDELEIAELTA 476
Query: 607 RALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK---GPI-LGFCSGHA----VYPRSC 658
+ +EP+P N Q +K+H +Y +ER L + ++++PK G + LG G +Y RS
Sbjct: 477 KTASEPMPRNVQDFKDHPIYALERHLRRNEVIFPKRVTGHVSLGKSGGKGQTEPIYRRSD 536
Query: 659 VQTLKTKERWLREALQVKANEVPVK 683
V L++ +W R +K E P+K
Sbjct: 537 VHILRSANKWYRLGRDIKVGEQPLK 561
Score = 82 (33.9 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 44/188 (23%), Positives = 75/188 (39%)
Query: 22 RGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSRSKKQDCAVGLTTSVLKVSGKQ 81
RG R S E + E RE L A+ S+S+ + A + + Q
Sbjct: 13 RGTPRSRRSKQAED-EIPEVYRE----MLAEAEAQEISQSENERPAKRFKPAGYRARTAQ 67
Query: 82 EVDKRVTWSDVDAHGCSRDAMGNTLRELDEGRLQDNVLDGGEEMYDSDWEDGSIPV-ACS 140
+V D + DA+ + ++ N +E D +WE+ I S
Sbjct: 68 AFKAQVLQQDTNPMDAEEDAV-------KQPQIVYNSPSESDES-DMEWEEVDIQQPTIS 119
Query: 141 KENHPESDIKGVTIEFDAADSVTKKPVRR--ASAEDKELAELVHKVHLLCLLARGRLIDS 198
+D + I + + ++ VRR +A +K+L VHK+HLLCL+ + +
Sbjct: 120 GPTSSVTDEAPLQITLEQDHNRKRRVVRRKPVTAAEKKLRLDVHKMHLLCLMCHVQRRNL 179
Query: 199 VCDDPLIQ 206
C+D +Q
Sbjct: 180 WCNDEEVQ 187
>WB|WBGene00022296 [details] [associations]
symbol:xpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 EMBL:FO081666 KO:K10838
eggNOG:COG5535 PANTHER:PTHR12135 GeneTree:ENSGT00390000005194
RefSeq:NP_500156.2 ProteinModelPortal:Q9N4C3 IntAct:Q9N4C3
MINT:MINT-228757 STRING:Q9N4C3 PaxDb:Q9N4C3
EnsemblMetazoa:Y76B12C.2 GeneID:177002 KEGG:cel:CELE_Y76B12C.2
UCSC:Y76B12C.2 CTD:177002 WormBase:Y76B12C.2 InParanoid:Q9N4C3
OMA:YLRQEIN NextBio:894928 Uniprot:Q9N4C3
Length = 1119
Score = 175 (66.7 bits), Expect = 4.2e-14, Sum P(4) = 4.2e-14
Identities = 38/94 (40%), Positives = 52/94 (55%)
Query: 594 ADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPI---LGFCSG 650
++R E M++ + PLPT YKNH LY +E+ L K++ +YP LG G
Sbjct: 812 SERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALEKDLLKFEAIYPPPATQKPLGQIRG 871
Query: 651 HAVYPRSCVQTLKTKERWLREALQVKANEVPVKV 684
H VYPRS V TL+ + WL+ A VK E P K+
Sbjct: 872 HNVYPRSTVFTLQGENNWLKLARSVKIGEKPYKI 905
Score = 89 (36.4 bits), Expect = 4.2e-14, Sum P(4) = 4.2e-14
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 175 KELAELVHKVHLLCLLARGRLIDSVC-DDPLIQAXXXXXXXXXXXKISEVSKLTANALSP 233
+E+ E HKVHLLC +A + + + D+ L+ + K + + +
Sbjct: 517 REMWENTHKVHLLCFMAHLKFVVKIALDESLVPSLMMSQLPNGYLKFIGEPVVPIDIMKN 576
Query: 234 IVSWFHDNFHVRSSVSTRRSFHSD-LAHALESREGTPEEIAAL 275
+V WF D F + V + S D L E+R + AL
Sbjct: 577 LVKWFADAFRPLNGVVSVASIEQDSLLEGHEARYPETRRLTAL 619
Score = 61 (26.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 31/141 (21%), Positives = 60/141 (42%)
Query: 329 KPEEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDP 388
K E ++ S KS + K + E PE + N +S KS + S+ N
