Query 005630
Match_columns 687
No_of_seqs 505 out of 2955
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 11:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234 Fructose-6-phosphate 2 100.0 1.5E-60 3.2E-65 514.1 29.1 334 347-687 24-366 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 2.7E-56 5.8E-61 518.1 35.1 322 350-686 214-566 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 2.5E-50 5.3E-55 409.0 19.7 207 348-559 9-222 (222)
4 PRK01295 phosphoglyceromutase; 99.9 2.6E-25 5.7E-30 224.2 13.7 126 559-686 2-135 (206)
5 PRK13463 phosphatase PhoE; Pro 99.9 1.9E-25 4.2E-30 224.3 12.4 124 559-686 2-130 (203)
6 PRK14116 gpmA phosphoglyceromu 99.9 7.2E-25 1.6E-29 224.3 13.3 125 560-686 2-159 (228)
7 PRK15004 alpha-ribazole phosph 99.9 9E-25 2E-29 218.4 12.7 123 560-686 1-128 (199)
8 PRK01112 phosphoglyceromutase; 99.9 1.6E-24 3.4E-29 222.0 12.5 124 559-686 1-158 (228)
9 PRK14119 gpmA phosphoglyceromu 99.9 2E-24 4.2E-29 220.9 12.9 125 560-686 2-159 (228)
10 PRK14117 gpmA phosphoglyceromu 99.9 4.2E-24 9E-29 219.0 13.3 126 559-686 1-159 (230)
11 PRK14118 gpmA phosphoglyceromu 99.9 8.8E-24 1.9E-28 216.1 13.0 125 560-686 1-158 (227)
12 COG0406 phoE Broad specificity 99.9 1E-23 2.2E-28 211.3 13.1 126 559-686 2-132 (208)
13 PRK14120 gpmA phosphoglyceromu 99.9 1.7E-23 3.7E-28 217.0 13.7 127 558-686 3-160 (249)
14 TIGR03162 ribazole_cobC alpha- 99.9 1.8E-23 3.9E-28 204.0 12.3 119 562-686 1-124 (177)
15 PRK14115 gpmA phosphoglyceromu 99.9 4.6E-23 9.9E-28 213.6 13.3 125 560-686 1-158 (247)
16 TIGR01258 pgm_1 phosphoglycera 99.9 4.7E-23 1E-27 213.3 13.3 125 560-686 1-158 (245)
17 TIGR03848 MSMEG_4193 probable 99.9 5.8E-23 1.3E-27 206.0 12.6 120 561-686 1-126 (204)
18 PRK03482 phosphoglycerate muta 99.9 8.6E-23 1.9E-27 206.3 12.1 124 559-686 1-129 (215)
19 PRK13462 acid phosphatase; Pro 99.9 1.6E-22 3.4E-27 203.6 12.5 120 558-686 4-126 (203)
20 smart00855 PGAM Phosphoglycera 99.9 5.2E-22 1.1E-26 189.9 11.4 120 561-686 1-125 (155)
21 PRK07238 bifunctional RNase H/ 99.9 7E-22 1.5E-26 215.7 13.8 125 558-686 170-299 (372)
22 PF00300 His_Phos_1: Histidine 99.9 1.9E-22 4E-27 190.8 7.9 124 561-686 1-129 (158)
23 KOG0235 Phosphoglycerate mutas 99.8 4.4E-20 9.4E-25 186.0 9.6 127 558-686 4-141 (214)
24 cd05816 CBM20_DPE2_repeat2 Dis 99.8 7.9E-19 1.7E-23 157.5 10.5 93 33-126 2-94 (99)
25 PF00686 CBM_20: Starch bindin 99.8 1.8E-18 3.8E-23 154.1 8.3 90 30-123 1-94 (96)
26 PTZ00123 phosphoglycerate muta 99.7 7.7E-18 1.7E-22 173.4 11.7 113 572-686 1-146 (236)
27 COG0588 GpmA Phosphoglycerate 99.7 9.7E-18 2.1E-22 166.8 8.3 126 559-686 1-159 (230)
28 COG0529 CysC Adenylylsulfate k 99.7 1.2E-16 2.5E-21 155.6 12.8 118 346-477 18-136 (197)
29 cd05807 CBM20_CGTase CGTase, C 99.7 1.1E-16 2.3E-21 144.2 9.5 93 29-124 1-97 (101)
30 PF01583 APS_kinase: Adenylyls 99.7 7E-16 1.5E-20 149.3 13.2 116 350-478 1-116 (156)
31 cd05467 CBM20 The family 20 ca 99.7 4.7E-16 1E-20 137.7 10.2 85 32-119 1-87 (96)
32 cd05820 CBM20_novamyl Novamyl 99.7 4.4E-16 9.6E-21 140.9 10.0 97 30-129 2-102 (103)
33 COG0645 Predicted kinase [Gene 99.6 1.9E-15 4.1E-20 146.7 12.4 143 351-519 1-149 (170)
34 cd05810 CBM20_alpha_MTH Glucan 99.6 1.1E-15 2.3E-20 136.9 8.7 87 32-119 2-89 (97)
35 cd05817 CBM20_DSP Dual-specifi 99.6 1.6E-15 3.6E-20 136.4 9.0 82 33-116 2-83 (100)
36 cd05809 CBM20_beta_amylase Bet 99.6 4.5E-15 9.7E-20 133.3 10.2 87 30-118 2-90 (99)
37 cd05808 CBM20_alpha_amylase Al 99.6 4.3E-15 9.4E-20 131.6 9.8 83 32-118 2-84 (95)
38 cd05815 CBM20_DPE2_repeat1 Dis 99.6 7.3E-15 1.6E-19 132.1 10.0 85 33-120 2-89 (101)
39 cd05814 CBM20_Prei4 Prei4, N-t 99.6 3.7E-15 8E-20 138.4 7.7 83 33-116 3-94 (120)
40 cd05811 CBM20_glucoamylase Glu 99.6 1.3E-14 2.7E-19 131.6 10.7 92 28-123 4-99 (106)
41 PF13671 AAA_33: AAA domain; P 99.6 7.7E-14 1.7E-18 130.7 15.0 120 353-486 1-122 (143)
42 PLN02950 4-alpha-glucanotransf 99.5 2.8E-14 6.2E-19 170.4 11.4 102 26-129 148-249 (909)
43 cd05818 CBM20_water_dikinase P 99.5 5.7E-14 1.2E-18 124.6 10.0 84 31-121 2-85 (92)
44 cd05813 CBM20_genethonin_1 Gen 99.5 5.6E-14 1.2E-18 125.0 9.9 79 32-115 2-80 (95)
45 KOG0635 Adenosine 5'-phosphosu 99.5 1.8E-13 3.8E-18 130.1 10.5 109 348-470 28-136 (207)
46 PRK05537 bifunctional sulfate 99.5 3E-13 6.5E-18 155.4 12.3 147 320-479 361-509 (568)
47 cd05806 CBM20_laforin Laforin 99.4 2.6E-13 5.7E-18 124.4 9.0 83 32-117 2-96 (112)
48 PHA02530 pseT polynucleotide k 99.4 2.7E-12 5.9E-17 135.7 17.7 146 351-516 2-150 (300)
49 cd02027 APSK Adenosine 5'-phos 99.4 1.4E-12 3.1E-17 125.1 12.9 113 353-477 1-113 (149)
50 TIGR01663 PNK-3'Pase polynucle 99.4 3E-12 6.6E-17 145.3 15.1 138 348-527 366-507 (526)
51 COG0703 AroK Shikimate kinase 99.4 4.2E-13 9.1E-18 131.5 6.5 139 353-512 4-144 (172)
52 cd07067 HP_PGM_like Histidine 99.4 7.4E-13 1.6E-17 125.8 7.6 77 561-639 1-83 (153)
53 PTZ00122 phosphoglycerate muta 99.3 1.9E-12 4E-17 138.1 8.9 76 560-639 103-189 (299)
54 TIGR00455 apsK adenylylsulfate 99.3 1.3E-11 2.7E-16 121.9 13.2 117 349-477 16-132 (184)
55 cd02021 GntK Gluconate kinase 99.3 2.1E-11 4.5E-16 115.9 14.0 118 353-484 1-120 (150)
56 TIGR03574 selen_PSTK L-seryl-t 99.3 1.3E-11 2.9E-16 127.7 13.3 112 353-479 1-114 (249)
57 PRK06762 hypothetical protein; 99.3 2.1E-11 4.6E-16 118.0 13.1 115 351-483 2-117 (166)
58 PRK00889 adenylylsulfate kinas 99.3 3.2E-11 6.9E-16 117.9 13.8 115 349-477 2-116 (175)
59 COG2062 SixA Phosphohistidine 99.3 5.9E-12 1.3E-16 122.6 7.6 66 559-626 1-66 (163)
60 PRK05506 bifunctional sulfate 99.3 1.2E-11 2.6E-16 144.3 10.6 120 346-478 455-574 (632)
61 cd00227 CPT Chloramphenicol (C 99.3 4.4E-11 9.5E-16 117.3 12.5 118 352-483 3-132 (175)
62 PF08433 KTI12: Chromatin asso 99.3 8.4E-11 1.8E-15 123.8 15.5 134 353-507 3-138 (270)
63 PRK10848 phosphohistidine phos 99.3 1.2E-11 2.6E-16 120.3 8.2 63 560-626 1-63 (159)
64 TIGR00249 sixA phosphohistidin 99.3 9E-12 1.9E-16 120.3 7.2 63 560-626 1-63 (152)
65 PRK03846 adenylylsulfate kinas 99.3 6.8E-11 1.5E-15 118.4 13.7 119 346-478 19-138 (198)
66 COG4639 Predicted kinase [Gene 99.2 7.7E-11 1.7E-15 113.1 12.7 112 351-478 2-114 (168)
67 COG4088 Predicted nucleotide k 99.2 9.8E-11 2.1E-15 117.0 12.6 135 353-506 3-138 (261)
68 TIGR01313 therm_gnt_kin carboh 99.2 2.7E-10 5.8E-15 109.9 13.7 114 354-483 1-115 (163)
69 PRK06193 hypothetical protein; 99.2 9.4E-11 2E-15 118.6 10.1 68 558-627 41-115 (206)
70 cd07040 HP Histidine phosphata 99.2 4.9E-11 1.1E-15 112.3 7.6 64 561-626 1-66 (153)
71 PRK13948 shikimate kinase; Pro 99.2 1.7E-10 3.7E-15 114.8 11.7 139 350-511 9-150 (182)
72 PRK11545 gntK gluconate kinase 99.2 3.4E-10 7.3E-15 110.4 13.3 141 357-527 1-143 (163)
73 PRK15416 lipopolysaccharide co 99.2 4.6E-11 9.9E-16 120.2 7.1 85 558-645 53-139 (201)
74 cd00464 SK Shikimate kinase (S 99.1 2.2E-10 4.7E-15 108.7 10.8 139 354-512 2-140 (154)
75 PRK00625 shikimate kinase; Pro 99.1 3.8E-10 8.3E-15 111.4 10.4 137 353-511 2-141 (173)
76 PRK05541 adenylylsulfate kinas 99.1 8.2E-10 1.8E-14 108.1 12.7 115 350-480 6-120 (176)
77 PRK12339 2-phosphoglycerate ki 99.1 2.9E-09 6.3E-14 107.3 16.2 126 350-484 2-142 (197)
78 TIGR03575 selen_PSTK_euk L-ser 99.1 7.3E-10 1.6E-14 120.0 12.4 128 353-482 1-175 (340)
79 KOG4754 Predicted phosphoglyce 99.1 2.1E-10 4.6E-15 114.4 7.5 132 553-685 9-167 (248)
80 PLN02950 4-alpha-glucanotransf 99.1 4.4E-10 9.5E-15 134.9 10.8 86 33-120 9-98 (909)
81 KOG4238 Bifunctional ATP sulfu 99.1 3.7E-10 8E-15 119.8 8.9 110 348-470 47-157 (627)
82 PRK14532 adenylate kinase; Pro 99.0 7.1E-10 1.5E-14 109.6 8.7 141 353-516 2-155 (188)
83 PRK13946 shikimate kinase; Pro 99.0 2.2E-09 4.8E-14 106.4 11.7 139 350-510 9-150 (184)
84 PRK13949 shikimate kinase; Pro 99.0 2E-09 4.2E-14 105.8 9.7 138 353-511 3-146 (169)
85 TIGR01359 UMP_CMP_kin_fam UMP- 99.0 8.7E-10 1.9E-14 108.1 7.2 152 353-527 1-167 (183)
86 PRK14531 adenylate kinase; Pro 98.9 1.2E-09 2.6E-14 108.2 6.7 140 352-517 3-153 (183)
87 PRK14021 bifunctional shikimat 98.9 3.4E-09 7.5E-14 121.8 11.0 144 350-512 5-151 (542)
88 PRK12337 2-phosphoglycerate ki 98.9 2E-08 4.2E-13 112.2 16.3 151 349-509 253-430 (475)
89 PRK14527 adenylate kinase; Pro 98.9 4.4E-09 9.5E-14 104.6 10.1 160 350-527 5-175 (191)
90 PRK13947 shikimate kinase; Pro 98.9 7.2E-09 1.6E-13 100.5 10.9 137 353-510 3-141 (171)
91 PRK09825 idnK D-gluconate kina 98.9 3.1E-08 6.7E-13 98.0 14.1 146 352-527 4-151 (176)
92 PRK05057 aroK shikimate kinase 98.9 1.7E-08 3.7E-13 99.2 12.0 138 351-511 4-145 (172)
93 PF06414 Zeta_toxin: Zeta toxi 98.9 2.9E-08 6.2E-13 99.6 13.0 128 348-484 12-143 (199)
94 PRK00131 aroK shikimate kinase 98.8 1.2E-08 2.5E-13 98.4 9.6 142 350-513 3-147 (175)
95 PLN02199 shikimate kinase 98.8 2.4E-08 5.2E-13 105.9 10.9 141 351-511 102-251 (303)
96 PRK03731 aroL shikimate kinase 98.8 4.9E-08 1.1E-12 94.9 10.6 137 353-511 4-145 (171)
97 KOG3062 RNA polymerase II elon 98.7 5.7E-08 1.2E-12 98.4 10.8 139 353-507 3-143 (281)
98 PLN02200 adenylate kinase fami 98.7 1.6E-07 3.4E-12 97.2 13.8 153 350-527 42-207 (234)
99 PRK01184 hypothetical protein; 98.7 1.5E-07 3.2E-12 92.7 12.5 139 352-509 2-143 (184)
100 COG3265 GntK Gluconate kinase 98.7 9.4E-08 2E-12 91.5 10.1 141 357-527 1-142 (161)
101 TIGR01360 aden_kin_iso1 adenyl 98.7 1.1E-07 2.5E-12 93.0 11.2 140 352-515 4-154 (188)
102 PRK12338 hypothetical protein; 98.7 3.1E-07 6.8E-12 98.7 14.0 127 350-484 3-152 (319)
103 PRK08154 anaerobic benzoate ca 98.6 1.1E-07 2.5E-12 101.9 9.8 148 347-511 129-276 (309)
104 PRK00279 adk adenylate kinase; 98.6 1.2E-07 2.5E-12 96.2 9.3 147 353-517 2-183 (215)
105 cd01428 ADK Adenylate kinase ( 98.6 4E-07 8.6E-12 89.8 12.6 150 354-517 2-173 (194)
106 KOG3734 Predicted phosphoglyce 98.6 7.9E-08 1.7E-12 100.5 6.9 125 556-686 9-181 (272)
107 PF07931 CPT: Chloramphenicol 98.6 5.5E-07 1.2E-11 89.2 12.3 122 352-482 2-130 (174)
108 PRK13951 bifunctional shikimat 98.6 2E-07 4.4E-12 105.9 10.3 138 353-513 2-139 (488)
109 PF01202 SKI: Shikimate kinase 98.6 3.7E-08 8E-13 95.3 3.5 132 360-512 1-134 (158)
110 KOG3354 Gluconate kinase [Carb 98.5 6.3E-07 1.4E-11 86.4 11.3 122 350-484 11-140 (191)
111 TIGR01351 adk adenylate kinase 98.5 2E-07 4.4E-12 94.2 7.1 146 354-517 2-180 (210)
112 PRK04040 adenylate kinase; Pro 98.4 2E-06 4.3E-11 86.1 12.0 39 351-392 2-40 (188)
113 PRK14530 adenylate kinase; Pro 98.4 1.7E-06 3.7E-11 87.7 11.5 148 353-516 5-181 (215)
114 PRK06696 uridine kinase; Valid 98.4 1.5E-06 3.2E-11 88.8 11.1 54 338-391 9-62 (223)
115 PRK06217 hypothetical protein; 98.4 3.3E-06 7.2E-11 83.5 12.4 129 353-510 3-134 (183)
116 PRK03839 putative kinase; Prov 98.3 8.1E-07 1.8E-11 87.3 6.5 31 353-383 2-32 (180)
117 KOG4609 Predicted phosphoglyce 98.3 4.3E-07 9.3E-12 91.1 4.0 75 558-639 93-172 (284)
118 PF13207 AAA_17: AAA domain; P 98.3 2.9E-06 6.2E-11 77.4 9.0 33 353-390 1-33 (121)
119 cd01672 TMPK Thymidine monopho 98.3 4.8E-05 1E-09 74.6 17.8 34 352-385 1-34 (200)
120 PRK00698 tmk thymidylate kinas 98.3 4.5E-05 9.8E-10 75.8 17.8 34 351-384 3-36 (205)
121 cd02028 UMPK_like Uridine mono 98.2 6.1E-06 1.3E-10 81.8 10.5 150 353-516 1-168 (179)
122 PRK04220 2-phosphoglycerate ki 98.2 2.1E-05 4.6E-10 84.1 15.1 130 349-485 90-238 (301)
123 PRK02496 adk adenylate kinase; 98.2 3.6E-06 7.8E-11 83.0 8.6 138 353-516 3-152 (184)
124 PRK14528 adenylate kinase; Pro 98.2 1E-05 2.2E-10 80.6 11.6 145 353-517 3-157 (186)
125 PRK06761 hypothetical protein; 98.2 5.8E-06 1.3E-10 87.8 10.3 123 351-483 3-128 (282)
126 PRK10078 ribose 1,5-bisphospho 98.2 7.5E-06 1.6E-10 81.2 10.4 25 352-376 3-27 (186)
127 PRK08356 hypothetical protein; 98.2 5.2E-05 1.1E-09 75.8 16.3 120 350-484 4-137 (195)
128 TIGR03263 guanyl_kin guanylate 98.2 1.6E-05 3.4E-10 77.8 12.2 27 352-378 2-28 (180)
129 cd02020 CMPK Cytidine monophos 98.2 2.1E-05 4.5E-10 73.7 12.3 145 353-527 1-146 (147)
130 PLN02674 adenylate kinase 98.2 3.8E-06 8.3E-11 87.5 7.7 148 351-517 31-214 (244)
131 TIGR02322 phosphon_PhnN phosph 98.2 2E-05 4.3E-10 77.2 12.3 26 352-377 2-27 (179)
132 PRK13808 adenylate kinase; Pro 98.2 4.9E-06 1.1E-10 90.2 8.6 147 354-517 3-162 (333)
133 PTZ00088 adenylate kinase 1; P 98.2 8.3E-06 1.8E-10 84.2 9.9 119 350-483 5-131 (229)
134 PRK08233 hypothetical protein; 98.2 3.7E-05 8.1E-10 74.8 14.0 27 350-376 2-28 (182)
135 PRK00300 gmk guanylate kinase; 98.2 1.7E-05 3.7E-10 79.3 11.6 27 350-376 4-30 (205)
136 TIGR00041 DTMP_kinase thymidyl 98.1 0.0002 4.3E-09 70.9 18.7 34 351-384 3-36 (195)
137 PRK13975 thymidylate kinase; P 98.1 6.3E-05 1.4E-09 74.6 15.0 27 351-377 2-28 (196)
138 PRK07261 topology modulation p 98.1 9.9E-06 2.2E-10 79.7 9.0 31 353-383 2-32 (171)
139 PRK07667 uridine kinase; Provi 98.1 3.9E-05 8.5E-10 76.8 13.3 41 350-390 16-56 (193)
140 PRK14738 gmk guanylate kinase; 98.1 2.3E-05 4.9E-10 79.4 11.6 26 349-374 11-36 (206)
141 TIGR02173 cyt_kin_arch cytidyl 98.1 1.1E-05 2.3E-10 77.9 8.7 34 352-390 1-34 (171)
142 PRK05416 glmZ(sRNA)-inactivati 98.1 4.8E-05 1E-09 81.2 14.2 104 351-491 6-115 (288)
143 PRK14526 adenylate kinase; Pro 98.1 7.5E-06 1.6E-10 83.5 7.8 143 354-517 3-178 (211)
144 PRK13973 thymidylate kinase; P 98.1 0.0002 4.3E-09 72.9 17.9 35 351-385 3-37 (213)
145 PRK14737 gmk guanylate kinase; 98.0 6.7E-05 1.4E-09 75.0 13.3 27 350-376 3-29 (186)
146 PRK04182 cytidylate kinase; Pr 98.0 6.4E-06 1.4E-10 80.0 5.6 30 352-381 1-30 (180)
147 PRK06547 hypothetical protein; 98.0 3.5E-05 7.7E-10 76.1 10.9 32 349-380 13-44 (172)
148 PLN02459 probable adenylate ki 98.0 4.6E-05 1E-09 80.1 12.2 115 350-483 28-154 (261)
149 COG1102 Cmk Cytidylate kinase 98.0 1.6E-05 3.4E-10 77.5 7.9 30 352-381 1-30 (179)
150 PF08303 tRNA_lig_kinase: tRNA 98.0 9.9E-05 2.1E-09 72.3 13.3 135 353-519 1-152 (168)
151 PRK08118 topology modulation p 98.0 2.5E-05 5.5E-10 76.6 9.1 32 353-384 3-34 (167)
152 PRK14529 adenylate kinase; Pro 98.0 3.1E-05 6.7E-10 79.7 9.9 115 354-483 3-127 (223)
153 COG0563 Adk Adenylate kinase a 98.0 6.5E-05 1.4E-09 74.8 11.8 140 353-517 2-153 (178)
154 PF00406 ADK: Adenylate kinase 97.9 0.00012 2.6E-09 70.0 11.5 130 356-516 1-142 (151)
155 PRK05480 uridine/cytidine kina 97.9 9.6E-05 2.1E-09 74.4 11.4 39 350-390 5-43 (209)
156 PRK15453 phosphoribulokinase; 97.9 0.00017 3.6E-09 76.6 13.3 43 350-392 4-46 (290)
157 cd01673 dNK Deoxyribonucleosid 97.8 0.00031 6.8E-09 69.6 14.0 25 353-377 1-25 (193)
158 COG0541 Ffh Signal recognition 97.8 0.00036 7.8E-09 77.4 15.4 100 349-455 98-204 (451)
159 PF00485 PRK: Phosphoribulokin 97.8 0.00011 2.4E-09 73.3 10.5 147 353-517 1-178 (194)
160 smart00072 GuKc Guanylate kina 97.8 0.0002 4.3E-09 71.0 12.1 25 351-375 2-26 (184)
161 PF13238 AAA_18: AAA domain; P 97.8 0.00016 3.4E-09 65.9 9.5 22 354-375 1-22 (129)
162 cd02029 PRK_like Phosphoribulo 97.7 0.00011 2.4E-09 77.5 8.4 40 353-392 1-40 (277)
163 PF00625 Guanylate_kin: Guanyl 97.7 0.00061 1.3E-08 67.3 13.2 115 351-483 2-136 (183)
164 TIGR01425 SRP54_euk signal rec 97.7 0.00031 6.7E-09 78.8 11.8 43 349-391 98-140 (429)
165 PLN02348 phosphoribulokinase 97.6 0.00032 7E-09 77.6 10.7 43 348-390 46-103 (395)
166 PRK13974 thymidylate kinase; P 97.6 0.0017 3.8E-08 65.9 15.1 29 351-379 3-31 (212)
167 PLN02924 thymidylate kinase 97.6 0.00058 1.3E-08 70.2 11.4 37 349-385 14-50 (220)
168 cd02030 NDUO42 NADH:Ubiquinone 97.6 0.0012 2.7E-08 67.3 13.7 28 353-380 1-28 (219)
169 PRK13477 bifunctional pantoate 97.5 0.00012 2.7E-09 83.6 6.3 36 350-385 283-318 (512)
170 PRK10867 signal recognition pa 97.5 0.00058 1.3E-08 76.8 11.4 44 349-392 98-142 (433)
171 COG4185 Uncharacterized protei 97.5 0.0015 3.2E-08 63.9 12.5 147 351-517 2-149 (187)
172 PF00448 SRP54: SRP54-type pro 97.5 0.00084 1.8E-08 67.8 11.3 42 351-392 1-42 (196)
173 COG0194 Gmk Guanylate kinase [ 97.5 0.0014 3E-08 65.6 12.5 116 350-484 3-137 (191)
174 PRK00771 signal recognition pa 97.5 0.0005 1.1E-08 77.4 10.2 44 349-392 93-136 (437)
175 PRK00081 coaE dephospho-CoA ki 97.5 0.00029 6.2E-09 70.7 7.4 33 352-385 3-35 (194)
176 KOG3079 Uridylate kinase/adeny 97.5 0.0032 6.9E-08 62.9 14.4 144 349-516 6-161 (195)
177 TIGR00064 ftsY signal recognit 97.5 0.00091 2E-08 70.9 11.4 44 349-392 70-113 (272)
178 KOG2134 Polynucleotide kinase 97.4 0.00013 2.8E-09 79.3 4.8 102 350-484 268-370 (422)
179 PRK09270 nucleoside triphospha 97.4 0.0026 5.6E-08 65.3 14.2 43 348-390 30-73 (229)
180 COG0572 Udk Uridine kinase [Nu 97.4 0.0015 3.2E-08 67.0 12.1 154 349-517 6-180 (218)
181 COG2074 2-phosphoglycerate kin 97.4 0.00059 1.3E-08 70.9 9.2 140 334-484 73-232 (299)
182 PRK14730 coaE dephospho-CoA ki 97.4 0.0007 1.5E-08 68.1 9.5 34 352-385 2-35 (195)
183 TIGR00152 dephospho-CoA kinase 97.4 0.0008 1.7E-08 66.8 9.2 33 353-385 1-33 (188)
184 KOG0780 Signal recognition par 97.4 0.00091 2E-08 73.1 9.9 104 346-455 96-205 (483)
185 COG0125 Tmk Thymidylate kinase 97.3 0.012 2.6E-07 60.1 17.6 36 350-385 2-37 (208)
186 PTZ00301 uridine kinase; Provi 97.3 0.0022 4.9E-08 65.5 12.3 155 351-517 3-179 (210)
187 PLN02842 nucleotide kinase 97.3 0.002 4.2E-08 73.6 12.9 27 355-381 1-27 (505)
188 PRK07933 thymidylate kinase; V 97.3 0.01 2.2E-07 60.5 16.9 34 352-385 1-34 (213)
189 TIGR00959 ffh signal recogniti 97.3 0.0015 3.3E-08 73.4 11.4 44 349-392 97-141 (428)
190 PRK13976 thymidylate kinase; P 97.3 0.0086 1.9E-07 61.1 15.8 27 352-378 1-27 (209)
191 cd03115 SRP The signal recogni 97.3 0.0033 7.2E-08 61.2 12.2 40 353-392 2-41 (173)
192 cd02023 UMPK Uridine monophosp 97.3 0.003 6.5E-08 63.0 12.1 37 353-391 1-37 (198)
193 PF02223 Thymidylate_kin: Thym 97.3 0.025 5.3E-07 55.8 18.4 26 356-381 1-26 (186)
194 PRK14974 cell division protein 97.3 0.0017 3.7E-08 70.9 10.9 44 349-392 138-181 (336)
195 COG2019 AdkA Archaeal adenylat 97.2 0.003 6.5E-08 62.2 11.1 36 351-390 4-39 (189)
196 cd02019 NK Nucleoside/nucleoti 97.2 0.00037 8E-09 58.4 4.2 31 353-385 1-31 (69)
197 PLN02165 adenylate isopentenyl 97.2 0.0027 5.9E-08 69.0 11.9 36 349-384 41-76 (334)
198 TIGR00235 udk uridine kinase. 97.2 0.0063 1.4E-07 61.4 13.5 39 350-390 5-43 (207)
199 cd02022 DPCK Dephospho-coenzym 97.2 0.00099 2.1E-08 65.8 7.3 31 353-384 1-31 (179)
200 PRK10416 signal recognition pa 97.2 0.0029 6.2E-08 68.6 11.3 43 349-391 112-154 (318)
201 PRK14733 coaE dephospho-CoA ki 97.1 0.00086 1.9E-08 68.2 6.7 37 350-386 5-41 (204)
202 PRK09169 hypothetical protein; 97.1 0.0012 2.5E-08 84.6 8.0 139 351-512 2110-2256(2316)
203 PRK00023 cmk cytidylate kinase 97.0 0.0029 6.2E-08 65.2 9.6 35 351-385 4-38 (225)
204 COG1428 Deoxynucleoside kinase 97.0 0.0064 1.4E-07 62.0 11.7 26 351-376 4-29 (216)
205 cd00071 GMPK Guanosine monopho 97.0 0.0012 2.5E-08 62.8 6.1 24 353-376 1-24 (137)
206 COG0237 CoaE Dephospho-CoA kin 97.0 0.0078 1.7E-07 61.2 12.3 34 351-385 2-35 (201)
207 KOG4622 Predicted nucleotide k 97.0 0.0019 4.1E-08 64.9 7.3 122 352-479 2-140 (291)
208 PF00004 AAA: ATPase family as 97.0 0.0036 7.9E-08 57.1 8.7 32 354-388 1-32 (132)
209 PRK07429 phosphoribulokinase; 97.0 0.0051 1.1E-07 66.9 11.2 41 348-390 5-45 (327)
210 cd02025 PanK Pantothenate kina 97.0 0.0037 8.1E-08 64.1 9.6 38 353-390 1-40 (220)
211 COG3896 Chloramphenicol 3-O-ph 97.0 0.0065 1.4E-07 59.4 10.3 126 350-481 22-160 (205)
212 PRK09435 membrane ATPase/prote 96.9 0.0042 9.2E-08 67.7 10.2 42 348-389 53-94 (332)
213 PRK14490 putative bifunctional 96.9 0.0012 2.6E-08 72.8 6.0 35 350-385 4-38 (369)
214 PHA03132 thymidine kinase; Pro 96.9 0.05 1.1E-06 63.3 19.0 25 351-375 257-281 (580)
215 cd07061 HP_HAP_like Histidine 96.9 0.0014 3E-08 67.4 5.3 57 561-626 5-69 (242)
216 PF03668 ATP_bind_2: P-loop AT 96.8 0.019 4.1E-07 61.2 13.4 120 353-507 3-126 (284)
217 COG1936 Predicted nucleotide k 96.7 0.0062 1.3E-07 60.3 8.5 26 352-378 1-26 (180)
218 PLN02318 phosphoribulokinase/u 96.7 0.011 2.4E-07 68.7 11.8 41 347-391 61-101 (656)
219 cd01120 RecA-like_NTPases RecA 96.7 0.0086 1.9E-07 56.1 9.3 37 353-389 1-37 (165)
220 PRK11889 flhF flagellar biosyn 96.7 0.0079 1.7E-07 67.0 9.9 43 349-391 239-281 (436)
221 PF06309 Torsin: Torsin; Inte 96.7 0.0036 7.7E-08 59.1 6.0 50 336-385 38-87 (127)
222 TIGR00017 cmk cytidylate kinas 96.7 0.021 4.6E-07 58.6 12.2 33 351-383 2-34 (217)
223 PLN02772 guanylate kinase 96.6 0.019 4.1E-07 63.8 12.3 27 350-376 134-160 (398)
224 KOG3220 Similar to bacterial d 96.6 0.031 6.8E-07 56.7 12.7 114 352-479 2-144 (225)
225 COG0552 FtsY Signal recognitio 96.6 0.014 3.1E-07 63.1 11.0 91 348-466 136-228 (340)
226 smart00382 AAA ATPases associa 96.6 0.0043 9.2E-08 55.5 6.1 35 352-386 3-37 (148)
227 PRK05439 pantothenate kinase; 96.6 0.0028 6E-08 68.5 5.5 43 348-390 83-127 (311)
228 KOG3347 Predicted nucleotide k 96.6 0.017 3.6E-07 56.2 10.0 35 353-392 9-43 (176)
229 PHA00729 NTP-binding motif con 96.6 0.021 4.6E-07 59.0 11.4 26 351-376 17-42 (226)
230 cd02024 NRK1 Nicotinamide ribo 96.5 0.002 4.3E-08 64.8 3.2 34 353-390 1-34 (187)
231 PF01121 CoaE: Dephospho-CoA k 96.5 0.0055 1.2E-07 61.2 6.3 133 352-511 1-160 (180)
232 cd02026 PRK Phosphoribulokinas 96.4 0.016 3.4E-07 61.6 9.9 36 353-390 1-36 (273)
233 PLN02840 tRNA dimethylallyltra 96.4 0.0048 1E-07 69.1 6.2 36 349-384 19-54 (421)
234 PRK00091 miaA tRNA delta(2)-is 96.4 0.0059 1.3E-07 65.9 6.5 35 350-384 3-37 (307)
235 CHL00181 cbbX CbbX; Provisiona 96.4 0.092 2E-06 56.2 15.4 31 350-380 58-88 (287)
236 PRK14734 coaE dephospho-CoA ki 96.3 0.016 3.4E-07 58.7 8.7 33 352-390 2-34 (200)
237 cd01394 radB RadB. The archaea 96.3 0.059 1.3E-06 54.5 12.6 38 350-387 18-55 (218)
238 PRK12724 flagellar biosynthesi 96.3 0.012 2.5E-07 66.1 8.0 43 350-392 222-265 (432)
239 PRK05800 cobU adenosylcobinami 96.3 0.012 2.6E-07 58.2 7.2 24 353-376 3-26 (170)
240 PRK14960 DNA polymerase III su 96.2 0.064 1.4E-06 63.3 14.2 28 350-377 36-63 (702)
241 PRK12726 flagellar biosynthesi 96.2 0.021 4.6E-07 63.4 9.8 43 350-392 205-247 (407)
242 PRK14732 coaE dephospho-CoA ki 96.2 0.033 7.2E-07 56.2 10.5 30 353-383 1-30 (196)
243 PRK07003 DNA polymerase III su 96.2 0.035 7.5E-07 66.3 12.0 151 350-508 37-192 (830)
244 cd02861 E_set_proteins_like E 96.2 0.016 3.4E-07 50.2 7.0 54 32-96 3-56 (82)
245 PLN02422 dephospho-CoA kinase 96.2 0.04 8.8E-07 57.3 11.3 31 353-384 3-33 (232)
246 KOG0738 AAA+-type ATPase [Post 96.2 0.016 3.4E-07 63.9 8.4 90 315-421 212-302 (491)
247 PTZ00451 dephospho-CoA kinase; 96.2 0.037 7.9E-07 58.0 10.8 34 352-385 2-35 (244)
248 PRK14956 DNA polymerase III su 96.2 0.071 1.5E-06 60.9 13.7 151 350-509 39-195 (484)
249 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.033 7.3E-07 56.2 10.0 39 350-388 37-75 (226)
250 cd00009 AAA The AAA+ (ATPases 96.1 0.043 9.3E-07 49.7 9.8 36 351-386 19-54 (151)
251 PRK09361 radB DNA repair and r 96.1 0.091 2E-06 53.4 13.2 40 349-388 21-60 (225)
252 PRK08084 DNA replication initi 96.1 0.061 1.3E-06 55.6 12.0 37 353-389 47-83 (235)
253 PRK13768 GTPase; Provisional 96.1 0.011 2.4E-07 61.9 6.6 38 351-388 2-39 (253)
254 PRK05973 replicative DNA helic 96.1 0.0063 1.4E-07 63.4 4.7 39 350-388 63-101 (237)
255 PRK03333 coaE dephospho-CoA ki 96.1 0.018 4E-07 64.2 8.4 32 353-385 3-34 (395)
256 cd00984 DnaB_C DnaB helicase C 96.0 0.09 2E-06 53.8 12.6 39 350-388 12-51 (242)
257 PF13521 AAA_28: AAA domain; P 96.0 0.019 4E-07 55.5 7.1 21 354-374 2-22 (163)
258 PRK14955 DNA polymerase III su 96.0 0.1 2.2E-06 58.3 13.7 29 349-377 36-64 (397)
259 PRK08727 hypothetical protein; 96.0 0.086 1.9E-06 54.5 12.3 36 353-388 43-78 (233)
260 PRK12323 DNA polymerase III su 96.0 0.095 2.1E-06 61.8 13.7 28 350-377 37-64 (700)
261 PLN02796 D-glycerate 3-kinase 95.9 0.0082 1.8E-07 65.7 4.8 42 349-390 98-139 (347)
262 TIGR02881 spore_V_K stage V sp 95.9 0.071 1.5E-06 55.8 11.7 29 351-379 42-70 (261)
263 PF05496 RuvB_N: Holliday junc 95.9 0.022 4.8E-07 58.9 7.6 25 353-377 52-76 (233)
264 PRK12377 putative replication 95.9 0.098 2.1E-06 54.9 12.5 40 352-391 102-141 (248)
265 PRK12723 flagellar biosynthesi 95.8 0.052 1.1E-06 60.5 10.7 44 349-392 172-219 (388)
266 PRK10751 molybdopterin-guanine 95.8 0.012 2.6E-07 58.5 5.1 36 350-385 5-40 (173)
267 TIGR03499 FlhF flagellar biosy 95.8 0.01 2.2E-07 63.2 4.9 42 350-391 193-236 (282)
268 PF13173 AAA_14: AAA domain 95.8 0.066 1.4E-06 49.8 9.8 83 352-457 3-85 (128)
269 PRK06893 DNA replication initi 95.8 0.051 1.1E-06 56.0 9.8 35 353-387 41-75 (229)
270 COG1618 Predicted nucleotide k 95.8 0.0084 1.8E-07 58.9 3.7 110 351-464 5-135 (179)
271 TIGR00554 panK_bact pantothena 95.8 0.012 2.6E-07 63.1 5.1 43 348-390 59-103 (290)
272 PLN03046 D-glycerate 3-kinase; 95.7 0.011 2.5E-07 66.1 4.9 43 348-390 209-251 (460)
273 TIGR02237 recomb_radB DNA repa 95.7 0.1 2.2E-06 52.3 11.5 37 350-386 11-47 (209)
274 PRK14949 DNA polymerase III su 95.7 0.1 2.2E-06 63.4 13.0 28 350-377 37-64 (944)
275 PF13401 AAA_22: AAA domain; P 95.7 0.031 6.7E-07 51.2 7.0 28 350-377 3-30 (131)
276 TIGR00176 mobB molybdopterin-g 95.7 0.011 2.3E-07 57.6 4.1 33 353-385 1-33 (155)
277 KOG0744 AAA+-type ATPase [Post 95.7 0.011 2.4E-07 63.7 4.5 28 350-377 176-203 (423)
278 PRK04296 thymidine kinase; Pro 95.7 0.046 9.9E-07 54.7 8.7 36 351-386 2-37 (190)
279 TIGR02880 cbbX_cfxQ probable R 95.7 0.068 1.5E-06 57.0 10.4 29 352-380 59-87 (284)
280 PRK13695 putative NTPase; Prov 95.7 0.11 2.4E-06 50.8 11.1 29 353-381 2-30 (174)
281 PLN02748 tRNA dimethylallyltra 95.7 0.014 3.1E-07 66.3 5.4 35 349-383 20-54 (468)
282 PLN03025 replication factor C 95.6 0.11 2.4E-06 56.0 12.0 23 354-376 37-59 (319)
283 smart00763 AAA_PrkA PrkA AAA d 95.6 0.011 2.4E-07 65.0 4.2 30 348-377 75-104 (361)
284 cd01124 KaiC KaiC is a circadi 95.6 0.11 2.5E-06 50.5 11.0 35 353-387 1-35 (187)
285 PRK07952 DNA replication prote 95.6 0.14 3.1E-06 53.6 12.0 39 352-390 100-138 (244)
286 KOG0730 AAA+-type ATPase [Post 95.6 0.038 8.2E-07 64.4 8.3 30 349-378 466-495 (693)
287 COG1660 Predicted P-loop-conta 95.5 0.28 6.1E-06 51.7 13.9 24 353-377 3-26 (286)
288 PF03029 ATP_bind_1: Conserved 95.5 0.011 2.4E-07 61.5 3.7 33 356-388 1-33 (238)
289 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.016 3.5E-07 49.3 4.1 34 353-386 1-34 (99)
290 TIGR01618 phage_P_loop phage n 95.5 0.094 2E-06 54.1 10.3 23 350-372 11-33 (220)
291 TIGR00174 miaA tRNA isopenteny 95.5 0.012 2.6E-07 63.0 3.9 32 353-384 1-32 (287)
292 PRK11860 bifunctional 3-phosph 95.5 0.22 4.8E-06 59.3 14.8 35 351-385 442-476 (661)
293 PRK13342 recombination factor 95.5 0.15 3.2E-06 57.2 12.7 24 353-376 38-61 (413)
294 PRK14962 DNA polymerase III su 95.5 0.11 2.4E-06 59.4 11.8 28 350-377 35-62 (472)
295 PRK09087 hypothetical protein; 95.5 0.04 8.6E-07 56.9 7.5 117 353-484 46-167 (226)
296 PRK14959 DNA polymerase III su 95.4 0.18 3.9E-06 59.4 13.6 27 351-377 38-64 (624)
297 COG5324 Uncharacterized conser 95.4 0.057 1.2E-06 60.6 8.9 146 350-527 373-528 (758)
298 PRK08181 transposase; Validate 95.4 0.091 2E-06 55.8 10.3 39 352-390 107-145 (269)
299 PRK14722 flhF flagellar biosyn 95.4 0.074 1.6E-06 59.0 9.8 42 350-391 136-179 (374)
300 cd02034 CooC The accessory pro 95.4 0.021 4.5E-07 53.0 4.7 35 354-388 2-36 (116)
301 cd03116 MobB Molybdenum is an 95.4 0.021 4.5E-07 55.9 4.9 34 352-385 2-35 (159)
302 COG3709 Uncharacterized compon 95.4 0.11 2.4E-06 51.3 9.7 120 351-484 5-137 (192)
303 KOG1532 GTPase XAB1, interacts 95.4 0.021 4.5E-07 60.4 4.9 42 347-388 15-56 (366)
304 PRK07994 DNA polymerase III su 95.4 0.2 4.3E-06 59.4 13.6 28 350-377 37-64 (647)
305 KOG3877 NADH:ubiquinone oxidor 95.4 0.4 8.7E-06 51.0 14.3 41 340-380 60-100 (393)
306 TIGR03709 PPK2_rel_1 polyphosp 95.3 0.14 3.1E-06 54.2 11.2 110 349-484 54-183 (264)
307 cd01122 GP4d_helicase GP4d_hel 95.3 0.13 2.8E-06 53.7 10.9 38 350-387 29-67 (271)
308 PF03796 DnaB_C: DnaB-like hel 95.3 0.11 2.4E-06 54.1 10.3 108 350-466 18-137 (259)
309 PRK05896 DNA polymerase III su 95.3 0.24 5.3E-06 58.1 13.9 27 350-376 37-63 (605)
310 PRK14957 DNA polymerase III su 95.3 0.19 4.2E-06 58.4 13.0 28 350-377 37-64 (546)
311 PRK05703 flhF flagellar biosyn 95.3 0.14 3E-06 57.9 11.6 42 351-392 221-264 (424)
312 TIGR00750 lao LAO/AO transport 95.3 0.023 5.1E-07 60.9 5.2 42 348-389 31-72 (300)
313 PRK05201 hslU ATP-dependent pr 95.3 0.13 2.8E-06 58.0 11.0 32 351-382 50-81 (443)
314 PRK08099 bifunctional DNA-bind 95.3 0.057 1.2E-06 60.5 8.4 29 350-378 218-246 (399)
315 PRK14951 DNA polymerase III su 95.2 0.22 4.8E-06 58.7 13.5 29 349-377 36-64 (618)
316 PRK06620 hypothetical protein; 95.2 0.11 2.4E-06 53.1 9.7 25 352-376 45-69 (214)
317 PRK14961 DNA polymerase III su 95.2 0.2 4.4E-06 55.2 12.4 27 350-376 37-63 (363)
318 COG0283 Cmk Cytidylate kinase 95.2 0.016 3.5E-07 59.3 3.4 33 352-384 5-37 (222)
319 PRK08691 DNA polymerase III su 95.2 0.21 4.6E-06 59.4 13.1 29 349-377 36-64 (709)
320 COG2256 MGS1 ATPase related to 95.2 0.027 5.9E-07 62.3 5.4 41 353-393 50-92 (436)
321 PF13189 Cytidylate_kin2: Cyti 95.2 0.13 2.8E-06 51.0 9.7 33 353-385 1-33 (179)
322 PRK14731 coaE dephospho-CoA ki 95.2 0.015 3.3E-07 59.0 3.2 33 350-383 4-36 (208)
323 PRK14958 DNA polymerase III su 95.2 0.23 4.9E-06 57.4 13.1 28 350-377 37-64 (509)
324 PRK04195 replication factor C 95.1 0.081 1.8E-06 60.5 9.4 37 351-390 39-75 (482)
325 PRK07764 DNA polymerase III su 95.1 0.19 4.1E-06 61.2 12.8 27 350-376 36-62 (824)
326 PRK05642 DNA replication initi 95.1 0.13 2.9E-06 53.1 10.1 39 352-390 46-84 (234)
327 TIGR03707 PPK2_P_aer polyphosp 95.1 0.22 4.8E-06 51.8 11.5 111 348-484 28-158 (230)
328 TIGR00150 HI0065_YjeE ATPase, 95.1 0.019 4.1E-07 54.8 3.4 29 350-378 21-49 (133)
329 PRK08903 DnaA regulatory inact 95.1 0.16 3.5E-06 51.7 10.4 37 352-388 43-79 (227)
330 PHA02544 44 clamp loader, smal 95.1 0.55 1.2E-05 50.2 14.9 29 348-376 40-68 (316)
331 cd03246 ABCC_Protease_Secretio 95.0 0.17 3.8E-06 49.4 10.2 26 351-376 28-53 (173)
332 cd02859 AMPKbeta_GBD_like AMP- 95.0 0.07 1.5E-06 46.1 6.5 52 32-95 3-54 (79)
333 TIGR03708 poly_P_AMP_trns poly 95.0 0.21 4.6E-06 57.3 12.1 111 348-484 37-167 (493)
334 PF07728 AAA_5: AAA domain (dy 95.0 0.021 4.5E-07 53.5 3.4 23 354-376 2-24 (139)
335 PF05729 NACHT: NACHT domain 95.0 0.024 5.3E-07 53.5 3.9 27 353-379 2-28 (166)
336 PF00328 His_Phos_2: Histidine 95.0 0.044 9.5E-07 58.2 6.3 44 583-626 62-112 (347)
337 PF03205 MobB: Molybdopterin g 95.0 0.032 7E-07 53.4 4.7 33 353-385 2-34 (140)
338 KOG3308 Uncharacterized protei 95.0 0.048 1E-06 55.4 6.0 35 352-390 5-39 (225)
339 PLN00020 ribulose bisphosphate 94.9 0.086 1.9E-06 58.4 8.4 40 348-390 145-184 (413)
340 cd04163 Era Era subfamily. Er 94.9 0.097 2.1E-06 48.6 7.8 24 351-374 3-26 (168)
341 TIGR02397 dnaX_nterm DNA polym 94.9 0.34 7.4E-06 52.4 13.0 29 349-377 34-62 (355)
342 TIGR00390 hslU ATP-dependent p 94.9 0.045 9.8E-07 61.4 6.2 34 350-383 46-79 (441)
343 PRK14964 DNA polymerase III su 94.9 0.26 5.6E-06 56.7 12.5 27 350-376 34-60 (491)
344 TIGR03600 phage_DnaB phage rep 94.9 0.31 6.7E-06 54.7 13.0 109 349-466 192-312 (421)
345 PRK12727 flagellar biosynthesi 94.9 0.11 2.4E-06 60.0 9.5 42 350-391 349-392 (559)
346 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.21 4.5E-06 51.6 10.7 36 350-385 20-55 (237)
347 PRK06645 DNA polymerase III su 94.9 0.24 5.3E-06 57.1 12.2 28 350-377 42-69 (507)
348 cd01131 PilT Pilus retraction 94.8 0.24 5.2E-06 49.9 10.8 25 353-377 3-27 (198)
349 PRK06921 hypothetical protein; 94.8 0.29 6.2E-06 51.9 11.9 37 351-387 117-154 (266)
350 PRK06526 transposase; Provisio 94.8 0.13 2.8E-06 54.2 9.0 37 351-387 98-134 (254)
351 PF13481 AAA_25: AAA domain; P 94.7 0.057 1.2E-06 53.1 5.9 26 351-376 32-57 (193)
352 PRK00149 dnaA chromosomal repl 94.7 0.28 6E-06 55.6 12.1 38 353-390 150-189 (450)
353 PF00931 NB-ARC: NB-ARC domain 94.7 0.18 3.9E-06 52.7 9.9 28 349-376 17-44 (287)
354 PRK06731 flhF flagellar biosyn 94.7 0.35 7.5E-06 51.5 12.1 42 350-391 74-115 (270)