Sbjct: 150 KSENLVQSVPKSTTNGSKVAIIEDD----PEIR----AENGVKSSKSDEKPDFSAQN--- 198
Query: 389 SSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSN 448
S +A + + P+ K+ + + QLE++ S++ + +S + D ++
Sbjct: 199 GSKLAQNAPNRISRPRRSVTTAKKVSYVPSDDQLELSSSSSELESSSED--EDT-EIRPK 255
Query: 449 SSTVLPVKRLKKIESGESSTS 469
+ + + KR K + ES +S
Sbjct: 256 TGSKIAKKREKSFKISESESS 276
Score = 58 (25.5 bits), Expect = 4.2e-14, Sum P(4) = 4.2e-14
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 335 ASPVKS-FSCDKKENVCETSSKGSPECKYSSPKSNNTQSK 373
ASP+ F+ D K+ +CE S + + +C + T K
Sbjct: 758 ASPISYVFAIDNKQGICEVSQRYAMDCVKQDFRRRRTNPK 797
Score = 50 (22.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 295 VASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVK-SF--SCDKKE---N 348
V S K + + S+ Q+ S++ NAP +++P + + K S+ S D+ E +
Sbjct: 183 VKSSKSDEKPDFSA-QNGSKLAQ---NAPN-RISRPRRSVTTAKKVSYVPSDDQLELSSS 237
Query: 349 VCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKE 405
E S E PK+ + +KK S ++S SSS + D SEA E
Sbjct: 238 SSELESSSEDEDTEIRPKTGSKIAKKREKSFKISESE---SSSESPDDESEASEASE 291
Score = 37 (18.1 bits), Expect = 4.2e-14, Sum P(4) = 4.2e-14
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 8 KTQKDQASGKESTVRGALRDSESSHNE 34
K+QK+ +++ + DS SS +E
Sbjct: 440 KSQKNVKKSEKNDEKNTAGDSSSSEDE 466
>POMBASE|SPAC12B10.12c [details] [associations]
symbol:rhp41 "DNA repair protein Rhp41" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0006298 "mismatch repair" evidence=IGI]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
PomBase:SPAC12B10.12c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005819 GO:GO:0003684 GO:GO:0006298 GO:GO:0006289
GO:GO:0000109 KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135
OrthoDB:EOG4Z0FG0 PIR:T37579 RefSeq:NP_594644.1
ProteinModelPortal:Q10445 STRING:Q10445
EnsemblFungi:SPAC12B10.12c.1 GeneID:2542967 KEGG:spo:SPAC12B10.12c
OMA:NEASSHE NextBio:20804002 InterPro:IPR018026 TIGRFAMs:TIGR00605
Uniprot:Q10445
Length = 638
Score = 191 (72.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 74/246 (30%), Positives = 110/246 (44%)
Query: 456 KRLKKIESGESSTSCLGISTAVGSR---KV---GAPLYWAEVYCSGENLTGKWVHVDA-A 508
KR K I+ S+ S L S V KV P++W E + KWV VD
Sbjct: 267 KRRKIIQPSFSNLSHLDASDIVTEDTKLKVIDSPKPVFWVEAF---NKAMQKWVCVDPFG 323
Query: 509 NAIIDGE-QKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASKRVN-----S 561
+A + G+ ++ E A++ + Y+ A G KDVTR+YC+ +Y+I RV
Sbjct: 324 DASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVKDVTRKYCLHYYKILKNRVEIFPFGK 383
Query: 562 AWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYK 621
AW + + + + G D F D +++ED EL +E +P N Q K
Sbjct: 384 AWMNRIFSKI-----GKPRD----------FYNDMDAIEDAELLRLEQSEGIPRNIQDLK 428
Query: 622 NHQLYVIERWLNKYQILYPKGPILGFCS---G-HAVYPRSCVQTLKTKERWLREALQVKA 677
+H L+V+ER L K Q + G G + G VYPR V + E W R+ +K
Sbjct: 429 DHPLFVLERHLKKNQAI-KTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYRKGRIIKP 487
Query: 678 NEVPVK 683
P+K
Sbjct: 488 GAQPLK 493
Score = 63 (27.2 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 142 ENHPESDIKGVTIEFDAADSVTKKPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCD 201
+ P D V D +V K+ + ++ D+++ +H++HLLCL ++ CD
Sbjct: 49 QERPTHDFGDVEATVDR--TVEKRSRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCD 106
Query: 202 D 202
D
Sbjct: 107 D 107
>CGD|CAL0004788 [details] [associations]
symbol:orf19.6722 species:5476 "Candida albicans" [GO:0000111
"nucleotide-excision repair factor 2 complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
CGD:CAL0004788 GO:GO:0005634 GO:GO:0003684 GO:GO:0006289
EMBL:AACQ01000029 EMBL:AACQ01000028 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 RefSeq:XP_719704.1 RefSeq:XP_719821.1
ProteinModelPortal:Q5ADX0 STRING:Q5ADX0 GeneID:3638462
GeneID:3638600 KEGG:cal:CaO19.14014 KEGG:cal:CaO19.6722
Uniprot:Q5ADX0
Length = 709
Score = 179 (68.1 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 66/214 (30%), Positives = 97/214 (45%)
Query: 485 PLYWAEVYCSGENLTGKWVHVDA-ANAIID--GEQK---VEAAAAACKTSLRYIVAFAGC 538
P++W EV+ T +WV +D +I+ ++K E + L Y+VAF
Sbjct: 281 PVFWVEVW---NKYTRQWVSIDPIVMKLIEVCPKRKKSPFEPPPTDERNQLTYVVAFDKF 337
Query: 539 G-AKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRN 597
G +DVTRRY Y +K + + E +S L K VAD
Sbjct: 338 GRVRDVTRRYS---YNYNAKTIRKR----IEFRSSEDKSWYLKVLRCCDFKKTQNVAD-- 388
Query: 598 SLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPI--LG-FCSGHA-- 652
E E R L E +P N QA+KNH LY +E L + +I++PK G F S ++
Sbjct: 389 IYEQKEFYDRDLAEGMPNNIQAFKNHPLYALESQLRQDEIIFPKDDTSKCGTFRSKNSSK 448
Query: 653 ---VYPRSCVQTLKTKERWLREALQVKANEVPVK 683
VY RSCV L++ + W Q+K +P+K
Sbjct: 449 VFQVYKRSCVHRLRSAKAWYMRGRQLKVGAIPLK 482
Score = 68 (29.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 117 NVLDGGEEMYDSDWEDGSIPVACSKENHPESDIKGVTIEFDAADSVTKKPVRRASAEDKE 176
N+LD +E D E+ IP KE+ ++ + I D K P S E++
Sbjct: 54 NILDDSDEFETIDLEN--IP----KESGNDT----LVIRIDNNKKEEKTPKNLISREERH 103
Query: 177 LAELVHKVHLLCLLARGRLIDSVCDD 202
L+HK++L+ +L G + + C++
Sbjct: 104 RRVLLHKMYLVMMLVHGSIRNLWCNN 129
>DICTYBASE|DDB_G0292296 [details] [associations]
symbol:xpc "DNA repair protein Rad4 family protein"
species:44689 "Dictyostelium discoideum" [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01031 SMART:SM01032 dictyBase:DDB_G0292296
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003684
EMBL:AAFI02000189 GO:GO:0006289 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 RefSeq:XP_001134493.1 ProteinModelPortal:Q1ZXA6