355 PRK14494 putative molybdopteri 94.7 0.049 1.1E-06 56.5 5.6 34 352-385 2-35 (229)
356 PF01695 IstB_IS21: IstB-like 94.7 0.042 9.2E-07 54.6 4.9 42 351-392 47-88 (178)
357 cd03114 ArgK-like The function 94.7 0.033 7.2E-07 53.7 4.0 36 353-388 1-36 (148)
358 TIGR02655 circ_KaiC circadian 94.7 0.13 2.9E-06 58.9 9.6 48 341-388 253-300 (484)
359 PF01745 IPT: Isopentenyl tran 94.7 0.12 2.7E-06 53.1 8.1 124 352-484 2-140 (233)
360 PRK08116 hypothetical protein; 94.6 0.26 5.6E-06 52.2 10.9 40 351-390 114-153 (268)
361 PRK08939 primosomal protein Dn 94.6 0.33 7.1E-06 52.5 11.8 40 351-390 156-195 (306)
362 PF00910 RNA_helicase: RNA hel 94.6 0.027 5.8E-07 51.1 2.9 24 354-377 1-24 (107)
363 PRK05342 clpX ATP-dependent pr 94.6 0.052 1.1E-06 61.0 5.8 28 352-379 109-136 (412)
364 PF07724 AAA_2: AAA domain (Cd 94.5 0.059 1.3E-06 53.3 5.4 40 351-390 3-43 (171)
365 COG4175 ProV ABC-type proline/ 94.5 0.21 4.5E-06 54.2 9.7 26 350-375 53-78 (386)
366 PRK09183 transposase/IS protei 94.5 0.33 7E-06 51.2 11.3 39 351-389 102-140 (259)
367 TIGR01241 FtsH_fam ATP-depende 94.5 0.31 6.7E-06 55.9 12.0 28 350-377 87-114 (495)
368 TIGR01650 PD_CobS cobaltochela 94.5 0.027 5.7E-07 61.3 3.2 28 353-380 66-93 (327)
369 PRK13341 recombination factor 94.5 0.47 1E-05 57.1 13.8 24 353-376 54-77 (725)
370 PRK11331 5-methylcytosine-spec 94.5 0.074 1.6E-06 60.3 6.6 27 351-377 194-220 (459)
371 PRK04328 hypothetical protein; 94.4 0.26 5.7E-06 51.5 10.3 37 350-386 22-58 (249)
372 PRK09518 bifunctional cytidyla 94.4 0.029 6.3E-07 67.2 3.5 33 353-385 3-35 (712)
373 PRK13886 conjugal transfer pro 94.4 0.37 8E-06 50.5 11.2 110 351-469 3-123 (241)
374 cd04169 RF3 RF3 subfamily. Pe 94.4 0.45 9.7E-06 50.4 12.0 24 353-376 4-27 (267)
375 TIGR03015 pepcterm_ATPase puta 94.3 1.1 2.4E-05 46.4 14.8 26 351-376 43-68 (269)
376 PF13191 AAA_16: AAA ATPase do 94.3 0.039 8.5E-07 53.4 3.7 31 348-378 21-51 (185)
377 PRK14965 DNA polymerase III su 94.3 0.64 1.4E-05 54.6 14.2 29 349-377 36-64 (576)
378 PTZ00361 26 proteosome regulat 94.3 0.99 2.1E-05 51.3 15.1 29 350-378 216-244 (438)
379 TIGR00665 DnaB replicative DNA 94.3 0.44 9.5E-06 53.6 12.4 108 350-466 194-312 (434)
380 PRK05636 replicative DNA helic 94.3 0.31 6.7E-06 56.3 11.3 109 349-466 263-382 (505)
381 KOG1969 DNA replication checkp 94.3 0.041 8.8E-07 64.7 4.1 41 349-392 324-364 (877)
382 TIGR02012 tigrfam_recA protein 94.3 0.32 7E-06 53.0 10.9 38 350-387 54-91 (321)
383 KOG2170 ATPase of the AAA+ sup 94.3 0.08 1.7E-06 56.8 6.0 45 341-385 100-144 (344)
384 PRK14950 DNA polymerase III su 94.2 0.35 7.7E-06 56.8 11.9 27 350-376 37-63 (585)
385 cd01895 EngA2 EngA2 subfamily. 94.2 0.15 3.3E-06 48.0 7.3 24 351-374 2-25 (174)
386 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.32 6.9E-06 51.2 10.4 37 350-386 35-71 (259)
387 PRK14969 DNA polymerase III su 94.2 0.46 9.9E-06 55.2 12.5 28 350-377 37-64 (527)
388 PHA02575 1 deoxynucleoside mon 94.1 0.033 7.2E-07 57.5 2.8 23 352-374 1-23 (227)
389 PRK00440 rfc replication facto 94.1 0.34 7.4E-06 51.4 10.5 25 354-378 41-65 (319)
390 PF03266 NTPase_1: NTPase; In 94.1 0.06 1.3E-06 53.1 4.4 28 354-381 2-29 (168)
391 cd01121 Sms Sms (bacterial rad 94.1 0.36 7.9E-06 53.6 10.9 38 350-387 81-118 (372)
392 PRK08760 replicative DNA helic 94.1 0.42 9.1E-06 54.8 11.8 109 349-466 227-346 (476)
393 PRK14963 DNA polymerase III su 94.0 0.36 7.8E-06 55.8 11.2 29 349-377 34-62 (504)
394 PF09848 DUF2075: Uncharacteri 94.0 0.34 7.3E-06 53.1 10.5 25 351-375 1-25 (352)
395 cd00983 recA RecA is a bacter 94.0 0.41 8.9E-06 52.3 10.9 38 350-387 54-91 (325)
396 PRK12269 bifunctional cytidyla 94.0 0.032 7E-07 67.9 2.7 33 351-383 34-66 (863)
397 KOG1533 Predicted GTPase [Gene 93.9 0.048 1E-06 56.6 3.4 38 351-388 2-39 (290)
398 PRK03992 proteasome-activating 93.9 0.17 3.6E-06 56.5 8.0 28 350-377 164-191 (389)
399 PF13245 AAA_19: Part of AAA d 93.9 0.062 1.4E-06 46.1 3.6 25 352-376 11-35 (76)
400 TIGR00362 DnaA chromosomal rep 93.9 0.52 1.1E-05 52.6 11.9 38 353-390 138-177 (405)
401 COG4615 PvdE ABC-type sideroph 93.9 0.14 3E-06 56.9 7.1 48 350-397 348-402 (546)
402 PRK14954 DNA polymerase III su 93.9 0.78 1.7E-05 54.3 13.7 30 349-378 36-65 (620)
403 PRK14723 flhF flagellar biosyn 93.9 0.53 1.1E-05 56.7 12.4 42 350-391 184-227 (767)
404 PRK14088 dnaA chromosomal repl 93.8 1.2 2.6E-05 50.6 14.8 37 353-389 132-170 (440)
405 cd04156 ARLTS1 ARLTS1 subfamil 93.8 0.084 1.8E-06 49.8 4.7 21 354-374 2-22 (160)
406 PRK06321 replicative DNA helic 93.8 0.65 1.4E-05 53.3 12.6 108 349-466 224-343 (472)
407 cd00154 Rab Rab family. Rab G 93.8 0.083 1.8E-06 48.7 4.5 21 354-374 3-23 (159)
408 PF02492 cobW: CobW/HypB/UreG, 93.8 0.077 1.7E-06 52.4 4.5 32 353-385 2-33 (178)
409 COG1419 FlhF Flagellar GTP-bin 93.8 1 2.2E-05 50.5 13.5 43 350-392 202-246 (407)
410 TIGR00416 sms DNA repair prote 93.8 0.14 3.1E-06 58.2 7.3 47 341-387 84-130 (454)
411 PRK14087 dnaA chromosomal repl 93.8 1.4 3.1E-05 50.2 15.2 37 354-390 144-182 (450)
412 COG0470 HolB ATPase involved i 93.8 0.31 6.8E-06 51.7 9.5 27 350-376 23-49 (325)
413 PRK08006 replicative DNA helic 93.7 0.68 1.5E-05 53.1 12.7 109 350-466 223-343 (471)
414 PRK14729 miaA tRNA delta(2)-is 93.7 0.1 2.2E-06 56.3 5.7 89 351-445 4-104 (300)
415 cd03228 ABCC_MRP_Like The MRP 93.7 0.52 1.1E-05 45.9 10.3 26 351-376 28-53 (171)
416 PRK09111 DNA polymerase III su 93.7 0.57 1.2E-05 55.2 12.3 29 350-378 45-73 (598)
417 cd00878 Arf_Arl Arf (ADP-ribos 93.7 0.092 2E-06 49.5 4.8 21 354-374 2-22 (158)
418 cd01887 IF2_eIF5B IF2/eIF5B (i 93.7 0.32 7E-06 46.0 8.5 22 353-374 2-23 (168)
419 cd01393 recA_like RecA is a b 93.7 0.44 9.5E-06 48.2 9.9 28 350-377 18-45 (226)
420 cd01886 EF-G Elongation factor 93.6 1.2 2.5E-05 47.4 13.4 23 354-376 2-24 (270)
421 cd02035 ArsA ArsA ATPase funct 93.6 0.072 1.6E-06 54.3 4.2 38 353-390 1-38 (217)
422 PRK08533 flagellar accessory p 93.6 0.61 1.3E-05 48.2 11.0 35 351-385 24-58 (230)
423 PRK14493 putative bifunctional 93.5 0.087 1.9E-06 56.1 4.7 32 353-385 3-34 (274)
424 PRK11823 DNA repair protein Ra 93.5 0.57 1.2E-05 53.3 11.6 38 350-387 79-116 (446)
425 PRK14948 DNA polymerase III su 93.5 0.54 1.2E-05 55.6 11.7 26 352-377 39-64 (620)
426 TIGR03689 pup_AAA proteasome A 93.5 0.15 3.2E-06 58.9 6.8 28 351-378 216-243 (512)
427 TIGR03598 GTPase_YsxC ribosome 93.5 0.87 1.9E-05 44.4 11.4 26 349-374 16-41 (179)
428 cd04162 Arl9_Arfrp2_like Arl9/ 93.5 0.088 1.9E-06 50.8 4.3 21 354-374 2-22 (164)
429 cd04161 Arl2l1_Arl13_like Arl2 93.4 0.082 1.8E-06 51.1 4.0 21 354-374 2-22 (167)
430 cd03230 ABC_DR_subfamily_A Thi 93.4 0.61 1.3E-05 45.6 10.2 26 351-376 26-51 (173)
431 PRK14086 dnaA chromosomal repl 93.4 0.88 1.9E-05 53.6 13.0 37 354-390 317-355 (617)
432 PRK08506 replicative DNA helic 93.4 0.64 1.4E-05 53.2 11.8 108 350-466 191-309 (472)
433 PRK06305 DNA polymerase III su 93.4 0.65 1.4E-05 52.9 11.8 28 350-377 38-65 (451)
434 cd03229 ABC_Class3 This class 93.4 0.8 1.7E-05 45.0 11.0 26 351-376 26-51 (178)
435 PRK09302 circadian clock prote 93.4 0.7 1.5E-05 53.2 12.1 38 350-387 30-68 (509)
436 TIGR00073 hypB hydrogenase acc 93.4 0.088 1.9E-06 53.2 4.2 28 349-376 20-47 (207)
437 TIGR00382 clpX endopeptidase C 93.3 0.16 3.5E-06 57.1 6.7 25 352-376 117-141 (413)
438 COG4608 AppF ABC-type oligopep 93.3 0.25 5.4E-06 52.4 7.6 26 351-376 39-64 (268)
439 PRK12402 replication factor C 93.3 0.64 1.4E-05 49.8 11.1 26 353-378 38-63 (337)
440 PRK05595 replicative DNA helic 93.3 0.7 1.5E-05 52.4 11.8 109 349-466 199-318 (444)
441 PRK09165 replicative DNA helic 93.3 0.81 1.8E-05 52.8 12.4 109 349-466 215-348 (497)
442 cd04139 RalA_RalB RalA/RalB su 93.3 0.074 1.6E-06 50.0 3.4 21 353-373 2-22 (164)
443 PRK00411 cdc6 cell division co 93.3 1.4 3.1E-05 48.4 14.0 31 349-379 53-83 (394)
444 cd02854 Glycogen_branching_enz 93.3 0.38 8.3E-06 43.5 7.8 61 32-99 6-71 (99)
445 cd00881 GTP_translation_factor 93.3 0.6 1.3E-05 44.9 9.8 23 354-376 2-24 (189)
446 COG1132 MdlB ABC-type multidru 93.2 0.35 7.5E-06 56.3 9.5 109 352-466 356-490 (567)
447 PTZ00454 26S protease regulato 93.2 0.27 5.9E-06 55.1 8.2 28 350-377 178-205 (398)
448 PRK12422 chromosomal replicati 93.2 1 2.2E-05 51.2 12.9 34 354-387 144-177 (445)
449 CHL00195 ycf46 Ycf46; Provisio 93.2 0.24 5.2E-06 56.9 7.8 29 350-378 258-286 (489)
450 TIGR00635 ruvB Holliday juncti 93.2 0.076 1.6E-06 56.4 3.6 25 352-376 31-55 (305)
451 PRK06995 flhF flagellar biosyn 93.1 0.1 2.2E-06 59.8 4.7 42 350-391 255-298 (484)
452 COG1763 MobB Molybdopterin-gua 93.1 0.11 2.4E-06 51.1 4.3 35 351-385 2-36 (161)
453 smart00178 SAR Sar1p-like memb 93.1 0.19 4.2E-06 49.4 6.1 24 350-373 16-39 (184)
454 COG3911 Predicted ATPase [Gene 93.1 1.4 3E-05 43.2 11.5 33 351-387 9-41 (183)
455 COG1484 DnaC DNA replication p 93.1 0.12 2.6E-06 54.4 4.8 41 350-390 104-144 (254)
456 TIGR02640 gas_vesic_GvpN gas v 93.0 0.072 1.6E-06 56.0 3.2 24 353-376 23-46 (262)
457 COG4240 Predicted kinase [Gene 93.0 0.14 3.1E-06 53.1 5.0 42 349-390 48-90 (300)
458 PF02367 UPF0079: Uncharacteri 93.0 0.099 2.1E-06 49.2 3.6 28 350-377 14-41 (123)
459 cd03214 ABC_Iron-Siderophores_ 92.9 0.86 1.9E-05 44.8 10.5 26 351-376 25-50 (180)
460 PRK05748 replicative DNA helic 92.9 1.1 2.3E-05 51.0 12.5 109 349-466 201-321 (448)
461 KOG1384 tRNA delta(2)-isopente 92.9 0.61 1.3E-05 50.7 9.8 127 350-484 6-160 (348)
462 PF06745 KaiC: KaiC; InterPro 92.9 0.36 7.8E-06 49.1 7.9 37 350-386 18-55 (226)
463 TIGR01243 CDC48 AAA family ATP 92.9 1.6 3.4E-05 52.7 14.5 28 350-377 486-513 (733)
464 PRK15455 PrkA family serine pr 92.9 0.087 1.9E-06 61.3 3.7 31 348-378 100-130 (644)
465 PRK14489 putative bifunctional 92.8 0.12 2.6E-06 57.1 4.7 36 350-385 204-239 (366)
466 PF07726 AAA_3: ATPase family 92.8 0.048 1E-06 51.8 1.3 25 354-378 2-26 (131)
467 PRK06851 hypothetical protein; 92.8 0.14 3.1E-06 56.7 5.1 36 350-385 29-64 (367)
468 cd03213 ABCG_EPDR ABCG transpo 92.8 0.78 1.7E-05 45.8 10.0 25 351-375 35-59 (194)
469 PF04665 Pox_A32: Poxvirus A32 92.8 1.3 2.8E-05 46.5 11.8 30 350-379 12-41 (241)
470 PRK05563 DNA polymerase III su 92.7 1.1 2.3E-05 52.6 12.5 27 350-376 37-63 (559)
471 cd03247 ABCC_cytochrome_bd The 92.7 0.79 1.7E-05 45.0 9.8 26 351-376 28-53 (178)
472 PHA02542 41 41 helicase; Provi 92.7 0.96 2.1E-05 51.9 11.9 40 349-388 188-227 (473)
473 TIGR00101 ureG urease accessor 92.7 0.11 2.3E-06 52.7 3.7 27 351-377 1-27 (199)
474 cd03216 ABC_Carb_Monos_I This 92.7 0.65 1.4E-05 45.1 9.1 25 351-375 26-50 (163)
475 COG1703 ArgK Putative periplas 92.7 0.18 3.9E-06 54.2 5.5 41 347-387 47-87 (323)
476 PRK05707 DNA polymerase III su 92.7 1.3 2.9E-05 48.3 12.4 29 348-376 19-47 (328)
477 PRK10646 ADP-binding protein; 92.7 0.12 2.5E-06 50.6 3.8 28 350-377 27-54 (153)
478 cd04105 SR_beta Signal recogni 92.7 0.4 8.6E-06 48.4 7.8 22 353-374 2-23 (203)
479 KOG0733 Nuclear AAA ATPase (VC 92.7 0.22 4.8E-06 57.8 6.4 28 350-377 222-249 (802)
480 PTZ00369 Ras-like protein; Pro 92.6 0.078 1.7E-06 52.3 2.6 22 352-373 6-27 (189)
481 cd04171 SelB SelB subfamily. 92.6 0.32 6.8E-06 45.7 6.6 22 352-373 1-22 (164)
482 COG0464 SpoVK ATPases of the A 92.6 0.14 3E-06 58.6 4.9 32 349-380 274-305 (494)
483 TIGR01243 CDC48 AAA family ATP 92.6 0.56 1.2E-05 56.5 10.2 29 350-378 211-239 (733)
484 COG1072 CoaA Panthothenate kin 92.6 0.24 5.2E-06 52.6 6.2 34 346-379 77-110 (283)
485 COG1855 ATPase (PilT family) [ 92.5 0.1 2.3E-06 58.5 3.6 33 351-383 263-295 (604)
486 TIGR01242 26Sp45 26S proteasom 92.5 0.084 1.8E-06 58.0 2.9 28 350-377 155-182 (364)
487 TIGR02868 CydC thiol reductant 92.5 0.2 4.4E-06 57.6 6.2 27 350-376 360-386 (529)
488 cd01130 VirB11-like_ATPase Typ 92.5 0.29 6.2E-06 48.6 6.5 26 351-376 25-50 (186)
489 PRK10463 hydrogenase nickel in 92.5 0.12 2.5E-06 55.5 3.9 29 349-377 102-130 (290)
490 PRK14952 DNA polymerase III su 92.5 2 4.4E-05 50.6 14.3 29 349-377 33-61 (584)
491 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.5 1.1 2.3E-05 42.7 10.1 94 351-464 26-122 (144)
492 KOG0742 AAA+-type ATPase [Post 92.4 1.2 2.6E-05 49.8 11.5 127 259-390 274-420 (630)
493 TIGR03880 KaiC_arch_3 KaiC dom 92.4 0.68 1.5E-05 47.1 9.1 37 350-386 15-51 (224)
494 KOG0991 Replication factor C, 92.4 0.9 2E-05 47.5 9.8 24 353-376 50-73 (333)
495 cd01891 TypA_BipA TypA (tyrosi 92.3 0.45 9.7E-06 47.1 7.6 22 353-374 4-25 (194)
496 PRK06835 DNA replication prote 92.3 0.16 3.6E-06 55.4 4.8 39 352-390 184-222 (329)
497 PRK08840 replicative DNA helic 92.3 1.4 2.9E-05 50.6 12.4 109 350-466 216-336 (464)
498 TIGR02782 TrbB_P P-type conjug 92.3 0.88 1.9E-05 49.0 10.3 119 351-482 132-251 (299)
499 PRK00080 ruvB Holliday junctio 92.3 0.11 2.3E-06 56.4 3.3 27 351-377 51-77 (328)
500 cd02037 MRP-like MRP (Multiple 92.3 0.16 3.4E-06 49.4 4.2 37 353-389 2-38 (169)
No 1
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-60 Score=514.13 Aligned_cols=334 Identities=53% Similarity=0.896 Sum_probs=313.4
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005630 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (687)
Q Consensus 347 ~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl 426 (687)
....|.+|+|+|||++|||.++.+|.++|.|.|+++..||.++|||..........||.+.++++...+.++|..+++|+
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence 35679999999999999999999999999999999999999999998877666678999999999999999999999999
Q ss_pred HHHHh-cCCeEEEEeCCCCCHHHHHHHHHHH--cCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHH
Q 005630 427 ISWMH-EGGQVGIFDATNSSRKRRNMLMKMA--EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (687)
Q Consensus 427 ~~~L~-~~G~iVIlDAtn~~~e~R~~l~el~--~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~ 503 (687)
..|+. .+|+++|+||||.++++|..+..+. +.++++.|||+.|+|++++.+||+.++..+|||++. +.+.++++|+
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~-~~e~a~~dfl 182 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGK-DQEEALKDFL 182 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCC-CHHHHHHHHH
Confidence 99988 5799999999999999999999993 689999999999999999999999898889999988 9999999999
Q ss_pred HHHHhhhhccccCCC--C---CceEEeecccCCcceeEEeccccCCCccccccccccCCCCccEEEeccCCcccccCCCc
Q 005630 504 NRLANYEKVYEPVDE--G---SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRI 578 (687)
Q Consensus 504 ~Ri~~y~~~yEPl~e--~---~yik~in~~~~~g~~i~~~~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~n~~~~~ 578 (687)
+|+..|++.|||+++ + +|||+||+ |+++++|+|.|||++++||||||+|..+++|||+|||++++|+.+++
T Consensus 183 ~ri~~ye~~YePld~~~d~~lsyik~in~----g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~gri 258 (438)
T KOG0234|consen 183 KRIRNYEKYYEPLDRARDKDLSYIKIINV----GEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGRI 258 (438)
T ss_pred HHHHhhhhccCcCChhhccccceEEEecc----cceEEEecccceehhhhhhhhhccccCCceEEEEecCCCcccccccc
Confidence 999999999999993 2 99999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc-cCCCcccccccccccccccCCCCHHHHHHhC
Q 005630 579 GGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWRALDEINAGVCDGMTYEEIKKNM 657 (687)
Q Consensus 579 ~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i-~g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~ 657 (687)
+||.+|+++|.++|+.+++++.+... .-..||||+++||+|||+.+ ....+.+|..|+|++.|.|+||++++|.+.|
T Consensus 259 ggds~ls~~g~~ya~~l~~f~~~~~~--~dl~vwts~~~rti~ta~~l~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~~~ 336 (438)
T KOG0234|consen 259 GGDSPLSERGSQYAKSLIKFVEEQSS--SDLDVWTSQRKRTIQTAEGLKLDYSVEQWKALDEIDAGVCEGLTYEEIETNY 336 (438)
T ss_pred CCcccccHHHHHHHHHHHHHHhhhcc--cCceeccchHHHHhhhHhhcCcchhhhhHhhcCcccccccccccHHHHHHhC
Confidence 99999999999999999999987622 22489999999999999966 2333589999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCHHHHHHhhC
Q 005630 658 PEEYEARKKDKLRYRYPRGESYLDVIQRQC 687 (687)
Q Consensus 658 P~e~~~~~~d~~~~r~PgGES~~dl~~Rv~ 687 (687)
|+++.....|+++||||+||||.|+.+|+.
T Consensus 337 p~e~~~r~~dky~yry~~gESy~D~v~Rle 366 (438)
T KOG0234|consen 337 PEEFALRDKDKYRYRYPGGESYSDLVQRLE 366 (438)
T ss_pred chhhhhccCCcceeecCCCCCHHHHHHhhh
Confidence 999999999999999999999999999973
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=2.7e-56 Score=518.05 Aligned_cols=322 Identities=28% Similarity=0.533 Sum_probs=280.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++++|+|+||||+||||+|++|+++|+|.++++++|+.|.||+.+.+. ...++.+.+....+ .+++..+++++..|
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~~~e--~~~~~~~~~d~~~~ 289 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAAEVE--FRIAKAIAHDMTTF 289 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHHHHH--HHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999976432 22333444443333 45677888889999
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC----ceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGN----CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~----~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (687)
+.+.|+++|+||||.++.+|..+.+. .+.+ ++++|||+.|++.+.+++|+.+++...|+ +++++.++|++
T Consensus 290 v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-----~~e~~~~~~~~ 364 (664)
T PTZ00322 290 ICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-----APEDFVDRYYE 364 (664)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHH
Confidence 99888899999999999999887766 5444 48999999999999999999887765564 47899999999
Q ss_pred HHHhhhhccccCCC----C-CceEEeecccCCcceeEEeccccCCCccccccccccCCCCccEEEeccCCcccccCCCcC
Q 005630 505 RLANYEKVYEPVDE----G-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 579 (687)
Q Consensus 505 Ri~~y~~~yEPl~e----~-~yik~in~~~~~g~~i~~~~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~n~~~~~~ 579 (687)
|++.|++.||+++. + +|||+ +. |++|.+|+|+|||+++|||||||+|+.+|+|||+|||+|.+|..++++
T Consensus 365 ~~~~~~~~Ye~~~~~~d~~~~~ik~-~~----g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~~ 439 (664)
T PTZ00322 365 VIEQLEAVYKSLNPVTDCDLTYIRI-ED----TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIG 439 (664)
T ss_pred HHHHHHhhcccCCccccCCCceEEE-ec----CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCccC
Confidence 99999999999763 2 89996 44 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc--------------------CCCccccccccc
Q 005630 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------------------GFPKIQWRALDE 639 (687)
Q Consensus 580 gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~--------------------g~~v~~~~~L~E 639 (687)
||.|||+.|++||++++++|.+.. ..+++.|||||++||+|||+++. ++++..++.|+|
T Consensus 440 Gd~pLt~~G~~qA~~l~~~l~~~~-~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~E 518 (664)
T PTZ00322 440 GNSRLTERGRAYSRALFEYFQKEI-STTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDD 518 (664)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcc-CCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCc
Confidence 999999999999999999886431 23567999999999999998772 345677899999
Q ss_pred ccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHH-Hhh
Q 005630 640 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVI-QRQ 686 (687)
Q Consensus 640 i~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~-~Rv 686 (687)
++||.|||++++++.+.||+++..|..|++++++|+|||+.|+. .|+
T Consensus 519 i~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~ 566 (664)
T PTZ00322 519 INHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARL 566 (664)
T ss_pred CCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 686
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=2.5e-50 Score=409.03 Aligned_cols=207 Identities=57% Similarity=0.979 Sum_probs=170.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
+..+++|+||||||+|||+||++|+++|.|.|+++.+||.|+|||...+...+..||++.++++.+.++++|..+|+||.
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHH
Q 005630 428 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (687)
Q Consensus 428 ~~L~-~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~R 505 (687)
+||. ++|+++|+||||.++++|+.+.+. .+.+++++|||++|+|++++++||+.++..+|||+++ ++++|++||++|
T Consensus 89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~-~~e~A~~Df~~R 167 (222)
T PF01591_consen 89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM-DPEEAIEDFKKR 167 (222)
T ss_dssp HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS--HHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC-CHHHHHHHHHHH
Confidence 9999 779999999999999999999998 8888999999999999999999999999888999999 999999999999
Q ss_pred HHhhhhccccCCC---C--CceEEeecccCCcceeEEeccccCCCccccccccccCCCC
Q 005630 506 LANYEKVYEPVDE---G--SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTP 559 (687)
Q Consensus 506 i~~y~~~yEPl~e---~--~yik~in~~~~~g~~i~~~~i~gyL~~rIvffLmN~~~~~ 559 (687)
|+.|+++||||++ + +|||+||+ |+++++|+|+|||+++|||||||+|++|
T Consensus 168 I~~Ye~~YEpl~~e~d~~lsyIKiin~----g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 168 IEHYEKVYEPLDEEEDEDLSYIKIINV----GEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp HHHHHTT-----TTTTTTSEEEEEETT----TTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred HHhhcccccccccccccCceEEEEEcC----CceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 9999999999992 2 99999999 9999999999999999999999999875
No 4
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.92 E-value=2.6e-25 Score=224.19 Aligned_cols=126 Identities=27% Similarity=0.318 Sum_probs=114.0
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~ 630 (687)
+++|||||||++.+|..++++| |.|||+.|++||++++++|... ..+++.|||||+.||+|||++| .+ ++
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA--GLKFDIAFTSALSRAQHTCQLILEELGQPGLE 79 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCC
Confidence 4789999999999999999888 9999999999999999988653 4679999999999999999999 33 67
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+..++.|+|+++|.|+|++.+++++.+|+.+..|+.+++.+++|+|||+.|+.+|+
T Consensus 80 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 135 (206)
T PRK01295 80 TIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARV 135 (206)
T ss_pred eEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHH
Confidence 88899999999999999999999999998776666667789999999999999997
No 5
>PRK13463 phosphatase PhoE; Provisional
Probab=99.92 E-value=1.9e-25 Score=224.26 Aligned_cols=124 Identities=28% Similarity=0.456 Sum_probs=116.0
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCccc
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~ 633 (687)
+++|||||||++.+|..++++| |.|||+.|++||+++++.|. ..+++.|||||+.||+|||+++ .++++..
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK----DLSIHAIYSSPSERTLHTAELIKGERDIPIIA 77 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHhcCCCCceE
Confidence 3789999999999999999888 99999999999999998764 4578999999999999999998 4678889
Q ss_pred ccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 634 ~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++.|+|+++|.|+|++.+++.+.||+.+..|+.++..+++|+|||+.|+..|+
T Consensus 78 ~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~ 130 (203)
T PRK13463 78 DEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRV 130 (203)
T ss_pred CcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997
No 6
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.92 E-value=7.2e-25 Score=224.25 Aligned_cols=125 Identities=25% Similarity=0.318 Sum_probs=109.6
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc---C---CCc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPK 631 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~---g---~~v 631 (687)
++|||||||+|.+|..++++| |.|||+.|++||+++++.|.+. ..+++.|||||+.||+|||++|. + +++
T Consensus 2 ~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~~ 79 (228)
T PRK14116 2 AKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEA--GLEFDQAYTSVLTRAIKTLHYALEESDQLWIPE 79 (228)
T ss_pred CEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCcCCCCc
Confidence 679999999999999999998 9999999999999999988643 35799999999999999999982 2 567
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCC------------------------CCCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~------------------------~~~r~PgGES~~dl~~Rv 686 (687)
..++.|+|++||.|||++++++.++||+. +..|..+. ..+++|+|||+.++.+|+
T Consensus 80 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv 159 (228)
T PRK14116 80 TKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERV 159 (228)
T ss_pred ccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHH
Confidence 78899999999999999999999999986 66676431 134689999999999997
No 7
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.92 E-value=9e-25 Score=218.37 Aligned_cols=123 Identities=25% Similarity=0.274 Sum_probs=114.4
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCcccc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~~ 634 (687)
|+|||||||++.+|..++++| |.|||+.|++||+++++.|. ..+++.|||||+.||+|||+++ .++++.++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR----DVPFDLVLCSELERAQHTARLVLSDRQLPVHII 76 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHh----CCCCCEEEECchHHHHHHHHHHHhcCCCCceeC
Confidence 569999999999999998888 99999999999999998774 4578999999999999999999 56788899
Q ss_pred cccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 635 ~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+.|+|+++|.|+|++.+++.+.+|+.+..|..++....+|+|||+.|+..|+
T Consensus 77 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv 128 (199)
T PRK15004 77 PELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRV 128 (199)
T ss_pred hhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999888888899999999999997
No 8
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.91 E-value=1.6e-24 Score=221.99 Aligned_cols=124 Identities=30% Similarity=0.288 Sum_probs=112.3
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc---------
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------- 627 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~--------- 627 (687)
|++|||||||++.+|..++++| |.+||+.|++||++++++|. ..+++.|||||+.||+|||+.+.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~----~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~ 76 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIK----DLPIDCIFTSTLVRSLMTALLAMTNHSSGKIP 76 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhh----cCCCCEEEEcCcHHHHHHHHHHHHhhcccccc
Confidence 3789999999999999999988 99999999999999998875 35899999999999999999873
Q ss_pred -----------------------CCCcccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 005630 628 -----------------------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQ 684 (687)
Q Consensus 628 -----------------------g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~ 684 (687)
.+++...+.|+|+++|.|||++++++.++||+.+..|+.+++.+++|+|||+.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~ 156 (228)
T PRK01112 77 YIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQ 156 (228)
T ss_pred cccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHH
Confidence 135667899999999999999999999999988777778888899999999999999
Q ss_pred hh
Q 005630 685 RQ 686 (687)
Q Consensus 685 Rv 686 (687)
|+
T Consensus 157 Rv 158 (228)
T PRK01112 157 RT 158 (228)
T ss_pred HH
Confidence 97
No 9
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.91 E-value=2e-24 Score=220.91 Aligned_cols=125 Identities=26% Similarity=0.302 Sum_probs=108.7
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc------CCCc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 631 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~------g~~v 631 (687)
++|||||||+|.+|..++++| |.|||+.|++||++++++|... ..+++.|||||++||+|||++|. +.++
T Consensus 2 ~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~~ 79 (228)
T PRK14119 2 PKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVREN--NIAIDVAFTSLLTRALDTTHYILTESKQQWIPV 79 (228)
T ss_pred CEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCccHHHHHHHHHHHHhcccCCCCe
Confidence 679999999999999999998 9999999999999999988653 45799999999999999999982 2577
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------------CCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------------~~r~PgGES~~dl~~Rv 686 (687)
..++.|+|++||.|||++.+++.++||+. +..|..+.. ...+|+|||+.|+..|+
T Consensus 80 ~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 159 (228)
T PRK14119 80 YKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRV 159 (228)
T ss_pred eECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHHH
Confidence 78899999999999999999999999986 566654421 12468999999999997
No 10
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.91 E-value=4.2e-24 Score=218.99 Aligned_cols=126 Identities=22% Similarity=0.229 Sum_probs=109.7
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc------CCC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~------g~~ 630 (687)
|++|||||||+|++|..++++| |.|||+.|++||+++++.|... ..+++.|||||++||+|||+++. +++
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~ 78 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA--GIEFDLAFTSVLKRAIKTTNLALEASDQLWVP 78 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHc--CCCCCEEEECCcHHHHHHHHHHHHhcccCCCC
Confidence 3689999999999999999998 9999999999999999988643 45789999999999999999862 367
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHH-HHHHHcC------------------------CCCCCCCCCCCHHHHHHh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 685 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d------------------------~~~~r~PgGES~~dl~~R 685 (687)
+...+.|+|+++|.|||++.+++.++||+. +..|..+ ..++++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~R 158 (230)
T PRK14117 79 VEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLER 158 (230)
T ss_pred ceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHH
Confidence 788899999999999999999999999987 5556533 123478999999999999
Q ss_pred h
Q 005630 686 Q 686 (687)
Q Consensus 686 v 686 (687)
+
T Consensus 159 v 159 (230)
T PRK14117 159 A 159 (230)
T ss_pred H
Confidence 7
No 11
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.90 E-value=8.8e-24 Score=216.11 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=108.0
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc------CCCc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 631 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~------g~~v 631 (687)
|+|||||||+|.+|..++++| |.|||+.|++||+++++.|.+. ..+++.|||||+.||+|||+.|. ++++
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~ 78 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEA--GYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQ 78 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCe
Confidence 469999999999999999998 9999999999999999988653 35789999999999999999992 2567
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------------CCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------------~~r~PgGES~~dl~~Rv 686 (687)
...+.|+|+++|.|||++.+++.+++|+. +..|..+.. ..++|+|||+.++.+|+
T Consensus 79 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv 158 (227)
T PRK14118 79 VKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERV 158 (227)
T ss_pred ecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHH
Confidence 78889999999999999999999999976 555654311 24579999999999997
No 12
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.90 E-value=1e-23 Score=211.30 Aligned_cols=126 Identities=36% Similarity=0.485 Sum_probs=118.8
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCccc
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~ 633 (687)
+++|||||||++.+|..++++| |.|||+.|++||+.+++.|... ...++.||+||+.||+|||+++ .+.++..