EnsemblProtists:DDB0232368 GeneID:8628599 KEGG:ddi:DDB_G0292296
InParanoid:Q1ZXA6 OMA:VELFYMV Uniprot:Q1ZXA6
Length = 967
Score = 123 (48.4 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 65/307 (21%), Positives = 123/307 (40%)
Query: 331 EEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSS 390
E +++ P+ S +++++ K + S K+ T SKK + LSS N ++
Sbjct: 459 ELIISKPITS----RQKSIQANQFKNTVLNSKISKKTETTMSKKRKTNSSLSSKNKKKNN 514
Query: 391 SMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSS 450
S + +D + K + + + + + + S ++ SK K L +SS
Sbjct: 515 SDSENDTDNERDSGSDNDDAGDKNNNKSDQEKDNSSSDSDYKDSK-------KKLKRSSS 567
Query: 451 TVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANA 510
+ RL ++ ES T+ + + + + W EV+ ++ KW+ +D N
Sbjct: 568 EPIKRSRLSNLDDKESKTTTTTTTNTLSNNEKVEIESWIEVF---DHEKKKWISIDLINK 624
Query: 511 IIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSA---WW--- 564
ID E Y+VA + KDVT RY + + KR+ A WW
Sbjct: 625 EIDKPLNFEKIL----DPFSYVVAISKYQIKDVTSRYTNNYIGSSLKRLPIAQIKWWLQL 680
Query: 565 --DAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKN 622
DA+ P E+E+ +K + + L ++ ++ R E + Y+
Sbjct: 681 VGDAINNPT-EVENDNEPVSKFILDSKKIISVNIDLLNNLSIDERKSIEEI----DVYEK 735
Query: 623 HQLYVIE 629
+L + E
Sbjct: 736 QELIIKE 742
Score = 113 (44.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 600 EDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILG-FCSGHAVYPRSC 658
E EL + P P++ +K+H ++V+E+ + KY P LG F H +Y +
Sbjct: 734 EKQELIIKESKLPFPSSFAQFKSHPIFVLEKDIAKYCSPDPSSKPLGLFNETHKIYHKDQ 793
Query: 659 VQTLKTKERWLREALQVKANEVPVKVCSG 687
++ L T ++W++ V + P+K+ G
Sbjct: 794 IKVLHTSDKWVQNGRMVIEGQQPLKIVKG 822
Score = 52 (23.4 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 110 DEGRLQDNVLDGGEEMYDSDWEDGSIPVACSKENHPESDIKGVTIEFDAADSVTKKP-VR 168
+EG + +N LD EE+ ++ + G E+ E +I T EF + ++ KK V+
Sbjct: 46 EEGDI-NNSLDTDEEIGENQDDAGDA------EDAIEFEID--TNEFKSKENGKKKRIVK 96
Query: 169 RASAEDKELAELVHKVHLLCLLA 191
+ ++K +H+ L C LA
Sbjct: 97 KVDLKEKHNCLYLHRTVLTCYLA 119
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 127 DSDWE----DGSIPVACSKEN--HPESDIKGVTIEFDAADSVTKKPVRRASAEDKELAE 179
D +WE D S + P D + + EFD D + + + D+E+ E
Sbjct: 5 DIEWEESNNDNSTTTTTTTTTTASPRFD-ESINNEFDDEDKEEEGDINNSLDTDEEIGE 62
>SGD|S000000964 [details] [associations]
symbol:RAD4 "Protein that recognizes and binds damaged DNA
during NER" species:4932 "Saccharomyces cerevisiae" [GO:0000111
"nucleotide-excision repair factor 2 complex" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;IMP] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 SGD:S000000964 GO:GO:0005829
GO:GO:0043161 GO:GO:0003684 EMBL:BK006939 KO:K01530
RefSeq:NP_011093.3 GeneID:856913 KEGG:sce:YER166W GO:GO:0006289