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~ 79 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAAR--DIGFDAIYSSPLKRAQQTAEPLAEELGLPLEV 79 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhc--CCCCCEEEECchHHHHHHHHHHHHhcCCCcee
Confidence 5789999999999999999988 9999999999999999988654 5789999999999999999999 5677889
Q ss_pred ccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 634 ~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++.|+|+++|.|||++.+++.+.+|.++..|..+++.+.+|+|||+.|+..|+
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~ 132 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRV 132 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997
No 13
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.90 E-value=1.7e-23 Score=217.00 Aligned_cols=127 Identities=28% Similarity=0.313 Sum_probs=110.2
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc------CC
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GF 629 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~------g~ 629 (687)
++++|||||||++.+|..++++| |.|||+.|++||+++++.|... ...++.|||||+.||+|||+++. ++
T Consensus 3 ~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~--~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~~ 80 (249)
T PRK14120 3 MTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEA--GVLPDVVYTSLLRRAIRTANLALDAADRLWI 80 (249)
T ss_pred CCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEecChHHHHHHHHHHHHhcccCCC
Confidence 45889999999999999999988 9999999999999999988643 34689999999999999999982 35
Q ss_pred CcccccccccccccccCCCCHHHHHHhCHH-HHHHHHcCCCCC----------------------CCCCCCCHHHHHHhh
Q 005630 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPE-EYEARKKDKLRY----------------------RYPRGESYLDVIQRQ 686 (687)
Q Consensus 630 ~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~-e~~~~~~d~~~~----------------------r~PgGES~~dl~~Rv 686 (687)
++..++.|+|+++|.|||++.+++.++||+ .+..|..+.... .+|+|||+.|+.+|+
T Consensus 81 ~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~Rv 160 (249)
T PRK14120 81 PVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARF 160 (249)
T ss_pred CeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHHH
Confidence 778889999999999999999999999997 488887643222 258999999999997
No 14
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.90 E-value=1.8e-23 Score=204.00 Aligned_cols=119 Identities=31% Similarity=0.422 Sum_probs=110.1
Q ss_pred EEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCcccccc
Q 005630 562 ILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 636 (687)
Q Consensus 562 I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~~~~ 636 (687)
|||||||++.+|..+.+ | |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .++++...+.
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 75 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLA----DVPFDAVYSSPLSRCRELAEILAERRGLPIIKDPR 75 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhc----CCCCCEEEECchHHHHHHHHHHHhhcCCCceECCc
Confidence 68999999999998887 5 99999999999999998774 4689999999999999999999 4678889999
Q ss_pred cccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 637 L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
|+|+++|.|+|++.+++.+.|| .+..|..++..+.+|+|||+.++..|+
T Consensus 76 L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~ 124 (177)
T TIGR03162 76 LREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRV 124 (177)
T ss_pred cccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHH
Confidence 9999999999999999999998 688898888888999999999999997
No 15
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.89 E-value=4.6e-23 Score=213.56 Aligned_cols=125 Identities=27% Similarity=0.317 Sum_probs=108.3
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CCc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~v 631 (687)
|+|||||||++.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ +++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~--~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE--GYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPV 78 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCc
Confidence 569999999999999999888 8999999999999999988643 4578999999999999999999 34 367
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------------CCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------------~~r~PgGES~~dl~~Rv 686 (687)
...+.|+|+++|.|||++.+++.+++|+. +..|..+.. .+++|+|||+.|+..|+
T Consensus 79 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 158 (247)
T PRK14115 79 EKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARV 158 (247)
T ss_pred eECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHH
Confidence 78999999999999999999999999986 666654211 23589999999999997
No 16
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.89 E-value=4.7e-23 Score=213.25 Aligned_cols=125 Identities=29% Similarity=0.344 Sum_probs=107.5
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CCc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~v 631 (687)
|+|||||||+|.+|..++++| |.+||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ +++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~--~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i 78 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE--GYEFDVAYTSLLKRAIHTLNIALDELDQLWIPV 78 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCe
Confidence 569999999999999999988 9999999999999999988643 4578999999999999999999 23 566
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------CC------CCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RY------RYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------~~------r~PgGES~~dl~~Rv 686 (687)
...+.|+|+++|.|||++.+++.+.||+. +..|..+.. .| .+|+|||+.|+..|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv 158 (245)
T TIGR01258 79 KKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARV 158 (245)
T ss_pred eeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHH
Confidence 77899999999999999999999999976 556653311 12 378999999999997
No 17
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.89 E-value=5.8e-23 Score=205.96 Aligned_cols=120 Identities=30% Similarity=0.393 Sum_probs=108.5
Q ss_pred cEEEeccCCcccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCcccc
Q 005630 561 PILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~~~~~g---D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~~ 634 (687)
+|||||||++.+|..++++| |.|||+.|++||++++++|. ..+++.|||||+.||+|||+++ .++++..+
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA----DLPIAAIVSSPLERCRETAEPIAEARGLPPRVD 76 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEeCcHHHHHHHHHHHHHhcCCCceEC
Confidence 48999999999999888887 48999999999999998875 4589999999999999999999 57788999
Q ss_pred cccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 635 ~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+.|+|+++|.|+|++.+++.+. +.+..|..++..+.+|+|||+.++..|+
T Consensus 77 ~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 126 (204)
T TIGR03848 77 ERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARA 126 (204)
T ss_pred cccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHH
Confidence 9999999999999999999764 4577788888888999999999999996
No 18
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.88 E-value=8.6e-23 Score=206.34 Aligned_cols=124 Identities=29% Similarity=0.312 Sum_probs=105.6
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCccc
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~ 633 (687)
|++|||||||++++|..++++| |.|||+.|++||+.++++|. ..+++.|||||+.||+|||++| .++++..
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~----~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAK----ELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 3789999999999999888877 99999999999999998875 3578999999999999999998 5778888
Q ss_pred ccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 634 ~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++.|+|+++|.|+|++.+++...++.....+..++..+++|+|||+.++..|+
T Consensus 77 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv 129 (215)
T PRK03482 77 DPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRM 129 (215)
T ss_pred ChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHH
Confidence 99999999999999999998765432222222345567889999999999997
No 19
>PRK13462 acid phosphatase; Provisional
Probab=99.88 E-value=1.6e-22 Score=203.62 Aligned_cols=120 Identities=25% Similarity=0.323 Sum_probs=102.3
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcccCCCc-ccc
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPK-IQW 634 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~g~~v-~~~ 634 (687)
.+++|||||||++++|..++++| |.|||+.|++||+++++.|... ....+.|||||+.||+|||+.+ +.++ ..+
T Consensus 4 ~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i-~~~~~~~~ 80 (203)
T PRK13462 4 RNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGEL--ELDDPLVISSPRRRALDTAKLA-GLTVDEVS 80 (203)
T ss_pred cccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECchHHHHHHHHHh-cCcccccC
Confidence 45889999999999999999888 8999999999999999887543 2223379999999999999988 5554 578
Q ss_pred cccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 635 ~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+.|+|+++|.|+|++.+++.+.||+ +..|. ..+|+|||+.|+..|+
T Consensus 81 ~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv 126 (203)
T PRK13462 81 GLLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERA 126 (203)
T ss_pred ccccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHH
Confidence 9999999999999999999999987 33442 3458999999999997
No 20
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.87 E-value=5.2e-22 Score=189.92 Aligned_cols=120 Identities=31% Similarity=0.383 Sum_probs=103.8
Q ss_pred cEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCccccc
Q 005630 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~~~ 635 (687)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|.... ..+++.|||||+.||+|||+++ .+.+ ...+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~-~~~~ 78 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLG-RLRFDVIYSSPLLRARETAEALAIALGLG-EVDP 78 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCEEEeCchHHHHHHHHHHHHhcCCC-CCCh
Confidence 48999999999998777664 99999999999999999886432 3589999999999999999999 3444 4789
Q ss_pred ccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 636 ~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
.|+|+++|.|+|++++++.+.+|+.+..| ..+.+|+|||+.|+..|+
T Consensus 79 ~L~E~~~G~~~g~~~~~~~~~~~~~~~~~----~~~~~~~gEs~~~~~~Rv 125 (155)
T smart00855 79 RLRERDYGAWEGLTKEEERAKAWTRPADW----LGAAPPGGESLADVVERL 125 (155)
T ss_pred hhhhcccceecCCcHHHHHHHHHHHHhcc----CCCCCcCCCCHHHHHHHH
Confidence 99999999999999999998887765443 678899999999999996
No 21
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.87 E-value=7e-22 Score=215.70 Aligned_cols=125 Identities=30% Similarity=0.396 Sum_probs=114.1
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCcc
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKI 632 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~ 632 (687)
++++|||||||++.+|..++++| |.+||+.|++||+.+++.|... .+++.|||||+.||+|||+.+ .+.++.
T Consensus 170 ~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~---~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 246 (372)
T PRK07238 170 TPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAAR---GGIDAVVSSPLQRARDTAAAAAKALGLDVT 246 (372)
T ss_pred CceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhcc---CCCCEEEECChHHHHHHHHHHHHhcCCCcE
Confidence 45889999999999999888877 9999999999999999887532 178999999999999999998 567888
Q ss_pred cccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 633 ~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
..+.|+|+++|.|+|++.+++.+.||+.+..|..++ .+++|+|||+.|+..|+
T Consensus 247 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv 299 (372)
T PRK07238 247 VDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRV 299 (372)
T ss_pred ECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHH
Confidence 899999999999999999999999999999998877 67899999999999997
No 22
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.87 E-value=1.9e-22 Score=190.82 Aligned_cols=124 Identities=39% Similarity=0.580 Sum_probs=113.1
Q ss_pred cEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCccccc
Q 005630 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~~~ 635 (687)
+|||||||++.+|..+.+++ |.|||+.|+.||+.+++.|.+. ..+++.|||||+.||+|||+.+ .+.++..++
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~--~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~ 78 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAER--DIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDP 78 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHT--TSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhccccccc--ccCceEEecCCcchhhhhhchhhccccccccccc
Confidence 58999999999998888777 6689999999999999998754 6789999999999999999999 468899999
Q ss_pred ccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 636 ~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
.|+|+++|.|+|++..++.+.+|..+..|..+++.+++|+|||+.++..|+
T Consensus 79 ~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~ 129 (158)
T PF00300_consen 79 RLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRV 129 (158)
T ss_dssp GGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHH
T ss_pred ccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHH
Confidence 999999999999999999999999999999988999999999999999997
No 23
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=4.4e-20 Score=186.02 Aligned_cols=127 Identities=31% Similarity=0.349 Sum_probs=112.9
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---C
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~ 629 (687)
...+++|||||||+||..++++| |.+||+.|+.||.+++++|... +..++.+|||+++||+|||+.+ .+ +
T Consensus 4 ~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~--~~~~~~~~tS~l~RakqT~~~il~~~~~~~~ 81 (214)
T KOG0235|consen 4 NTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDL--NIEFDVCYTSDLKRAKQTAELILEELKQKKV 81 (214)
T ss_pred cceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhc--CCcccEEecCHHHHHHHHHHHHHHhhccCCc
Confidence 35789999999999999999999 9999999999999999999776 7789999999999999999999 33 7
Q ss_pred CcccccccccccccccCCCCHHHHHHhCHHH--HHHHHcCC-CCCCCCCCCCHHHHHHhh
Q 005630 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE--YEARKKDK-LRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 630 ~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e--~~~~~~d~-~~~r~PgGES~~dl~~Rv 686 (687)
|+....+|+|+++|.++||...++.++|+++ +..|.... ....+|.|||+.+++.|+
T Consensus 82 pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~ 141 (214)
T KOG0235|consen 82 PVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRL 141 (214)
T ss_pred ceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999999987 45554433 445678999999999997
No 24
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.78 E-value=7.9e-19 Score=157.52 Aligned_cols=93 Identities=28% Similarity=0.504 Sum_probs=85.7
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCCc
Q 005630 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (687)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~g~NR 112 (687)
|+|+|.+|++.+++.++|+|+++.||+|++++|++|+....+.|++++++|....++||||++++.++ ..+.||.|+||
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~-~~~~WE~g~nr 80 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDS-GVVSWENGPNR 80 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCC-CcEEEEcCCCe
Confidence 79999999999999999999999999999999999999999999999999988779999999998765 67889999999
Q ss_pred cccCCCCCCCceEE
Q 005630 113 LLTGGALQGDSRSA 126 (687)
Q Consensus 113 ~l~~~~~~~~~~~~ 126 (687)
.+..|.++.....+
T Consensus 81 ~~~~p~~~~~~~~~ 94 (99)
T cd05816 81 ELSAPSLKGESSTL 94 (99)
T ss_pred EEECCccCCCCceE
Confidence 99999986664433
No 25
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.75 E-value=1.8e-18 Score=154.12 Aligned_cols=90 Identities=26% Similarity=0.493 Sum_probs=74.9
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc----CCCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005630 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (687)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~ 105 (687)
|.-|+|+| +.++.+++.|+|+||+++||+||++||++|... +++.|.+++.+|. ..+|||||++++.+. .+.
T Consensus 1 ~v~V~F~v-~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~~~eYKy~i~~~~g--~~~ 76 (96)
T PF00686_consen 1 QVSVTFRV-NYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GTPFEYKYVIKDADG--NVI 76 (96)
T ss_dssp EEEEEEEE-SE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TSEEEEEEEEEETTS--EEE
T ss_pred CEEEEEEE-EeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CCEEEEEEEEEeCCC--CEE
Confidence 56799999 569999999999999999999999999999975 6799999999999 668999999988666 669
Q ss_pred eccCCCccccCCCCCCCc
Q 005630 106 VEEGPNRLLTGGALQGDS 123 (687)
Q Consensus 106 wE~g~NR~l~~~~~~~~~ 123 (687)
||.|+||.+..|.....+
T Consensus 77 WE~g~nR~~~~~~~~~~~ 94 (96)
T PF00686_consen 77 WESGENRVLTVPSSGSST 94 (96)
T ss_dssp E-SSSEEEEE--SSSEEE
T ss_pred ECCCCCEEEECCCCCcee
Confidence 999999999988776544
No 26
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.74 E-value=7.7e-18 Score=173.41 Aligned_cols=113 Identities=27% Similarity=0.326 Sum_probs=95.3
Q ss_pred cccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CCccccccccccccc
Q 005630 572 DNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPKIQWRALDEINAG 643 (687)
Q Consensus 572 ~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~v~~~~~L~Ei~~G 643 (687)
+|..++++| |.|||+.|++||+++++.|... +.+++.|||||+.||+|||+++ .+ +++..++.|+|+++|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~--~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G 78 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEK--GFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYG 78 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccc
Confidence 467778888 9999999999999999988653 4689999999999999999999 22 467788999999999
Q ss_pred ccCCCCHHHHHHhCHHHHHHHHcCCCC-------------------------CCCCCCCCHHHHHHhh
Q 005630 644 VCDGMTYEEIKKNMPEEYEARKKDKLR-------------------------YRYPRGESYLDVIQRQ 686 (687)
Q Consensus 644 ~~EG~t~~ei~~~~P~e~~~~~~d~~~-------------------------~r~PgGES~~dl~~Rv 686 (687)
.|||++.+++.++||+.+..++.+++. +++|+|||+.|+..|+
T Consensus 79 ~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv 146 (236)
T PTZ00123 79 ALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERV 146 (236)
T ss_pred cccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHH
Confidence 999999999999999875444443222 3458999999999997
No 27
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.72 E-value=9.7e-18 Score=166.79 Aligned_cols=126 Identities=26% Similarity=0.293 Sum_probs=111.3
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc------cCCC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI------AGFP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i------~g~~ 630 (687)
+++++|+|||||+||..+++.| |.+||+.|+++|...|+.|++. +..||.+|||-++||++|+.++ ..+|
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~--~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ip 78 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE--GLEFDIAYTSVLKRAIKTLNIVLEESDQLWIP 78 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHc--CCCcceeehHHHHHHHHHHHHHhhhhcccCcc
Confidence 4679999999999999999999 9999999999999999999876 7899999999999999999998 3578
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCC---------------------CC----CCHHHHHHh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYP---------------------RG----ESYLDVIQR 685 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~P---------------------gG----ES~~dl~~R 685 (687)
+....+|+|+++|.+.|+.-.+.+++|.++.-..+...|+..+| ++ ||+.+..+|
T Consensus 79 v~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~R 158 (230)
T COG0588 79 VIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVER 158 (230)
T ss_pred hhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHH
Confidence 88888999999999999999999999987644434445566666 44 999999999
Q ss_pred h
Q 005630 686 Q 686 (687)
Q Consensus 686 v 686 (687)
+
T Consensus 159 v 159 (230)
T COG0588 159 V 159 (230)
T ss_pred h
Confidence 7
No 28
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.2e-16 Score=155.63 Aligned_cols=118 Identities=25% Similarity=0.335 Sum_probs=101.3
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005630 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (687)
Q Consensus 346 ~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~d 425 (687)
..++++.+|||+||+||||||||.+|+++|...|++++++|+|.. ++|++.+.+|+++++.++.+++.++|+...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv---R~gL~~dLgFs~edR~eniRRvaevAkll~d- 93 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV---RHGLNRDLGFSREDRIENIRRVAEVAKLLAD- 93 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH---hhcccCCCCCChHHHHHHHHHHHHHHHHHHH-
Confidence 346788999999999999999999999999999999999999777 5788999999999999999999999999555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeC-CHHHHHH
Q 005630 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICN-DRDIIER 477 (687)
Q Consensus 426 l~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~-d~eii~r 477 (687)
+|.+||+..+.+.++.|++++++...+ -|+|++++ +-++.++
T Consensus 94 -------aG~iviva~ISP~r~~R~~aR~~~~~~---~FiEVyV~~pl~vce~ 136 (197)
T COG0529 94 -------AGLIVIVAFISPYREDRQMARELLGEG---EFIEVYVDTPLEVCER 136 (197)
T ss_pred -------CCeEEEEEeeCccHHHHHHHHHHhCcC---ceEEEEeCCCHHHHHh
Confidence 999999999999999999999994433 25665544 3344443
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.68 E-value=1.1e-16 Score=144.20 Aligned_cols=93 Identities=25% Similarity=0.292 Sum_probs=81.4
Q ss_pred ceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccc----ccCCCceEEEEecCCCCCceeeEEEEecCCCCCce
Q 005630 29 GQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG----RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (687)
Q Consensus 29 ~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~----~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~ 104 (687)
.|.-|+|+|++|++..++.++|+||.|.||+|++.+|+.|. ....+.|.+++++|... ++||||++++.+ ..+
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~-~~eyK~~~~~~~--~~~ 77 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGT-TIEFKFIKKNGD--NTV 77 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCC-cEEEEEEEECCC--CCE
Confidence 47889999999999999999999999999999999999643 35789999999999987 899999999865 356
Q ss_pred eeccCCCccccCCCCCCCce
Q 005630 105 IVEEGPNRLLTGGALQGDSR 124 (687)
Q Consensus 105 ~wE~g~NR~l~~~~~~~~~~ 124 (687)
.||.|+||.+..|....++.
T Consensus 78 ~WE~g~nr~~~~p~~~~~~~ 97 (101)
T cd05807 78 TWESGSNHTYTAPSSTTGTI 97 (101)
T ss_pred EEEeCCCEEEeCCCCCceEE
Confidence 79999999999997654443
No 30
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.66 E-value=7e-16 Score=149.31 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=89.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++++|||+|||||||||||++|.++|...|+++.++++|.+| .+.+.+.+|..+++.+.++++.++|+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR---~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~----- 72 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR---HGLNADLGFSKEDREENIRRIAEVAKLLAD----- 72 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC---TTTTTT--SSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh---hccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 478999999999999999999999999999999999998775 456777889989999999999999988665
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rr 478 (687)
+|.+||++++.++++.|+.++++.... .++.|.+.|+ .+++++|
T Consensus 73 ---~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 73 ---QGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp ---TTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES--HHHHHHH
T ss_pred ---CCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCC-HHHHHHh
Confidence 999999999999999999999994432 4444444565 4444443
No 31
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.65 E-value=4.7e-16 Score=137.67 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=77.5
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC-CCceEEEEecCC-CCCceeeEEEEecCCCCCceeeccC
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPP-NHETLDFKFLLKPKYGNGPCIVEEG 109 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~-~~~W~~~l~~~~-~~~~leyKf~i~~~~~~~~~~wE~g 109 (687)
.|+|++++ ++..++.++|+||++.||+||+++|++|+..+ .+.|.++++++. ...+|+|||++++.+ ..+.||.|
T Consensus 1 ~v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~--~~~~wE~~ 77 (96)
T cd05467 1 QVRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDD--GNVQWESG 77 (96)
T ss_pred CEEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCC--CCEEeccC
Confidence 48999999 88999999999999999999999999999998 999999999998 446899999999866 57789999
Q ss_pred CCccccCCCC
Q 005630 110 PNRLLTGGAL 119 (687)
Q Consensus 110 ~NR~l~~~~~ 119 (687)
+||.+..|..
T Consensus 78 ~~r~~~~~~~ 87 (96)
T cd05467 78 SNRVLTVPST 87 (96)
T ss_pred CCeEEEcCCC
Confidence 9999988754
No 32
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.65 E-value=4.4e-16 Score=140.85 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=84.1
Q ss_pred eEEEEEEEEe-cccCCCcEEEEecCCCccCCCCcc--ccc-cccccCCCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005630 30 QFYVSLKMVN-IKLKGDLIPHVYGSVPLVGSWDSS--KAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (687)
Q Consensus 30 ~~~v~lkv~a-P~l~~~~~l~l~Gs~~~LG~Wd~~--kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~ 105 (687)
|.-|+|.|.+ |++..++.++|+||.+.||+||+. +|+ +|...++++|.+++++|... ++||||++++.+ ..+.
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~-~veyK~v~~~~~--g~v~ 78 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGT-YIEFKFLKAPAD--GTGT 78 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCC-cEEEEEEEECCC--CCEE
Confidence 5679999976 799999999999999999999996 456 89999999999999999985 899999999866 3677
Q ss_pred eccCCCccccCCCCCCCceEEEEE
Q 005630 106 VEEGPNRLLTGGALQGDSRSALFR 129 (687)
Q Consensus 106 wE~g~NR~l~~~~~~~~~~~~~~~ 129 (687)
||.|+||.+..|....++..+.++
T Consensus 79 WE~g~Nr~~~~p~~~~~~~~~~w~ 102 (103)
T cd05820 79 WEGGSNHAYTTPSGGTGTVTVTWQ 102 (103)
T ss_pred EEeCCCEeEECCCCCcEEEEEEec
Confidence 999999999999877766655443
No 33
>COG0645 Predicted kinase [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=146.66 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=120.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhC-----CCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-----VNQSADFFRADNPEGMEARNEVAALAMED 425 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g-----~~~~~~f~~~~~e~~~~~~~~vA~~~L~d 425 (687)
+.+++|+|+||+||||+|+.|++.|++..+++|++ ||.+.| ..+...|+.+.....|..+...|..++.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-----rk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~- 74 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-----RKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLS- 74 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-----HHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 36899999999999999999999999998888777 999988 3344567888899999999999999888
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHH
Q 005630 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (687)
Q Consensus 426 l~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (687)
.|..||+|+++.++..|+.++.+ ...++.+..|.|.++ +++++.|+..|+ +|.+++ +...+
T Consensus 75 -------~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~---~d~sDA-~~~il------ 136 (170)
T COG0645 75 -------SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARK---GDASDA-TFDIL------ 136 (170)
T ss_pred -------CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCc-HHHHHHHHHHhC---CCcccc-hHHHH------
Confidence 99999999999999999999999 778888888888774 899999998875 477777 66655
Q ss_pred HHHhhhhccccCCCC
Q 005630 505 RLANYEKVYEPVDEG 519 (687)
Q Consensus 505 Ri~~y~~~yEPl~e~ 519 (687)
..+...++|+.+.
T Consensus 137 --~~q~~~~~~~~~~ 149 (170)
T COG0645 137 --RVQLAEDEPWTEW 149 (170)
T ss_pred --HHHHhhhCCcccc
Confidence 5555567777653
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.62 E-value=1.1e-15 Score=136.95 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=79.2
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCC-CceeeccCC
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPCIVEEGP 110 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~-~~~~wE~g~ 110 (687)
.|+|.+.+-+...++.++|+|+++.||+|++++|++|..++++.|.+++++|... +|||||++++.+.. ..+.||.|+
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~-~veyKyv~~~~~~~~~~v~WE~g~ 80 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPAST-NVEWKCLKRNETNPTAGVQWQGGG 80 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCC-eEEEEEEEEcCCCCcceEEEeeCC
Confidence 5788888888999999999999999999999999999999999999999999874 79999999987753 557899999
Q ss_pred CccccCCCC
Q 005630 111 NRLLTGGAL 119 (687)
Q Consensus 111 NR~l~~~~~ 119 (687)
||.+..|.-
T Consensus 81 Nr~~~~p~~ 89 (97)
T cd05810 81 NNQLTTGNS 89 (97)
T ss_pred CEEEeCCCC
Confidence 999998876
No 35
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.61 E-value=1.6e-15 Score=136.35 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=76.2
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCCc
Q 005630 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (687)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~g~NR 112 (687)
|+|+++++ +..++.|+|+|+++.||+|++++|++|+..+.+.|++++++|. ..++||||++++.++...+.||.|+||
T Consensus 2 v~F~i~~~-t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYP-TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SVYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEE-cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CCcEEEEEEEEecCCCCCeEecCCCCE
Confidence 78999999 8899999999999999999999999999999999999999998 567999999998776667899999999
Q ss_pred cccC
Q 005630 113 LLTG 116 (687)
Q Consensus 113 ~l~~ 116 (687)
.+..
T Consensus 80 ~~~~ 83 (100)
T cd05817 80 VLRT 83 (100)
T ss_pred EEEe
Confidence 9884
No 36
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.60 E-value=4.5e-15 Score=133.28 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=76.1
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCcccc-cccc-ccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeec
Q 005630 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVE 107 (687)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~ka-l~M~-~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE 107 (687)
|.-|+|+|+++++..++.++|+||.+.||+|++.++ +.|. ....+.|++++++|... ++||||++++.+. ..+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~-~veyKyv~~~~~~-~~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGR-NIEFKAIKKSKDG-TNKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCC-cEEEEEEEEcCCC-CeeEEe
Confidence 678999999999999999999999999999999872 5554 35679999999999885 8999999998663 256799
Q ss_pred cCCCccccCCC
Q 005630 108 EGPNRLLTGGA 118 (687)
Q Consensus 108 ~g~NR~l~~~~ 118 (687)
.|+||.+..|.
T Consensus 80 ~g~nr~~~~p~ 90 (99)
T cd05809 80 GGQQSWYPVPL 90 (99)
T ss_pred cCCCeeEECCC
Confidence 99999999987
No 37
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.59 E-value=4.3e-15 Score=131.59 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=74.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCC
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~g~N 111 (687)
-|+|+|++ ++..++.++|+||++.||+||++||++|+....+.|.+++++|... ++||||++++... ...||.|+|
T Consensus 2 ~v~F~v~~-~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~-~~eYKy~~~~~~~--~~~WE~~~n 77 (95)
T cd05808 2 AVTFNVTA-TTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGT-AIEYKYIKKDGSG--TVTWESGPN 77 (95)
T ss_pred eEEEEEEE-ECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCC-eEEEEEEEECCCC--cEEEecCCC
Confidence 48899999 7889999999999999999999999999999999999999999865 7999999987433 356999999
Q ss_pred ccccCCC
Q 005630 112 RLLTGGA 118 (687)
Q Consensus 112 R~l~~~~ 118 (687)
|.+..|.
T Consensus 78 r~~~~~~ 84 (95)
T cd05808 78 RTATTPA 84 (95)
T ss_pred EEEECCC
Confidence 9999764
No 38
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.58 E-value=7.3e-15 Score=132.15 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=72.0
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC---CCceEEEEecCCCCCceeeEEEEecCCCCCceeeccC
Q 005630 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES---ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEG 109 (687)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~---~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~g 109 (687)
|+|++... ...++.++|+|+++.||+|++++|++|..++ .++|++++++|. ..++||||++++. +...+.||.|
T Consensus 2 l~f~i~~~-t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~~~veYky~v~~~-~~~~~~wE~g 78 (101)
T cd05815 2 LSFKLPYY-TQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-GFSSEYNYYVVDD-RKSVLRSESG 78 (101)
T ss_pred EEEEEEEE-ccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-CCcEEEEEEEEcC-CCcEEEeecC
Confidence 67777664 4568999999999999999999999997753 448999999998 5789999999875 5556779999
Q ss_pred CCccccCCCCC
Q 005630 110 PNRLLTGGALQ 120 (687)
Q Consensus 110 ~NR~l~~~~~~ 120 (687)
+||.+..|...
T Consensus 79 ~nr~~~~~~~~ 89 (101)
T cd05815 79 EKRKLVLPEGL 89 (101)
T ss_pred CCEeEECCccc
Confidence 99999988853
No 39
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.57 E-value=3.7e-15 Score=138.35 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=74.4
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc--CCCceEEEEecCCCCCceeeEEEEecC----CCCCce--
Q 005630 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE--SASMWELSFVVPPNHETLDFKFLLKPK----YGNGPC-- 104 (687)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~--~~~~W~~~l~~~~~~~~leyKf~i~~~----~~~~~~-- 104 (687)
|+|+|++|++..++.++|+|++++||+|++++|++|..+ ..+.|.+++++|... ++||||++++. .+.+.+
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~-~veYkY~~~~~~~~~~~~~~~~~ 81 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGV-DFQYRYFVAVVLNDSGPCQVIVR 81 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCC-eEEEEEEEEEeccCCCCccEEEe
Confidence 799999999999999999999999999999999999998 889999999999966 79999999874 344566
Q ss_pred eeccCCC-ccccC
Q 005630 105 IVEEGPN-RLLTG 116 (687)
Q Consensus 105 ~wE~g~N-R~l~~ 116 (687)
.||+++| |.+..
T Consensus 82 ~WE~~~~~R~~~~ 94 (120)
T cd05814 82 KWETHLQPRSIKP 94 (120)
T ss_pred eccCCCCccEecc
Confidence 8999999 76653
No 40
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.57 E-value=1.3e-14 Score=131.55 Aligned_cols=92 Identities=24% Similarity=0.443 Sum_probs=78.7
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC----CCceEEEEecCCCCCceeeEEEEecCCCCCc
Q 005630 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES----ASMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (687)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~----~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~ 103 (687)
+.+.-|+|++.++. ..++.++|+|+++.||+|++.+|++|..++ .+.|.+++++|.. .++||||++++.+ ..
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~-~~veYKy~~~~~~--~~ 79 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAG-TSFEYKFIRKESD--GS 79 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCC-CcEEEEEEEEcCC--Cc
Confidence 45677999999975 689999999999999999999999998764 5899999999984 4799999998755 46
Q ss_pred eeeccCCCccccCCCCCCCc
Q 005630 104 CIVEEGPNRLLTGGALQGDS 123 (687)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~~~ 123 (687)
+.||+|+||.+..|....+.
T Consensus 80 ~~WE~~~nr~~~~~~~~~~~ 99 (106)
T cd05811 80 VTWESDPNRSYTVPSGCGTT 99 (106)
T ss_pred EEEecCCCeEEECCCCCCcc
Confidence 78999999999988764433
No 41
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.56 E-value=7.7e-14 Score=130.73 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=82.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCC-CcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSAD-FFRADNPEGMEARNEVAALAMEDMISWMH 431 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~-f~~~~~e~~~~~~~~vA~~~L~dl~~~L~ 431 (687)
||+|+|+|||||||+|+.|++.++ ..+++.|+++..+.+...... +........++.+...+...+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------- 67 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKAL-------- 67 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHH--------
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHH--------
Confidence 799999999999999999998866 556788888876655322211 111111112222223333333
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccC
Q 005630 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQS 486 (687)
Q Consensus 432 ~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~ 486 (687)
..|..+|+|.+|..+..|+.+.++ .+.++++.+|++.|+ .+++.+|+..|....
T Consensus 68 ~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 68 RNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNREG 122 (143)
T ss_dssp HTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCCC
T ss_pred HcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCcc
Confidence 378999999999999999999988 778999999999885 677888888887643
No 42
>PLN02950 4-alpha-glucanotransferase
Probab=99.52 E-value=2.8e-14 Score=170.42 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=93.0
Q ss_pred CCCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005630 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (687)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~ 105 (687)
..+++.-|+|+|+||++..++.++|+||++.||+||+++|++|+.++++.|++++++++...+|||||++++.+ ..+.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~--g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAE--GLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCC--CceE
Confidence 45778899999999999999999999999999999999999999999999999999999888999999999965 3578
Q ss_pred eccCCCccccCCCCCCCceEEEEE
Q 005630 106 VEEGPNRLLTGGALQGDSRSALFR 129 (687)
Q Consensus 106 wE~g~NR~l~~~~~~~~~~~~~~~ 129 (687)
||.|+||.+..|.+.+++..+++.
T Consensus 226 WE~g~NR~~~~p~~~~~~~~~~~~ 249 (909)
T PLN02950 226 LELGVNRELSLDSSSGKPPSYIVA 249 (909)
T ss_pred EeeCCCceeecCcccCCceEEEec
Confidence 999999999999999877655543
No 43
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.52 E-value=5.7e-14 Score=124.61 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=71.3
Q ss_pred EEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCC
Q 005630 31 FYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGP 110 (687)
Q Consensus 31 ~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~g~ 110 (687)
+.|+|+++... ..++.++|+||+++||+|+ +|++|... .+.|++++++|... ++||||++++.+. .+.||.|+
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~--~~~~l~~~-~~~W~~~~~l~~~~-~ieyKy~~~~~~~--~v~WE~g~ 74 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWK--KKVPMNWT-ENGWVCDLELDGGE-LVEYKFVIVKRDG--SVIWEGGN 74 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCC--CCCccccC-CCCEEEEEEeCCCC-cEEEEEEEEcCCC--CEEEEeCC
Confidence 46888888755 6799999999999999999 56778776 57899999999874 8999999998653 56799999
Q ss_pred CccccCCCCCC
Q 005630 111 NRLLTGGALQG 121 (687)
Q Consensus 111 NR~l~~~~~~~ 121 (687)
||.+..|....
T Consensus 75 Nr~~~~~~~~~ 85 (92)
T cd05818 75 NRVLELPKEGN 85 (92)
T ss_pred CEEEEccCCCC
Confidence 99999886644
No 44
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.52 E-value=5.6e-14 Score=125.04 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=72.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCC
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~g~N 111 (687)
-|+|+|++|++.+++.++|+||++.||+|++ +++|...+.+.|..++++|... ++||||++++ +...+.||.|+|
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~~~-~ieYky~~~~--~~~~~~WE~~~n 76 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPVDT-HVEWKFVLVE--NGQVTRWEECSN 76 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecCCC-cEEEEEEEEc--CCCEEEeecCCC
Confidence 4899999999999999999999999999996 8999999999999999999976 7999999976 446778999999
Q ss_pred cccc
Q 005630 112 RLLT 115 (687)
Q Consensus 112 R~l~ 115 (687)
|.+.
T Consensus 77 r~~~ 80 (95)
T cd05813 77 RLLE 80 (95)
T ss_pred eEEE
Confidence 9988
No 45
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.8e-13 Score=130.12 Aligned_cols=109 Identities=25% Similarity=0.346 Sum_probs=97.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
.++.++|||+||+||||||||-+|.+.|...|.-++++++|.. ++|++.+.+|..+++.+..+++.++|+.
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNv---RhGLN~DL~F~a~dR~ENIRRigeVaKL------ 98 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNV---RHGLNKDLGFKAEDRNENIRRIGEVAKL------ 98 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccc---ccccccccCcchhhhhhhHHHHHHHHHH------
Confidence 5678999999999999999999999999999999999999776 7899999999999999999999999998
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeC
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICN 470 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~ 470 (687)
+++.|.+.|..-..+++..|+..+++.+.+ -|||++.+
T Consensus 99 --FADag~iciaSlISPYR~dRdacRel~~~~---~FiEvfmd 136 (207)
T KOG0635|consen 99 --FADAGVICIASLISPYRKDRDACRELLPEG---DFIEVFMD 136 (207)
T ss_pred --HhccceeeeehhcCchhccHHHHHHhccCC---CeEEEEec
Confidence 455999999999999999999999994433 26666555
No 46
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.45 E-value=3e-13 Score=155.41 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=116.1
Q ss_pred cccccCCCCCccchhhHHHHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhHHHhhCCC
Q 005630 320 DTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRLKHGVN 398 (687)
Q Consensus 320 ~~~~~~~~p~~~~~~a~a~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyRr~~~g~~ 398 (687)
+.......|++...+..+++...+..+...++.+|||+|+|||||||||++|+++|++ .+..+..++.|.+|+.+.
T Consensus 361 ~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--- 437 (568)
T PRK05537 361 RLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--- 437 (568)
T ss_pred HHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc---
Confidence 3356888899998888888988888888888999999999999999999999999997 777788888888876443
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHH
Q 005630 399 QSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 477 (687)
Q Consensus 399 ~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~r 477 (687)
....|.+.+++..++++..++..++. .|.+||+|++++.++.|+.++++ .+.+ .+++|.+.++ .+++.+
T Consensus 438 ge~~f~~~er~~~~~~l~~~a~~v~~--------~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~ 507 (568)
T PRK05537 438 SELGFSKEDRDLNILRIGFVASEITK--------NGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQ 507 (568)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh--------CCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHH
Confidence 34567666677777777667766555 89999999999999999999999 4434 3444444554 566666
Q ss_pred HH
Q 005630 478 NI 479 (687)
Q Consensus 478 rI 479 (687)
|+
T Consensus 508 R~ 509 (568)
T PRK05537 508 RD 509 (568)
T ss_pred hc
Confidence 65
No 47
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.45 E-value=2.6e-13 Score=124.45 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=72.5
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc-------CCCceEEEEecCCCC--CceeeEEEEecCCCCC
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE-------SASMWELSFVVPPNH--ETLDFKFLLKPKYGNG 102 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~-------~~~~W~~~l~~~~~~--~~leyKf~i~~~~~~~ 102 (687)
-|||.|.|--+++++.++|+||.|.||+||+++|++|..+ ..++|.++++++... .+|||||+.++ ..
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~--~~- 78 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE--AG- 78 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC--CC-
Confidence 4899999988899999999999999999999999999997 557899999999985 69999999876 22
Q ss_pred ceeec---cCCCccccCC
Q 005630 103 PCIVE---EGPNRLLTGG 117 (687)
Q Consensus 103 ~~~wE---~g~NR~l~~~ 117 (687)
.+.|| .++||.+.+.
T Consensus 79 ~v~WE~~~~~~nr~~~~~ 96 (112)
T cd05806 79 ALIWEGNGPHHDRCCVYD 96 (112)
T ss_pred eeEEecCCCCCCeEEecc
Confidence 67799 7799986544
No 48
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.44 E-value=2.7e-12 Score=135.69 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=99.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCC-cCCCCH-HHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNP-EGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f-~~~~~e-~~~~~~~~vA~~~L~dl~~ 428 (687)
+.+|+|+|+|||||||+|++|++++. ....++.|++|+.+.+......+ +....+ .......+.+..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 72 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAAL----- 72 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHH-----
Confidence 57999999999999999999999872 34566777778866543321111 111111 11122222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHH
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (687)
..|..+|+|+++..+..|+.+.++ .+.++.+.++.+.| +.+++.+|+..|.. . . .+++.++.+++|++
T Consensus 73 ---~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~-~-----~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 73 ---KSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE-R-----A-VPEDVLRSMFKQMK 141 (300)
T ss_pred ---HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc-C-----C-CCHHHHHHHHHHHH
Confidence 368899999999999999999888 67777777777667 57788888877632 1 1 45778888899999
Q ss_pred hhhhccccC
Q 005630 508 NYEKVYEPV 516 (687)
Q Consensus 508 ~y~~~yEPl 516 (687)
.|...-.|+
T Consensus 142 ~~~~~~~p~ 150 (300)
T PHA02530 142 EYRGLVWPV 150 (300)
T ss_pred HhcCCCCce
Confidence 886644443
No 49
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.43 E-value=1.4e-12 Score=125.14 Aligned_cols=113 Identities=22% Similarity=0.189 Sum_probs=86.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
+|+|+|+|||||||+|+.|++.+.+.+.....++.+.+|+.+.+ ...|.++.+.+.++.+...++. +.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~~~~~~~~~~~~~~~~~a~~--------l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLGFSREDREENIRRIAEVAKL--------LAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccCCCcchHHHHHHHHHHHHHH--------HHh
Confidence 58999999999999999999999888888888888888874432 2345555555555555544444 334
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~r 477 (687)
.|.+||+|+++..+..|..++++.+ +.++.++.+.|+.+++.+|
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R 113 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQR 113 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHh
Confidence 8999999999999999999998855 6788888888875544444
No 50
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.39 E-value=3e-12 Score=145.34 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=96.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
...|.||+|+|+|||||||+|+.+++.+++..++.|.+ . .+......|..+|.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-----g-------------------~~~~~~~~a~~~L~--- 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-----G-------------------STQNCLTACERALD--- 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-----H-------------------HHHHHHHHHHHHHh---
Confidence 34789999999999999999999998766554444333 1 12333345555555
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
.|..||+|+||.+++.|+.+.++ .++++++.++.+.++ .+++++|++.|.. .+.++..-++.++
T Consensus 419 -----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~--~~~s~~~vp~~v~------- 483 (526)
T TIGR01663 419 -----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL--SDSAHIKIKDMVF------- 483 (526)
T ss_pred -----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc--CCcccCCCCHHHH-------
Confidence 79999999999999999999999 788999999998886 6777777777754 2233331234443
Q ss_pred HhhhhccccCC--CC-CceEEeec
Q 005630 507 ANYEKVYEPVD--EG-SYIKMIDM 527 (687)
Q Consensus 507 ~~y~~~yEPl~--e~-~yik~in~ 527 (687)
..|.+.|||.+ |+ .-|..||+
T Consensus 484 ~~~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 484 NGMKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred HHHHhhCCCCCcccCceEEEEEeC
Confidence 44455566554 33 44555666
No 51
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.39 E-value=4.2e-13 Score=131.47 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=97.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
=|+|+|+||+|||||+++||+.|+...+++|.+.. ...| ..-..+|...++..++.++..+...+- .
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie-----~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~------~- 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIE-----KRTG-MSIAEIFEEEGEEGFRRLETEVLKELL------E- 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHH-----HHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHh------h-
Confidence 48999999999999999999999998888887743 3333 233568899999999999865554332 1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCCh-HHHHHHHHHHHHhhh
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYE 510 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~-e~a~~df~~Ri~~y~ 510 (687)
.+..||--+. ... ..+..+.+ .+.+ .++||+ .+.+++.+|+... ..+|.+.+. ++ +.+.+.|.+|.+.|+
T Consensus 71 ~~~~ViaTGG-G~v-~~~enr~~l~~~g-~vv~L~---~~~e~l~~Rl~~~-~~RPll~~~-~~~~~l~~L~~~R~~~Y~ 142 (172)
T COG0703 71 EDNAVIATGG-GAV-LSEENRNLLKKRG-IVVYLD---APFETLYERLQRD-RKRPLLQTE-DPREELEELLEERQPLYR 142 (172)
T ss_pred cCCeEEECCC-ccc-cCHHHHHHHHhCC-eEEEEe---CCHHHHHHHhccc-cCCCcccCC-ChHHHHHHHHHHHHHHHH
Confidence 2223332221 111 12333333 3333 678886 4789999999844 458999998 88 668899999999998
Q ss_pred hc
Q 005630 511 KV 512 (687)
Q Consensus 511 ~~ 512 (687)
+.
T Consensus 143 e~ 144 (172)
T COG0703 143 EV 144 (172)
T ss_pred Hh
Confidence 75
No 52
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.38 E-value=7.4e-13 Score=125.81 Aligned_cols=77 Identities=35% Similarity=0.463 Sum_probs=66.2
Q ss_pred cEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c-CCCcccc
Q 005630 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKIQW 634 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~-g~~v~~~ 634 (687)
+|||||||++.++......+ |.+||+.|++||++++++|... ..+++.|||||+.||+|||+++ . +.++...