EMBL:U18917 RefSeq:NP_011089.4 GeneID:856909 KEGG:sce:YER162C
KO:K10838 PDB:2QSF PDB:2QSG PDB:2QSH PDBsum:2QSF PDBsum:2QSG
PDBsum:2QSH GO:GO:0000111 eggNOG:COG5535 PANTHER:PTHR12135
EMBL:M26050 EMBL:M24928 PIR:S30814 ProteinModelPortal:P14736
SMR:P14736 DIP:DIP-1547N IntAct:P14736 MINT:MINT-396392
STRING:P14736 PaxDb:P14736 PeptideAtlas:P14736 EnsemblFungi:YER162C
GeneTree:ENSGT00390000005194 HOGENOM:HOG000074544 OMA:FKGRHGT
OrthoDB:EOG4Z0FG0 EvolutionaryTrace:P14736 NextBio:983347
Genevestigator:P14736 GermOnline:YER162C Uniprot:P14736
Length = 754
Score = 134 (52.2 bits), Expect = 6.4e-06, Sum P(3) = 6.3e-06
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 485 PLYWAEVYCSGENLTGKWVHVDAANA-IIDG---EQKVEAAAAAC--KTSLRYIVAF-AG 537
P++W EV+ + + KW+ VD N I+ K+ AC + LRY++A+
Sbjct: 313 PIFWCEVW---DKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRK 369
Query: 538 CGAKDVTRRYCMKWY--RIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVAD 595
G +DVTRRY +W ++ +R+ D R++ + L+ K + D
Sbjct: 370 YGCRDVTRRYA-QWMNSKVRKRRITKD--DFGEKWFRKVITA----LHHRKRTK---IDD 419
Query: 596 RNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSGHA--- 652
ED R +E +P + Q KNH YV+E+ + + QI+ P G+ H
Sbjct: 420 ---YEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVG 476
Query: 653 ----VYPRSCVQTLKTKERW 668
VY + + LK+ +W
Sbjct: 477 KVLKVYAKRDIADLKSARQW 496
Score = 52 (23.4 bits), Expect = 6.4e-06, Sum P(3) = 6.3e-06
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 119 LDGGEEMYDSD-WEDGSIPVACSKENHPESDIKGVTIEFDAA---DSVTKKPVRRA-SAE 173
+ EE YDS+ +ED + + + + ++ +++E + +S ++ R S E
Sbjct: 83 IQSSEEDYDSEEFEDVT-------DGNEVAGVEDISVEIKPSSKRNSDARRTSRNVCSNE 135
Query: 174 DKELAELVHKVHLLCLLARG 193
+++ + H ++L+CL+ G
Sbjct: 136 ERKRRKYFHMLYLVCLMVHG 155
Score = 46 (21.3 bits), Expect = 6.4e-06, Sum P(3) = 6.3e-06
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 244 VRSSVSTRRSF----HSDLAHALESREGTPEEIAALSVALFRALKLTTRFV 290
+ S + +R F SD A+ G P+ VA+ RA + R +
Sbjct: 233 IEMSANNKRKFKTLKRSDFLRAVSKGHGDPDISVQGFVAMLRACNVNARLI 283
>POMBASE|SPCC4G3.10c [details] [associations]
symbol:rhp42 "DNA repair protein Rhp42" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006298 "mismatch
repair" evidence=IGI] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 PomBase:SPCC4G3.10c GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003684 GO:GO:0006298
GO:GO:0006289 GO:GO:0000109 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 InterPro:IPR018026 TIGRFAMs:TIGR00605 PIR:T41366
RefSeq:NP_587828.1 ProteinModelPortal:P87235 STRING:P87235
EnsemblFungi:SPCC4G3.10c.1 GeneID:2539465 KEGG:spo:SPCC4G3.10c
OMA:YPESETE OrthoDB:EOG4DJP4K NextBio:20800627 Uniprot:P87235
Length = 686