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKEL--GIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVD 78 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeC
Confidence 48999999999987664444 8999999999999999998754 3579999999999999999999 2 5677888
Q ss_pred ccccc
Q 005630 635 RALDE 639 (687)
Q Consensus 635 ~~L~E 639 (687)
+.|+|
T Consensus 79 ~~L~e 83 (153)
T cd07067 79 PRLRE 83 (153)
T ss_pred ccchH
Confidence 88888
No 53
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.35 E-value=1.9e-12 Score=138.12 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=61.8
Q ss_pred ccEEEeccCCcccccCCCcCCCC---CCCHHHHHHHHHHHHHHHHHhc----cCCCCEEEecCcHHHHHhhhcc---c-C
Q 005630 560 RPILLTRHGESRDNVRGRIGGDT---ILSDAGEIYAKKLANFVEKRLK----SERAASIWTSTLQRTILTASPI---A-G 628 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~gD~---pLSe~G~~qA~~La~~L~~~l~----~~~~~~V~tSpl~Ra~qTA~~i---~-g 628 (687)
++||||||||+.++ + ..|. +||+.|++||++++++|.+... +.+++.|||||+.||+|||++| . +
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 88999999997554 2 2344 4999999999999998875421 1278999999999999999998 2 4
Q ss_pred CCccccccccc
Q 005630 629 FPKIQWRALDE 639 (687)
Q Consensus 629 ~~v~~~~~L~E 639 (687)
+++..++.|+|
T Consensus 179 ~~v~~d~~LrE 189 (299)
T PTZ00122 179 VRLIEDPNLAE 189 (299)
T ss_pred CCceeCccccc
Confidence 67888899999
No 54
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.33 E-value=1.3e-11 Score=121.89 Aligned_cols=117 Identities=25% Similarity=0.268 Sum_probs=87.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
..+.+|+|+|+|||||||+|+.|+..+...+..+..++.+.+|+.+. ....|..+.+...++.+..++...+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~----- 87 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN---KDLGFSEEDRKENIRRIGEVAKLFV----- 87 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc---cccCCCHHHHHHHHHHHHHHHHHHH-----
Confidence 46889999999999999999999999987777778888888887543 2344555555666666555555543
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~r 477 (687)
..|.+||+|++++.+..|+.++.+.+. .+++++.+.|+.+.+.+|
T Consensus 88 ---~~G~~VI~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 88 ---RNGIIVITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ---cCCCEEEEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHh
Confidence 489999999999999999999998432 255566667775544444
No 55
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.33 E-value=2.1e-11 Score=115.92 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=77.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhC--CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG--VNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g--~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
||+|+|+|||||||+|+.|++.+++..+ +.|++++.... ......+.....+.....+.+.+.. .+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i-----~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFI-----DGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLA-------KL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEE-----eCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHH-------HH
Confidence 5899999999999999999999765544 44444542100 0011122222233333333322222 22
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
...|..+|+|+++..+..|+.++.+. ++..+.++.+.|+ ++++++|+.+|..
T Consensus 69 ~~~~~~vVid~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (150)
T cd02021 69 ASAGEGVVVACSALKRIYRDILRGGA-ANPRVRFVHLDGP-REVLAERLAARKG 120 (150)
T ss_pred HhCCCCEEEEeccccHHHHHHHHhcC-CCCCEEEEEEECC-HHHHHHHHHhccc
Confidence 23688899999999999998888886 5677778888885 7788888888753
No 56
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.32 E-value=1.3e-11 Score=127.71 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=77.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHH-HHHHHHHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGME-ARNEVAALAMEDMISWMH 431 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~-~~~~vA~~~L~dl~~~L~ 431 (687)
||+|+|+|||||||+|++|+++|...++++.+++.|.+|+.... +....+...+ .....+.. +.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~~~~~~~~~i~~--------~l 65 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEFIRDSTLYLIKT--------AL 65 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHHHHHHHHHHHHH--------HH
Confidence 68999999999999999999999988888888888878764310 1111111111 11112222 22
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 005630 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (687)
Q Consensus 432 ~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI 479 (687)
..|..||+|++|.....|..+.++ ...++.+..|.+.|+.+.+++|+.
T Consensus 66 ~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~ 114 (249)
T TIGR03574 66 KNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI 114 (249)
T ss_pred hCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence 368899999999999988888877 566777777777787555555543
No 57
>PRK06762 hypothetical protein; Provisional
Probab=99.31 E-value=2.1e-11 Score=117.96 Aligned_cols=115 Identities=15% Similarity=0.038 Sum_probs=77.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
|.+|+|+|+|||||||+|++|+++++ ....+++.|.+|+.+.+.... .+......+.+.++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~~------~~~~~~~~~~~~~~~~-------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKDG------PGNLSIDLIEQLVRYG-------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccCC------CCCcCHHHHHHHHHHH--------
Confidence 67999999999999999999999973 356677888888754322110 1111222333333333
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+.|.+||+|+++.....|..++.+ ...+.++.++.+.++.+ +..+|+..|.
T Consensus 65 ~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e-~~~~R~~~R~ 117 (166)
T PRK06762 65 LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFE-ETLRRHSTRP 117 (166)
T ss_pred HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHH-HHHHHHhccc
Confidence 3378999999999888888888888 55566666666667644 4555554443
No 58
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.30 E-value=3.2e-11 Score=117.95 Aligned_cols=115 Identities=19% Similarity=0.174 Sum_probs=84.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
+.+.+|+|+|+|||||||+|+.|++.|...+.++.+++.|..|+.+. ....+..+++...++.+..++..+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~---~~~~~~~~~r~~~~~~~~~~a~~~~~---- 74 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS---KGLGFSKEDRDTNIRRIGFVANLLTR---- 74 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh---cCCCCChhhHHHHHHHHHHHHHHHHh----
Confidence 35679999999999999999999999988787888888888877543 22345555666667766666655333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~r 477 (687)
.|.+||+|++++.+..|+.++.+.. .+.++.+.|+.+++.+|
T Consensus 75 ----~g~~vi~~~~~~~~~~~~~l~~~~~---~~~~v~l~~~~e~~~~R 116 (175)
T PRK00889 75 ----HGVIVLVSAISPYRETREEVRANIG---NFLEVFVDAPLEVCEQR 116 (175)
T ss_pred ----CCCEEEEecCCCCHHHHHHHHhhcC---CeEEEEEcCCHHHHHHh
Confidence 7999999999988888887777642 34455556765544444
No 59
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.28 E-value=5.9e-12 Score=122.63 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=60.1
Q ss_pred CccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc
Q 005630 559 PRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i 626 (687)
+|+|||+|||++++...+.-..|.+||++|+++|+++|++|+++ ...+|.|+|||+.||+|||+.+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~--~~~~D~VL~Spa~Ra~QTae~v 66 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQ--GVEPDLVLVSPAVRARQTAEIV 66 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhc--CCCCCEEEeChhHHHHHHHHHH
Confidence 47899999999999876644559999999999999999999987 6789999999999999999988
No 60
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=144.28 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=94.5
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005630 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (687)
Q Consensus 346 ~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~d 425 (687)
+.+.+|.+|||+|+|||||||+|++|+++|.+.+.....++.|++|+.+. ....|.++++...++.+.++|...++
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~---~~~~~~~~~r~~~~~~l~~~a~~~~~- 530 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN---RDLGFSDADRVENIRRVAEVARLMAD- 530 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC---CCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 34557899999999999999999999999998888889999999988543 33456677778888888777777555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005630 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (687)
Q Consensus 426 l~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rr 478 (687)
.|.+||+|++++.+..|+.++++.+.. .+.++.+.|+ .+.+.+|
T Consensus 531 -------~G~~Vivda~~~~~~~R~~~r~l~~~~-~~~~v~L~~~-~e~~~~R 574 (632)
T PRK05506 531 -------AGLIVLVSFISPFREERELARALHGEG-EFVEVFVDTP-LEVCEAR 574 (632)
T ss_pred -------CCCEEEEECCCCCHHHHHHHHHhcccC-CeEEEEECCC-HHHHHhh
Confidence 899999999999999999999884322 4445555565 5555555
No 61
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.26 E-value=4.4e-11 Score=117.32 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=77.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC----CCC------cCC-CCHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----ADF------FRA-DNPEGMEARNEVAA 420 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~----~~f------~~~-~~e~~~~~~~~vA~ 420 (687)
.+|+|+|+|||||||+|+.|++.+.... ..++.|+|+..+...... ..+ .++ .....|..+...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPW---LHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCc---cccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHH
Confidence 4899999999999999999999875322 234556666543211110 001 111 12234555555555
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~-~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+++ .|..||+|+++. ....|+.++.+. +.++++|.+.|+. +++.+|+..|.
T Consensus 80 ~~l~--------~G~~VIvD~~~~~~~~~r~~~~~~~--~~~~~~v~l~~~~-~~l~~R~~~R~ 132 (175)
T cd00227 80 AMAR--------AGANVIADDVFLGRAALQDCWRSFV--GLDVLWVGVRCPG-EVAEGRETARG 132 (175)
T ss_pred HHHh--------CCCcEEEeeeccCCHHHHHHHHHhc--CCCEEEEEEECCH-HHHHHHHHhcC
Confidence 5544 899999999998 677777777663 3568899999985 56666666553
No 62
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.26 E-value=8.4e-11 Score=123.77 Aligned_cols=134 Identities=19% Similarity=0.289 Sum_probs=80.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHH-HHHHHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMISWMH 431 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~-~~vA~~~L~dl~~~L~ 431 (687)
||+|||+|||||||+|+.|+++|...+..+.+++.+..+ ..... |.+...++..+.. ...+... |.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~~-y~~~~~Ek~~R~~l~s~v~r~-------ls 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRND-YADSKKEKEARGSLKSAVERA-------LS 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTSS-S--GGGHHHHHHHHHHHHHHH-------HT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchhh-hhchhhhHHHHHHHHHHHHHh-------hc
Confidence 899999999999999999999999988888888765553 12222 5444455443321 1222222 22
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHH
Q 005630 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (687)
Q Consensus 432 ~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (687)
...+||+|+.|..+..|..+..+ ++.+..+..|.|.|+.+.++++|..+... ..| .++.++++..|++
T Consensus 70 -~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~--~~~-----~~e~i~~m~~RfE 138 (270)
T PF08433_consen 70 -KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP--ERY-----PEETIDDMIQRFE 138 (270)
T ss_dssp -T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----S------HHHHHHHHHH--
T ss_pred -cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC--CCC-----CHHHHHHHHHHhc
Confidence 46899999999999999999999 77888888888999988999998543321 112 3455555555544
No 63
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.26 E-value=1.2e-11 Score=120.31 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=54.4
Q ss_pred ccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc
Q 005630 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i 626 (687)
|+|||||||++.++.. ...|.|||++|++||+.++++|... +..++.|||||+.||+|||+++
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l 63 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQ--KVDIERVLVSPYLRAEQTLEVV 63 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHH
Confidence 5799999999998742 1227799999999999999998754 5678999999999999999998
No 64
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.26 E-value=9e-12 Score=120.25 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=55.3
Q ss_pred ccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc
Q 005630 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i 626 (687)
|+|||||||+++++.. ...|.+||++|++||+.++++|.+. +..++.|||||+.||+|||+.+
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l 63 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQ--GVEIERILVSPFVRAEQTAEIV 63 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHH
Confidence 4799999999998764 2338899999999999999998754 4678999999999999999998
No 65
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.25 E-value=6.8e-11 Score=118.42 Aligned_cols=119 Identities=25% Similarity=0.279 Sum_probs=91.8
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005630 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (687)
Q Consensus 346 ~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~d 425 (687)
+.+++|.+|+|+|+|||||||+|+.|++.|...+..+..++.|++|+.+.. ..+|..+++.+.++.+.++|..++.
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~- 94 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRKENIRRVGEVAKLMVD- 94 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHHHHHHHHHHHHHHHhh-
Confidence 445688999999999999999999999999877888888988888764432 3456666677777777777776555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005630 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (687)
Q Consensus 426 l~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rr 478 (687)
.|.+||.+..++.++.|+.++++ .+.+ +++|.+.|+ .+++.+|
T Consensus 95 -------~G~~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~-~e~~~~R 138 (198)
T PRK03846 95 -------AGLVVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTP-LAICEAR 138 (198)
T ss_pred -------CCCEEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCC-HHHHHhc
Confidence 79999999999999999999998 4444 444555676 4455555
No 66
>COG4639 Predicted kinase [General function prediction only]
Probab=99.24 E-value=7.7e-11 Score=113.13 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=85.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
+.|++|+|+|||||||+|+.. ....++++.++.|..+ |......-.....+...+.+.+.+...|+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n-------~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~------ 67 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN-------FLQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLR------ 67 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh-------CCCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHH------
Confidence 469999999999999999763 4577889999998844 32222222222233456666666666666
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rr 478 (687)
.|...|+||||..++.|+.+.++ ..+++..++|++..+..++..||
T Consensus 68 --~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN 114 (168)
T COG4639 68 --RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN 114 (168)
T ss_pred --cCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence 79999999999999999999999 88999999999998877777766
No 67
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.22 E-value=9.8e-11 Score=116.99 Aligned_cols=135 Identities=21% Similarity=0.141 Sum_probs=87.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
+|+++|+|||||||+|+.|++.|...++++..+ ..||++... ..++++-..+...+...+-+..++...+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l-~kdy~~~i~----~DEslpi~ke~yres~~ks~~rlldSal----- 72 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL-EKDYLRGIL----WDESLPILKEVYRESFLKSVERLLDSAL----- 72 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc-chhhhhhee----cccccchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 899999999999999999999999888777655 345755321 1122222222222222222222333222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
....||+|++|.....|.++... ++....+-.|.+.|+.+.++++|.. |. .| -+++.++.++.|.
T Consensus 73 kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~e-rg--ep------ip~Evl~qly~Rf 138 (261)
T COG4088 73 KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRE-RG--EP------IPEEVLRQLYDRF 138 (261)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhcc-CC--CC------CCHHHHHHHHHhh
Confidence 16799999999999988877776 6666677777788988888888832 21 12 3566665555554
No 68
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.19 E-value=2.7e-10 Score=109.94 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=70.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh-hHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd-yRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
|+|+|+|||||||+|+.|++.+++..++.|.+.... .++...+. .+.+......++.+.+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-------- 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGI----PLNDDDRWPWLQNLNDASTAAAA-------- 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCC----CCChhhHHHHHHHHHHHHHHHHh--------
Confidence 579999999999999999999875444444432111 12222221 22223333334444444433332
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.|..+|+|+++..+..|+.++ +.+..+.++.+.|+ .+++.+|++.|.
T Consensus 69 ~~~~~Vi~~t~~~~~~r~~~~---~~~~~~~~i~l~~~-~e~~~~R~~~R~ 115 (163)
T TIGR01313 69 KNKVGIITCSALKRHYRDILR---EAEPNLHFIYLSGD-KDVILERMKARK 115 (163)
T ss_pred cCCCEEEEecccHHHHHHHHH---hcCCCEEEEEEeCC-HHHHHHHHHhcc
Confidence 566679999998888777665 34555666666675 778888888774
No 69
>PRK06193 hypothetical protein; Provisional
Probab=99.17 E-value=9.4e-11 Score=118.64 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=58.7
Q ss_pred CCccEEEeccCCcccccCCCcCC-------CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG-------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA 627 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g-------D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~ 627 (687)
....|||||||++++|..+.+.+ |.+||++|++||+.++++|.+. +.+++.|||||+.||+|||+.+.
T Consensus 41 ~~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~--~~~~d~V~sSpl~Ra~qTA~il~ 115 (206)
T PRK06193 41 KGGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRAL--AIPVGKVISSPYCRAWETAQLAF 115 (206)
T ss_pred cCCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHh
Confidence 34789999999998887666554 3699999999999999998764 56899999999999999999884
No 70
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.17 E-value=4.9e-11 Score=112.27 Aligned_cols=64 Identities=36% Similarity=0.542 Sum_probs=56.5
Q ss_pred cEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc
Q 005630 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i 626 (687)
+|||+|||++.++..+.+.+ |.+||+.|++||+.+++.|.+. ..+++.|||||+.||+|||+++
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~~~v~sSp~~R~~~Ta~~~ 66 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRER--YIKFDRIYSSPLKRAIQTAEII 66 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHh--CCCCCEEEECChHHHHHHHHHH
Confidence 48999999999987765333 9999999999999999998765 3578999999999999999999
No 71
>PRK13948 shikimate kinase; Provisional
Probab=99.17 E-value=1.7e-10 Score=114.80 Aligned_cols=139 Identities=17% Similarity=0.110 Sum_probs=94.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAA-LAMEDMIS 428 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~-~~L~dl~~ 428 (687)
.+..|+|+|+|||||||+++.|++.|++..+++|.+ ++...|... .++|....+..++.++..+. .++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~-----ie~~~g~si-~~if~~~Ge~~fR~~E~~~l~~l~~---- 78 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY-----IERVTGKSI-PEIFRHLGEAYFRRCEAEVVRRLTR---- 78 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH-----HHHHHhCCH-HHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 567999999999999999999999998777666654 666665433 35677778888887775433 3222
Q ss_pred HHhcCCeEEEE--eCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 429 WMHEGGQVGIF--DATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 429 ~L~~~G~iVIl--DAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
.+..||. .++...++.|+.++ +.+ .++||. + +++.+.+|+.. ..+|...+....+.+.+.|.+|.
T Consensus 79 ----~~~~VIa~GgG~v~~~~n~~~l~---~~g-~vV~L~--~-~~e~l~~Rl~~--~~RPll~~~~~~~~l~~l~~~R~ 145 (182)
T PRK13948 79 ----LDYAVISLGGGTFMHEENRRKLL---SRG-PVVVLW--A-SPETIYERTRP--GDRPLLQVEDPLGRIRTLLNERE 145 (182)
T ss_pred ----cCCeEEECCCcEEcCHHHHHHHH---cCC-eEEEEE--C-CHHHHHHHhcC--CCCCCCCCCChHHHHHHHHHHHH
Confidence 3444444 24555666666544 333 567776 4 57888889943 34788765412456667788888
Q ss_pred Hhhhh
Q 005630 507 ANYEK 511 (687)
Q Consensus 507 ~~y~~ 511 (687)
+.|++
T Consensus 146 ~~Y~~ 150 (182)
T PRK13948 146 PVYRQ 150 (182)
T ss_pred HHHHh
Confidence 88865
No 72
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.17 E-value=3.4e-10 Score=110.37 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=90.8
Q ss_pred EccCCCChHHHHHHHHHHHhhcCcCceEEeh-hhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 005630 357 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 435 (687)
Q Consensus 357 vGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~ 435 (687)
+|+|||||||+|+.|+..++...++.|++.. ..+|+...|. .+.+.........+...+... +..+|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAM-------QRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCC----CCChhhHHHHHHHHHHHHHHH-------HHcCCc
Confidence 5999999999999999999877777766532 1123322222 122222233334444444332 223466
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhhhcccc
Q 005630 436 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 515 (687)
Q Consensus 436 iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~yEP 515 (687)
.||+ +++..+..|+.+++ .++++.||.|.|+ ++++++|++.|.. ++ + +++.+ ..|...+||
T Consensus 70 ~viv-~s~~~~~~r~~~~~---~~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--a-~~~vl--------~~Q~~~~ep 130 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE---GNPNLSFIYLKGD-FDVIESRLKARKG---HF--F-KTQML--------VTQFETLQE 130 (163)
T ss_pred eEEE-EecchHHHHHHHHc---cCCCEEEEEEECC-HHHHHHHHHhccC---CC--C-CHHHH--------HHHHHHcCC
Confidence 6666 89998888877665 5677888888885 7899999998864 34 3 56665 455667888
Q ss_pred CCCC-CceEEeec
Q 005630 516 VDEG-SYIKMIDM 527 (687)
Q Consensus 516 l~e~-~yik~in~ 527 (687)
+++. ..+.+||.
T Consensus 131 ~~~~e~~~~~id~ 143 (163)
T PRK11545 131 PGADETDVLVVDI 143 (163)
T ss_pred CCCCCCCEEEEeC
Confidence 8654 55666776
No 73
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.16 E-value=4.6e-11 Score=120.16 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=64.2
Q ss_pred CCccEEEeccCCcccccCCC-cCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc-cCCCccccc
Q 005630 558 TPRPILLTRHGESRDNVRGR-IGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWR 635 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~-~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i-~g~~v~~~~ 635 (687)
..++|||+|||++.+...+. ..++.|||++|++||++++++|.+. ...+.|||||+.||+|||+.+ .+.++...+
T Consensus 53 ~~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~---~~~d~I~sSpa~Ra~qTAe~ia~~~~v~~~~ 129 (201)
T PRK15416 53 QHPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSAD---IPDYDLYSSNTVRTIQSATWFSAGKKLTVDK 129 (201)
T ss_pred CCCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEECCCHHHHHHHHHHhcCCCcEecH
Confidence 44779999999983222121 1123699999999999999988643 233799999999999999999 356677778
Q ss_pred cccccccccc
Q 005630 636 ALDEINAGVC 645 (687)
Q Consensus 636 ~L~Ei~~G~~ 645 (687)
.|.|.+.+.+
T Consensus 130 ~Lye~~~~~~ 139 (201)
T PRK15416 130 RLSDCGNGIY 139 (201)
T ss_pred HHhhcCchhH
Confidence 8888876543
No 74
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.15 E-value=2.2e-10 Score=108.66 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=83.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~~ 433 (687)
|+|+|+|||||||+|+.|+++|++..++.+.+ .+...+... ..++...++..++.++..+. ..+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~-----~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~-------~~~~~~ 68 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL-----IEQRAGMSI-PEIFAEEGEEGFRELEREVL-------LLLLTK 68 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHH-----HHHHcCCCH-HHHHHHHCHHHHHHHHHHHH-------HHHhcc
Confidence 78999999999999999999998776555544 554444321 23444444444444433211 113334
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhhhc
Q 005630 434 GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKV 512 (687)
Q Consensus 434 G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~ 512 (687)
+..||..... ....... +.....+..++||+ | +++++.+|+..|. .+|.++.. +.+...+.|.+|.+.|++.
T Consensus 69 ~~~vi~~g~~-~i~~~~~-~~~~~~~~~~i~l~--~-~~e~~~~R~~~r~-~r~~~~~~-~~~~~~~~~~~r~~~Y~~~ 140 (154)
T cd00464 69 ENAVIATGGG-AVLREEN-RRLLLENGIVVWLD--A-SPEELLERLARDK-TRPLLQDE-DPERLRELLEEREPLYREV 140 (154)
T ss_pred CCcEEECCCC-ccCcHHH-HHHHHcCCeEEEEe--C-CHHHHHHHhccCC-CCCCCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 5555543322 1111111 22322244566765 4 5788888998765 47887766 5667778888888888765
No 75
>PRK00625 shikimate kinase; Provisional
Probab=99.10 E-value=3.8e-10 Score=111.37 Aligned_cols=137 Identities=14% Similarity=0.101 Sum_probs=84.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCC---CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---NQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~---~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
.|+|+|+|||||||+|+.|+++|++..+++|.+ -+...+. .....+|...+++.++..+..+...+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~-----I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~----- 71 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDL-----IVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLP----- 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHH-----HHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhc-----
Confidence 589999999999999999999988766555543 3333332 123456677788888877765444322
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhh
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y 509 (687)
....||.++ .......+.+..+... ..++|++ .+.+++.+|+..|.. .++.. ..+...+.|.+|.+.|
T Consensus 72 ---~~~~VIs~G-Gg~~~~~e~~~~l~~~-~~Vv~L~---~~~e~l~~Rl~~R~~-~~~~~---~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 72 ---VIPSIVALG-GGTLMIEPSYAHIRNR-GLLVLLS---LPIATIYQRLQKRGL-PERLK---HAPSLEEILSQRIDRM 139 (173)
T ss_pred ---cCCeEEECC-CCccCCHHHHHHHhcC-CEEEEEE---CCHHHHHHHHhcCCC-CcccC---cHHHHHHHHHHHHHHH
Confidence 233444332 2222222333334443 3477776 357888999976532 12222 3466777889999999
Q ss_pred hh
Q 005630 510 EK 511 (687)
Q Consensus 510 ~~ 511 (687)
++
T Consensus 140 ~~ 141 (173)
T PRK00625 140 RS 141 (173)
T ss_pred HH
Confidence 76
No 76
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.10 E-value=8.2e-10 Score=108.09 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=75.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
.|.+|+|+|+|||||||+|+.|+++|...+..+..++.+.+|+... ..+|......+...+...++..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~----~~~~~~~~~~~~~~~~~~l~~~-------- 73 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG----HYGYDKQSRIEMALKRAKLAKF-------- 73 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHH--------
Confidence 5789999999999999999999999987777778888888887431 1223222222222222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 480 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~ 480 (687)
+...|.+||+|+++..++.++.++.+.. .+.++| +.|+ ++++.+|+.
T Consensus 74 l~~~g~~VI~~~~~~~~~~~~~~~~~~~-~~~~v~--l~~~-~e~~~~R~~ 120 (176)
T PRK05541 74 LADQGMIVIVTTISMFDEIYAYNRKHLP-NYFEVY--LKCD-MEELIRRDQ 120 (176)
T ss_pred HHhCCCEEEEEeCCcHHHHHHHHHhhcC-CeEEEE--EeCC-HHHHHHhch
Confidence 3347999999999987777777776632 222333 3454 566666654
No 77
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.08 E-value=2.9e-09 Score=107.27 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=80.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCC------------CCcCCCCH---HHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA------------DFFRADNP---EGMEA 414 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~------------~f~~~~~e---~~~~~ 414 (687)
.+.+|+++|+||+||||+|+.|+++++. . .++..|-.|+.+.+..... .|.++..+ ..|..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~---~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI---D-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC---e-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 4679999999999999999999998643 2 2444444577554322111 12222221 11222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 415 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 415 ~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
..+.....+..+...+..+|..+|+|+++..+..++.... .+ +.++.+.+++++++++|+..|..
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~---~~--v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRT---NN--IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHh---cC--eEEEEEEeCCHHHHHHHHHHHhh
Confidence 2233334455555555558999999999999988754332 23 34555667789999999998864
No 78
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.08 E-value=7.3e-10 Score=119.98 Aligned_cols=128 Identities=19% Similarity=0.169 Sum_probs=81.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhhHH-----HhhCCCCCCCCcCCCCHHHHHHHHHHHH------
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKHGVNQSADFFRADNPEGMEARNEVAA------ 420 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdyRr-----~~~g~~~~~~f~~~~~e~~~~~~~~vA~------ 420 (687)
+++|+|+||+||||+++.|+..|. ..|+++.+++.||+-. ...|... ...|+..++...+.++..+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~-~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREI-PSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCc-HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999997 5899999999988731 1111111 11222222222222222110
Q ss_pred ----------HHHHHHHHHHhc------------------------CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEE
Q 005630 421 ----------LAMEDMISWMHE------------------------GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFL 465 (687)
Q Consensus 421 ----------~~L~dl~~~L~~------------------------~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfI 465 (687)
.+..+.+.+|.+ .+..+|+|++|..+..|..+..+ ...+..+..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 111111123332 34579999999999999999999 7778888888
Q ss_pred EEEeCCHHHHHHHHHhh
Q 005630 466 ETICNDRDIIERNIRLK 482 (687)
Q Consensus 466 E~~c~d~eii~rrI~~r 482 (687)
.+.|+.+.+++|| .+|
T Consensus 160 ~ld~ple~~l~RN-~~R 175 (340)
T TIGR03575 160 FLDCPVESCLLRN-KQR 175 (340)
T ss_pred EEeCCHHHHHHHH-hcC
Confidence 8888765555554 444
No 79
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=2.1e-10 Score=114.40 Aligned_cols=132 Identities=20% Similarity=0.207 Sum_probs=89.0
Q ss_pred cccCCCCccEEEeccCCcccccCCCcC------C---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhh
Q 005630 553 VNTHLTPRPILLTRHGESRDNVRGRIG------G---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTA 623 (687)
Q Consensus 553 mN~~~~~~~I~LVRHGeS~~n~~~~~~------g---D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA 623 (687)
+..|. -++||||||||..+|+.+.-. . |+-||+.|++|+.++++.+...--...++.|++||++||.||+
T Consensus 9 ~t~~r-~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~ 87 (248)
T KOG4754|consen 9 YTKNR-CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTM 87 (248)
T ss_pred cccCc-ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHH
Confidence 34454 588999999999999876411 1 8999999999999999877543123459999999999999999
Q ss_pred hccc----------CCCccccccc----cc-ccccccC-CCCHHHHHHhCHHH-HHHHHcC-CCCCCCCCCCCHHHHHHh
Q 005630 624 SPIA----------GFPKIQWRAL----DE-INAGVCD-GMTYEEIKKNMPEE-YEARKKD-KLRYRYPRGESYLDVIQR 685 (687)
Q Consensus 624 ~~i~----------g~~v~~~~~L----~E-i~~G~~E-G~t~~ei~~~~P~e-~~~~~~d-~~~~r~PgGES~~dl~~R 685 (687)
...+ ..++.+.+.+ +| +.--.|+ +.+..+.++.||.. |..-..+ ..-+++.-.|++.+.+.|
T Consensus 88 v~~f~~~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r 167 (248)
T KOG4754|consen 88 VIAFGGYLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAAR 167 (248)
T ss_pred HHHhcceeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHh
Confidence 9762 1345555666 77 4444566 45678888888742 2221111 011222233677776666
No 80
>PLN02950 4-alpha-glucanotransferase
Probab=99.06 E-value=4.4e-10 Score=134.94 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=74.4
Q ss_pred EEEEEEecccC-CCcEEEEecCCCccCCCCccccccccccCCC---ceEEEEecCCCCCceeeEEEEecCCCCCceeecc
Q 005630 33 VSLKMVNIKLK-GDLIPHVYGSVPLVGSWDSSKALAMGRESAS---MWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEE 108 (687)
Q Consensus 33 v~lkv~aP~l~-~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~---~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~wE~ 108 (687)
|+|+.++|... .++.++|+||.+.||+|+++||++|+.++.+ .|+++++++. ..++||||++++.+ ...+.||.
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~-~~~ieYKYv~v~~~-g~vi~WE~ 86 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPE-GFSCEYSYYVVDDN-KNVLRWEA 86 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecC-CCeEEEEEEEEeCC-Cceeeeec
Confidence 66777788776 6999999999999999999999999877544 8999999998 56799999999865 56688999
Q ss_pred CCCccccCCCCC
Q 005630 109 GPNRLLTGGALQ 120 (687)
Q Consensus 109 g~NR~l~~~~~~ 120 (687)
|+||.+..|...
T Consensus 87 g~NR~l~lp~~~ 98 (909)
T PLN02950 87 GKKRKLVLPEGL 98 (909)
T ss_pred CCCeeEECCccc
Confidence 999999998654
No 81
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=3.7e-10 Score=119.82 Aligned_cols=110 Identities=26% Similarity=0.347 Sum_probs=97.6
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
+-+.+.||++||+|+||||++-+|.++|...|+.++.+++|.+ ++|++...+|+++++++.++++.++|+.
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdni---rhgl~knlgfs~edreenirriaevakl------ 117 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNI---RHGLNKNLGFSPEDREENIRRIAEVAKL------ 117 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchh---hhhhhhccCCCchhHHHHHHHHHHHHHH------
Confidence 5678999999999999999999999999999999999999777 5788999999999999999999999998
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeC
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICN 470 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~ 470 (687)
++++|.++|...+.+..+.|..++++ ...+.+ |+|+.++
T Consensus 118 --fadaglvcitsfispf~~dr~~arkihe~~~l~--f~ev~v~ 157 (627)
T KOG4238|consen 118 --FADAGLVCITSFISPFAKDRENARKIHESAGLP--FFEVFVD 157 (627)
T ss_pred --HhcCCceeeehhcChhhhhhhhhhhhhcccCCc--eEEEEec
Confidence 45599999999999999999999999 444544 6666655
No 82
>PRK14532 adenylate kinase; Provisional
Probab=99.02 E-value=7.1e-10 Score=109.55 Aligned_cols=141 Identities=22% Similarity=0.300 Sum_probs=81.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC-----CCCcCC---CCHHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-----ADFFRA---DNPEGMEARNEVAALAM 423 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~-----~~f~~~---~~e~~~~~~~~vA~~~L 423 (687)
-|+|+|.|||||||+|+.|++++++..+++ |+. |+... .... ..++.. ... ++...++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~-----~d~lr~~~~-~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~ 68 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST-----GDMLRAAIA-SGSELGQRVKGIMDRGELVSD-------EIVIALI 68 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC-----cHHHHHHHH-cCCHHHHHHHHHHHCCCccCH-------HHHHHHH
Confidence 488999999999999999999987666555 333 44221 0000 000000 011 1111222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhc--cCCCCCCCCChHHHH
Q 005630 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEAGL 499 (687)
Q Consensus 424 ~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~--~~pd~s~~~d~e~a~ 499 (687)
.+...- ...|..+|+|+...+.++++.+.++ ...+..+ +.|.+.|+ ++++.+|+..|.. .+++ ...
T Consensus 69 ~~~~~~-~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~d--------d~~ 138 (188)
T PRK14532 69 EERLPE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPD--------DNP 138 (188)
T ss_pred HHHHhC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCC--------CCH
Confidence 211111 1246788999999999999998876 4555443 45556675 6777788877642 2222 223
Q ss_pred HHHHHHHHhhhhccccC
Q 005630 500 QDFKNRLANYEKVYEPV 516 (687)
Q Consensus 500 ~df~~Ri~~y~~~yEPl 516 (687)
+.|.+|+..|.+...|+
T Consensus 139 ~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 139 EVFVTRLDAYNAQTAPL 155 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677787776554443
No 83
>PRK13946 shikimate kinase; Provisional
Probab=99.01 E-value=2.2e-09 Score=106.37 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=85.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
.+..|+|+|+|||||||+|+.|+++|++..+++|.+ .+...+... ..++...++..++.++.. ++.-
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~-----~~~~~g~~~-~e~~~~~ge~~~~~~e~~-------~l~~ 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE-----IERAARMTI-AEIFAAYGEPEFRDLERR-------VIAR 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH-----HHHHhCCCH-HHHHHHHCHHHHHHHHHH-------HHHH
Confidence 456899999999999999999999998887777754 444444322 234445555555444321 1112
Q ss_pred HhcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCCh-HHHHHHHHHHH
Q 005630 430 MHEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRL 506 (687)
Q Consensus 430 L~~~G~iVIlDA--tn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~-e~a~~df~~Ri 506 (687)
+...+..||... ++..++.|+.++. .+ -++||+ + +.+++.+|+..+.. +|..++. ++ +...+.+.+|.
T Consensus 76 l~~~~~~Vi~~ggg~~~~~~~r~~l~~---~~-~~v~L~--a-~~e~~~~Rl~~r~~-rp~~~~~-~~~~~i~~~~~~R~ 146 (184)
T PRK13946 76 LLKGGPLVLATGGGAFMNEETRAAIAE---KG-ISVWLK--A-DLDVLWERVSRRDT-RPLLRTA-DPKETLARLMEERY 146 (184)
T ss_pred HHhcCCeEEECCCCCcCCHHHHHHHHc---CC-EEEEEE--C-CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHHH
Confidence 333556666653 4566666766653 33 345554 4 57888888987643 5655543 33 33445566666
Q ss_pred Hhhh
Q 005630 507 ANYE 510 (687)
Q Consensus 507 ~~y~ 510 (687)
+.|.
T Consensus 147 ~~y~ 150 (184)
T PRK13946 147 PVYA 150 (184)
T ss_pred HHHH
Confidence 6654
No 84
>PRK13949 shikimate kinase; Provisional
Probab=98.98 E-value=2e-09 Score=105.76 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=83.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
-|+++|+|||||||+|+.|++.|++..+++|.+.. ...+. ....+|....+..++.++..+...+ ..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~-----~~~~~-~~~~~~~~~g~~~fr~~e~~~l~~l-------~~ 69 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE-----NRFHK-TVGDIFAERGEAVFRELERNMLHEV-------AE 69 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH-----HHHCc-cHHHHHHHhCHHHHHHHHHHHHHHH-------Hh
Confidence 38999999999999999999999888777775422 12221 1133455556666766654433322 22
Q ss_pred CCeEEEEeCCCC--CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHH----HHHHHHHHH
Q 005630 433 GGQVGIFDATNS--SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA----GLQDFKNRL 506 (687)
Q Consensus 433 ~G~iVIlDAtn~--~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~----a~~df~~Ri 506 (687)
....||.++... ..+.++.+ .+.+ .++||. .+.+.+.+|++.+...+|...+. ..+. ..+.|.+|.
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l---~~~~-~vi~L~---~~~~~~~~Ri~~~~~~RP~~~~~-~~~~~~~~i~~l~~~R~ 141 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELM---NASG-TTVYLK---VSPEVLFVRLRLAKQQRPLLKGK-SDEELLDFIIEALEKRA 141 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHH---HhCC-eEEEEE---CCHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHHHHHHHHH
Confidence 344555443221 23333333 4444 356776 36788999998655557887655 4333 335677777
Q ss_pred Hhhhh
Q 005630 507 ANYEK 511 (687)
Q Consensus 507 ~~y~~ 511 (687)
+.|++
T Consensus 142 ~~Y~~ 146 (169)
T PRK13949 142 PFYRQ 146 (169)
T ss_pred HHHHh
Confidence 77765
No 85
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.98 E-value=8.7e-10 Score=108.10 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=86.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCc-eEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~t-dv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~L~ 424 (687)
+|+++|.|||||||+|++|+++++...+++ +++ |+.... ... . .......+ .+++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~l-----r~~~~~-~~~--~----~~~~~~~~~~g~~~~~~~~~~ll~ 68 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLL-----RAEIKS-GSE--N----GELIESMIKNGKIVPSEVTVKLLK 68 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHH-----HHHHhc-CCh--H----HHHHHHHHHCCCcCCHHHHHHHHH
Confidence 589999999999999999999987655443 233 553321 000 0 00000000 011111221
Q ss_pred HHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHc--CCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHH
Q 005630 425 DMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (687)
Q Consensus 425 dl~~~L~~-~G~iVIlDAtn~~~e~R~~l~el~~--~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~d 501 (687)
..+.. .+..+|+|+...+.++++.+.++.. .... ++|.+.|+ ++++.+|+..|... .+. .+...+.
T Consensus 69 ---~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d-~~i~l~~~-~~~~~~Rl~~R~~~----~~r--~dd~~e~ 137 (183)
T TIGR01359 69 ---NAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFK-FVLFFDCP-EEVMIKRLLKRGQS----SGR--VDDNIES 137 (183)
T ss_pred ---HHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCC-EEEEEECC-HHHHHHHHhcCCcc----CCC--CCCCHHH
Confidence 12222 2678999999999988888887732 2232 24555675 67777788766431 111 1223455
Q ss_pred HHHHHHhhhhccccCCC----CCceEEeec
Q 005630 502 FKNRLANYEKVYEPVDE----GSYIKMIDM 527 (687)
Q Consensus 502 f~~Ri~~y~~~yEPl~e----~~yik~in~ 527 (687)
+.+|+..|.+...|+-+ ..++..||.
T Consensus 138 ~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~ 167 (183)
T TIGR01359 138 IKKRFRTYNEQTLPVIEHYENKGKVKEINA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 77888888777666532 235566665
No 86
>PRK14531 adenylate kinase; Provisional
Probab=98.94 E-value=1.2e-09 Score=108.15 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCc-eEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAM 423 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~t-dv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~L 423 (687)
.-|+++|.|||||||+|+.|+++++...+++ +++ |+...... .+ .......+ .++...++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~l-----r~~~~~~~---~~----~~~~~~~~~~G~~v~d~l~~~~~ 70 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLL-----RSEVAAGS---AL----GQEAEAVMNRGELVSDALVLAIV 70 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHH-----HHHHhcCC---HH----HHHHHHHHHcCCCCCHHHHHHHH
Confidence 3589999999999999999999987766655 344 55332110 00 00000000 01111111
Q ss_pred HHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 424 EDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 424 ~dl~~~L~~-~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
. +.|.. .+..+|+|+...+..+++.+.++ .+.+..+ .++.+.|+ ++++.+|+..|.+ +| |.+ +
T Consensus 71 ~---~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r--~d-----D~~---e 136 (183)
T PRK14531 71 E---SQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGR--AD-----DNE---A 136 (183)
T ss_pred H---HHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCC--CC-----CCH---H
Confidence 1 12222 34557889999999988888776 4444332 24555664 7888888887743 11 222 3
Q ss_pred HHHHHHHhhhhccccCC
Q 005630 501 DFKNRLANYEKVYEPVD 517 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl~ 517 (687)
.+.+|+..|++..+|+-
T Consensus 137 ~i~~Rl~~y~~~~~pv~ 153 (183)
T PRK14531 137 VIRNRLEVYREKTAPLI 153 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788998888777753
No 87
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.93 E-value=3.4e-09 Score=121.75 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=99.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
+...|+|+|+|||||||+++.|++.|++..+++|.+ -....|. .-.++|.+.+++.|+.++..+...+.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~-----ie~~~g~-si~eif~~~Ge~~FR~~E~~~l~~~~----- 73 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE-----IEREIGM-SIPSYFEEYGEPAFREVEADVVADML----- 73 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH-----HHHHHCc-CHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455799999999999999999999999988777654 3333332 22467888899999888765544221
Q ss_pred HhcCCeEEEEeC---CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 430 MHEGGQVGIFDA---TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 430 L~~~G~iVIlDA---tn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
. ....|| .. +-..++.|+.+.++.+.+..++||. .+.+.+.+|+..+ ..+|.+.+. ..+.+.+.|.+|.
T Consensus 74 -~-~~~~VI-s~GGG~v~~~~n~~~L~~~~~~~g~vv~L~---~~~~~l~~Rl~~~-~~RPll~~~-~~~~~~~l~~~R~ 145 (542)
T PRK14021 74 -E-DFDGIF-SLGGGAPMTPSTQHALASYIAHGGRVVYLD---ADPKEAMERANRG-GGRPMLNGD-ANKRWKKLFKQRD 145 (542)
T ss_pred -h-cCCeEE-ECCCchhCCHHHHHHHHHHHhcCCEEEEEE---CCHHHHHHHHhCC-CCCCCCCCC-cHHHHHHHHHHHH
Confidence 1 222333 22 2334566777766633334677886 3678888888754 348888664 4677788889999
Q ss_pred Hhhhhc
Q 005630 507 ANYEKV 512 (687)
Q Consensus 507 ~~y~~~ 512 (687)
+.|++.
T Consensus 146 ~~Y~~~ 151 (542)
T PRK14021 146 PVFRQV 151 (542)
T ss_pred HHHHhh
Confidence 999873
No 88
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.93 E-value=2e-08 Score=112.17 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=100.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCC--------CC--------------cCC
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA--------DF--------------FRA 406 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~--------~f--------------~~~ 406 (687)
.+|.+|+++|.||+||||+|.+|+.++++.. +++.|.+|+.+.+.-... .| .+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~----ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR----IVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE----EeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 3699999999999999999999999987642 445555587554421110 00 001
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 407 DN---PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 407 ~~---e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.. -++|+...+.+...++.++......|.++|+|++++.+..+. .....+..++.++|+|+|++..++|+..|.
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~---~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra 405 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR---HPYQAGALVVPMLVTLPDEALHRRRFELRD 405 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH---HHHhcCCceEEEEEEECCHHHHHHHHHHHh
Confidence 11 233444445555557777666666799999999999998765 223456778889999999999999999887
Q ss_pred ccCCCCCCCCChHHHHHHHHH--HHHhh
Q 005630 484 QQSPDYAEEPDFEAGLQDFKN--RLANY 509 (687)
Q Consensus 484 ~~~pd~s~~~d~e~a~~df~~--Ri~~y 509 (687)
.... .+- ..+.+++.|.+ .|+.|
T Consensus 406 ~~~~--~~r-~~~ky~~~f~~IR~IQdy 430 (475)
T PRK12337 406 RETG--ASR-PRERYLRHFEEIRLIQDH 430 (475)
T ss_pred hhcc--CCC-chhHHHHhHHHHHHHHHH
Confidence 6321 111 23455555543 34444
No 89
>PRK14527 adenylate kinase; Provisional
Probab=98.92 E-value=4.4e-09 Score=104.63 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=89.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHH---HHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN---EVAALAMEDM 426 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~---~vA~~~L~dl 426 (687)
++.+|+++|.|||||||+|+.|+++++...++++-+ +|+.... ... + .......+. .+-...+..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~----~r~~~~~-~~~--~----~~~~~~~~~~g~~~p~~~~~~l 73 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI----LRDHVAR-GTE--L----GQRAKPIMEAGDLVPDELILAL 73 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHH----HHHHHhc-CcH--H----HHHHHHHHHcCCCCcHHHHHHH
Confidence 578999999999999999999999988777665322 1332211 000 0 000000000 0000011111
Q ss_pred -HHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEE-EEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHH
Q 005630 427 -ISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKII-FLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (687)
Q Consensus 427 -~~~L~~-~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vv-fIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df 502 (687)
.+.+.. .+..+|+|+...+..+++.+..+ ...+..+. ++.+.|+ ++++.+|+..|..... -. +.-.+-+
T Consensus 74 ~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~-r~-----dd~~~~~ 146 (191)
T PRK14527 74 IRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEG-RS-----DDNEETV 146 (191)
T ss_pred HHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCC-CC-----CCCHHHH
Confidence 122222 24569999977778888888776 44454443 3555675 6778888877753111 11 1123557
Q ss_pred HHHHHhhhhccccCC----CCCceEEeec
Q 005630 503 KNRLANYEKVYEPVD----EGSYIKMIDM 527 (687)
Q Consensus 503 ~~Ri~~y~~~yEPl~----e~~yik~in~ 527 (687)
.+|++.|.+..+|+- +..-+..||.
T Consensus 147 ~~R~~~y~~~~~~v~~~y~~~~~~~~id~ 175 (191)
T PRK14527 147 RRRQQVYREQTQPLVDYYEARGHLKRVDG 175 (191)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 789999988777763 2233455554
No 90
>PRK13947 shikimate kinase; Provisional
Probab=98.91 E-value=7.2e-09 Score=100.50 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=79.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
-|+++|+|||||||+|+.|++.|++..+++|.+ .+...|... ..++...++..++..+..+... +..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~-----~~~~~g~~~-~~~~~~~ge~~~~~~e~~~~~~-------l~~ 69 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE-----IEKMTGMTV-AEIFEKDGEVRFRSEEKLLVKK-------LAR 69 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh-----hhhhcCCcH-HHHHHHhChHHHHHHHHHHHHH-------Hhh
Confidence 389999999999999999999998877666654 544443322 2345556666666555433222 222
Q ss_pred CCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005630 433 GGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (687)
Q Consensus 433 ~G~iVIlDAt--n~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (687)
.+..||.... -...+.+ ..+.+.+ .++||. + +++.+.+|+..+. .+|........+...+.+.+|.+.|+
T Consensus 70 ~~~~vi~~g~g~vl~~~~~---~~l~~~~-~vv~L~--~-~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~~~y~ 141 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENV---VQLRKNG-VVICLK--A-RPEVILRRVGKKK-SRPLLMVGDPEERIKELLKEREPFYD 141 (171)
T ss_pred cCCeEEECCCCCcCCHHHH---HHHHhCC-EEEEEE--C-CHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 3444442221 1223332 3334444 355664 4 6888889998664 35655433023444556666766664
No 91
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.88 E-value=3.1e-08 Score=97.96 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=87.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh-hhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g-dyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
-+|+++|.+||||||+++.|+..+....++.+.+... ..|+...|. .+.+.........+..++...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~----~~~~~~~~~~~~~~~~~~~~~~------- 72 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGI----PLTDEDRLPWLERLNDASYSLY------- 72 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCC----CCCcccchHHHHHHHHHHHHHH-------
Confidence 4789999999999999999999987654444443221 134433332 2222222222333333332211
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (687)
..+...+|+ +++..+..|+.+++. +.++.||.|.|+ .+++.+|+.+|.. ++ + +++.+ ..|.
T Consensus 73 ~~~~~g~iv-~s~~~~~~R~~~r~~---~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--~-~~~vl--------~~Q~ 133 (176)
T PRK09825 73 KKNETGFIV-CSSLKKQYRDILRKS---SPNVHFLWLDGD-YETILARMQRRAG---HF--M-PPDLL--------QSQF 133 (176)
T ss_pred hcCCCEEEE-EEecCHHHHHHHHhh---CCCEEEEEEeCC-HHHHHHHHhcccC---CC--C-CHHHH--------HHHH
Confidence 212233344 888888888877544 556788888885 7888999988863 22 3 55555 5566
Q ss_pred hccccCCCC-CceEEeec
Q 005630 511 KVYEPVDEG-SYIKMIDM 527 (687)
Q Consensus 511 ~~yEPl~e~-~yik~in~ 527 (687)
+.|||.+.+ .-+..+|.
T Consensus 134 ~~~e~~~~~e~~~~~~d~ 151 (176)
T PRK09825 134 DALERPCADEHDIARIDV 151 (176)
T ss_pred HHcCCCCCCcCCeEEEEC
Confidence 667776533 22445565
No 92
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.87 E-value=1.7e-08 Score=99.25 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=83.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
+..|+++|+||+||||+|+.|++.+++..+++|. .++...|.. ...++...++..|+.++.. ++++ +
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~-----~i~~~~g~~-i~~~~~~~g~~~fr~~e~~---~l~~----l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ-----EIEKRTGAD-IGWVFDVEGEEGFRDREEK---VINE----L 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc-----hHHHHhCcC-HhHHHHHhCHHHHHHHHHH---HHHH----H
Confidence 4579999999999999999999998765555544 355555432 2334556677777766432 2222 2
Q ss_pred hcCCeEEEEeCCCC---CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChH-HHHHHHHHHH
Q 005630 431 HEGGQVGIFDATNS---SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE-AGLQDFKNRL 506 (687)
Q Consensus 431 ~~~G~iVIlDAtn~---~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e-~a~~df~~Ri 506 (687)
...+.+|| ..... .++.|+.+ .+.+ .++||+ .+.+.+.+|+..+. .+|...+. .++ .....+.+|.
T Consensus 71 ~~~~~~vi-~~ggg~v~~~~~~~~l---~~~~-~vv~L~---~~~e~~~~Ri~~~~-~rP~~~~~-~~~~~~~~l~~~R~ 140 (172)
T PRK05057 71 TEKQGIVL-ATGGGSVKSRETRNRL---SARG-VVVYLE---TTIEKQLARTQRDK-KRPLLQVD-DPREVLEALANERN 140 (172)
T ss_pred HhCCCEEE-EcCCchhCCHHHHHHH---HhCC-EEEEEe---CCHHHHHHHHhCCC-CCCCCCCC-CHHHHHHHHHHHHH
Confidence 22344444 32222 23334333 3344 577776 35778888887554 47888755 443 4456667788
Q ss_pred Hhhhh
Q 005630 507 ANYEK 511 (687)
Q Consensus 507 ~~y~~ 511 (687)
+.|++
T Consensus 141 ~~Y~~ 145 (172)
T PRK05057 141 PLYEE 145 (172)
T ss_pred HHHHh
Confidence 88765
No 93
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.85 E-value=2.9e-08 Score=99.58 Aligned_cols=128 Identities=19% Similarity=0.293 Sum_probs=79.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcC---CCCHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFR---ADNPEGMEARNEVAALAME 424 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~---~~~e~~~~~~~~vA~~~L~ 424 (687)
...|.+|+|.|-|||||||++..+...+. +-...++|.|++|+.. ..|.. .............+....+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~------p~~~~~~~~~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFH------PDYDELLKADPDEASELTQKEASRLAE 83 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGS------TTHHHHHHHHCCCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhc------cchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 46899999999999999999999988765 5677789999998733 11100 0111122333444555555
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 425 DMISWMHEGGQVGIFDATNSSRKRRN-MLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 425 dl~~~L~~~G~iVIlDAtn~~~e~R~-~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.+++.+.+.+..+|+|.|+...+... .+..+++.|+.+..+-+.|+ +++-..|+..|..
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHHHHHH
Confidence 56666677899999999999877655 56666888998877766664 7777778877753
No 94
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.84 E-value=1.2e-08 Score=98.40 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=73.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
.+.+|+|+|+|||||||+|+.|++.|++.. ++.|++.+...|.... .++.+.+...++..+.. ++.++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~-----~d~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~---~~~~l--- 70 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDF-----IDTDHLIEARAGKSIP-EIFEEEGEAAFRELEEE---VLAEL--- 70 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHHHcCCCHH-HHHHHHCHHHHHHHHHH---HHHHH---
Confidence 467999999999999999999999987654 4455555544443221 22333333333333211 11111
Q ss_pred HhcCCeEEEEeCC-CC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCCh-HHHHHHHHHHH
Q 005630 430 MHEGGQVGIFDAT-NS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRL 506 (687)
Q Consensus 430 L~~~G~iVIlDAt-n~-~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~-e~a~~df~~Ri 506 (687)
+...+ .||..+. .. ....|..+ .+ +..++|| .| +.+.+.+|+..+.. ++..... +. +...+.|.+|.
T Consensus 71 ~~~~~-~vi~~g~~~~~~~~~r~~l---~~-~~~~v~l--~~-~~~~~~~R~~~~~~-r~~~~~~-~~~~~~~~~~~~~~ 140 (175)
T PRK00131 71 LARHN-LVISTGGGAVLREENRALL---RE-RGTVVYL--DA-SFEELLRRLRRDRN-RPLLQTN-DPKEKLRDLYEERD 140 (175)
T ss_pred HhcCC-CEEEeCCCEeecHHHHHHH---Hh-CCEEEEE--EC-CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHHH
Confidence 11223 3333322 11 22333333 23 3445555 45 56777888876543 4444422 22 33344555565
Q ss_pred Hhhhhcc
Q 005630 507 ANYEKVY 513 (687)
Q Consensus 507 ~~y~~~y 513 (687)
..|...|
T Consensus 141 ~~~~~~~ 147 (175)
T PRK00131 141 PLYEEVA 147 (175)
T ss_pred HHHHhhc
Confidence 6565433
No 95
>PLN02199 shikimate kinase
Probab=98.80 E-value=2.4e-08 Score=105.92 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=89.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHh-hCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~-~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
...|+|+|+|||||||+++.|++.|++..+++|.+ -+.. .|. ....+|...++..|+.++..+..-+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l-----Ie~~~~G~-sI~eIf~~~GE~~FR~~E~e~L~~L~----- 170 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL-----IEQAMNGT-SVAEIFVHHGENFFRGKETDALKKLS----- 170 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH-----HHHHhcCC-CHHHHHHHhCHHHHHHHHHHHHHHHH-----
Confidence 44799999999999999999999998887777655 2222 232 23457788888888888765544332
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhh-hccCCCCCCCCCh-------HHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPDF-------EAGLQD 501 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r-~~~~pd~s~~~d~-------e~a~~d 501 (687)
.....|| ...... -.+...+.+.+.| .++||. + +.+.+.+||... ...+|...+. +. +.+.+.
T Consensus 171 --~~~~~VI-StGGG~-V~~~~n~~~L~~G-~vV~Ld--a-s~E~l~~RL~~~~~~~RPLL~~~-~~d~~~~~~~~L~~L 241 (303)
T PLN02199 171 --SRYQVVV-STGGGA-VIRPINWKYMHKG-ISIWLD--V-PLEALAHRIAAVGTDSRPLLHDE-SGDAYSVAFKRLSAI 241 (303)
T ss_pred --hcCCEEE-ECCCcc-cCCHHHHHHHhCC-eEEEEE--C-CHHHHHHHHhhcCCCCCCcCCCC-CcchhhhHHHHHHHH
Confidence 1223333 222222 2223333332234 477776 3 578888999752 2357877643 33 456678
Q ss_pred HHHHHHhhhh
Q 005630 502 FKNRLANYEK 511 (687)
Q Consensus 502 f~~Ri~~y~~ 511 (687)
|.+|.+.|++
T Consensus 242 ~~~R~plY~~ 251 (303)
T PLN02199 242 WDERGEAYTN 251 (303)
T ss_pred HHHHHHHHHh
Confidence 8889998875
No 96
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.75 E-value=4.9e-08 Score=94.90 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=76.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
.|+++|+|||||||+|+.|++.|++..+++|.+ .....+.... +++.......++.++..+...+ .
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~-----~~~~~g~~~~-~~~~~~g~~~~~~~e~~~~~~~-------~- 69 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQW-----LQSTSNMTVA-EIVEREGWAGFRARESAALEAV-------T- 69 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH-----HHHHhCCCHH-HHHHHHCHHHHHHHHHHHHHHh-------c-
Confidence 478899999999999999999988766555444 5444443322 2444445555555543332222 2
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc--cCCCCCCCCCh-HHHHHHHHHHHH
Q 005630 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDF-EAGLQDFKNRLA 507 (687)
Q Consensus 433 ~G~iVIlDAtn--~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~--~~pd~s~~~d~-e~a~~df~~Ri~ 507 (687)
.+..||..+.+ .....|+.+ .+.+ .++||+ + +++++.+|+..+.. .+|...+. +. +...+.|.+|.+
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l---~~~~-~~v~l~--~-~~~~~~~Rl~~r~~~~~rp~~~~~-~~~~~~~~~~~~r~~ 141 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFM---RNNG-IVIYLC--A-PVSVLANRLEANPEEDQRPTLTGK-PISEEVAEVLAEREA 141 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHH---HhCC-EEEEEE--C-CHHHHHHHHccccccccCCcCCCC-ChHHHHHHHHHHHHH
Confidence 23343332211 123334333 3344 355665 3 67888889876532 34555443 33 334455666777
Q ss_pred hhhh
Q 005630 508 NYEK 511 (687)
Q Consensus 508 ~y~~ 511 (687)
.|++
T Consensus 142 ~y~~ 145 (171)
T PRK03731 142 LYRE 145 (171)
T ss_pred HHHH
Confidence 7764
No 97
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.74 E-value=5.7e-08 Score=98.41 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=84.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcC-ceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~-tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~ 431 (687)
+||+||+|.|||||.|+.|.+.|...+.+ +..+. ++- ..|......|.+..+++..+ .++-..+-+ -.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii-~de---slg~~~ns~y~~s~~EK~lR--g~L~S~v~R-----~L 71 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRII-DDE---SLGIEKNSNYGDSQAEKALR--GKLRSAVDR-----SL 71 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe-chh---hcCCCCcccccccHHHHHHH--HHHHHHHHh-----hc
Confidence 79999999999999999999999988755 33332 222 35555556665555554433 222111111 12
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHH
Q 005630 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (687)
Q Consensus 432 ~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (687)
..|.+||+|+-|..+..|.++..+ +.....+-.|.+-|+.+.+.+.| .. +..|+--+. +++ .++.+..|.+
T Consensus 72 sk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N-s~--~~~p~e~gy-~~e-~le~L~~RyE 143 (281)
T KOG3062|consen 72 SKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN-SE--REDPGEDGY-DDE-LLEALVQRYE 143 (281)
T ss_pred ccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc-cc--CCCCCCCCC-CHH-HHHHHHHHhh
Confidence 259999999999999999998888 33343333444445544444444 22 334555444 443 3344444433
No 98
>PLN02200 adenylate kinase family protein
Probab=98.72 E-value=1.6e-07 Score=97.18 Aligned_cols=153 Identities=15% Similarity=0.218 Sum_probs=85.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~ 421 (687)
.|++|+++|.|||||||+|+.|+++++... ++.|+. |+....... ........+ .++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h-----is~gdllR~~i~~~s~-------~~~~i~~~~~~G~~vp~e~~~~ 109 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH-----LSAGDLLRREIASNSE-------HGAMILNTIKEGKIVPSEVTVK 109 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE-----EEccHHHHHHHhccCh-------hHHHHHHHHHcCCCCcHHHHHH
Confidence 578999999999999999999999976543 444444 443321110 000000000 011111
Q ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 422 AMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 422 ~L~dl~~~L~-~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
.+. .-+. ..+..+|+|+...+.+++..+.++...... +++.+.|+ ++++.+|+..|...+.| +..+
T Consensus 110 ~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd-~vi~Ld~~-~e~~~~Rl~~R~~~r~d--------d~~e 176 (234)
T PLN02200 110 LIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPN-VVLFFDCP-EEEMVKRVLNRNQGRVD--------DNID 176 (234)
T ss_pred HHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCC-EEEEEECC-HHHHHHHHHcCcCCCCC--------CCHH
Confidence 111 1111 124568999988888888777766322222 34445665 56777777766432222 2245
Q ss_pred HHHHHHHhhhhccccCCC----CCceEEeec
Q 005630 501 DFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl~e----~~yik~in~ 527 (687)
.+.+|++.|.+..+|+-+ ..-+..||.
T Consensus 177 ~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa 207 (234)
T PLN02200 177 TIKKRLKVFNALNLPVIDYYSKKGKLYTINA 207 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 567888888887776532 133445564
No 99
>PRK01184 hypothetical protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=92.72 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=72.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh-hhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH-HHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM-ISW 429 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl-~~~ 429 (687)
++|+|+|+|||||||+|+ +++.++. .+++. |.+|+.....+. ........+...+.+..+....+.++ ...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKRGL-EPTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999997 5665443 33544 334775432111 11111112222222222221222111 222
Q ss_pred Hh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHh
Q 005630 430 MH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 508 (687)
Q Consensus 430 L~-~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~ 508 (687)
+. ..+..+|+|+. .....++.+++.... .+..|.+.|+ +++..+|+..|.+ ++ +.. ..+++.+|+..
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~~~~~--~~~~i~v~~~-~~~~~~Rl~~R~~--~~-----d~~-~~~~~~~r~~~ 142 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRKEFPE--DFILIAIHAP-PEVRFERLKKRGR--SD-----DPK-SWEELEERDER 142 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHHhCCc--ccEEEEEECC-HHHHHHHHHHcCC--CC-----Chh-hHHHHHHHHHH
Confidence 33 35789999998 466666666665322 2345555675 6677777776543 21 111 14556667665
Q ss_pred h
Q 005630 509 Y 509 (687)
Q Consensus 509 y 509 (687)
+
T Consensus 143 q 143 (184)
T PRK01184 143 E 143 (184)
T ss_pred H
Confidence 4
No 100
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=9.4e-08 Score=91.45 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=94.7
Q ss_pred EccCCCChHHHHHHHHHHHhhcCcCceEEeh-hhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 005630 357 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 435 (687)
Q Consensus 357 vGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~ 435 (687)
.|.+||||||+|++|++.|++..++-|-|+. ..++|+..|. -..++++.--.+.+...+....+ .|.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~Gi----PL~DdDR~pWL~~l~~~~~~~~~--------~~~ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGI----PLNDDDRWPWLEALGDAAASLAQ--------KNK 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCC----CCCcchhhHHHHHHHHHHHHhhc--------CCC
Confidence 3889999999999999999999998888876 3344443332 23445555445555444444333 567
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhhhcccc
Q 005630 436 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 515 (687)
Q Consensus 436 iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~yEP 515 (687)
.+|+....+++..|+.+++... ++.++|++ -+.+++.+|+..|+.+ |- +..+ +.-|-...|+
T Consensus 69 ~~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~---g~~~~i~~Rm~~R~gH---FM----~~~l-------l~SQfa~LE~ 130 (161)
T COG3265 69 HVVIACSALKRSYRDLLREANP-GLRFVYLD---GDFDLILERMKARKGH---FM----PASL-------LDSQFATLEE 130 (161)
T ss_pred ceEEecHHHHHHHHHHHhccCC-CeEEEEec---CCHHHHHHHHHhcccC---CC----CHHH-------HHHHHHHhcC
Confidence 7888899999999999998743 35666665 4789999999988752 22 2222 2334344455
Q ss_pred CCCCCceEEeec
Q 005630 516 VDEGSYIKMIDM 527 (687)
Q Consensus 516 l~e~~yik~in~ 527 (687)
.+.+..+..||+
T Consensus 131 P~~de~vi~idi 142 (161)
T COG3265 131 PGADEDVLTIDI 142 (161)
T ss_pred CCCCCCEEEeeC
Confidence 544457777777
No 101
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.69 E-value=1.1e-07 Score=93.00 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=72.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCC----------CCCCcCCCCHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ----------SADFFRADNPEGMEARNEVAA 420 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~----------~~~f~~~~~e~~~~~~~~vA~ 420 (687)
.+|+++|.|||||||+|+.|+++++... ++.|++ |+...+... ...+.+ ....+..+.+.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 76 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH-----LSTGDLLRAEVASGSERGKQLQAIMESGDLVP--LDTVLDLLKDAMV 76 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHH
Confidence 4889999999999999999999976544 444443 332211100 000000 1111111111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
. ....|..+|+|+...+..+...+... .....++|.+.|+ ++++.+|+..|... .+-. +....
T Consensus 77 ~--------~~~~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~-----d~~~~ 139 (188)
T TIGR01360 77 A--------ALGTSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCS-EDTMVKRLLKRAET-SGRV-----DDNEK 139 (188)
T ss_pred c--------ccCcCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECC-HHHHHHHHHccccc-CCCC-----CCCHH
Confidence 1 11257889999987665444433322 1222334445665 67788888766431 1111 12234
Q ss_pred HHHHHHHhhhhcccc
Q 005630 501 DFKNRLANYEKVYEP 515 (687)
Q Consensus 501 df~~Ri~~y~~~yEP 515 (687)
.+.+|+..|.+.-.|
T Consensus 140 ~~~~r~~~~~~~~~~ 154 (188)
T TIGR01360 140 TIKKRLETYYKATEP 154 (188)
T ss_pred HHHHHHHHHHHhhHH
Confidence 566777766544333
No 102
>PRK12338 hypothetical protein; Provisional
Probab=98.65 E-value=3.1e-07 Score=98.69 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=82.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCC------------------C--C-
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA------------------D--N- 408 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~------------------~--~- 408 (687)
+|.+|+++|.||+||||+|++|+++|++..+ ...|-+|+.+.+..+.. +.+. . .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~----~~tD~~r~~~~~~~~~~-~~P~l~~ssy~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL----IETDFIREVVRGIIGKE-YAPALHKSSYNAYTALRDKENFKNNEE 77 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE----ccChHHHHHHcCCCCcc-cCchhhcccHHHHhhcCCcccccchHH
Confidence 5789999999999999999999999876432 23344488766532211 1000 0 0
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 409 --PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 409 --e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
-++|+...+.+...++.++.-....|..+|++++...+......... ....+.|+-.. ++++..++|...|..
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~--~~~~v~~~vl~-~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFE--ENASIHFFILS-ADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhc--ccCceEEEEEE-CCHHHHHHHHHHhhh
Confidence 12344445555555555655555679999999999998766542221 22234455444 789999999988764
No 103
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.62 E-value=1.1e-07 Score=101.94 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=83.0
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005630 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (687)
Q Consensus 347 ~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl 426 (687)
+...+..|+|+|+|||||||+|+.|++.|++..+ +.|.+.+...|... ..++....+..|+.++..+. .
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-----d~D~~i~~~~G~~i-~ei~~~~G~~~fr~~e~~~l---~-- 197 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-----ELNREIEREAGLSV-SEIFALYGQEGYRRLERRAL---E-- 197 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-----eHHHHHHHHhCCCH-HHHHHHHCHHHHHHHHHHHH---H--
Confidence 3456678999999999999999999999877655 44455555554322 22333345555554432221 1
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 427 ~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
+.+.+.+.+||..+... ...-..+..+.+ ++.++|| .| +.+.+.+|+..+...+|...+....+...+.+.+|.
T Consensus 198 -~ll~~~~~~VI~~Ggg~-v~~~~~~~~l~~-~~~~V~L--~a-~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~ 271 (309)
T PRK08154 198 -RLIAEHEEMVLATGGGI-VSEPATFDLLLS-HCYTVWL--KA-SPEEHMARVRAQGDLRPMADNREAMEDLRRILASRE 271 (309)
T ss_pred -HHHhhCCCEEEECCCch-hCCHHHHHHHHh-CCEEEEE--EC-CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 11223444555443332 221122222333 3335555 44 578888888776544453332213566667777777
Q ss_pred Hhhhh
Q 005630 507 ANYEK 511 (687)
Q Consensus 507 ~~y~~ 511 (687)
+.|+.
T Consensus 272 ~~y~~ 276 (309)
T PRK08154 272 PLYAR 276 (309)
T ss_pred HHHHh
Confidence 77753
No 104
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.62 E-value=1.2e-07 Score=96.22 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=83.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 425 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~L~d 425 (687)
-|+++|.|||||||+|+.|++++++..+++.-+ .|+....... ...+....+. ++...+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl----~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~--- 67 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM----LRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGL--- 67 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc----HHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHH---
Confidence 488999999999999999999988776665222 1443221100 0000000000 011111
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhccCCC-------------
Q 005630 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPD------------- 488 (687)
Q Consensus 426 l~~~L~~--~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~~pd------------- 488 (687)
+...+.. .+..+|+|+...+.++.+.+.+. ...+..+ .+|.+.|+ ++++.+|+..|.. .|.
T Consensus 68 i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~-~~~~g~~~~~~~~~p~ 145 (215)
T PRK00279 68 VKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRI-CPACGRTYHVKFNPPK 145 (215)
T ss_pred HHHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcc-cCccCCcccccCCCCC
Confidence 1112222 23468999977777777777665 4444433 56666786 6677778877642 110
Q ss_pred -----------CCCCCChHHHHHHHHHHHHhhhhccccCC
Q 005630 489 -----------YAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 489 -----------~s~~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
... ..++..+.+.+|+..|++..+|+-
T Consensus 146 ~~~~~~~~~~~l~~--r~dd~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 146 VEGKCDVCGEELIQ--RADDNEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred CcCcCcCCCCcccC--CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 111 123345667889999988777764
No 105
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.62 E-value=4e-07 Score=89.76 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=81.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH---HHHH-HHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN---EVAA-LAMEDMIS 428 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~---~vA~-~~L~dl~~ 428 (687)
|+++|.|||||||+|+.|++.++... ++.++. |+...... +........+. .+-. .+..-+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~-----i~~~~l~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~l~~~ 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH-----ISTGDLLREEIASGT-------ELGKKAKEYIDSGKLVPDEIVIKLLKE 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-----EECcHHHHHHHhcCC-------hHHHHHHHHHHcCCccCHHHHHHHHHH
Confidence 79999999999999999999976544 444433 33221100 00000000000 0000 01111112
Q ss_pred HHhc--CCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCCHHHHHHHHHhhhccCC---CCC-----------C
Q 005630 429 WMHE--GGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQSP---DYA-----------E 491 (687)
Q Consensus 429 ~L~~--~G~iVIlDAtn~~~e~R~~l~el~~-~~~~vvfIE~~c~d~eii~rrI~~r~~~~p---d~s-----------~ 491 (687)
.+.. .+..+|+|+...+..+.+.+.+... .....++|.+.|+ ++++.+|+..|..... .|. .
T Consensus 70 ~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~ 148 (194)
T cd01428 70 RLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLS 148 (194)
T ss_pred HHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccc
Confidence 2332 2567889998777777777777632 2234445556675 6777888877753210 010 0
Q ss_pred CCChHHHHHHHHHHHHhhhhccccCC
Q 005630 492 EPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 492 ~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
. ..++..+.+.+|+..|+...+|+-
T Consensus 149 ~-r~dd~~~~i~~R~~~y~~~~~~i~ 173 (194)
T cd01428 149 Q-RSDDNEETIKKRLEVYKEQTAPLI 173 (194)
T ss_pred c-CCCCCHHHHHHHHHHHHHhHHHHH
Confidence 0 112233668899999988777764
No 106
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=7.9e-08 Score=100.46 Aligned_cols=125 Identities=26% Similarity=0.250 Sum_probs=85.9
Q ss_pred CCCCccEEEeccCCcccccCCC------------c------------------CC---CCCCCHHHHHHHHHHHHHHHHH
Q 005630 556 HLTPRPILLTRHGESRDNVRGR------------I------------------GG---DTILSDAGEIYAKKLANFVEKR 602 (687)
Q Consensus 556 ~~~~~~I~LVRHGeS~~n~~~~------------~------------------~g---D~pLSe~G~~qA~~La~~L~~~ 602 (687)
....+.|++|||||..++..+. + .+ |+|||..|.-||+..|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 4456889999999997743222 1 01 8899999999999999998776
Q ss_pred hccCCCCEEEecCcHHHHHhhhcc---cC----CCcccccccccccc----cccCC-CCHHHHHHhCHH---HHHHHHcC
Q 005630 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINA----GVCDG-MTYEEIKKNMPE---EYEARKKD 667 (687)
Q Consensus 603 l~~~~~~~V~tSpl~Ra~qTA~~i---~g----~~v~~~~~L~Ei~~----G~~EG-~t~~ei~~~~P~---e~~~~~~d 667 (687)
+..++.|||||..||+|||..+ .+ ..+...+.|-|... |.+.. .+..++....+. .|....
T Consensus 89 --~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~~y~P~~-- 164 (272)
T KOG3734|consen 89 --GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYDPVY-- 164 (272)
T ss_pred --CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcccccchhh--
Confidence 7899999999999999999998 33 56677788877542 11121 234444332211 111111
Q ss_pred CCCCCCCCCCCHHHHHHhh
Q 005630 668 KLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 668 ~~~~r~PgGES~~dl~~Rv 686 (687)
...+-.+||++++..|.
T Consensus 165 --~~~~~~~es~e~~~~R~ 181 (272)
T KOG3734|consen 165 --KETPRWGESLEDCNDRI 181 (272)
T ss_pred --hhcccccccHHHHHHHH
Confidence 12345789999999996
No 107
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.58 E-value=5.5e-07 Score=89.21 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=68.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhC-CC-CCCCC-cCCC---CHHHHHHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VN-QSADF-FRAD---NPEGMEARNEVAALAMED 425 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g-~~-~~~~f-~~~~---~e~~~~~~~~vA~~~L~d 425 (687)
.+|+|.|-|.|||||||++|+..+.. .--.+..|.+++.+.. .. ...++ +..+ ....+..+......
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~---p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---- 74 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE---PWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHA---- 74 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHH----
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC---CeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHH----
Confidence 48999999999999999999998752 2234666677773211 11 11222 1111 12222222221111
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhh
Q 005630 426 MISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (687)
Q Consensus 426 l~~~L~~~G~iVIlDAtn~~~e~-R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r 482 (687)
.++-+.+.|..||+|........ .+.++++.. +++++||.+.|+ .+++++|=+.|
T Consensus 75 ~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~-~~~vl~VgV~Cp-leil~~RE~~R 130 (174)
T PF07931_consen 75 AIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA-GLPVLFVGVRCP-LEILERRERAR 130 (174)
T ss_dssp HHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT-TS-EEEEEEE---HHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC-CCceEEEEEECC-HHHHHHHHHhc
Confidence 12224558999999999888775 666756543 688999999997 45666665554
No 108
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.57 E-value=2e-07 Score=105.90 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=83.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
-|+++|+|||||||+|+.|++.|++..+++| ++++...|... ..+|.+..+..++.++..+...+......+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D-----~~i~~~~g~~i-~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis 75 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD-----EEIERREGRSV-RRIFEEDGEEYFRLKEKELLRELVERDNVVVA 75 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc-----HHHHHHcCCCH-HHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEE
Confidence 4899999999999999999999877665554 44665555332 34566667777766654433322100000111
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhhhc
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKV 512 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~ 512 (687)
.|..+|+| .+.|+.++ +. .++|+. + +.+++.+|+..+ .+|...+. .+...+.|.+|.+.|++.
T Consensus 76 ~Gggvv~~-----~~~r~~l~---~~--~vI~L~--a-s~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~lY~~~ 138 (488)
T PRK13951 76 TGGGVVID-----PENRELLK---KE--KTLFLY--A-PPEVLMERVTTE--NRPLLREG--KERIREIWERRKQFYTEF 138 (488)
T ss_pred CCCccccC-----hHHHHHHh---cC--eEEEEE--C-CHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHHHhcc
Confidence 22223333 23455443 22 256654 4 578899999654 36766532 466677888999999875
Q ss_pred c
Q 005630 513 Y 513 (687)
Q Consensus 513 y 513 (687)
+
T Consensus 139 ~ 139 (488)
T PRK13951 139 R 139 (488)
T ss_pred c
Confidence 4
No 109
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.56 E-value=3.7e-08 Score=95.34 Aligned_cols=132 Identities=18% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 005630 360 PARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIF 439 (687)
Q Consensus 360 PGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIl 439 (687)
|||||||+++.||+.|++..+++|.+. ....|. ....++...+++.|+..+..+...+. ...+.++.+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i-----~~~~g~-si~~i~~~~G~~~fr~~E~~~l~~l~------~~~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEI-----EERTGM-SISEIFAEEGEEAFRELESEALRELL------KENNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHH-----HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH------CSSSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHH-----HHHhCC-cHHHHHHcCChHHHHHHHHHHHHHHh------ccCcEEEeC
Confidence 799999999999999999887666553 223331 12345666677777766654433222 222333333
Q ss_pred eC-CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCCh-HHHHHHHHHHHHhhhhc
Q 005630 440 DA-TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEKV 512 (687)
Q Consensus 440 DA-tn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~-e~a~~df~~Ri~~y~~~ 512 (687)
-+ +-...+.++.++ .+..++||. .+.+.+.+|+..+.. +|.+.+. .. +...+.+.+|.+.|++.
T Consensus 69 GGG~~~~~~~~~~L~----~~g~vI~L~---~~~~~l~~Rl~~~~~-Rp~l~~~-~~~~~~~~~~~~R~~~Y~~~ 134 (158)
T PF01202_consen 69 GGGIVLKEENRELLK----ENGLVIYLD---ADPEELAERLRARDN-RPLLKGK-MEHEEILELLFEREPLYEQA 134 (158)
T ss_dssp -TTGGGSHHHHHHHH----HHSEEEEEE-----HHHHHHHHHHHCT-SGGTCSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHH----hCCEEEEEe---CCHHHHHHHHhCCCC-CCCCCCC-ChHHHHHHHHHHHHHHHHhc
Confidence 22 233344555554 234577886 357889999987765 7888765 33 24556666888888764
No 110
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=6.3e-07 Score=86.38 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=85.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
-|.+|++.|.+||||||+|++|++.|++..++.|-|+.-.- +|+..|.. ..++++---...++..++..+.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip----LnD~DR~pWL~~i~~~~~~~l~---- 82 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP----LNDDDRWPWLKKIAVELRKALA---- 82 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC----CCcccccHHHHHHHHHHHHHhh----
Confidence 46799999999999999999999999999888888776433 44443322 2334444334444444444333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el~~-------~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.|+.||+....+++..|+.++.-.+ ...++.|+-... ..+++..|+..|+.
T Consensus 83 ----~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 83 ----SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred ----cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhccc
Confidence 6999999999999999999998411 124455555555 47888889887765
No 111
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.50 E-value=2e-07 Score=94.17 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=79.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 425 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~L~d 425 (687)
|+++|.|||||||+|+.|+++++...+++ |+. |+....... + .......+. ++...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~-----gdllr~~~~~~~~---~----~~~~~~~~~~g~~vp~~~~~~l--- 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST-----GDLLRAEIKAGTP---L----GKKAKEYMEKGELVPDEIVNQL--- 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh-----hHHHHHhhccccH---H----HHHHHHHHhCCCCCCHHHHHHH---
Confidence 78899999999999999999876655443 332 442211100 0 000000000 111111
Q ss_pred HHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhcc---CCCC----------
Q 005630 426 MISWMHE---GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---SPDY---------- 489 (687)
Q Consensus 426 l~~~L~~---~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~---~pd~---------- 489 (687)
+...+.. .+..+|+|+...+..+.+.+.+..... ...+|.+.|+ ++++.+|+..|... ...|
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~-~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~ 144 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEK-IDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVP 144 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccC-CCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccC
Confidence 1222322 256799999777777777777663211 2234555675 67777888777410 0000
Q ss_pred -----CC----CCChHHHHHHHHHHHHhhhhccccCC
Q 005630 490 -----AE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 490 -----s~----~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
.+ . ..++..+-+.+|+..|++...|+-
T Consensus 145 ~~~~~~~~~l~~-R~dD~~e~i~~Rl~~y~~~~~~v~ 180 (210)
T TIGR01351 145 GCDDCTGELLIQ-REDDTEEVVKKRLEVYKEQTEPLI 180 (210)
T ss_pred CcCcccCCcccc-CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 00 0 112234567889999988777764
No 112
>PRK04040 adenylate kinase; Provisional
Probab=98.43 E-value=2e-06 Score=86.11 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+.+|+++|.|||||||+++.|++.|. .....++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHH
Confidence 57899999999999999999999974 1344566677743
No 113
>PRK14530 adenylate kinase; Provisional
Probab=98.42 E-value=1.7e-06 Score=87.73 Aligned_cols=148 Identities=17% Similarity=0.238 Sum_probs=77.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCH-HHHHHH-----HHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNP-EGMEAR-----NEVAALAMEDM 426 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e-~~~~~~-----~~vA~~~L~dl 426 (687)
.|+++|.|||||||+|+.|+++++... ++.|++-+...+.... ..+..... ..+... .++...++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~-----i~~g~~lr~~~~~~~~-~~~~~~~~~~~~~~~g~~~~d~~~~~~l~-- 76 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEH-----VTTGDALRANKQMDIS-DMDTEYDTPGEYMDAGELVPDAVVNEIVE-- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE-----EeccHHHHHhccCCcc-cccchHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 588899999999999999999976544 3444443222211110 11111110 000000 011112121
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCC----C---------C---
Q 005630 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD----Y---------A--- 490 (687)
Q Consensus 427 ~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd----~---------s--- 490 (687)
..+. .....|+|+...+.++++.+..+...+ .+++| .|+ ++++.+|+..|.. .+. | .
T Consensus 77 -~~l~-~~~~~IldG~pr~~~q~~~l~~~~~~d-~vI~L--d~~-~~~l~~Rl~~R~~-~~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 77 -EALS-DADGFVLDGYPRNLEQAEYLESITDLD-VVLYL--DVS-EEELVDRLTGRRV-CPDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred -HHHh-cCCCEEEcCCCCCHHHHHHHHHhcCCC-EEEEE--eCC-HHHHHHHHhCCCc-CcccCCccccCCCCCcccccC
Confidence 1222 234578898666676766665543222 24444 554 6778888877643 111 0 0
Q ss_pred -------CCCChHHHHHHHHHHHHhhhhccccC
Q 005630 491 -------EEPDFEAGLQDFKNRLANYEKVYEPV 516 (687)
Q Consensus 491 -------~~~d~e~a~~df~~Ri~~y~~~yEPl 516 (687)
.. ..++..+.+.+|+..|.+.-.|+
T Consensus 150 ~~~~~rl~~-R~dD~~e~i~~Rl~~y~~~~~~v 181 (215)
T PRK14530 150 DECGGELIQ-RDDDTEETVRERLDVFEENTEPV 181 (215)
T ss_pred cccCCcccC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 12234466889999998866666
No 114
>PRK06696 uridine kinase; Validated
Probab=98.42 E-value=1.5e-06 Score=88.84 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 338 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 338 ~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.|++........+|++|.+.|.|||||||+|++|++.|+..|..+.+++.|+|-
T Consensus 9 ~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 9 ELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 344443323345799999999999999999999999998777777676667663
No 115
>PRK06217 hypothetical protein; Validated
Probab=98.39 E-value=3.3e-06 Score=83.53 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=67.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
-|+++|.|||||||+|++|++.|+... ++.|++.... . ...+...... ..+...+... +.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~-----~~~D~~~~~~---~-~~~~~~~~~~---~~~~~~~~~~-------~~- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPH-----LDTDDYFWLP---T-DPPFTTKRPP---EERLRLLLED-------LR- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcE-----EEcCceeecc---C-CCCccccCCH---HHHHHHHHHH-------Hh-
Confidence 499999999999999999999986544 4444332211 1 1112111111 1111222221 22
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhcc---CCCCCCCCChHHHHHHHHHHHHhh
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---SPDYAEEPDFEAGLQDFKNRLANY 509 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~---~pd~s~~~d~e~a~~df~~Ri~~y 509 (687)
.+...|+|+.... .++.+. ...+ .++||+ | +.++..+|+..|... .|...+. +.+....+|.+++..|
T Consensus 63 ~~~~~vi~G~~~~--~~~~~~--~~~d-~~i~Ld--~-~~~~~~~Rl~~R~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 133 (183)
T PRK06217 63 PREGWVLSGSALG--WGDPLE--PLFD-LVVFLT--I-PPELRLERLRLREFQRYGNRILPGG-DMHKASLEFLEWAASY 133 (183)
T ss_pred cCCCEEEEccHHH--HHHHHH--hhCC-EEEEEE--C-CHHHHHHHHHcCcccccCcccCCCC-CHHHHHHHHHHHHHhc
Confidence 3455788855432 222211 2223 356664 4 477788888776531 2222333 4566666777777655
Q ss_pred h
Q 005630 510 E 510 (687)
Q Consensus 510 ~ 510 (687)
.