Score = 109 (43.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 58/215 (26%), Positives = 90/215 (41%)
Query: 485 PLYWAEVYCSGENLTGKWVHVDAA--NAIIDGEQK-VEAAAAACKTS-LRY--IVAFAG- 537
P++W E+Y E KW+ VDA N + + E A ++ LR + A+
Sbjct: 323 PIFWTEIYDQSEK---KWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDND 379
Query: 538 CGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRN 597
AKDVT RY Y+ S R+ + + G L + KD+ +
Sbjct: 380 LYAKDVTLRYTD--YQ--SSRLKKIRHVSFADKYFDFYKAIFGQLAKRN--KDA----ED 429
Query: 598 SLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKG-PI--LGFCSG---- 650
E+ ELE++ P + +KNH +V+ R L + + L P P+ F +G
Sbjct: 430 IYEEKELESKVPIRE-PKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTATFGNGKKAT 488
Query: 651 -HAVYPRSCVQTLKTKERWLREALQVKANEVPVKV 684
VY R V KT E + +E +K E P K+
Sbjct: 489 SEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKM 523
Score = 64 (27.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 110 DEGRLQDNVLDGGEE--MYDSD---WEDGSIPVACSKENHPESDIKGVTIEFDAADSVTK 164
++G +DN G E +D D WE + ++ +K+ + D+ VT +TK
Sbjct: 81 EKGSDEDNEKLGSSEDDEFDDDFDTWEQ--VDLSPNKQED-KKDLHIVTQHI--TPQLTK 135
Query: 165 KPVR-RASAEDKELAELVHKVHLLCLLARG 193
+ + +SA DK + +H +H CLL G
Sbjct: 136 ESKKGSSSAMDKSIRLSIHIMHFTCLLYHG 165
>ASPGD|ASPL0000008254 [details] [associations]
symbol:AN6186 species:162425 "Emericella nidulans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01031 SMART:SM01032 GO:GO:0005634
GO:GO:0003684 EMBL:BN001301 GO:GO:0006289 EMBL:AACD01000105
eggNOG:COG5535 PANTHER:PTHR12135 OrthoDB:EOG4DJP4K
RefSeq:XP_663790.1 EnsemblFungi:CADANIAT00006823 GeneID:2871078
KEGG:ani:AN6186.2 HOGENOM:HOG000164138 OMA:IPKNEYG Uniprot:Q5AZU4
Length = 941
Score = 95 (38.5 bits), Expect = 0.00044, Sum P(4) = 0.00044
Identities = 54/192 (28%), Positives = 82/192 (42%)
Query: 485 PLYWAEVYCSGENLTGKWVHVDA---ANAIIDGEQKVEAA-------AAACKTSLRYIVA 534
P+YW EV +T + + VD +NA+ Q+++AA A K + Y++A
Sbjct: 384 PIYWTEVVSP---ITHQVISVDPLVLSNAVA-ATQELQAAFEPRGAKAEKAKQVICYVIA 439
Query: 535 F-AGCGAKDVTRRYCMK--W------YRIASKRVNSAWWDAVLAPLRELESGATGDLNVE 585
F A AKDVT RY + W +R+ K + D LR N E
Sbjct: 440 FSADKTAKDVTTRYLRRRTWPGKTKGFRLGKKGPDDDLLDWFRVLLR----------NYE 489
Query: 586 SSAKDSFVADRNSLEDM-ELETRALTEPLPTNQ-----QAYKNHQLYVIERWLNKYQILY 639
KD D +ED +L T+ PTN+ Q+ + +V+ER+L + + L
Sbjct: 490 RPYKDRTAVD--DIEDAKDLVPNRPTKSKPTNETVDTLQSLRTSSEFVLERFLRREEALR 547
Query: 640 PKG-PILGFCSG 650
P P+ F G
Sbjct: 548 PGALPVRTFTPG 559
Score = 67 (28.6 bits), Expect = 0.00044, Sum P(4) = 0.00044
Identities = 22/97 (22%), Positives = 50/97 (51%)
Query: 110 DEGRLQDNVLDGGEEMYDSDWEDGSIPVACSKENH--PESDIKGVTIEFDAADSVTKKPV 167
D+ + D+ + EE+ DWED +I A + P +++ +T++ +
Sbjct: 58 DKKVVSDSDVTDSEEV---DWED-AIHTAAPATSFVSPHENLE-LTLDRNEVHLEDILQG 112
Query: 168 RRASAE-DKELAELVHKVHLLCLLARGRLIDSVCDDP 203
++A + ++++ L+H++H+ CLLA + + +DP
Sbjct: 113 QKAPTKIERQIRILIHRLHVQCLLAHNAIRNDWINDP 149
Score = 52 (23.4 bits), Expect = 0.00044, Sum P(4) = 0.00044
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 235 VSWFHDNFHVRSSVSTRRSFHSDLAHALESREGTPEEIAALSVALFRALKLTTRFVSIL 293
++ FH + H + + A E EG+ + A L AL RA+ + R V+ L
Sbjct: 263 IASFHKDKHDPELYGEKIPSVEEFRQAAERMEGSRDLGAQLFTALLRAIAIEARLVASL 321
Score = 45 (20.9 bits), Expect = 0.00044, Sum P(4) = 0.00044
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 653 VYPRSCVQTLKTKERWLREALQVKANEVPVK 683
VY RS V +T E W +E + + P+K
Sbjct: 582 VYRRSDVVKCQTAESWHKEGREPLPSAKPLK 612
>TAIR|locus:2157869 [details] [associations]
symbol:PNG1 "peptide-N-glycanase 1" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000224
"peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
activity" evidence=IGI;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0010188 "response to microbial phytotoxin" evidence=IEP]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0006499
"N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR018325 Pfam:PF03835 GO:GO:0005829 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003684
GO:GO:0010193 GO:GO:0009751 InterPro:IPR008979 SUPFAM:SSF49785
GO:GO:0006289 EMBL:AB023033 InterPro:IPR002931 GO:GO:0010188
SMART:SM00460 KO:K01456 GO:GO:0000224 HSSP:Q8K113 eggNOG:NOG307426
EMBL:AY140065 EMBL:BT003161 EMBL:BT003398 EMBL:AK228156
IPI:IPI00533409 RefSeq:NP_199768.1 UniGene:At.27656
UniGene:At.29778 ProteinModelPortal:Q9FGY9 SMR:Q9FGY9 STRING:Q9FGY9
PaxDb:Q9FGY9 PRIDE:Q9FGY9 EnsemblPlants:AT5G49570.1 GeneID:835019
KEGG:ath:AT5G49570 TAIR:At5g49570 HOGENOM:HOG000285938
InParanoid:Q9FGY9 OMA:LPGRQSG PhylomeDB:Q9FGY9
ProtClustDB:CLSN2686981 Genevestigator:Q9FGY9 GermOnline:AT5G49570
Uniprot:Q9FGY9
Length = 721
Score = 121 (47.7 bits), Expect = 0.00095, P = 0.00095
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W E C +L +W+H+D + D E L Y++A + G DVT+RY
Sbjct: 280 WTE--CYSHSLK-RWIHLDPCEGVYDKPMLYEKG---WNKKLNYVIAISKDGVCDVTKRY 333
Query: 548 CMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDME 603
KW+ + S+R + ++ LR L L ES +K + DRN E++E
Sbjct: 334 TKKWHEVLSRRTLTTE-SSLQDGLRTLTRERRRSLMFESLSKLE-LRDRNEQEELE 387
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.126 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 687 676 0.00078 121 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 629 (67 KB)
Total size of DFA: 360 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.78u 0.11s 66.89t Elapsed: 00:00:03
Total cpu time: 66.79u 0.11s 66.90t Elapsed: 00:00:03
Start: Thu May 9 15:05:08 2013 End: Thu May 9 15:05:11 2013