T Consensus 134 ~ 134 (183)
T PRK06217 134 D 134 (183)
T ss_pred c
Confidence 3
No 116
>PRK03839 putative kinase; Provisional
Probab=98.33 E-value=8.1e-07 Score=87.29 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=26.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
.|+++|+|||||||+|++|++.++...++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 5899999999999999999999876554443
No 117
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=98.31 E-value=4.3e-07 Score=91.11 Aligned_cols=75 Identities=25% Similarity=0.295 Sum_probs=59.8
Q ss_pred CCccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhccc-----CCCcc
Q 005630 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-----GFPKI 632 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~-----g~~v~ 632 (687)
..+.|+||||||-... +.-..||+.|++||+.+++.|.+. +.+++.|..|++.||++||.+|+ ++..+
T Consensus 93 atRhI~LiRHgeY~~~-----g~~~hLTelGReQAE~tGkRL~el--glk~d~vv~StM~RA~ETadIIlk~l~d~lk~~ 165 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVD-----GSLEHLTELGREQAELTGKRLAEL--GLKFDKVVASTMVRATETADIILKHLPDDLKRV 165 (284)
T ss_pred hhceEEEEeccceecc-----CchhhcchhhHHHHHHHhHHHHHc--CCchhhhhhhhhhhhHHHHHHHHHhCCCcccee
Confidence 3488999999996432 112379999999999999999887 89999999999999999999991 33444
Q ss_pred ccccccc
Q 005630 633 QWRALDE 639 (687)
Q Consensus 633 ~~~~L~E 639 (687)
..+.|+|
T Consensus 166 s~~ll~E 172 (284)
T KOG4609|consen 166 SCPLLRE 172 (284)
T ss_pred ccccccc
Confidence 5556665
No 118
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.30 E-value=2.9e-06 Score=77.39 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=27.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+|+++|.|||||||+|+.|++.++. .+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~-----~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF-----PVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----eEEEecce
Confidence 6899999999999999999999753 34666664
No 119
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.28 E-value=4.8e-05 Score=74.63 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++|++.|.+||||||+++.|++.|...|..+..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999999999999998777766554
No 120
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.28 E-value=4.5e-05 Score=75.80 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
+.+|++.|.+||||||+++.|+++|...|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5799999999999999999999999876654443
No 121
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.24 E-value=6.1e-06 Score=81.82 Aligned_cols=150 Identities=14% Similarity=0.092 Sum_probs=82.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH------H
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED------M 426 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~d------l 426 (687)
+|.++|.|||||||+|+.|++.|...+.++.+++.|+|-+-........+.++....-.+..+.+....+.+. .
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5889999999999999999999998888999999999954210111111222221111122222222211110 0
Q ss_pred HHH-----------HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHH-HHHHHHHhhhccCCCCCCCCC
Q 005630 427 ISW-----------MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD-IIERNIRLKIQQSPDYAEEPD 494 (687)
Q Consensus 427 ~~~-----------L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~e-ii~rrI~~r~~~~pd~s~~~d 494 (687)
+++ ......++|+++.+.... .++++.. -.+||+ ++.+. .+.||+.+.... .+. +
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~~d---~~I~vd--~~~~~~rl~rri~RD~~~----rg~-~ 147 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSLLD---IRVAVS--GGVHLNRLLRRVVRDIQF----RGY-S 147 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhhcC---EEEEEe--CCccHHHHHHHHHHhHHh----hCC-C
Confidence 000 011356899999887632 3444421 124555 44332 366676554332 223 5
Q ss_pred hHHHHHHHHHHHHhhhhccccC
Q 005630 495 FEAGLQDFKNRLANYEKVYEPV 516 (687)
Q Consensus 495 ~e~a~~df~~Ri~~y~~~yEPl 516 (687)
.+..+.. ..+++.++..|+|.
T Consensus 148 ~~~~i~~-~~~~~~~~~~~~~~ 168 (179)
T cd02028 148 AELTILM-WPSVPSGEEFIIPP 168 (179)
T ss_pred HHHHhhh-cccccCchhhcCCC
Confidence 5666555 45667777777654
No 122
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.24 E-value=2.1e-05 Score=84.07 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=81.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCC-C-------CCCc--------CCCC---H
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-S-------ADFF--------RADN---P 409 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~-~-------~~f~--------~~~~---e 409 (687)
..|++|+++|.+||||||+|.+|+++|+.. .++..|.+|+.+..... + ..|. +... -
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~----~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR----SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 478999999999999999999999998543 25556666754422100 0 0110 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhcc
Q 005630 410 EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (687)
Q Consensus 410 ~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~ 485 (687)
.+|....+.....++.++.-....|..+|+-+.+..++.-+... .++. .++.+-|...+++.+++|+..|.+.
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~-~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY--LENP-NVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh--hcCC-CEEEEEEEECCHHHHHHHHHHHHhh
Confidence 22333333333335555554555799999999999987633311 2222 2445566778999999999888763
No 123
>PRK02496 adk adenylate kinase; Provisional
Probab=98.23 E-value=3.6e-06 Score=82.99 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=74.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~L~ 424 (687)
-|+++|.|||||||+|+.|++.++... ++.|+. |+....... . .......+ .++...++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~-----i~~~~~~~~~~~~~~~---~----g~~~~~~~~~g~~~~~~~~~~~l- 69 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPH-----ISTGDILRQAIKEQTP---L----GIKAQGYMDKGELVPDQLVLDLV- 69 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----EEhHHHHHHHHhccCh---h----HHHHHHHHHCCCccCHHHHHHHH-
Confidence 478899999999999999999976544 333333 332211000 0 00000000 01111111
Q ss_pred HHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 425 DMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 425 dl~~~L~~--~G~iVIlDAtn~~~e~R~~l~el-~~~~~-~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
...+.. .....|+|+...+..+.+.+.++ ...+. ...+|.+.| +++++.+|+..|.+ +| +.+ +
T Consensus 70 --~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~--~d-----d~~---~ 136 (184)
T PRK02496 70 --QERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGR--KD-----DTE---E 136 (184)
T ss_pred --HHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCC--CC-----CCH---H
Confidence 112221 23458889988887776666655 22221 223444456 47888888887643 22 222 3
Q ss_pred HHHHHHHhhhhccccC
Q 005630 501 DFKNRLANYEKVYEPV 516 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl 516 (687)
-+.+|+..|++.-+|+
T Consensus 137 ~~~~r~~~y~~~~~~v 152 (184)
T PRK02496 137 VIRRRLEVYREQTAPL 152 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667888888744444
No 124
>PRK14528 adenylate kinase; Provisional
Probab=98.22 E-value=1e-05 Score=80.61 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=76.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC-----CCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDM 426 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~-----~~f~~~~~e~~~~~~~~vA~~~L~dl 426 (687)
.|++.|.|||||||+|+.|+++++... ++.|+. |.... .+.. ..|...... .-.++.... +
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~-----is~~~~lr~~~~-~~~~~g~~~~~~~~~g~l----vp~~~~~~~---~ 69 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ-----ISTGDILREAVK-NQTAMGIEAKRYMDAGDL----VPDSVVIGI---I 69 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe-----eeCCHHHHHHhh-cCCHHHHHHHHHHhCCCc----cCHHHHHHH---H
Confidence 488899999999999999999976443 444444 43221 1100 000000000 000111111 1
Q ss_pred HHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHH
Q 005630 427 ISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (687)
Q Consensus 427 ~~~L~~--~G~iVIlDAtn~~~e~R~~l~el-~~~~~-~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df 502 (687)
...+.+ .....|+|+--.+.++-+.+.++ ...+. .-.+|.+.|+ ++++.+|+..|.....- .+...+-+
T Consensus 70 ~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~gr------~dd~~e~i 142 (186)
T PRK14528 70 KDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEGR------ADDNEATI 142 (186)
T ss_pred HHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccCC------CCCCHHHH
Confidence 122222 23458889865566666666655 33222 2235555675 66777777766431111 11223457
Q ss_pred HHHHHhhhhccccCC
Q 005630 503 KNRLANYEKVYEPVD 517 (687)
Q Consensus 503 ~~Ri~~y~~~yEPl~ 517 (687)
.+|+..|.+...|+-
T Consensus 143 ~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 143 KNRLDNYNKKTLPLL 157 (186)
T ss_pred HHHHHHHHHHhHHHH
Confidence 889999988888774
No 125
>PRK06761 hypothetical protein; Provisional
Probab=98.22 E-value=5.8e-06 Score=87.80 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=77.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
+.+|+++|+|||||||+++.|+++|...+++++.+..++. +... ......|..++.....+.....++...+ ..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d--~~~~~~~~~eer~~~l~~~~~f~~~l~~---~~ 77 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPAD--YDGVACFTKEEFDRLLSNYPDFKEVLLK---NV 77 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchh--hccccCCCHHHHHHHHHhhhHHHHHHHH---HH
Confidence 3589999999999999999999999988888887644332 2211 1122334333344444444444433222 12
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH--HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM--AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el--~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
+ ..|..+|+-..-.....|+.+.+- .... +.++. .+ +++.+++|+.+|.
T Consensus 78 ~-~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~--v~~~h-~~-p~e~i~~R~~~rw 128 (282)
T PRK06761 78 L-KKGDYYLLPYRKIKNEFGDQFSDELFNDIS--KNDIY-EL-PFDKNTELITDRW 128 (282)
T ss_pred H-HcCCeEEEEehhhhHHHhhhhhhhhcccce--eeeee-cC-CHHHHHHHHHHHH
Confidence 2 247888887777778888888752 2222 33333 33 6888888887664
No 126
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.21 E-value=7.5e-06 Score=81.20 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+|+++|.+|||||||++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999988754
No 127
>PRK08356 hypothetical protein; Provisional
Probab=98.20 E-value=5.2e-05 Score=75.82 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=60.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcC-CC------CHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFR-AD------NPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~-~~------~e~~~~~~~~vA~~ 421 (687)
..++|+++|.|||||||+|+.|++ + ++. ++..++. ++.. .......+|. +. ....+....+++..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~--~is~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~ 76 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFC--RVSCSDPLIDLL-THNVSDYSWVPEVPFKGEPTRENLIELGRYLKE 76 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C---CCc--EEeCCCcccccc-cccccccccccHHHHhhccccccHHHHHHHHHH
Confidence 457899999999999999999963 2 443 3444432 2211 1111111111 10 01111111222210
Q ss_pred ------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 422 ------AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 422 ------~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
..+.+...+.. +..+|+|+. .+...++.++.. +..++|| .|+ .+++.+|+..|..
T Consensus 77 ~yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~~---~~~vi~l--~~~-~~~~~~Rl~~R~~ 137 (195)
T PRK08356 77 KYGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKRM---GGKVIYV--EAK-PEIRFERLRRRGA 137 (195)
T ss_pred hcCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHhc---CCEEEEE--ECC-HHHHHHHHHhcCC
Confidence 00111222322 336888977 666666655442 2345555 454 6888889987754
No 128
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.20 E-value=1.6e-05 Score=77.82 Aligned_cols=27 Identities=30% Similarity=0.227 Sum_probs=23.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.+|+|+|.+||||||+++.|++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc
Confidence 489999999999999999999976543
No 129
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.19 E-value=2.1e-05 Score=73.73 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=73.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
+|+++|.|||||||+|+.|++.++...++.+.+....+.+.... .. ... ...+.....+. + +..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~---~~-----~~~----~i~~~l~~~~~---~-~~~ 64 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASE---VA-----AIP----EVRKALDERQR---E-LAK 64 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHH---hc-----ccH----hHHHHHHHHHH---H-Hhh
Confidence 58999999999999999999998766656554322221110000 00 000 01111111111 1 222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHh-hhh
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN-YEK 511 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~-y~~ 511 (687)
. ..+|+|+...... +....-.++||+ + ++++..+|+..|..... .+. +++++.+.+.+|-.. ++.
T Consensus 65 ~-~~~Vidg~~~~~~-------~~~~~~~~i~l~--~-~~~~r~~R~~~r~~~~~--~~~-~~~~~~~~~~~~d~~~~~~ 130 (147)
T cd02020 65 K-PGIVLEGRDIGTV-------VFPDADLKIFLT--A-SPEVRAKRRAKQLQAKG--EGV-DLEEILAEIIERDERDSTR 130 (147)
T ss_pred C-CCEEEEeeeeeeE-------EcCCCCEEEEEE--C-CHHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHHhhhc
Confidence 3 3567777653110 111112234443 4 56666666655432111 123 678888887777543 344
Q ss_pred ccccCCCCCceEEeec
Q 005630 512 VYEPVDEGSYIKMIDM 527 (687)
Q Consensus 512 ~yEPl~e~~yik~in~ 527 (687)
.+.|.+...|--+||.
T Consensus 131 ~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 131 YVAPLKLAEDAIVIDT 146 (147)
T ss_pred ccccccCCCCcEEEeC
Confidence 4455554466666664
No 130
>PLN02674 adenylate kinase
Probab=98.18 E-value=3.8e-06 Score=87.45 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=83.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALA 422 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~ 422 (687)
+.-|++.|.|||||||+|+.|++++++..+++ |+. |+.... ... .+......+. ++...+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~-----GdllR~~i~~-~s~------~g~~i~~~~~~G~lvpd~iv~~l 98 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT-----GDMLRAAVAA-KTP------LGIKAKEAMDKGELVSDDLVVGI 98 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch-----hHHHHHHHhc-cCh------hhHHHHHHHHcCCccCHHHHHHH
Confidence 45688999999999999999999987665444 333 432210 000 0111111010 111111
Q ss_pred HHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhcc---C---------
Q 005630 423 MEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ---S--------- 486 (687)
Q Consensus 423 L~dl~~~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~---~--------- 486 (687)
+. +.|. ..+..+|+|+.-.+..+-+.+.++ ...+..+ .+|++.|+ ++++.+|+..|... .
T Consensus 99 v~---~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~p 174 (244)
T PLN02674 99 ID---EAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAP 174 (244)
T ss_pred HH---HHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCC
Confidence 11 1222 235679999988888888877765 3333332 34555675 67777888776321 0
Q ss_pred ------------CCCCCCCChHHHHHHHHHHHHhhhhccccCC
Q 005630 487 ------------PDYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 487 ------------pd~s~~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
+... ..++..+-..+|+..|++.-.|+-
T Consensus 175 p~~~~~~~~~g~~L~~---R~DD~~e~i~~RL~~Y~~~t~pv~ 214 (244)
T PLN02674 175 PKVPGVDDVTGEPLIQ---RKDDTAAVLKSRLEAFHKQTEPVI 214 (244)
T ss_pred CcccCcccccCCcccc---CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 0001 123345667899999988777764
No 131
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.17 E-value=2e-05 Score=77.22 Aligned_cols=26 Identities=23% Similarity=0.100 Sum_probs=23.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+|+++|.|||||||+++.|+..+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 37999999999999999999998764
No 132
>PRK13808 adenylate kinase; Provisional
Probab=98.17 E-value=4.9e-06 Score=90.18 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=77.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~L~d 425 (687)
|+|+|-|||||||+|+.|++.++...+++ |+. |..... ... .+......+ .++...++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~-----gdlLR~~i~~-~s~------~g~~~~~~~~~G~lVPdeiv~~li~- 69 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST-----GDMLRAAVAA-GTP------VGLKAKDIMASGGLVPDEVVVGIIS- 69 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc-----cHHHHHHhhc-CCh------hhHHHHHHHHcCCCCCHHHHHHHHH-
Confidence 78899999999999999999977654443 332 432110 000 000000000 011111111
Q ss_pred HHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHhhhccCCC-CCCCCChHHHHH
Q 005630 426 MISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPD-YAEEPDFEAGLQ 500 (687)
Q Consensus 426 l~~~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~-vvfIE~~c~d~eii~rrI~~r~~~~pd-~s~~~d~e~a~~ 500 (687)
..|. ......|+|+-..+.++.+.+.++ ...++. -++|++.|+ ++++.+|+..|...... -... ..+.-.+
T Consensus 70 --e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~-R~DD~~E 145 (333)
T PRK13808 70 --DRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEV-RADDTPE 145 (333)
T ss_pred --HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCcc-CCCCCHH
Confidence 1121 123458899866666777766665 333322 234555674 67778888766321000 0000 1223346
Q ss_pred HHHHHHHhhhhccccCC
Q 005630 501 DFKNRLANYEKVYEPVD 517 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl~ 517 (687)
.|.+|+..|+..-+|+-
T Consensus 146 ~i~kRL~~Y~~~t~PLl 162 (333)
T PRK13808 146 VLAKRLASYRAQTEPLV 162 (333)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 68899999988766653
No 133
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.16 E-value=8.3e-06 Score=84.21 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=63.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHH--H-----HHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR--N-----EVAALA 422 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~--~-----~vA~~~ 422 (687)
.|+-|+++|.|||||||+|+.|+++++...++++-+ +|+... .... + +......+ . ++....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdl----lr~~~~-~~t~--l----g~~i~~~~~~G~lvpd~iv~~l 73 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNI----LREEIK-AKTT--I----GKEIQKVVTSGNLVPDNLVIAI 73 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChH----HHHHhh-cCCh--H----HHHHHHHHHcCCcCCHHHHHHH
Confidence 345599999999999999999999987665554433 133211 1000 0 00000000 0 111111
Q ss_pred HH-HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 423 ME-DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 423 L~-dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
+. .+.+.+...+...|+|+...+..++..+.+... ...++...++ ++++.+|+..|.
T Consensus 74 v~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~---~~~vi~l~~~-~~~~~~Rl~~Rr 131 (229)
T PTZ00088 74 VKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN---IDLFVNIYLP-RNILIKKLLGRR 131 (229)
T ss_pred HHHHHHhhccccCceEEEecCCCCHHHHHHHHhcCC---CCEEEEEeCC-HHHHHHHHHcCc
Confidence 11 111112234677899997677777766654421 2234555666 555666666653
No 134
>PRK08233 hypothetical protein; Provisional
Probab=98.16 E-value=3.7e-05 Score=74.84 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++++|++.|.|||||||+|+.|++.|.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 358999999999999999999999875
No 135
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.15 E-value=1.7e-05 Score=79.27 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+.+|+++|.+|||||||++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999999864
No 136
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.13 E-value=0.0002 Score=70.92 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
+++|++.|.+||||||+++.|++.|...|..+.+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4789999999999999999999999987766543
No 137
>PRK13975 thymidylate kinase; Provisional
Probab=98.13 E-value=6.3e-05 Score=74.55 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=25.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+++|++.|++||||||+|+.|+++|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999984
No 138
>PRK07261 topology modulation protein; Provisional
Probab=98.12 E-value=9.9e-06 Score=79.67 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=25.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
-|+++|.|||||||+|+.|++.++...++.|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 3889999999999999999998765444443
No 139
>PRK07667 uridine kinase; Provisional
Probab=98.11 E-value=3.9e-05 Score=76.80 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=38.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+++|-++|.|||||||+|+.|++.|...|+++.+++.|+|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 55899999999999999999999999988999999999886
No 140
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.11 E-value=2.3e-05 Score=79.36 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+.+|+++|.||+|||||+++|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999999999865
No 141
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.10 E-value=1.1e-05 Score=77.89 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=27.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++|+++|.|||||||+|+.|++.|+.. +++.|++
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~ 34 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLK-----LISAGDI 34 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHH
Confidence 379999999999999999999987654 4555443
No 142
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.09 E-value=4.8e-05 Score=81.21 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=62.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
..+|+++|++||||||+++.|+. +++.. + +.. ... .+.+ +.+.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~-----~--d~~-----------------~~~---L~~~--------l~~~~ 49 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYC-----V--DNL-----------------PPS---LLPK--------LVELL 49 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeE-----E--CCc-----------------CHH---HHHH--------HHHHH
Confidence 35899999999999999999973 23211 1 111 111 1112 22222
Q ss_pred hc----CCeEEEEeCCCCC--HHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCC
Q 005630 431 HE----GGQVGIFDATNSS--RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAE 491 (687)
Q Consensus 431 ~~----~G~iVIlDAtn~~--~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~ 491 (687)
.. ....+++|..+.. ++.++.+..+.+.++.+.+|...| +.+++.+|+....+.+|...+
T Consensus 50 ~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a-~~e~L~~Rl~~~rr~RPLl~~ 115 (288)
T PRK05416 50 AQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDA-SDEVLIRRYSETRRRHPLSGD 115 (288)
T ss_pred HhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHhhcccCCCccCC
Confidence 21 3568889998763 356677777755565443333345 578888899765445676654
No 143
>PRK14526 adenylate kinase; Provisional
Probab=98.09 E-value=7.5e-06 Score=83.49 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=77.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~L~d 425 (687)
|+++|.|||||||+|+.|++.++...++ .|+. |+..... . +........+ .+++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is-----~G~llr~~~~~~-t------~~g~~i~~~~~~g~lvpd~~~~~lv~- 69 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS-----TGDLFRENILNS-T------PLGKEIKQIVENGQLVPDSITIKIVE- 69 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee-----cChHHHHhcccC-C------hhhHHHHHHHHcCccCChHHHHHHHH-
Confidence 7789999999999999999987655433 3333 4321110 0 0001111111 011111111
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccC------------C----
Q 005630 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS------------P---- 487 (687)
Q Consensus 426 l~~~L~~--~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~------------p---- 487 (687)
+.|.. ....+|+|+...+.++-+.+.++.. . ..+|++.|+ ++++.+|+..|.... |
T Consensus 70 --~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~-~--~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 143 (211)
T PRK14526 70 --DKINTIKNNDNFILDGFPRNINQAKALDKFLP-N--IKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKG 143 (211)
T ss_pred --HHHhcccccCcEEEECCCCCHHHHHHHHHhcC-C--CEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccC
Confidence 22221 2455788987777777666655422 1 234555665 677788887764210 0
Q ss_pred -------CCCCCCChHHHHHHHHHHHHhhhhccccCC
Q 005630 488 -------DYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 488 -------d~s~~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
.... ..++..+-+.+|+..|++.-+|+-
T Consensus 144 ~~~~~~~~l~~--R~DD~~e~i~~Rl~~y~~~t~pv~ 178 (211)
T PRK14526 144 ICDVCKGDLYQ--RKDDKEESLKTRLQEYKLQTKPLI 178 (211)
T ss_pred cCCCCCCeeec--cCCCCHHHHHHHHHHHHHhhhHHH
Confidence 0000 223345677899999988777764
No 144
>PRK13973 thymidylate kinase; Provisional
Probab=98.08 E-value=0.0002 Score=72.85 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+++|++-|.+||||||.++.|+++|...|+.+...
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57999999999999999999999998888777655
No 145
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.04 E-value=6.7e-05 Score=75.04 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++.+|+|+|.||||||||+++|.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 678999999999999999999988753
No 146
>PRK04182 cytidylate kinase; Provisional
Probab=98.03 E-value=6.4e-06 Score=79.96 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=25.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
++|+++|.|||||||+|+.|++.|++..++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 379999999999999999999998765443
No 147
>PRK06547 hypothetical protein; Provisional
Probab=98.03 E-value=3.5e-05 Score=76.15 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=27.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
..+.+|.++|.|||||||+|+.|++.++...+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 46789999999999999999999998654433
No 148
>PLN02459 probable adenylate kinase
Probab=98.03 E-value=4.6e-05 Score=80.09 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=64.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~ 421 (687)
+++.|++.|-|||||||+|+.|+++++...+++ |+. |+.... . ..+ .......+. ++...
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~-----gdllR~ei~~-~--t~l----g~~i~~~~~~G~lVPdeiv~~ 95 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIAT-----GDLVREEIKS-S--GPL----GAQLKEIVNQGKLVPDEIIFS 95 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeC-----cHHHHHHHhc-c--chh----HHHHHHHHHcCCccCHHHHHH
Confidence 456688899999999999999999987655443 333 442211 0 000 111111110 12222
Q ss_pred HHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 422 AMEDMISWMH----EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 422 ~L~dl~~~L~----~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
++. ..|. .....+|+|+.-.+..+-+.+..+.. + -.+|++.|+ ++++.+|+..|.
T Consensus 96 ll~---~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~--i-d~Vi~L~v~-d~~l~~Rl~gR~ 154 (261)
T PLN02459 96 LLS---KRLEAGEEEGESGFILDGFPRTVRQAEILEGVTD--I-DLVVNLKLR-EEVLVEKCLGRR 154 (261)
T ss_pred HHH---HHHhcccccCCceEEEeCCCCCHHHHHHHHhcCC--C-CEEEEEECC-HHHHHHHhhccc
Confidence 221 2222 12467999999888887777765532 2 225555676 567777777663
No 149
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.02 E-value=1.6e-05 Score=77.50 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=25.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
++|.+.|+|||||||+|+.|+++|+...++
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 368899999999999999999998865543
No 150
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.01 E-value=9.9e-05 Score=72.32 Aligned_cols=135 Identities=19% Similarity=0.299 Sum_probs=78.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~ 431 (687)
||+=++-+||||||+|.+|+.-++ |-.+..|-+... ++ . ..++.+++ -|+
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k--~~----------------~-------~f~~~~l~----~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK--RK----------------P-------KFIKAVLE----LLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC--CH----------------H-------HHHHHHHH----HHh
Confidence 466688999999999999999998 877666655221 11 1 11111111 122
Q ss_pred -cCCeEEEEeCCCCCHHHHHHHHHH---HcC-------CceEEEEEEEeCC-H----HHHHHHHHhhhccCCCCCCCCCh
Q 005630 432 -EGGQVGIFDATNSSRKRRNMLMKM---AEG-------NCKIIFLETICND-R----DIIERNIRLKIQQSPDYAEEPDF 495 (687)
Q Consensus 432 -~~G~iVIlDAtn~~~e~R~~l~el---~~~-------~~~vvfIE~~c~d-~----eii~rrI~~r~~~~pd~s~~~d~ 495 (687)
..-.+||+|=.|.....|+++.+. .+. +++++-|-..-++ . ++...|+..|.......+.. ..
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~-~~ 130 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKAD-SK 130 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecC-CC
Confidence 357899999999998888877765 222 5566666543322 2 33445555543211222211 10
Q ss_pred HHHHHHHHHHHHhhhhccccCCCC
Q 005630 496 EAGLQDFKNRLANYEKVYEPVDEG 519 (687)
Q Consensus 496 e~a~~df~~Ri~~y~~~yEPl~e~ 519 (687)
..+....-+..+.+-|||++..
T Consensus 131 --~~~~~~~Im~gFi~rfep~~~~ 152 (168)
T PF08303_consen 131 --DEKKVEGIMEGFIKRFEPVDPD 152 (168)
T ss_pred --CHHHHHHHHHHHHHhcCCCCCC
Confidence 1233444555666667888753
No 151
>PRK08118 topology modulation protein; Reviewed
Probab=97.99 E-value=2.5e-05 Score=76.63 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
-|+++|.|||||||+|++|++.++...++.|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 38999999999999999999997765555543
No 152
>PRK14529 adenylate kinase; Provisional
Probab=97.98 E-value=3.1e-05 Score=79.71 Aligned_cols=115 Identities=12% Similarity=0.190 Sum_probs=66.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMEDM 426 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~L~dl 426 (687)
|+|.|.|||||||+|+.|+++++..++++-.+ .|....+ .. +...+....+. ++...+ +
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl----lr~~i~~---~t----~lg~~i~~~i~~G~lvpdei~~~l---v 68 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAI----FREHIGG---GT----ELGKKAKEYIDRGDLVPDDITIPM---I 68 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchh----hhhhccC---CC----hHHHHHHHHHhccCcchHHHHHHH---H
Confidence 78899999999999999999988776654222 1332110 00 00111111110 111111 2
Q ss_pred HHHHhcC-CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhh
Q 005630 427 ISWMHEG-GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 427 ~~~L~~~-G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~ 483 (687)
.+.|... ....|+|+.-.+.++-+.+.++ ...+..+ .+|+..|+ ++++.+|+..|.
T Consensus 69 ~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~ 127 (223)
T PRK14529 69 LETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRR 127 (223)
T ss_pred HHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCc
Confidence 2333322 4669999999998888877765 3333222 35555675 677777887764
No 153
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.98 E-value=6.5e-05 Score=74.75 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=78.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~L~ 424 (687)
-|++.|.|||||||+|++|+++++-..+++ |++ |... ... .+...+....+ .++...++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst-----gd~~r~~~---~~~----t~lg~~~k~~i~~g~lv~d~i~~~~v~ 69 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT-----GDILRAAI---AER----TELGEEIKKYIDKGELVPDEIVNGLVK 69 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcH-----hHHhHhhh---ccC----ChHHHHHHHHHHcCCccchHHHHHHHH
Confidence 378999999999999999999966555443 333 2211 000 01111111101 012212222
Q ss_pred HHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 425 DMISWMHEG--GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 425 dl~~~L~~~--G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
.++... ...+|+|....+...-+.+..+ .+.+.+. ..+++.+++ +.+..|+..|.. ++ +...+
T Consensus 70 ---~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~-r~--------dd~~~ 136 (178)
T COG0563 70 ---ERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRV-RE--------DDNEE 136 (178)
T ss_pred ---HHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccc-cc--------cCCHH
Confidence 223322 2279999998888776666655 4444333 345556654 777777766532 11 11234
Q ss_pred HHHHHHHhhhhccccCC
Q 005630 501 DFKNRLANYEKVYEPVD 517 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl~ 517 (687)
.+.+|+..|.+.-.|+-
T Consensus 137 ~~~~R~~~y~~~~~pli 153 (178)
T COG0563 137 TVKKRLKVYHEQTAPLI 153 (178)
T ss_pred HHHHHHHHHHhcccchh
Confidence 56888898887777764
No 154
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.89 E-value=0.00012 Score=69.98 Aligned_cols=130 Identities=18% Similarity=0.296 Sum_probs=70.3
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHHH------HHHHHHHHH-H
Q 005630 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNE------VAALAMEDM-I 427 (687)
Q Consensus 356 LvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~~------vA~~~L~dl-~ 427 (687)
+.|-|||||||+|+.|+++++.. .++.++. |+.... .++.+...... +-..++-++ .
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~-----~is~~~llr~~~~~----------~s~~g~~i~~~l~~g~~vp~~~v~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV-----HISVGDLLREEIKS----------DSELGKQIQEYLDNGELVPDELVIELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHHT----------TSHHHHHHHHHHHTTSS--HHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc-----eechHHHHHHHHhh----------hhHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 57999999999999999996543 4555554 332211 11111111100 001111111 1
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHH
Q 005630 428 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (687)
Q Consensus 428 ~~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~ 503 (687)
..|. ......|+|+--.+.++-+.+.+. ...++.+ .+|.+.|+ ++.+.+|+.. + +. +.+.
T Consensus 66 ~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~-~~~~~~R~~~---------d--~~----~~i~ 129 (151)
T PF00406_consen 66 ERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCP-DETLIERLSQ---------D--NE----EVIK 129 (151)
T ss_dssp HHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT---------G--SH----HHHH
T ss_pred HHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccc-hhhhhhhccc---------C--CH----HHHH
Confidence 2222 236778999988887776666664 2233333 66677786 4566666654 1 12 3367
Q ss_pred HHHHhhhhccccC
Q 005630 504 NRLANYEKVYEPV 516 (687)
Q Consensus 504 ~Ri~~y~~~yEPl 516 (687)
+|+..|++.-+|+
T Consensus 130 ~Rl~~y~~~~~~i 142 (151)
T PF00406_consen 130 KRLEEYRENTEPI 142 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887765554
No 155
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.89 E-value=9.6e-05 Score=74.44 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++.+|.++|.+||||||+|+.|++.+. +..+.+++.|+|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 688999999999999999999999873 345566777766
No 156
>PRK15453 phosphoribulokinase; Provisional
Probab=97.88 E-value=0.00017 Score=76.65 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=39.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
++.+|+++|-|||||||+|++|++.|+..++.+.+++.|+|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5679999999999999999999999988888888999998865
No 157
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.84 E-value=0.00031 Score=69.57 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+|++.|.+||||||+++.|+++++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998653
No 158
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00036 Score=77.43 Aligned_cols=100 Identities=26% Similarity=0.341 Sum_probs=63.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhC------CCCCCCCcCCCCHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG------VNQSADFFRADNPEGMEARNEVAALA 422 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g------~~~~~~f~~~~~e~~~~~~~~vA~~~ 422 (687)
..|.+|+|+||-||||||.|.+||++|...+.++-++..|.||-.... ....-.||....+.. -.++|+.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~---Pv~Iak~a 174 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD---PVEIAKAA 174 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC---HHHHHHHH
Confidence 468999999999999999999999999999999989988888763211 111234444432210 01244444
Q ss_pred HHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHH
Q 005630 423 MEDMISWMHEG-GQVGIFDATNSSRKRRNMLMKM 455 (687)
Q Consensus 423 L~dl~~~L~~~-G~iVIlDAtn~~~e~R~~l~el 455 (687)
++ .+.+. -.++|+|.-....-.-+++.++
T Consensus 175 l~----~ak~~~~DvvIvDTAGRl~ide~Lm~El 204 (451)
T COG0541 175 LE----KAKEEGYDVVIVDTAGRLHIDEELMDEL 204 (451)
T ss_pred HH----HHHHcCCCEEEEeCCCcccccHHHHHHH
Confidence 43 22223 3677777766554444444443
No 159
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.83 E-value=0.00011 Score=73.31 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=81.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcC----ceEEehhhhHHHh-----hCC-CCCCCCcCCCCHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLK-----HGV-NQSADFFRADNPEGMEARNEVAALA 422 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~----tdv~~~gdyRr~~-----~g~-~~~~~f~~~~~e~~~~~~~~vA~~~ 422 (687)
||-++|.|||||||+|++|+..|+..++. ..++..++|.+.. .+. .....|.... .-.+..+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~-a~d~~~l~~~l~~- 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPD-AFDFDLLKEDLKA- 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGG-GBSHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCcc-ccCHHHHHHHHHH-
Confidence 68899999999999999999999988776 4455555543211 111 1111221111 1112222222222
Q ss_pred HHHHHH----------H----------HhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHh
Q 005630 423 MEDMIS----------W----------MHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (687)
Q Consensus 423 L~dl~~----------~----------L~~~G~iVIlDAtn~~-~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~ 481 (687)
+.+ + ......+||+++.+.. .+. ++.+. .+ .+||+ ++.+..+.||+.+
T Consensus 79 ---L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~l~--D~-~ifld--~~~~~~l~Rri~R 147 (194)
T PF00485_consen 79 ---LKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRDLF--DL-KIFLD--ADEDLRLERRIQR 147 (194)
T ss_dssp ---HHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGGG---SE-EEEEE--E-HHHHHHHHHHH
T ss_pred ---HhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecccc--ee-EEEec--ccHHHHHHHHhhh
Confidence 211 0 0123478899988854 222 33332 22 35766 4445567777776
Q ss_pred hhccCCCCCCCCChHHHHHHHHHHHHhhhhccccCC
Q 005630 482 KIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 482 r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
.... .+. +.+++++.+..+.+.|++.-+|-.
T Consensus 148 D~~~----rG~-~~~~~~~~~~~~~~~~~~~I~p~~ 178 (194)
T PF00485_consen 148 DVAE----RGR-SPEEVIAQYERVRPGYERYIEPQK 178 (194)
T ss_dssp HHHH----S-S--HHHHHHHHHTHHHHHHHCTGGGG
T ss_pred hccc----cCC-cceeEEEEeecCChhhhhheeccc
Confidence 5432 234 788998899888888887777754
No 160
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.82 E-value=0.0002 Score=71.03 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.+|+++|.|||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999999884
No 161
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.76 E-value=0.00016 Score=65.88 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEccCCCChHHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L 375 (687)
|+++|.|||||||||+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 162
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.70 E-value=0.00011 Score=77.50 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=37.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+|.++|.+||||||++++|++.|...++++.+++.|+|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999998898899999999866
No 163
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.69 E-value=0.00061 Score=67.34 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHH--------------
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------------- 416 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~-------------- 416 (687)
+.+|||+|-+|||||||+++|.+.+............ |..+.|.-...+|.- -+.+.+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT---R~~r~~E~~g~~y~f-vs~~~f~~~~~~~~fie~~~~~g~ 77 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT---RPPRPGEVDGVDYHF-VSKEEFERMIKAGEFIEYGEYDGN 77 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES---S-GGTTS-TTTSEEE---HHHHHHHHHTTHEEEEEEETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc---cCCcccccCCcceEE-EeechhhhhhccccEEEEeeecch
Confidence 4578999999999999999999886532111111111 332222111111210 1233333221
Q ss_pred ------HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 417 ------EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 417 ------~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
..+..+++ .|.++|+|.. .+-+..+.+.+...++|-+.++..+.+++|++++.
T Consensus 78 ~YGt~~~~i~~~~~--------~gk~~il~~~------~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~ 136 (183)
T PF00625_consen 78 YYGTSKSAIDKVLE--------EGKHCILDVD------PEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRG 136 (183)
T ss_dssp EEEEEHHHHHHHHH--------TTTEEEEEET------HHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTT
T ss_pred hhhhccchhhHhhh--------cCCcEEEEcc------HHHHHHHHhcccCceEEEEEccchHHHHHHHhccc
Confidence 11222222 6888999865 24455554445566666667788999999987653
No 164
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.66 E-value=0.00031 Score=78.75 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.+|.+|+|+|++|+||||++.+||.+|...|.++-+++.|.||
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3578999999999999999999999998888888899998887
No 165
>PLN02348 phosphoribulokinase
Probab=97.60 E-value=0.00032 Score=77.56 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcC---------------cCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG---------------HDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g---------------i~tdv~~~gdy 390 (687)
..+|++|-+.|-|||||||+|+.|+..|+..+ ..+.+++.|+|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 35789999999999999999999999997542 34567888888
No 166
>PRK13974 thymidylate kinase; Provisional
Probab=97.59 E-value=0.0017 Score=65.94 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
+.+|++.|.+||||||+++.|+++|...|
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999999997655
No 167
>PLN02924 thymidylate kinase
Probab=97.57 E-value=0.00058 Score=70.17 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=33.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.++++|++.|.+||||||+++.|+++|...|+.+..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 3568999999999999999999999999998887654
No 168
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.56 E-value=0.0012 Score=67.31 Aligned_cols=28 Identities=29% Similarity=0.147 Sum_probs=24.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
+|++-|.-||||||+++.|+++|.+.++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 5899999999999999999999876443
No 169
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.52 E-value=0.00012 Score=83.59 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=30.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++++|.+.|.+||||||+|+.|+++|++..++++.+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 457999999999999999999999998665555444
No 170
>PRK10867 signal recognition particle protein; Provisional
Probab=97.51 E-value=0.00058 Score=76.82 Aligned_cols=44 Identities=34% Similarity=0.458 Sum_probs=39.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~gdyRr 392 (687)
.+|.+|+|+|++|+||||++..||.+|... |.++-+++.|.||-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 358999999999999999999999999887 88899999988876
No 171
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0015 Score=63.92 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=95.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADN-PEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~-e~~~~~~~~vA~~~L~dl~~~ 429 (687)
|.+-++.|-.||||||+-..+...+. -...++|.|..-. +.. +... ...++ .++ ...+...+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~iA~---~i~------p~~p~~~~i~----A~r-~ai~~i~~ 64 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADEIAA---QIS------PDNPTSAAIQ----AAR-VAIDRIAR 64 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHHHhh---hcC------CCCchHHHHH----HHH-HHHHHHHH
Confidence 56888999999999998766554432 1445677665522 111 1111 11111 111 22223445
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhh
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y 509 (687)
+.+.|...+...|...+.-++.++..+..|+-+....+..+..++-.+|++.|..+.. .+. ..+.....|.+++++.
T Consensus 65 ~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GG--H~I-pED~Ir~RY~rsle~l 141 (187)
T COG4185 65 LIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGG--HDI-PEDKIRRRYRRSLELL 141 (187)
T ss_pred HHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCC--CCC-cHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999988898877777777888899999998876433 122 2234456666666665
Q ss_pred hhccccCC
Q 005630 510 EKVYEPVD 517 (687)
Q Consensus 510 ~~~yEPl~ 517 (687)
...++-.+
T Consensus 142 ~~~l~l~d 149 (187)
T COG4185 142 AQALTLAD 149 (187)
T ss_pred HHHHhhcc
Confidence 55555444
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.50 E-value=0.00084 Score=67.80 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=35.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
|.+|+|+|.+|+||||.+.+||.++...+.+.-+++.|.||-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 679999999999999999999999987788888888887753
No 173
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0014 Score=65.56 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=63.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHH--------------
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------------- 415 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~-------------- 415 (687)
++.+|+++|.+|+|||||.++|-+... ..++. .. .-|..+-|.-...+|+=-..++..+.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SV-S~---TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSV-SA---TTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEE-Ee---ccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence 578999999999999999999998762 11111 11 113322221111111111111111111
Q ss_pred -----HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 416 -----NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 416 -----~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
..-+..++. .|..||+|-.. +-++..++.-..+++|-+.|+.-+.+++|+++|..
T Consensus 78 yYGT~~~~ve~~~~--------~G~~vildId~------qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 78 YYGTSREPVEQALA--------EGKDVILDIDV------QGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred cccCcHHHHHHHHh--------cCCeEEEEEeh------HHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 112333333 69999997654 33444422111445555578999999999988764
No 174
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.0005 Score=77.44 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=39.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
.+|.+|+|+|++|+||||++..|+.+|...+.++-+++.|.||-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 36889999999999999999999999998888888888888765
No 175
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.46 E-value=0.00029 Score=70.71 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=26.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+|.++|.+||||||+++.|++ ++...+++|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 5899999999999999999998 55544444443
No 176
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0032 Score=62.86 Aligned_cols=144 Identities=16% Similarity=0.275 Sum_probs=81.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH----------H
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------E 417 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~----------~ 417 (687)
..+.+|++.|-|||||-|.+.++++.+++.. ++.|+. |+..... .++.+..... +
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftH-----lSaGdLLR~E~~~~---------gse~g~~I~~~i~~G~iVP~e 71 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTH-----LSAGDLLRAEIASA---------GSERGALIKEIIKNGDLVPVE 71 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCcee-----ecHHHHHHHHHccc---------cChHHHHHHHHHHcCCcCcHH
Confidence 3567999999999999999999999977654 555555 4422111 1222221111 2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChH
Q 005630 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE 496 (687)
Q Consensus 418 vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~-~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e 496 (687)
+...+|++...-..+.+. .++|+---..+++..+........ -++|+ .|+.+.+ -+|+..|.+.+. -.+.
T Consensus 72 i~~~LL~~am~~~~~~~~-fLIDGyPR~~~q~~~fe~~i~~~~~fvl~f--dc~ee~~-l~Rll~R~q~~~-R~DD---- 142 (195)
T KOG3079|consen 72 ITLSLLEEAMRSSGDSNG-FLIDGYPRNVDQLVEFERKIQGDPDFVLFF--DCPEETM-LKRLLHRGQSNS-RSDD---- 142 (195)
T ss_pred HHHHHHHHHHHhcCCCCe-EEecCCCCChHHHHHHHHHhcCCCCEEEEE--eCCHHHH-HHHHHhhcccCC-CCCC----
Confidence 333333322222222222 788887777788887776643222 24455 5764444 455555544322 2222
Q ss_pred HHHHHHHHHHHhhhhccccC
Q 005630 497 AGLQDFKNRLANYEKVYEPV 516 (687)
Q Consensus 497 ~a~~df~~Ri~~y~~~yEPl 516 (687)
-.+-.++|++.|.+.-.|+
T Consensus 143 -n~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 143 -NEESIKKRLETYNKSTLPV 161 (195)
T ss_pred -chHHHHHHHHHHHHcchHH
Confidence 2344678899887766665
No 177
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.45 E-value=0.00091 Score=70.88 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=38.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
.++.+|+|+|.+|+||||++..|+.++...|.++-+++.|-||.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45789999999999999999999999988888888888776654
No 178
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.44 E-value=0.00013 Score=79.35 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=70.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
.+-+|+++|+||+||||.+...-..-+...++.|++ +..++ --....+.+.
T Consensus 268 ~~eiV~~vgfp~sGks~f~a~~~~~~~y~~vn~d~l--g~~~~----------------------C~~~~~e~l~----- 318 (422)
T KOG2134|consen 268 HGEIVVAVGFPGSGKSTFAAKRVVPNGYKIVNADTL--GTPQN----------------------CLLANAEALK----- 318 (422)
T ss_pred CCcEEEEEecCCCCcchhhhhhcccCceeEeecccC--CCchh----------------------hHHHHHHHhh-----
Confidence 347999999999999999876554323333333333 11111 0011222333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.|..||+|.||+..+.|.++.+. .+.++++.++|..|+ .+..+.|+..|..
T Consensus 319 ---~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s-~eq~~hn~~fR~~ 370 (422)
T KOG2134|consen 319 ---HGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSS-VEQAQHNNRFREL 370 (422)
T ss_pred ---cccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccH-HHhhhccccchhh
Confidence 68999999999999999999998 677888999998886 6666777766654
No 179
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.43 E-value=0.0026 Score=65.31 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceE-Eehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH-FNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv-~~~gdy 390 (687)
..++.+|.+.|.+||||||+++.|+..+...+....+ ++.|+|
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4578999999999999999999999999877655545 555543
No 180
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.0015 Score=67.01 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=80.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCC----CCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN----QSADFFRADNPEGMEARNEVAALAME 424 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~----~~~~f~~~~~e~~~~~~~~vA~~~L~ 424 (687)
.++++|-+.|-+||||||+|+.|...|+-. ..-+++.|+|=+-..... ....| +....-....+.+....+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~-d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINY-DHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCc-cChhhhcHHHHHHHHHHHHc
Confidence 356899999999999999999999998743 455666666633111110 01111 11111111222222111111
Q ss_pred ------HHHHHH----------hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCC
Q 005630 425 ------DMISWM----------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 488 (687)
Q Consensus 425 ------dl~~~L----------~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd 488 (687)
=+++|- .....+||+++...... +.++++.. + -+||+ ++.+..+.||+.+....
T Consensus 83 g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d--~-kIfvd--td~D~RliRri~RD~~~--- 152 (218)
T COG0572 83 GKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMD--L-KIFVD--TDADVRLIRRIKRDVQE--- 152 (218)
T ss_pred CCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcC--E-EEEEe--CCccHHHHHHHHHHHHH---
Confidence 001111 01256788888777655 33444422 2 14665 45667777787765442
Q ss_pred CCCCCChHHHHHHHHH-HHHhhhhccccCC
Q 005630 489 YAEEPDFEAGLQDFKN-RLANYEKVYEPVD 517 (687)
Q Consensus 489 ~s~~~d~e~a~~df~~-Ri~~y~~~yEPl~ 517 (687)
.+. +.+..++.|.. .-++|++.-||.-
T Consensus 153 -rg~-~~e~vi~qy~~~vkp~~~~fIeptk 180 (218)
T COG0572 153 -RGR-DLESVIEQYVKTVRPMYEQFIEPTK 180 (218)
T ss_pred -hCC-CHHHHHHHHHHhhChhhhhccCccc
Confidence 234 77888777774 3355554445443
No 181
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.00059 Score=70.94 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=81.9
Q ss_pred hhHHHHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehhhhHHHhhCCCC-----C-------
Q 005630 334 VAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRRLKHGVNQ-----S------- 400 (687)
Q Consensus 334 ~a~a~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~gdyRr~~~g~~~-----~------- 400 (687)
+|..-+..++.. +...|++|++.|-||.||||+|..||++|+-. .+.||. .|..+.+.-. .
T Consensus 73 ~a~rY~lwR~ir-~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~-----IREvlR~ii~~~l~PtLh~Ssy~ 146 (299)
T COG2074 73 VAKRYLLWRRIR-KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDS-----IREVLRKIISPELLPTLHTSSYD 146 (299)
T ss_pred HHHHHHHHHHHh-ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchH-----HHHHHHHhCCHHhcchhhHhHHH
Confidence 555556666553 45679999999999999999999999997632 233443 3664432110 0
Q ss_pred ----CCCcCCCC--HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHcCCceEEEEEEEeCCHH
Q 005630 401 ----ADFFRADN--PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRR-NMLMKMAEGNCKIIFLETICNDRD 473 (687)
Q Consensus 401 ----~~f~~~~~--e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R-~~l~el~~~~~~vvfIE~~c~d~e 473 (687)
...-...+ -++|....+...-.++.++.-...+|..+|+.++..-+..- .... +..++..-+...|++
T Consensus 147 Awkalr~~~~~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~-----~~n~~~~~l~i~dee 221 (299)
T COG2074 147 AWKALRDPTDENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL-----GNNVFMFMLYIADEE 221 (299)
T ss_pred HHHHhcCCCCCcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh-----ccceEEEEEEeCCHH
Confidence 00000111 12233332222222232222223389999999999887642 2222 122334445678999
Q ss_pred HHHHHHHhhhc
Q 005630 474 IIERNIRLKIQ 484 (687)
Q Consensus 474 ii~rrI~~r~~ 484 (687)
+.++|+..|.+
T Consensus 222 ~Hr~RF~~R~~ 232 (299)
T COG2074 222 LHRERFYDRIR 232 (299)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 182
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.41 E-value=0.0007 Score=68.14 Aligned_cols=34 Identities=24% Similarity=0.104 Sum_probs=28.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++|.++|.+||||||+|+.|++.++...+++|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 3799999999999999999999877766666554
No 183
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.37 E-value=0.0008 Score=66.81 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=25.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|.++|-+||||||+|+.|++..+...+++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 488999999999999999998754544444444
No 184
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00091 Score=73.09 Aligned_cols=104 Identities=21% Similarity=0.312 Sum_probs=70.6
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhC------CCCCCCCcCCCCHHHHHHHHHHH
Q 005630 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG------VNQSADFFRADNPEGMEARNEVA 419 (687)
Q Consensus 346 ~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g------~~~~~~f~~~~~e~~~~~~~~vA 419 (687)
+...+|-||+++||-|+||||.+-+||.|+...|.++-++..|.||--.+. .-..-.||..+++.- -..+|
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d---pv~ia 172 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD---PVKIA 172 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---hHHHH
Confidence 346789999999999999999999999999999999999999988752110 001122333332211 11333
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Q 005630 420 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM 455 (687)
Q Consensus 420 ~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el 455 (687)
.+. +..|-.++-.++|+|.....+..-.++.++
T Consensus 173 ~eg---v~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 173 SEG---VDRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred HHH---HHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 333 335556677888888877776666666666
No 185
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.012 Score=60.11 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++++|++-|.=||||||.++.|.++|...|+++...
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999999999998865544
No 186
>PTZ00301 uridine kinase; Provisional
Probab=97.34 E-value=0.0022 Score=65.47 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=77.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CcC-ceEEehhhhHHHhhCCCC-CCCCcCCCCHHHHH--HHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHD-TKHFNVGKYRRLKHGVNQ-SADFFRADNPEGME--ARNEVAALAMED 425 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~-tdv~~~gdyRr~~~g~~~-~~~f~~~~~e~~~~--~~~~vA~~~L~d 425 (687)
.++|-+.|-|||||||+|++|++.|... +.. +.++..|+|-+-...... ..+..+-+...++. .+.+....+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4789999999999999999999888532 333 336666777331111100 01111222222211 122222111110
Q ss_pred -H-----HHHHh----------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCC
Q 005630 426 -M-----ISWMH----------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 489 (687)
Q Consensus 426 -l-----~~~L~----------~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~ 489 (687)
. ++|-. ....++|+++.+.... ..++++. ++ .+||+ |+.+..+.||+.+....
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l~--D~-~ifvd--~~~d~~~~Rr~~Rd~~~---- 151 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNEM--DC-LIFVD--TPLDICLIRRAKRDMRE---- 151 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHhC--CE-EEEEe--CChhHHHHHHHhhhHHh----
Confidence 0 01110 1246888898887311 2333432 22 25665 66666667777554332
Q ss_pred CCCCChHHHHHHHHHHHH-hhhhccccCC
Q 005630 490 AEEPDFEAGLQDFKNRLA-NYEKVYEPVD 517 (687)
Q Consensus 490 s~~~d~e~a~~df~~Ri~-~y~~~yEPl~ 517 (687)
.+. +.+.+++.+.++.. .+.+.-+|..
T Consensus 152 rG~-~~e~v~~~~~~~v~~~~~~~I~p~k 179 (210)
T PTZ00301 152 RGR-TFESVIEQYEATVRPMYYAYVEPSK 179 (210)
T ss_pred cCC-CHHHHHHHHHHhhcccHHHHcCccc
Confidence 233 67777776766543 3333334443
No 187
>PLN02842 nucleotide kinase
Probab=97.34 E-value=0.002 Score=73.64 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.7
Q ss_pred EEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 355 VLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 355 vLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
++.|.|||||||+|+.|+++++...++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs 27 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHIS 27 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999998654443
No 188
>PRK07933 thymidylate kinase; Validated
Probab=97.33 E-value=0.01 Score=60.55 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++|++-|.-||||||+++.|+++|...|+++...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3799999999999999999999999888766544
No 189
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.30 E-value=0.0015 Score=73.45 Aligned_cols=44 Identities=34% Similarity=0.472 Sum_probs=38.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdyRr 392 (687)
.+|.+|+|+|++|+||||+|..||.+|. ..|.++-+++.|.||-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999999986 4688888898888875
No 190
>PRK13976 thymidylate kinase; Provisional
Probab=97.29 E-value=0.0086 Score=61.11 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=25.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
++|++-|.-||||||+++.|+++|...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 379999999999999999999999875
No 191
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.28 E-value=0.0033 Score=61.22 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=35.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+++++|.||+||||+++.|+..+...+.++-+++.|.+|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 7899999999999999999999988888888888776653
No 192
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.27 E-value=0.003 Score=63.00 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
+|.++|.+||||||+|+.|...+ .+..+.+++.|+|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999987 34456677777764
No 193
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.27 E-value=0.025 Score=55.80 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 356 LVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 356 LvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
+=|+.||||||+++.|+++|...+++
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 35999999999999999999999987
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=97.26 E-value=0.0017 Score=70.88 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=38.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
.+|.+|+|+|.||+||||++.+|+.+|...+.++-+++.|.||.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35889999999999999999999999988888777777776764
No 195
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.003 Score=62.23 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+++++++|.||+||||+.+.+.+.| +...++|-|++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHH
Confidence 6899999999999999999999887 55566776766
No 196
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.23 E-value=0.00037 Score=58.37 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=25.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|+++|.|||||||+|+.|++.| .+.+..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 47899999999999999999998 34455544
No 197
>PLN02165 adenylate isopentenyltransferase
Probab=97.22 E-value=0.0027 Score=69.04 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=29.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
.++.+|+++|.+|||||+||..|++.+++..+++|.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 345589999999999999999999998765555553
No 198
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.19 E-value=0.0063 Score=61.38 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=30.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++.+|.++|.+||||||+++.|+..+.. ..+.++..|+|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4679999999999999999999988763 23445555554
No 199
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.17 E-value=0.00099 Score=65.82 Aligned_cols=31 Identities=29% Similarity=0.186 Sum_probs=24.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
+|.++|.|||||||+|+.|++ ++...+++|.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 488999999999999999998 4544333443
No 200
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.15 E-value=0.0029 Score=68.62 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=37.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.++.+|.++|.+|+||||++..|+.++...+.++-+++.|-||
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3578999999999999999999999998778788788777665
No 201
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.14 E-value=0.00086 Score=68.24 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=30.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
.|++|.++|-+||||||+++.|++.++...+++|.+.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~ 41 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTIS 41 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHH
Confidence 4789999999999999999999988776666666553
No 202
>PRK09169 hypothetical protein; Validated
Probab=97.06 E-value=0.0012 Score=84.60 Aligned_cols=139 Identities=12% Similarity=-0.042 Sum_probs=82.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
..-|+|+|++|+|||||++.|+..|++..+++|....... +... ..+|...+ .++.++ ...+.++.
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~-----GrkI-~rIFa~eG--~FRe~E---aa~V~Dll--- 2175 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI-----GKKI-ARIQALRG--LSPEQA---AARVRDAL--- 2175 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh-----CCCH-HHHHHhcC--chHHHH---HHHHHHHh---
Confidence 4579999999999999999999999998888876643222 2111 12333333 223222 22222222
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCCh--------HHHHHHH
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF--------EAGLQDF 502 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~--------e~a~~df 502 (687)
. ..+|+..-.......+....+.+.|+ +||+. .+.+.+.+|+.+..+ +|...+. +. ++..+.+
T Consensus 2176 -r--~~vVLSTGGGav~~~enr~~L~~~Gl-vV~L~---an~~tl~~Rty~g~N-RPLL~~~-~~~FEiQFHT~esl~Lk 2246 (2316)
T PRK09169 2176 -R--WEVVLPAEGFGAAVEQARQALGAKGL-RVMRI---NNGFAAPDTTYAGLN-VNLRTAA-GLDFEIQFHTADSLRTK 2246 (2316)
T ss_pred -c--CCeEEeCCCCcccCHHHHHHHHHCCE-EEEEE---CCHHHHHHHhccCCC-CccccCC-CCccchhccHHHHHHHH
Confidence 1 24455444444444444444466664 55554 467888899976643 6766654 44 5666777
Q ss_pred HHHHHhhhhc
Q 005630 503 KNRLANYEKV 512 (687)
Q Consensus 503 ~~Ri~~y~~~ 512 (687)
.+|...|++.
T Consensus 2247 ~eRhpLYEqv 2256 (2316)
T PRK09169 2247 NKTHKLYEKL 2256 (2316)
T ss_pred HHhHHHHHHh
Confidence 7788888653
No 203
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.05 E-value=0.0029 Score=65.21 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+++|.+.|.|||||||+|+.|+++|+...+++..+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence 57999999999999999999999998766665553
No 204
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0064 Score=62.00 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
..+|++-|+=|+||||||++|+++|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999987
No 205
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.03 E-value=0.0012 Score=62.76 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+|+++|.+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998754
No 206
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.02 E-value=0.0078 Score=61.18 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=27.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.++|-+||.|||||||+|+.+++ ++...+++|.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v 35 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV 35 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence 47899999999999999999998 55554444443
No 207
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.00 E-value=0.0019 Score=64.85 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=70.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCc-eEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH---
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI--- 427 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~t-dv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~--- 427 (687)
.++.+.|+|++|||++.+.|.-.-.++.++. ..++-|+++- ...+..+. -+.+.+. +.+.....|+..+-
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm-daTpSaD~-a~keqRg----r~~~~iEk~ISaiqedt 75 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM-DATPSADK-AAKEQRG----RFECHIEKCISAIQEDT 75 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh-hcCcchhh-hHHHHhc----hHHHHHHHHHHHHhccc
Confidence 3788999999999999998876555443332 2244466642 11111111 1111222 22333444333222
Q ss_pred HH------------HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 005630 428 SW------------MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (687)
Q Consensus 428 ~~------------L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI 479 (687)
.| .+.+-.+.++|..|..+.+|..+.++ +.+|+.+=.|-....-.+.+++|-
T Consensus 76 dwppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS 140 (291)
T KOG4622|consen 76 DWPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANS 140 (291)
T ss_pred CCCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcc
Confidence 11 11224588899999999999999999 777876644443344456676664
No 208
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.98 E-value=0.0036 Score=57.06 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=25.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
|+++|.||+||||+++.|+++++ .....++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccc
Confidence 68999999999999999999964 444455543
No 209
>PRK07429 phosphoribulokinase; Provisional
Probab=96.97 E-value=0.0051 Score=66.95 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
..++++|-++|-+||||||+++.|++.|+... ..+++.|+|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence 35789999999999999999999999887432 234555555
No 210
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.97 E-value=0.0037 Score=64.15 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh--cCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~gdy 390 (687)
+|-+.|-+||||||+|+.|+..|.. .+.++.+++.|+|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4678999999999999999999874 3455666666666
No 211
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.95 E-value=0.0065 Score=59.35 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=75.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCcCceEEehhhhHHHhh--CCCCCCCCcCC-----CCHH----HHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRRLKH--GVNQSADFFRA-----DNPE----GMEARN 416 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~gdyRr~~~--g~~~~~~f~~~-----~~e~----~~~~~~ 416 (687)
+..+|+|-|-|-+|||.||.+++.... |..+-.|.| =..+- ......+|.-+ +..+ .+.-+.
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f-----~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLF-----WEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHH-----HHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 456999999999999999999998764 665555544 11110 00111112111 1111 112223
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHh
Q 005630 417 EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (687)
Q Consensus 417 ~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~ 481 (687)
+.+..-..-.+.-+.++|..+|.|+.-.+++..-...... .++.|.|+=+.|++++..+|+.++
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l-~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL-EGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH-hCCceEEEEeeccHHHHHHHHhhc
Confidence 3333333333344566899999999988866543333332 378899999999988887777763
No 212
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.95 E-value=0.0042 Score=67.72 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=36.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
..++++|.++|.||+||||+...|...+...+.++-++..|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 347899999999999999999999999998888887776653
No 213
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.94 E-value=0.0012 Score=72.80 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|.+|+++|++||||||++.+|.+.|... +++-++
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 68999999999999999999999999876 666665
No 214
>PHA03132 thymidine kinase; Provisional
Probab=96.91 E-value=0.05 Score=63.30 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=23.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.++|++-|..|+||||+++.|+++|
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999998
No 215
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=96.85 E-value=0.0014 Score=67.37 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=47.3
Q ss_pred cEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccC--------CCCEEEecCcHHHHHhhhcc
Q 005630 561 PILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSE--------RAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~--------~~~~V~tSpl~Ra~qTA~~i 626 (687)
-.+++|||+..- ..||+.|++|+..+|++|+++.... ..-.+++|+..||+|||+.+
T Consensus 5 v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 5 VQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 467899999852 3599999999999999998876432 23478999999999999998
No 216
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.81 E-value=0.019 Score=61.16 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=62.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
+||++||+||||||..+.|+. +++.. +|.. -. ..+.+.+..+... --..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~c-------vDNl-----------------P~---~Ll~~l~~~~~~~---~~~~ 51 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYC-------VDNL-----------------PP---SLLPQLIELLAQS---NSKI 51 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeE-------EcCC-----------------cH---HHHHHHHHHHHhc---CCCC
Confidence 799999999999999999885 34432 2211 11 1122222221110 0001
Q ss_pred CCeEEEEeCCCCCH--HHHHHHHHHHc--CCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHH
Q 005630 433 GGQVGIFDATNSSR--KRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (687)
Q Consensus 433 ~G~iVIlDAtn~~~--e~R~~l~el~~--~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (687)
....+++|.-+..- +--+.+.++.+ ..++++|+| |+++.+++|--+.|. ..|.-.+. ...++++.=++.++
T Consensus 52 ~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLd--A~d~~LirRy~eTRR-~HPL~~~~-~~le~I~~Er~~L~ 126 (284)
T PF03668_consen 52 EKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLD--ASDEVLIRRYSETRR-RHPLSSDG-SLLEAIEKERELLE 126 (284)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEE--CChHHHHHHHHhccC-CCCCCCCC-CcHHHHHHHHHHHH
Confidence 25577788877652 22344444533 456677776 565555555544444 36765554 33444444333333
No 217
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0062 Score=60.33 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
++|+++|-||.||||+|++|+ .|++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCc
Confidence 379999999999999999999 65543
No 218
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.73 E-value=0.011 Score=68.66 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 347 ~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
...++++|.+.|-+||||||+|+.|+..+. .+-++..|+|.
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~ 101 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYN 101 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEccee
Confidence 344679999999999999999999998763 24466667664
No 219
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.0086 Score=56.06 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=30.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+++++|-||+||||++..++..+...+..+..++.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 4789999999999999999999876666666665543
No 220
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0079 Score=66.98 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=37.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.+|.+|.|+|.+|+||||++.+|+..|...+.++-+++.|.||
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3567899999999999999999999998788888888888776
No 221
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.66 E-value=0.0036 Score=59.10 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=42.4
Q ss_pred HHHHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 336 AAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 336 ~a~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
..++.+....+.+.+|+|+-+.|-||+|||++|+.||+.|-..|.++..+
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 34445555666788999999999999999999999999998888888876
No 222
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.66 E-value=0.021 Score=58.60 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
+++|.+.|.+||||||+|+.|+++|+...+++.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 468999999999999999999999886555443
No 223
>PLN02772 guanylate kinase
Probab=96.63 E-value=0.019 Score=63.85 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
...+||++|.+|+||+||.++|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 556999999999999999999988653
No 224
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.62 E-value=0.031 Score=56.68 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=63.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC---------------------------CCCc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS---------------------------ADFF 404 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~---------------------------~~f~ 404 (687)
++|=++|--||||||+++.+. .++...+++|++- |+ ...++.. .-|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~va----R~-vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVA----RE-VVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHH----HH-HhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 478899999999999999998 5555555555542 22 2111110 1121
Q ss_pred CCCCHHHHHHH--HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 005630 405 RADNPEGMEAR--NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 479 (687)
Q Consensus 405 ~~~~e~~~~~~--~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI 479 (687)
++........+ =.+..++++++..++..+-.++|+|..- +++..-..+-...+-++|+.+..++|-+
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--------LFE~~~~~~~~~tvvV~cd~~~Ql~Rl~ 144 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--------LFEAKLLKICHKTVVVTCDEELQLERLV 144 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--------HHHHhHHhheeeEEEEEECcHHHHHHHH
Confidence 11111111111 1467778888888888888899998754 3333100111223445887555555444
No 225
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.014 Score=63.13 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=65.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
..+|.+|+++|..|+||||...+||.+|...|.++-+--.|.+|-. +.+++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa----------------------------AiEQL~ 187 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA----------------------------AIEQLE 187 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH----------------------------HHHHHH
Confidence 4579999999999999999999999999999998888777777541 445555
Q ss_pred HHHhcCCeEEEEeCCCCCHH--HHHHHHHHHcCCceEEEEE
Q 005630 428 SWMHEGGQVGIFDATNSSRK--RRNMLMKMAEGNCKIIFLE 466 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e--~R~~l~el~~~~~~vvfIE 466 (687)
.|-.+.|..+|--.....+. -.+.+......++.+++++
T Consensus 188 ~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliD 228 (340)
T COG0552 188 VWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLID 228 (340)
T ss_pred HHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 66666677777633344433 2333333455677777776
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.62 E-value=0.0043 Score=55.55 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=27.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
-.++++|-||+||||+++.|+..+...+.....++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999999876653344443
No 227
>PRK05439 pantothenate kinase; Provisional
Probab=96.60 E-value=0.0028 Score=68.50 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=37.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhh--cCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~gdy 390 (687)
...|++|-++|-|||||||+|+.|+..|.. .+.++.++..|+|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 457899999999999999999999998874 3567888888877
No 228
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.017 Score=56.16 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
=|+++|-||+||||+|.+||..++... ++.+++-|
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~-----i~isd~vk 43 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEY-----IEISDLVK 43 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCce-----EehhhHHh
Confidence 589999999999999999998866433 45566644
No 229
>PHA00729 NTP-binding motif containing protein
Probab=96.56 E-value=0.021 Score=59.04 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
..-|+++|-||+||||+|.+|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999875
No 230
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.48 E-value=0.002 Score=64.76 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+|.++|.|||||||+|+.|++.+. .+.+++.|+|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 578999999999999999999863 2445655655
No 231
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.46 E-value=0.0055 Score=61.18 Aligned_cols=133 Identities=13% Similarity=0.146 Sum_probs=67.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC----------CCCcCCC--------------
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRAD-------------- 407 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~----------~~f~~~~-------------- 407 (687)
++|-++|-.||||||+++.|++ ++... ++.|++-+.+...+.. ..++.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~v-----idaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPV-----IDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EE-----EEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCE-----ECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 5899999999999999999998 55544 4444443322221110 1121111
Q ss_pred CHHHHHHHHHHHHH-HHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 408 NPEGMEARNEVAAL-AMEDMISWMHEG--GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 408 ~e~~~~~~~~vA~~-~L~dl~~~L~~~--G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
+.+..+.++.+..- ..+.+..++... ...+|+|+.-.....-. .... .+++| .| ++++..+|+..|..
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~-----~~~D-~vi~V--~a-~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLE-----KLCD-EVIVV--YA-PEEIRIKRLMERDG 145 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGG-----GGSS-EEEEE--E---HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHh-----hhhc-eEEEE--EC-CHHHHHHHHHhhCC
Confidence 23333444444332 223344455543 26888888876643111 1111 23343 45 46777777776642
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhhh
Q 005630 485 QSPDYAEEPDFEAGLQDFKNRLANYEK 511 (687)
Q Consensus 485 ~~pd~s~~~d~e~a~~df~~Ri~~y~~ 511 (687)
. +.+. +.+|+..|..
T Consensus 146 -------~-~~~~----~~~ri~~Q~~ 160 (180)
T PF01121_consen 146 -------L-SEEE----AEARIASQMP 160 (180)
T ss_dssp -------S-THHH----HHHHHHTS--
T ss_pred -------C-cHHH----HHHHHHhCCC
Confidence 2 4443 4666666643
No 232
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.44 E-value=0.016 Score=61.57 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=27.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+|.++|-+||||||+++.|+..|...+ ..++..|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 477899999999999999998876443 335555655
No 233
>PLN02840 tRNA dimethylallyltransferase
Probab=96.42 E-value=0.0048 Score=69.07 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
..+.+|+++|.+||||||+|..|++.++...++.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 356689999999999999999999998765555554
No 234
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.40 E-value=0.0059 Score=65.93 Aligned_cols=35 Identities=31% Similarity=0.278 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
.+.+|+++|.+|||||++|..|++.++...+++|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 45799999999999999999999997655444444
No 235
>CHL00181 cbbX CbbX; Provisional
Probab=96.38 E-value=0.092 Score=56.18 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
.+.-|+|.|-||+||||+|+.+++.+...|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3556899999999999999999999876554
No 236
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.32 E-value=0.016 Score=58.65 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=25.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++|.++|-+||||||+++.|+. ++.. +++.|+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~-----vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFL-----IVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCe-----EEeCcHH
Confidence 4799999999999999999996 3433 4555544
No 237
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.27 E-value=0.059 Score=54.50 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
...+++++|-||+||||+|.+++..+...+.++-.++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56799999999999999999999988766666666644
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.012 Score=66.07 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=35.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH-hhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L-~~~gi~tdv~~~gdyRr 392 (687)
++.+|+++|.+|+||||++.+|+..+ ...|.++-+++.|.||-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46799999999999999999999765 45677787888888765
No 239
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.25 E-value=0.012 Score=58.18 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=22.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+|+++|-|||||||+|..|+..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999998865
No 240
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.064 Score=63.29 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999999874
No 241
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.021 Score=63.35 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
++.+|+++|..|+||||++..|+.++...+.++-+++.|.||-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4679999999999999999999999877788888898888854
No 242
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.23 E-value=0.033 Score=56.24 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=22.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
+|.++|-+||||||+++.|++. +...+++|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-g~~~i~~D 30 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-GAFGISAD 30 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-CCEEEecc
Confidence 5789999999999999999753 43333333
No 243
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.035 Score=66.27 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=70.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEeh-hhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
-+-.++|+|-+|+||||+|+.|++.|... +....-... ..-|+...+...+....+......+..+.++... +.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~----a~ 112 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER----AV 112 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHH----HH
Confidence 35678899999999999999999998743 111100000 0012222221111101111111222222222221 11
Q ss_pred HH-HhcCCeEEEEeCCCCCH-HH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHH
Q 005630 428 SW-MHEGGQVGIFDATNSSR-KR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (687)
Q Consensus 428 ~~-L~~~G~iVIlDAtn~~~-e~-R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (687)
.. ......++|||-..... .. ..+++.+.+..-.++||- .|++...|-.-|+-|.. .=+++.. ..++. ..+++
T Consensus 113 ~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL-aTtd~~KIp~TIrSRCq-~f~Fk~L-s~eeI-v~~L~ 188 (830)
T PRK07003 113 YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL-ATTDPQKIPVTVLSRCL-QFNLKQM-PAGHI-VSHLE 188 (830)
T ss_pred hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE-EECChhhccchhhhheE-EEecCCc-CHHHH-HHHHH
Confidence 11 12236799999876553 33 334444444322344543 45666655555665554 3445554 44444 34444
Q ss_pred HHHh
Q 005630 505 RLAN 508 (687)
Q Consensus 505 Ri~~ 508 (687)
++..
T Consensus 189 ~Il~ 192 (830)
T PRK07003 189 RILG 192 (830)
T ss_pred HHHH
Confidence 4433
No 244
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.22 E-value=0.016 Score=50.17 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=44.8
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEe
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i~ 96 (687)
.|+|++.||. ...+.|.|+-. +|+ .++|++...+.|++++.+++ ...+|||++-
T Consensus 3 ~vtf~~~ap~---a~~V~v~G~fn---~W~---~~~m~~~~~G~w~~~~~l~~--G~y~Ykf~vd 56 (82)
T cd02861 3 PVVFAYRGPE---ADSVYLAGSFN---NWN---AIPMEREGDGLWVVTVELRP--GRYEYKFVVD 56 (82)
T ss_pred cEEEEEECCC---CCEEEEEeECC---CCC---cccCEECCCCcEEEEEeCCC--CcEEEEEEEC
Confidence 5899999994 37899998765 787 68999988899999998775 4579999984
No 245
>PLN02422 dephospho-CoA kinase
Probab=96.22 E-value=0.04 Score=57.26 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=24.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
+|.++|-+||||||+++.|++ ++...+++|.
T Consensus 3 ~igltG~igsGKstv~~~l~~-~g~~~idaD~ 33 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-SGIPVVDADK 33 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehhH
Confidence 799999999999999999994 4444444443
No 246
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.016 Score=63.88 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=52.5
Q ss_pred ccccccccccCCCCCccchhhHHHHhhhhcCCCCCccE-EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHH
Q 005630 315 IDLKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (687)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~a~a~l~~~~~~~~~~~~~-lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~ 393 (687)
++|.++..+++-+.|+ +.-+-+..+++-- -.+|| -|+|+|.||+|||-||++++-..+ +..||+.-- .
T Consensus 212 ~DIagl~~AK~lL~EA---VvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSss--t 280 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEA---VVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSS--T 280 (491)
T ss_pred HhhcchHHHHHHHHHH---HhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechh--h
Confidence 4677776666655442 3333333333321 23455 699999999999999999998754 445554110 0
Q ss_pred hhCCCCCCCCcCCCCHHHHHHHHHHHHH
Q 005630 394 KHGVNQSADFFRADNPEGMEARNEVAAL 421 (687)
Q Consensus 394 ~~g~~~~~~f~~~~~e~~~~~~~~vA~~ 421 (687)
+ ..=++.+.++.++.+-++|+.
T Consensus 281 l------tSKwRGeSEKlvRlLFemARf 302 (491)
T KOG0738|consen 281 L------TSKWRGESEKLVRLLFEMARF 302 (491)
T ss_pred h------hhhhccchHHHHHHHHHHHHH
Confidence 0 001334566667777777664
No 247
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.18 E-value=0.037 Score=57.99 Aligned_cols=34 Identities=24% Similarity=0.078 Sum_probs=27.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++|-++|-.||||||+++.|.+.++...+++|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence 4799999999999999999998766555555544
No 248
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.071 Score=60.89 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=71.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCc----CceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH----DTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi----~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~d 425 (687)
-+-.++|+|-||+||||+|+.|++.|.-... .+... ..-+....+...+-...+.....++..+.++...+..
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~- 115 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF- 115 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh-
Confidence 3457999999999999999999999864311 11111 0012222222111111121111122222222111100
Q ss_pred HHHHHhcCCeEEEEeCCCCC-HHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHH
Q 005630 426 MISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (687)
Q Consensus 426 l~~~L~~~G~iVIlDAtn~~-~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~ 503 (687)
.-......++|+|-...- .+.-+.+... .+....++||= .++....+...|.-|.. .=++... +.++ +..+.
T Consensus 116 --~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFIL-aTte~~kI~~TI~SRCq-~~~f~~l-s~~~-i~~~L 189 (484)
T PRK14956 116 --APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFIL-ATTEFHKIPETILSRCQ-DFIFKKV-PLSV-LQDYS 189 (484)
T ss_pred --hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEe-ecCChhhccHHHHhhhh-eeeecCC-CHHH-HHHHH
Confidence 001122469999977655 3333443333 44344566663 45556666666766643 2344444 3333 34555
Q ss_pred HHHHhh
Q 005630 504 NRLANY 509 (687)
Q Consensus 504 ~Ri~~y 509 (687)
+++...
T Consensus 190 ~~i~~~ 195 (484)
T PRK14956 190 EKLCKI 195 (484)
T ss_pred HHHHHH
Confidence 555433
No 249
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.13 E-value=0.033 Score=56.19 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.+..|+++|-||+||||+|+.+++++...+.+...++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 456899999999999999999999987666666556543
No 250
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.12 E-value=0.043 Score=49.67 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=27.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
...++++|-||+|||++++.+++.+...+.....++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 447889999999999999999999864444444443
No 251
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.12 E-value=0.091 Score=53.44 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=32.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
....++.++|.||+|||++|.+++......+.++..++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567999999999999999999998876666666666554
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.11 E-value=0.061 Score=55.63 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
.++++|-||+||||++++++..+...+.++..+..++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 6899999999999999999999887777666665543
No 253
>PRK13768 GTPase; Provisional
Probab=96.10 E-value=0.011 Score=61.86 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+++|++.|.+|+||||++..++..+...|.++-+++.|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 46899999999999999999999998889888888764
No 254
>PRK05973 replicative DNA helicase; Provisional
Probab=96.10 E-value=0.0063 Score=63.37 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+.-++++.|-||+|||++|-.++......|.++-.|+..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 456899999999999999999998776667777666543
No 255
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.06 E-value=0.018 Score=64.20 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=25.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.|.++|.+||||||+|+.|++ ++...+++|.+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 589999999999999999997 56555555544
No 256
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.01 E-value=0.09 Score=53.79 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~g 388 (687)
+.-+++++|.||+|||+++..++..+... +.++-.|+.+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 45699999999999999999998887665 7777777643
No 257
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.99 E-value=0.019 Score=55.52 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|-||+|||||++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 258
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.1 Score=58.30 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+-.++|+|.||+||||+|+.+++.|..
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567999999999999999999999865
No 259
>PRK08727 hypothetical protein; Validated
Probab=95.96 E-value=0.086 Score=54.46 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.|+++|-+|+|||+++++++..+...+.++..+...
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 499999999999999999999988777777666543
No 260
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.095 Score=61.82 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4568899999999999999999999874
No 261
>PLN02796 D-glycerate 3-kinase
Probab=95.94 E-value=0.0082 Score=65.67 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=34.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+|++|.++|.+||||||+++.|...+...+..+-.+..|++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 478999999999999999999999998766655555655544
No 262
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.94 E-value=0.071 Score=55.82 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
..-+++.|-||+||||+|+.+++.+...+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 45688999999999999999999886544
No 263
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.92 E-value=0.022 Score=58.90 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
=++|.|.||.||||||+.||+.++.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred eEEEECCCccchhHHHHHHHhccCC
Confidence 5899999999999999999998653
No 264
>PRK12377 putative replication protein; Provisional
Probab=95.91 E-value=0.098 Score=54.94 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=34.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.-++|.|-||+|||+||.+|+..+...|..+..++..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 4789999999999999999999999888888777665553
No 265
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.052 Score=60.50 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh----cCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW----LGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~----~gi~tdv~~~gdyRr 392 (687)
.+|.+|+++|..|+||||++.+||.++.. .+.++-+++.|.||-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 35789999999999999999999998863 367788888888864
No 266
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.84 E-value=0.012 Score=58.54 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=30.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+.+|.++|.+||||||+.+.|.+.|...|+++-++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 456899999999999999999999998777766555
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.84 E-value=0.01 Score=63.21 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=36.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-C-cCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-g-i~tdv~~~gdyR 391 (687)
++.+|+|+|.+|+||||++.+|+.++... | .++-+++.|.||
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56799999999999999999999998765 4 788888877775
No 268
>PF13173 AAA_14: AAA domain
Probab=95.83 E-value=0.066 Score=49.80 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=49.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~ 431 (687)
.++++.|..|+||||+++++++.+. ..-+.-.++.++.+... ... .++....++ ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~-----------------~~~-~~~~~~~~~----~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRR-----------------LAD-PDLLEYFLE----LIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHH-----------------Hhh-hhhHHHHHH----hhc
Confidence 4899999999999999999998866 12222233333332200 000 001111111 122
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHc
Q 005630 432 EGGQVGIFDATNSSRKRRNMLMKMAE 457 (687)
Q Consensus 432 ~~G~iVIlDAtn~~~e~R~~l~el~~ 457 (687)
.+...+++|-....+.....++.+.+
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d 85 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVD 85 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHH
Confidence 25678999999888888788887733
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=95.81 E-value=0.051 Score=55.98 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=29.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
.++++|-||+|||||+++++..+...+.++..+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 68999999999999999999998777766655544
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.0084 Score=58.88 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=63.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHH--hhC-----CC-CC------CCCcCCC-CH--HHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHG-----VN-QS------ADFFRAD-NP--EGME 413 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~--~~g-----~~-~~------~~f~~~~-~e--~~~~ 413 (687)
++=|.++|.||+||||++.+|+..|...|++.-=|-..+.|+- +.| +. .. .++...- .. -..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 4568999999999999999999999988766554544444441 111 00 11 1111110 00 0123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCC----HHHHHHHHHHHcCCceEEE
Q 005630 414 ARNEVAALAMEDMISWMHEGGQVGIFDATNSS----RKRRNMLMKMAEGNCKIIF 464 (687)
Q Consensus 414 ~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~----~e~R~~l~el~~~~~~vvf 464 (687)
.+++++..+++.... .-.++|+|=..+- +.-++.+.+..+.+-++++
T Consensus 85 ~le~i~~~al~rA~~----~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kplia 135 (179)
T COG1618 85 GLEEIAIPALRRALE----EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIA 135 (179)
T ss_pred HHHHHhHHHHHHHhh----cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEE
Confidence 344455555442221 3579999988664 4567777777555544433
No 271
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.78 E-value=0.012 Score=63.12 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=33.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdy 390 (687)
...|.+|-+.|-+||||||+|+.|...+... ...+.++..|.|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4578999999999999999999999888632 234555555544
No 272
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.74 E-value=0.011 Score=66.05 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
..+|++|-+.|.+||||||+++.|...+...+.++-++..|+|
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 3478999999999999999999999887666666666666655
No 273
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.73 E-value=0.1 Score=52.28 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+..++.++|.||+|||++|.+++......+.++-.++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5679999999999999999999988766665554453
No 274
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.1 Score=63.44 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4568899999999999999999999864
No 275
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.71 E-value=0.031 Score=51.19 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
++.+++++|-||+|||++++.+++.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 4568999999999999999999999864
No 276
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.71 E-value=0.011 Score=57.55 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|+++|.+||||||++.+|.+.|...|.++-++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999999998888888777
No 277
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.011 Score=63.66 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-..+|+++|.||+|||+|+++||++|.-
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 3468999999999999999999999763
No 278
>PRK04296 thymidine kinase; Provisional
Probab=95.70 E-value=0.046 Score=54.72 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
..+++++|-||+||||++..++.++...+.++.++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999998877777777774
No 279
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.67 E-value=0.068 Score=57.00 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=25.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
.-|++.|-||+||||+|+.+++.+...+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999887654
No 280
>PRK13695 putative NTPase; Provisional
Probab=95.66 E-value=0.11 Score=50.80 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
-|+++|.||+||||+++.|+..+...|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 58999999999999999999887654554
No 281
>PLN02748 tRNA dimethylallyltransferase
Probab=95.66 E-value=0.014 Score=66.34 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
..+.+|+++|-+|||||+||..|++.++...++.|
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 35668999999999999999999999765545555
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=95.62 E-value=0.11 Score=56.00 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++++|-||+||||+|+.+++.+.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999974
No 283
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.61 E-value=0.011 Score=65.02 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
..++.+++|+|-||+||||+|++|++.|..
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345689999999999999999999999875
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.60 E-value=0.11 Score=50.53 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=28.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
++++.|-||+|||++|.+++...-..|.++-.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37899999999999999998877666777766654
No 285
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.56 E-value=0.14 Score=53.62 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=34.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
..++|+|-||+|||+||.+|+.+|...+.++..++..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 368999999999999999999999888888877776555
No 286
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.038 Score=64.36 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
+.|.=|+|.|.||||||++|++||..-+..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 467789999999999999999999886543
No 287
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.55 E-value=0.28 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+||++|++|+|||+-.+.|.. +++
T Consensus 3 lvIVTGlSGAGKsvAl~~lED-lGy 26 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED-LGY 26 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh-cCe
Confidence 789999999999998888874 344
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.53 E-value=0.011 Score=61.49 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.9
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 356 LvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
++|.|||||||+++.+.+++...+.++.++|.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999999999999999998875
No 289
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.52 E-value=0.016 Score=49.33 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=29.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+|+++|.+|+||||++..|+..|...+.++-+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988787776663
No 290
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.50 E-value=0.094 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLT 372 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~La 372 (687)
.|..++++|.||+||||+|+.|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 46789999999999999999885
No 291
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.50 E-value=0.012 Score=62.95 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=25.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
+|+++|.+|||||++|..|++.++...+++|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 58999999999999999999987654444443
No 292
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.49 E-value=0.22 Score=59.27 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=29.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
..+|.+.|.+||||||+|+.|+++|++..++++.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~ 476 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGAL 476 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence 45788899999999999999999998877665544
No 293
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.48 E-value=0.15 Score=57.16 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-++|+|-||+||||+|+.|++.++
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999999864
No 294
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.11 Score=59.41 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|.||+||||+|+.+++.+.-
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4457899999999999999999999863
No 295
>PRK09087 hypothetical protein; Validated
Probab=95.47 E-value=0.04 Score=56.89 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=59.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCC--CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN--QSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~--~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
.++++|-+|||||||++.+++..+...++...+..+-.-....+.- -+.++.. ..++ .+-.++..+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~~~-----------~lf~l~n~~ 113 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FDET-----------GLFHLINSV 113 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCC-CCHH-----------HHHHHHHHH
Confidence 5799999999999999999977544333332121100000000000 0001111 1121 122233334
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el---~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.+.|..+|+.++....+......++ .+.+ ..+++.-.+++.+.+-++++..
T Consensus 114 ~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 114 RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred HhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHHHHH
Confidence 4578888887776665544333333 2333 3556666677776666665543
No 296
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.18 Score=59.36 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+-.++|+|-||+||||+|+.|++.|.-
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 458999999999999999999999863
No 297
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.057 Score=60.64 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=90.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
..++|+=+---|+||||+|+.|.+-++|..+..|-+.+ ....+ +..+...+ -
T Consensus 373 e~tll~pia~igcgktt~ak~l~~lf~w~~vqnd~lsg------------------k~~~k---~~~kai~~-------~ 424 (758)
T COG5324 373 EFTLLVPIATIGCGKTTVAKILEKLFGWPVVQNDNLSG------------------KGGPK---RFAKAIIE-------E 424 (758)
T ss_pred eeEEEEEEEEeccCcccHHHHHHHHcCCcccccCCCCC------------------CCchh---HHHHHHHH-------H
Confidence 45677778888999999999999999998776665532 11111 11111111 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeC--CHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICN--DRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el---~~~~~~vvfIE~~c~--d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (687)
+..+-.+||+|-.|..-..|..+..- .-.|++++-+-..-. -++....|+-+|.. .... +-+++..+....
T Consensus 425 ~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~---~hqs-ik~~eg~~kv~~ 500 (758)
T COG5324 425 FRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGD---RHQS-IKVSEGVDKVKA 500 (758)
T ss_pred hccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccC---Cccc-eeeccchHHHHH
Confidence 22345677778888777778776643 334666655543322 34566666655432 1222 256667777788
Q ss_pred HHHhhhhccccCCCC-----CceEEeec
Q 005630 505 RLANYEKVYEPVDEG-----SYIKMIDM 527 (687)
Q Consensus 505 Ri~~y~~~yEPl~e~-----~yik~in~ 527 (687)
-+..+-+.|.|++.+ .|--||..
T Consensus 501 imn~f~k~ykp~~~~~~~d~~~d~~iel 528 (758)
T COG5324 501 IMNTFYKQYKPFDAGNKHDANYDDIIEL 528 (758)
T ss_pred HHHHHHHhcCCCCCCCCccccccceeec
Confidence 888889999999865 55555543
No 298
>PRK08181 transposase; Validated
Probab=95.44 E-value=0.091 Score=55.81 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=32.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.-++|+|-||+|||+||.+|+..+...|.++..+...+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 359999999999999999999998888888777765443
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.074 Score=59.03 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=33.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cC-cCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~g-i~tdv~~~gdyR 391 (687)
++.+|+|+|.+|+||||++.+|+.++.. .| .++-++..|.||
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 4568999999999999999999988643 34 456667777775
No 300
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.42 E-value=0.021 Score=53.00 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=31.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
|+++|.+|+||||++..|++++...+.++-+++.|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999999999998878777777654
No 301
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.40 E-value=0.021 Score=55.91 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=30.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+|.++|.+||||||++.+|.+.|...|.++-++
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4799999999999999999999999888777666
No 302
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.11 Score=51.26 Aligned_cols=120 Identities=12% Similarity=0.124 Sum_probs=62.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCC-CCcCCCCHHHHHHHHH------------
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNE------------ 417 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~-~f~~~~~e~~~~~~~~------------ 417 (687)
..+|+++|.+|+||-||-..+...|.... +..++ ||....+.... +--+.-.+..|..++.
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fv-----rRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhG 78 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFV-----RRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHG 78 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEE-----EEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcC
Confidence 57999999999999999988888876431 22223 44332221110 0011112222332221
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 418 vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
+.--+=.++..||. .|.+||+.+. +...-.++.. +. ....+.+. ..++++.+|+..|-+
T Consensus 79 L~Ygip~eId~wl~-~G~vvl~NgS---Ra~Lp~arrr--y~-~Llvv~it-a~p~VLaqRL~~RGR 137 (192)
T COG3709 79 LSYGIPAEIDLWLA-AGDVVLVNGS---RAVLPQARRR--YP-QLLVVCIT-ASPEVLAQRLAERGR 137 (192)
T ss_pred ccccCchhHHHHHh-CCCEEEEecc---HhhhHHHHHh--hh-cceeEEEe-cCHHHHHHHHHHhcc
Confidence 00011123445565 4899998543 2222222222 11 22333333 468999999999876
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.36 E-value=0.021 Score=60.39 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=37.4
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 347 ~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
...+|.+|+.+|+-||||||+.++|..+|....-+.+++|.|
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 456789999999999999999999999999888878888876
No 304
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.2 Score=59.39 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4557999999999999999999999875
No 305
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.35 E-value=0.4 Score=50.99 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=33.9
Q ss_pred hhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 340 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 340 ~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
-|.+..+.+....||++-|--|+|||++|+.||+.|+...+
T Consensus 60 ~Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hf 100 (393)
T KOG3877|consen 60 KDKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHF 100 (393)
T ss_pred cchhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCccc
Confidence 35555566677889999999999999999999999986543
No 306
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.34 E-value=0.14 Score=54.21 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=68.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
..|+||||-|+-||||..+-+.|...|.-.|+++..+..-.. .+.. .--+...-.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~-----------------eE~~--------~p~lWRfw~ 108 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSA-----------------EELD--------HDFLWRIHK 108 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH-----------------HHHc--------CchHHHHHH
Confidence 469999999999999999999999998877777666622000 1111 111111111
Q ss_pred HHhcCCeEEEEeCCCCCHH-------------HHHHHH---HH----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 429 WMHEGGQVGIFDATNSSRK-------------RRNMLM---KM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e-------------~R~~l~---el----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
-|=..|+++|+|-+..... .+..+. .+ ...|+.++-+-+.. +.+.-++|++.+..
T Consensus 109 ~lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI-sk~eQ~kRl~~r~~ 183 (264)
T TIGR03709 109 ALPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI-SKEEQKKRFLARLD 183 (264)
T ss_pred hCCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC-CHHHHHHHHHHHhc
Confidence 1234689999987755431 122222 12 55677766665566 47888899988764
No 307
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.31 E-value=0.13 Score=53.68 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ 387 (687)
..-++++.|-||+||||++.+++..+... +.++-.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34589999999999999999999887555 767766665
No 308
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.29 E-value=0.11 Score=54.15 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehhhhHH-----Hh---hCCCCCCCCcCCCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR-----LK---HGVNQSADFFRADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~gdyRr-----~~---~g~~~~~~f~~~~~e~~~~~~~~vA~ 420 (687)
+.-|+++.|.||+|||++|..++..+... +.++-.|+.+.-.+ .. .+...............++.+.+.+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~- 96 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA- 96 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH-
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH-
Confidence 45699999999999999999999988776 57887777642222 11 1111100001111233333332222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHH-Hc-CCceEEEEE
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKM-AE-GNCKIIFLE 466 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~e~-R~~l~el-~~-~~~~vvfIE 466 (687)
..+. .....|.|....+.+. +..++.+ .+ .++.++||+
T Consensus 97 -------~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 97 -------EKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp -------HHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred -------HHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 2233 3558888877777654 6666666 44 788888887
No 309
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.24 Score=58.09 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+-.++++|.||+||||+|+.+++.|.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999999985
No 310
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.19 Score=58.45 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+-.++|+|-||+||||+|+.|++.|.-
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4557899999999999999999999863
No 311
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.14 Score=57.88 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=35.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh--hcCcCceEEehhhhHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~gdyRr 392 (687)
+.+|+|+|.+|+||||++..|+.++. ..+.++-+++.|.||-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 45899999999999999999999886 4467888899888863
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.27 E-value=0.023 Score=60.90 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=35.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
...+.+|.++|.||+||||+...|+..+...+.++-+++.|.
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345778899999999999999999999988888888876653
No 313
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.27 E-value=0.13 Score=57.97 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (687)
|.-|+|+|.||+|||++|++|++.++...+..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~v 81 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheee
Confidence 56799999999999999999999986544443
No 314
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.25 E-value=0.057 Score=60.45 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
....|+++|-+|||||||+++|+++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34579999999999999999999987643
No 315
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.22 Score=58.73 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=25.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999999999864
No 316
>PRK06620 hypothetical protein; Validated
Probab=95.20 E-value=0.11 Score=53.15 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-.++++|-||+||||++++++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 3689999999999999999887754
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.2 Score=55.17 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-+-.++++|-||+||||+|+.+++.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 456889999999999999999999985
No 318
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.016 Score=59.34 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=29.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
++|.+=|..||||||+|+.||++|++..++|=.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGa 37 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGA 37 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccH
Confidence 788899999999999999999999988766543
No 319
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.21 Score=59.36 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=25.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+..++|+|-+|+||||+|+.|++.|.-
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 34568999999999999999999999864
No 320
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.027 Score=62.29 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhhHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYRRL 393 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdyRr~ 393 (687)
=.||-|.||+||||||+.|+..++.. -++.....+.+.|+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI 92 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHH
Confidence 46888999999999999999997643 334444445566653
No 321
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.17 E-value=0.13 Score=51.04 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=24.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
||.+.+-.|||+++||++||+.|+...++.+++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii 33 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREII 33 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHH
Confidence 688899999999999999999988665554443
No 322
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.15 E-value=0.015 Score=59.03 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=26.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
.+++|.++|-+||||||+++.|.. ++...+++|
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 568999999999999999999996 444444444
No 323
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.23 Score=57.44 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4568999999999999999999999864
No 324
>PRK04195 replication factor C large subunit; Provisional
Probab=95.14 E-value=0.081 Score=60.50 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=28.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+..++|+|.||+||||+|++|++.++ .....++..++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~ 75 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQ 75 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEccccc
Confidence 56899999999999999999999865 34445554444
No 325
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.19 Score=61.24 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-+-.++|+|-+|+||||+|+.|++.|.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 455789999999999999999999986
No 326
>PRK05642 DNA replication initiation factor; Validated
Probab=95.11 E-value=0.13 Score=53.12 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=31.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
-.++++|-+|+|||+|+++++..+...+.++..++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 357899999999999999999887766777766766443
No 327
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.09 E-value=0.22 Score=51.77 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
...|.||||-|+.||||.-+.+.|...|.-.|+++..|..-.. .+ ...--+...-
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~-----------------eE--------~~~p~lwRfw 82 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSD-----------------RE--------RTQWYFQRYV 82 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH-----------------HH--------HcChHHHHHH
Confidence 3469999999999999999999999998877777766622111 01 0111111111
Q ss_pred HHHhcCCeEEEEeCCCCCHHH-------------HH---HHHHH----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 428 SWMHEGGQVGIFDATNSSRKR-------------RN---MLMKM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~-------------R~---~l~el----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.-|=..|+++|+|-......- .. .+..+ ...|+.++-+-+..+ .+.-++|++.+..
T Consensus 83 ~~lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIs-k~eQ~kRl~~r~~ 158 (230)
T TIGR03707 83 QHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVS-REEQLRRFKARID 158 (230)
T ss_pred HhCCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-HHHHHHHHHHHhc
Confidence 113346888888877654321 11 12222 566877766665664 7888889988765
No 328
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.08 E-value=0.019 Score=54.77 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=25.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
...+|+|.|-+|+||||+++.|++.|+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 35689999999999999999999998754
No 329
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.07 E-value=0.16 Score=51.71 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=31.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
-.++++|-||+||||+|+++++.+...+.....++..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4688999999999999999999987777777777653
No 330
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.06 E-value=0.55 Score=50.17 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+..|-+++++|-||+||||+|+++++.++
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 34567888899999999999999998763
No 331
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.04 E-value=0.17 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|.+||||||+.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34899999999999999999997653
No 332
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.02 E-value=0.07 Score=46.08 Aligned_cols=52 Identities=17% Similarity=0.442 Sum_probs=42.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEE
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i 95 (687)
-|+|+..+ ....+.|+|+=. +|++ .++|.+.... |.+.+++++ +..+|||++
T Consensus 3 ~v~f~~~~----~a~~V~v~G~F~---~W~~--~~pm~~~~~~-~~~~~~L~~--g~y~YkF~V 54 (79)
T cd02859 3 PTTFVWPG----GGKEVYVTGSFD---NWKK--KIPLEKSGKG-FSATLRLPP--GKYQYKFIV 54 (79)
T ss_pred EEEEEEcC----CCcEEEEEEEcC---CCCc--cccceECCCC-cEEEEEcCC--CCEEEEEEE
Confidence 36666666 568999999875 7986 6999998766 999999887 578999998
No 333
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.01 E-value=0.21 Score=57.29 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=70.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
...|++|+|-|+-||||+++.+.|...|.-.|+++..+..-.. .+.. .--|...-
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~-----------------eE~~--------~~flwRfw 91 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSD-----------------EERE--------RPPMWRFW 91 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCH-----------------HHhc--------CcHHHHHH
Confidence 4578999999999999999999999999988887766622111 1111 11112111
Q ss_pred HHHhcCCeEEEEeCCCCCH-------------HHHHHHH---HH----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 428 SWMHEGGQVGIFDATNSSR-------------KRRNMLM---KM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~-------------e~R~~l~---el----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
..|=..|.++|+|-+.... +.+..+. ++ ...|+.++-+-+.++ .+.-++|+..|..
T Consensus 92 ~~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIs-k~EQ~kRl~~r~~ 167 (493)
T TIGR03708 92 RRLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLS-KKQQKERLKKLEK 167 (493)
T ss_pred HhCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-HHHHHHHHHHHhc
Confidence 1233468888888765443 2222222 22 556777766655664 7788888988865
No 334
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.00 E-value=0.021 Score=53.46 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+|+|-||+|||++|+.|++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999984
No 335
>PF05729 NACHT: NACHT domain
Probab=94.99 E-value=0.024 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
++|++|-||+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 689999999999999999999987654
No 336
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=94.98 E-value=0.044 Score=58.15 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccC-------CCCEEEecCcHHHHHhhhcc
Q 005630 583 ILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 583 pLSe~G~~qA~~La~~L~~~l~~~-------~~~~V~tSpl~Ra~qTA~~i 626 (687)
.||+.|.+|...+|++++++.... ..-.|++|...||++||+.+
T Consensus 62 ~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 62 QLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp SBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 499999999999999999886432 23468999999999999988
No 337
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.96 E-value=0.032 Score=53.37 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|.++|..+|||||+++.|..+|...|.+.-++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 789999999999999999999999888887744
No 338
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.048 Score=55.35 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=28.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++|-+.|...|||||||+.|.+.+... .+++.||+
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~----~lIhqDDF 39 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGC----SLIHQDDF 39 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCC----eeeccccc
Confidence 677889999999999999999987633 36666665
No 339
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.94 E-value=0.086 Score=58.39 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
-..|..+.|.|.||+|||.+|+++++.++ +....++.++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg---~~~i~vsa~eL 184 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAGEL 184 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHHHh
Confidence 35788999999999999999999999854 55566666444
No 340
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.93 E-value=0.097 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...|+++|.+|+||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998643
No 341
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.90 E-value=0.34 Score=52.41 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+-.++|+|-||+||||+|+.|++.|.-
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999999999863
No 342
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.90 E-value=0.045 Score=61.44 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
.|.-|+|+|.||+|||++|++|++.++...++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4567999999999999999999999876655554
No 343
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.26 Score=56.66 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHc
Confidence 355899999999999999999999885
No 344
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.89 E-value=0.31 Score=54.67 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=61.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhhHH-----Hhh---CCCCCCCCcCCCCHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKH---GVNQSADFFRADNPEGMEARNEVA 419 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdyRr-----~~~---g~~~~~~f~~~~~e~~~~~~~~vA 419 (687)
...-+|++.|.||+|||++|-.++..+. ..+.++-.|+.+.-.. ... +..........-+...+..+...+
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999998775 3477777776432221 111 111110001111222233222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005630 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (687)
Q Consensus 420 ~~~L~dl~~~L~~~G~iVIlDAtn~~~e-~R~~l~el-~~~-~~~vvfIE 466 (687)
. .+.+ ....|.|....+.. -|..++.+ .+. ++.+++|+
T Consensus 272 ~--------~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 312 (421)
T TIGR03600 272 D--------RLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVD 312 (421)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 2332 45677676666654 47777777 444 68888887
No 345
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.11 Score=59.96 Aligned_cols=42 Identities=33% Similarity=0.302 Sum_probs=33.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdyR 391 (687)
.+.+|+|+|.+|+||||++.+|+..+... +.++.+++.|.||
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 34688999999999999999999887654 3567777777776
No 346
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.87 E-value=0.21 Score=51.63 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=27.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+..++++.|-||+|||++|.+++...-..|-++-.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyv 55 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYV 55 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 567999999999999999988775533445555555
No 347
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.87 E-value=0.24 Score=57.13 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-||+||||+|+.|++.|.-
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457999999999999999999999864
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.85 E-value=0.24 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+|+++|-+||||||+.+.|..++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7999999999999999999988764
No 349
>PRK06921 hypothetical protein; Provisional
Probab=94.84 E-value=0.29 Score=51.87 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ 387 (687)
..-++|+|-||+|||+||.+++..+... ++.+..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3468999999999999999999998766 766655543
No 350
>PRK06526 transposase; Provisional
Probab=94.80 E-value=0.13 Score=54.17 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
+.-++++|-||+|||++|.+|+..+...|.++..+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4468999999999999999999988777776655433
No 351
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.74 E-value=0.057 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-+++++|-||+||||++..|+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999999998875
No 352
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.72 E-value=0.28 Score=55.62 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdy 390 (687)
-++++|-||+|||+|+++++..+... +.++..++..++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 37889999999999999999998765 455555655444
No 353
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.71 E-value=0.18 Score=52.65 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
....+|.++|++|.||||||+++++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4677999999999999999999998744
No 354
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.35 Score=51.49 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=34.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
++-.|+++|.+|+||||+++.|+..+...+.+.-+++.|.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 345899999999999999999999887666667777777665
No 355
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.70 E-value=0.049 Score=56.51 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=31.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+|.++|.+||||||++.+|+++|...|+++-++
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 3799999999999999999999999889888887
No 356
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.70 E-value=0.042 Score=54.62 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+.-++|.|-||+|||++|.+++..+-..|..+..++..+.-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 456999999999999999999999988999999888765533
No 357
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.69 E-value=0.033 Score=53.66 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+|.++|.+|+||||++..|+..+...+.++-+++.|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 378899999999999999999998888888777665
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.69 E-value=0.13 Score=58.89 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=35.7
Q ss_pred hhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 341 ~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
|.+++..=.+..++++.|-||+||||++.+++......|-++-.+..+
T Consensus 253 D~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 253 DEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 344443334667999999999999999999998776667666665543
No 359
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.65 E-value=0.12 Score=53.10 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC--C-------CCcCCC-CHHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--A-------DFFRAD-NPEGMEARNEVAAL 421 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~--~-------~f~~~~-~e~~~~~~~~vA~~ 421 (687)
.|+++.|.+|+|||.+|-+||+.+++..+..|.+ .-|+.+..+-+.. . .|..+- =.++.-. .+-|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri--q~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~-a~ea~~ 78 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI--QCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIIN-AEEAHE 78 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG--GG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce--ecccccccccCCCCHHHHcccceeeeccccccCCCcC-HHHHHH
Confidence 4889999999999999999999998876666654 3455544332211 0 121111 0011100 111222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.|-+.+..+.. +..+|+.+... ..+.++ -..++.+...-...++++....++.+|.+
T Consensus 79 ~Li~~v~~~~~-~~~~IlEGGSI-----SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 79 RLISEVNSYSA-HGGLILEGGSI-----SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHHHTTTT-SSEEEEEE--H-----HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-cCceEEeCchH-----HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 23333333444 66778766553 334444 22467776666678888888777777653
No 360
>PRK08116 hypothetical protein; Validated
Probab=94.62 E-value=0.26 Score=52.21 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=33.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
..-++|.|-||+|||+||.+++..|...+..+..++..++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3468999999999999999999999877878777776553
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.61 E-value=0.33 Score=52.52 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=34.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+.=++|.|-+|+|||+||.+|+..+...|+++..+...++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 3469999999999999999999999988999888876544
No 362
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.60 E-value=0.027 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=22.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
|+|.|-||+|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999864
No 363
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.59 E-value=0.052 Score=61.02 Aligned_cols=28 Identities=36% Similarity=0.390 Sum_probs=24.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
--|+|+|.||+|||++|+.|++.+++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4589999999999999999999876543
No 364
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.53 E-value=0.059 Score=53.31 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdy 390 (687)
...++|+|.+|+|||.+|++|++.|. ....+...+|..+|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 45799999999999999999999987 34456666766666
No 365
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.52 E-value=0.21 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
..-+.++.||+|||||||.|.|-+-.
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccC
Confidence 34688999999999999999987643
No 366
>PRK09183 transposase/IS protein; Provisional
Probab=94.52 E-value=0.33 Score=51.19 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
...++++|-||+||||||.+|+..+...|.++..++..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~ 140 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD 140 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH
Confidence 346779999999999999999988777787776665433
No 367
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.52 E-value=0.31 Score=55.95 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.|.-|+|+|-||+|||++|++|+..++.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3445899999999999999999988643
No 368
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.51 E-value=0.027 Score=61.35 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=25.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
-|+|.|.||+||||+++.|++.|++..+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3899999999999999999999987654
No 369
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.46 E-value=0.47 Score=57.09 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-++|+|-||+||||+|+.+++.+.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999998754
No 370
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.45 E-value=0.074 Score=60.26 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+.-|+++|.||+|||++|++|+..+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346888999999999999999998753
No 371
>PRK04328 hypothetical protein; Provisional
Probab=94.44 E-value=0.26 Score=51.45 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+..++++.|-||+|||++|.++....-..|.++-.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4679999999999999999987766434466665553
No 372
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.42 E-value=0.029 Score=67.19 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|.+.|.|||||||+|+.|+++|++..+++--+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE
Confidence 789999999999999999999998776655443
No 373
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.40 E-value=0.37 Score=50.50 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=63.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCC---CC-CCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---NQ-SADFFRADNPEGMEARNEVAALAMEDM 426 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~---~~-~~~f~~~~~e~~~~~~~~vA~~~L~dl 426 (687)
++++++.|--|+||||+|..|+.++...+.++-+++.|--.....+. .. ...+.+ ..+ +-.....++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~-~~~--------i~~r~fD~L 73 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMD-GDE--------INTRNFDAL 73 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceeccc-CCc--------cchhhHHHH
Confidence 56777789999999999999999998888888888775332111111 11 111111 111 111123444
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHH------HHHHH-HcCCceEEEEEEEe
Q 005630 427 ISWMHEGGQVGIFDATNSSRKRRN------MLMKM-AEGNCKIIFLETIC 469 (687)
Q Consensus 427 ~~~L~~~G~iVIlDAtn~~~e~R~------~l~el-~~~~~~vvfIE~~c 469 (687)
++.+...+..+|+|.+...-..-. .+.++ .+.|..+++.-++.
T Consensus 74 ve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~ 123 (241)
T PRK13886 74 VEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVT 123 (241)
T ss_pred HHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEEC
Confidence 455554566678887765533221 22344 66787777765443
No 374
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.37 E-value=0.45 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.|.++|.+|+|||||+.+|....+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g 27 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG 27 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999986544
No 375
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.35 E-value=1.1 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+-+++++|-+|+||||+++.+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998876
No 376
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.35 E-value=0.039 Score=53.37 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
...+.+++++|.+|+|||++.+++.+++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4467899999999999999999999998766
No 377
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.64 Score=54.58 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=25.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 34668899999999999999999999863
No 378
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.29 E-value=0.99 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.-|+|+|.||+|||++|++++..+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 35568899999999999999999987654
No 379
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.29 E-value=0.44 Score=53.63 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=59.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhHH-----Hhh---CCCCCCCCcCCCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR-----LKH---GVNQSADFFRADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyRr-----~~~---g~~~~~~f~~~~~e~~~~~~~~vA~ 420 (687)
+.-++++.|-||+|||+++..++..+.. .|..+-.|+...-.+ ... +..........-....+..+...+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~- 272 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAA- 272 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHH-
Confidence 4579999999999999999999988654 466666665542222 111 111000000011222222222222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~~~~vvfIE 466 (687)
..+.+ ....|.|....+. +-+..++.+ .++++++++|+
T Consensus 273 -------~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID 312 (434)
T TIGR00665 273 -------GKLSE-APLYIDDTPGLTITELRAKARRLKREHGLGLIVID 312 (434)
T ss_pred -------HHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 12332 3455656555554 446677777 66788888886
No 380
>PRK05636 replicative DNA helicase; Provisional
Probab=94.28 E-value=0.31 Score=56.27 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=63.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhH-----HHhhCCCC-C-CCC-cCCCCHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR-----RLKHGVNQ-S-ADF-FRADNPEGMEARNEVA 419 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyR-----r~~~g~~~-~-~~f-~~~~~e~~~~~~~~vA 419 (687)
.+.-+|++.|-||.|||++|..++..... .+..+-+|+...-. |.+..... . ..+ ....+++.+..+.+.+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~ 342 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRL 342 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35679999999999999999999887653 35555566543221 11111100 0 001 1112333333333322
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005630 420 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 420 ~~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~~~~vvfIE 466 (687)
.. +. .....|.|..+.+. +-|..++.+ .++++.+++|+
T Consensus 343 ~~--------l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID 382 (505)
T PRK05636 343 GK--------IA-QAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD 382 (505)
T ss_pred HH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22 22 35677888888775 457778877 66788888885
No 381
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.27 E-value=0.041 Score=64.74 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=34.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
..+.+.+|||.||-||||||+-+|++ .|+++..+|..|-|-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq---aGYsVvEINASDeRt 364 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ---AGYSVVEINASDERT 364 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh---cCceEEEeccccccc
Confidence 35679999999999999999999998 778888888766654
No 382
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.27 E-value=0.32 Score=52.97 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
+..++.+.|-|||||||||-.++......+-.+-.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 56799999999999999999988877666655555543
No 383
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.26 E-value=0.08 Score=56.78 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=39.7
Q ss_pred hhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 341 ~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+....+.+++|+++-+.|-+|+||+++|+.|++.+...|.++..+
T Consensus 100 ~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170|consen 100 SHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred HHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH
Confidence 334456688999999999999999999999999999999888877
No 384
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.35 Score=56.77 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999999986
No 385
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.23 E-value=0.15 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
++-|+++|.||+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 567999999999999999999654
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.19 E-value=0.32 Score=51.16 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+..+++++|-||+|||++|.+++......|-++-.++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4679999999999999999998876544555554443
No 387
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.46 Score=55.19 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-||+||||+|+.|++.|.-
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999863
No 388
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.14 E-value=0.033 Score=57.53 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
++|.++|+|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999764
No 389
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.09 E-value=0.34 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
++++|-||+||||+++.+++.+...
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6999999999999999999987543
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.08 E-value=0.06 Score=53.13 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=22.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
|+++|-||+||||+.+++.+.|...++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 7899999999999999999999644333
No 391
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.06 E-value=0.36 Score=53.62 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45699999999999999999999887766555544543
No 392
>PRK08760 replicative DNA helicase; Provisional
Probab=94.06 E-value=0.42 Score=54.79 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=61.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhHH-----HhhC---CCCCCCCcCCCCHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR-----LKHG---VNQSADFFRADNPEGMEARNEVA 419 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyRr-----~~~g---~~~~~~f~~~~~e~~~~~~~~vA 419 (687)
.+.-+|++.|.||.|||++|-.++..... .+..+-+|+...-.. .... ..........-+...+..+...+
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 35679999999999999999999987654 366666666543222 1111 11000000111222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 005630 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 420 ~~~L~dl~~~L~~~G~iVIlDAtn~~~e-~R~~l~el-~~~~~~vvfIE 466 (687)
. .|.+ -...|.|....+.+ -|..++.+ .+.++.+++|+
T Consensus 307 ~--------~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 307 K--------MLKE-TKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred H--------HHhc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2 2332 45667676666654 47777777 56678888886
No 393
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.36 Score=55.76 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=25.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+-+++|+|-||+||||+|+.|++.+.-
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34568999999999999999999999864
No 394
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.02 E-value=0.34 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.+|++.|-||||||.||-.|++.|
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHh
Confidence 4589999999999999999999998
No 395
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.97 E-value=0.41 Score=52.26 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=29.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
+..++.+.|-|||||||+|-.++......+-.+-.++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 45689999999999999999998877655555554443
No 396
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.96 E-value=0.032 Score=67.86 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=28.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
+++|.+.|.|||||||+|+.||++|++..+++.
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g 66 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTG 66 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 368999999999999999999999987654443
No 397
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.94 E-value=0.048 Score=56.61 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=34.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
++.-+++|.|||||||.+..+.+.|...|.++.++|.|
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLD 39 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLD 39 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecC
Confidence 34568899999999999999999999999999998875
No 398
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.93 E-value=0.17 Score=56.47 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.|.-|+|+|.||+|||++|++++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 4567999999999999999999998653
No 399
>PF13245 AAA_19: Part of AAA domain
Probab=93.92 E-value=0.062 Score=46.14 Aligned_cols=25 Identities=36% Similarity=0.301 Sum_probs=18.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-++++.|.||||||+++..+..++-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788899999999966655555554
No 400
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.90 E-value=0.52 Score=52.56 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=29.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdy 390 (687)
.++++|-||+|||+|+++++..+... +..+..++..++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 47889999999999999999998654 455555555443
No 401
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.89 E-value=0.14 Score=56.86 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=36.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-------hcCcCceEEehhhhHHHhhCC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-------WLGHDTKHFNVGKYRRLKHGV 397 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~-------~~gi~tdv~~~gdyRr~~~g~ 397 (687)
+.-++.++|-.||||||+++.|.--.. |.|-.++--+.++||+.....
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav 402 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence 556889999999999999999975432 455566667779999976443
No 402
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.78 Score=54.32 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=26.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.-+-.++|+|.+|+||||+|+.|++.|...
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345579999999999999999999998753
No 403
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.85 E-value=0.53 Score=56.72 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=33.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcC-cCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~-~~g-i~tdv~~~gdyR 391 (687)
++.+|.|+|..|+||||+..+|+.++. ..| .++-++..|.||
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 357999999999999999999998874 444 355666667776
No 404
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.84 E-value=1.2 Score=50.59 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcC--cCceEEehhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVGK 389 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~g--i~tdv~~~gd 389 (687)
-++++|-||+|||+|+++++..+.... .++..++..+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 389999999999999999999886543 3444444433
No 405
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.82 E-value=0.084 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|.+|+|||++..++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 788999999999999998754
No 406
>PRK06321 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.65 Score=53.26 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhHH-----Hhh---CCCCCCCC-cCCCCHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR-----LKH---GVNQSADF-FRADNPEGMEARNEV 418 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyRr-----~~~---g~~~~~~f-~~~~~e~~~~~~~~v 418 (687)
...-+|++.|.||.|||++|-.++..... .+..+-+|+...-.. ... +... ..+ ....+...+..+...
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~-~~i~~~~l~~~e~~~~~~a 302 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVES-KKISVGDLSGRDFQRIVSV 302 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCH-HHhhcCCCCHHHHHHHHHH
Confidence 34569999999999999999999987643 356666665532222 111 1110 011 111233333333332
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005630 419 AALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 419 A~~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~~~~vvfIE 466 (687)
+.. |.+ ....|-|..+.+. +-|..++.+ .+.++.+++|+
T Consensus 303 ~~~--------l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvID 343 (472)
T PRK06321 303 VNE--------MQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIID 343 (472)
T ss_pred HHH--------HHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 222 332 3455656556554 457888877 66788888886
No 407
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.78 E-value=0.083 Score=48.71 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.4
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|.||+||||+..+|...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988643
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.77 E-value=0.077 Score=52.39 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+++++|+.||||||+-+.|.+ ....+.+.-++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 789999999999999999997 44456666555
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.77 E-value=1 Score=50.47 Aligned_cols=43 Identities=30% Similarity=0.275 Sum_probs=32.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~gdyRr 392 (687)
++.+|+|+|.-|.||||.-.+||.++. ....++-++..|.||=
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 367999999999999877777777666 3345666788888853
No 410
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.77 E-value=0.14 Score=58.21 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=33.3
Q ss_pred hhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 341 ~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
|.+++-.-...-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 84 D~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 84 DRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred HHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 34443222355699999999999999999999887665555544443
No 411
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.75 E-value=1.4 Score=50.15 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdy 390 (687)
++++|-+|+|||+|+++++.++... +.++..++..++
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 6889999999999999999987643 455555554433
No 412
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.31 Score=51.66 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.|..+++.|.||+||||+|..|++.|.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 455899999999999999999999986
No 413
>PRK08006 replicative DNA helicase; Provisional
Probab=93.75 E-value=0.68 Score=53.05 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=62.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhhH-----HHhhCCCC-C-CCC-cCCCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR-----RLKHGVNQ-S-ADF-FRADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdyR-----r~~~g~~~-~-~~f-~~~~~e~~~~~~~~vA~ 420 (687)
+.-+|++.|.||.|||++|-.|+.... ..+..+-+|+..--. |.+..... + ..+ ...-+++.+..+...+.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 456999999999999999999998765 346666666553222 22211100 0 011 11123333443333333
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~e-~R~~l~el-~~~-~~~vvfIE 466 (687)
..+. .-...|.|....+.. -|..++.+ .++ ++.+++|+
T Consensus 303 ~~~~--------~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 343 (471)
T PRK08006 303 ILLE--------KRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID 343 (471)
T ss_pred HHHh--------cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3222 345777777777754 57777777 444 68888885
No 414
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=93.73 E-value=0.1 Score=56.29 Aligned_cols=89 Identities=9% Similarity=0.044 Sum_probs=48.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC------------CCCcCCCCHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS------------ADFFRADNPEGMEARNEV 418 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~------------~~f~~~~~e~~~~~~~~v 418 (687)
+.+|+++|..|||||.||-.||++ ....+++|.+ .-||.+-.|.+.. .++-+....-......+.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~--QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI--QVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH--HHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 348999999999999999999998 3233444433 2344432222111 122222222223333444
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 005630 419 AALAMEDMISWMHEGGQVGIFDATNSS 445 (687)
Q Consensus 419 A~~~L~dl~~~L~~~G~iVIlDAtn~~ 445 (687)
|..+++ +.+..+..++|+-+|..+
T Consensus 81 a~~~i~---~i~~~gk~PilvGGTglY 104 (300)
T PRK14729 81 ALKIIK---ELRQQKKIPIFVGGSAFY 104 (300)
T ss_pred HHHHHH---HHHHCCCCEEEEeCchHH
Confidence 444444 233444557777777754
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.52 Score=45.95 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|.+|+||||+.+.|+..+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45899999999999999999997764
No 416
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.57 Score=55.21 Aligned_cols=29 Identities=38% Similarity=0.406 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
-+-.++|+|-+|+||||+|+.|++.|.-.
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45589999999999999999999998643
No 417
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.70 E-value=0.092 Score=49.49 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|.+|+|||++..++...
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999988644
No 418
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=93.67 E-value=0.32 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+|+++|.+|+||||+..+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.66 E-value=0.44 Score=48.22 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
...++.++|-||+|||++|..++.....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~ 45 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQL 45 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhc
Confidence 4569999999999999999999876543
No 420
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=93.64 E-value=1.2 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|.++|.+++|||||+.+|....+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g 24 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTG 24 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999986544
No 421
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.62 E-value=0.072 Score=54.28 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=34.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+++++|-+|+||||++..|+..+...|.++-+++.|--
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~ 38 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999999999999999887533
No 422
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.62 E-value=0.61 Score=48.22 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=26.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.-+++++|.||+||||+|.+++..+-..|.++..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi 58 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYV 58 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 44999999999999999977776654455555444
No 423
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.55 E-value=0.087 Score=56.11 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|.++|.+|||||||+..|.+.|...| ++-++
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 799999999999999999999999888 65555
No 424
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.53 E-value=0.57 Score=53.27 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35699999999999999999999887655555544443
No 425
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.54 Score=55.63 Aligned_cols=26 Identities=31% Similarity=0.338 Sum_probs=23.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-.++|+|-||+||||+|+.|++.|.-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 36899999999999999999999864
No 426
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.49 E-value=0.15 Score=58.85 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
|.=|+|.|.||+|||++|++++..|...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4458999999999999999999998654
No 427
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=93.47 E-value=0.87 Score=44.43 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.++.-|+++|.+|+||||+..+|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35567899999999999999998754
No 428
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=93.46 E-value=0.088 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|.+|+|||||..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 429
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.43 E-value=0.082 Score=51.06 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|.+|+|||||.++|...
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988754
No 430
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.43 E-value=0.61 Score=45.58 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|.+||||||+.+.|+..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987653
No 431
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.42 E-value=0.88 Score=53.64 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=29.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gdy 390 (687)
++|+|-+|+|||+|+++++.++... +.++..++..++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 7999999999999999999998653 556655655443
No 432
>PRK08506 replicative DNA helicase; Provisional
Probab=93.41 E-value=0.64 Score=53.24 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=61.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH-----Hhh---CCCCCCCCcCCCCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-----LKH---GVNQSADFFRADNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr-----~~~---g~~~~~~f~~~~~e~~~~~~~~vA~~ 421 (687)
+.-+|++.|.||.|||++|..++......+..+-+|+...-.. .+. +.....-....-+...+..+.+.+..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 270 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDE 270 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999988755566666665532221 111 11110000011123333333222222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-Hc-CCceEEEEE
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AE-GNCKIIFLE 466 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e-~R~~l~el-~~-~~~~vvfIE 466 (687)
+.+ ....|.|..+.+.. -|..++.+ .+ .++.+++|+
T Consensus 271 --------l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID 309 (472)
T PRK08506 271 --------LSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID 309 (472)
T ss_pred --------HHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 322 45777777676654 47777777 33 357788875
No 433
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.40 E-value=0.65 Score=52.89 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++|+|-||+||||+|+.+++.+.-
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4568899999999999999999999853
No 434
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.8 Score=44.96 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|..|+||||+.+.|+..+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999986543
No 435
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.36 E-value=0.7 Score=53.20 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=28.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ 387 (687)
+.-++++.|-||+|||++|.+++...... |-++-.++.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 45699999999999999999987554333 555554443
No 436
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.35 E-value=0.088 Score=53.17 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=25.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+++.+|.++|++||||||+-.+|.+.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998865
No 437
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.35 E-value=0.16 Score=57.09 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
--|+|+|.||+|||++|+.|++.++
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4799999999999999999998865
No 438
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.34 E-value=0.25 Score=52.35 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++-++|-+||||||+|+.|.+-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 45889999999999999999997664
No 439
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.33 E-value=0.64 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.++++|-||+||||+|+.+++.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37799999999999999999998643
No 440
>PRK05595 replicative DNA helicase; Provisional
Probab=93.32 E-value=0.7 Score=52.39 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=61.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhHH-----HhhCCC-CC-CCCc-CCCCHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR-----LKHGVN-QS-ADFF-RADNPEGMEARNEVA 419 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyRr-----~~~g~~-~~-~~f~-~~~~e~~~~~~~~vA 419 (687)
.+.-+|++.|-||.|||++|..++..+.. .|.++-+|+...-.+ .+.... -+ ..+. ..-+...+..+...+
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~ 278 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARAS 278 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 34569999999999999999999987653 466666666542221 111100 00 0010 011232233222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 005630 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 420 ~~~L~dl~~~L~~~G~iVIlDAtn~~~e-~R~~l~el-~~~~~~vvfIE 466 (687)
. .+.+ ....|.|....+.. -|..++.+ .+.++.+++|+
T Consensus 279 ~--------~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvID 318 (444)
T PRK05595 279 G--------PLAA-AKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILID 318 (444)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2 1222 45677777676644 57777777 56778888875
No 441
>PRK09165 replicative DNA helicase; Provisional
Probab=93.30 E-value=0.81 Score=52.77 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=58.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc---------------CcCceEEehhhhHH-----Hhh---CCCCCCCCcC
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL---------------GHDTKHFNVGKYRR-----LKH---GVNQSADFFR 405 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~---------------gi~tdv~~~gdyRr-----~~~---g~~~~~~f~~ 405 (687)
.+.-+|++.|.||.|||++|-.++...... |..+-+|+...-.. .+. +.....-...
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~ 294 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRG 294 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcC
Confidence 345699999999999999998888765422 33444554422211 111 1111000011
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005630 406 ADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 406 ~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~~~~vvfIE 466 (687)
.-++..+..+...+.. +. .....|-|....+. +-|..++.+ .++++.+++|+
T Consensus 295 ~l~~~e~~~l~~a~~~--------l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvID 348 (497)
T PRK09165 295 KISEEDFEKLVDASQE--------LQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVD 348 (497)
T ss_pred CCCHHHHHHHHHHHHH--------Hh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1123333333322222 22 24566666666665 457777777 56788888885
No 442
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.29 E-value=0.074 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.8
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar 373 (687)
-|+++|.||+||||+.++|..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999874
No 443
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.29 E-value=1.4 Score=48.42 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=25.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
..+-.++++|.||+|||++++.+.+.+...+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3445678999999999999999999886543
No 444
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=93.28 E-value=0.38 Score=43.47 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=47.6
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecC-----CCCCceeeEEEEecCC
Q 005630 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVP-----PNHETLDFKFLLKPKY 99 (687)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~-----~~~~~leyKf~i~~~~ 99 (687)
-++|++-||. -..+.|+|+-. +|++.. .+|.+...+.|++.+... .++.--.|||.|...+
T Consensus 6 g~~FrvwAP~---A~~V~l~GdFn---~W~~~~-~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~ 71 (99)
T cd02854 6 GVTYREWAPN---AEEVYLIGDFN---NWDRNA-HPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPS 71 (99)
T ss_pred eEEEEEECCC---CCEEEEEccCC---CCCCcC-cccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCC
Confidence 3789999995 45788888775 898744 679998899999998863 3455678999998743
No 445
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=93.27 E-value=0.6 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+++|.+|+||||+..+|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999987644
No 446
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.24 E-value=0.35 Score=56.27 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=62.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc-------CcCceEEehhhhHHHhhCCCCCCCCcC-----------C-CCHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWL-------GHDTKHFNVGKYRRLKHGVNQSADFFR-----------A-DNPEGM 412 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~-------gi~tdv~~~gdyRr~~~g~~~~~~f~~-----------~-~~e~~~ 412 (687)
..+.++|.+||||||+++.|.+.+... |.+..-++.+.+|+...-..++...|. + .++
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~--- 432 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD--- 432 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCH---
Confidence 467799999999999999999987631 444555666777775543333332222 2 122
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCeEEEEe--CCCCCHHHHHHHH---HHHcCCceEEEEE
Q 005630 413 EARNEVAALAMEDMISWMH--EGGQVGIFD--ATNSSRKRRNMLM---KMAEGNCKIIFLE 466 (687)
Q Consensus 413 ~~~~~vA~~~L~dl~~~L~--~~G~iVIlD--Atn~~~e~R~~l~---el~~~~~~vvfIE 466 (687)
+.+.+.++.+ .+.+|+. .+|.--++. +.+..-.+|+++. .+.+ +.+++.++
T Consensus 433 eei~~a~k~a--~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~-~~~ILILD 490 (567)
T COG1132 433 EEIEEALKLA--NAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR-NPPILILD 490 (567)
T ss_pred HHHHHHHHHh--ChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 2333344333 1233433 336655554 5667766666553 3433 33666663
No 447
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.24 E-value=0.27 Score=55.08 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.|.-|+|.|.||+|||++|++++..+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567889999999999999999987543
No 448
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.20 E-value=1 Score=51.24 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=28.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
+++.|-||+|||||+++++..+...+.++..++.
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 6788999999999999999998776766655544
No 449
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.16 E-value=0.24 Score=56.94 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.-|+|+|.||+|||++|++++..++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45678999999999999999999986643
No 450
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.15 E-value=0.076 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-.++++|.||+|||++|+.++..++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999865
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.14 E-value=0.1 Score=59.83 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=33.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cC-cCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~g-i~tdv~~~gdyR 391 (687)
++.+|.|+|..|+||||++.+|+.++.. .| .++-++..|.||
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 4579999999999999999999998853 33 356667666663
No 452
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.12 E-value=0.11 Score=51.13 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
..+|-++|..+||||||..+|.+.|...|++.-++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 45899999999999999999999999999887776
No 453
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.10 E-value=0.19 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+..-|+++|++|+||||+..+|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999988874
No 454
>COG3911 Predicted ATPase [General function prediction only]
Probab=93.07 E-value=1.4 Score=43.20 Aligned_cols=33 Identities=36% Similarity=0.382 Sum_probs=26.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..++||+|-||+|||||-.+|++. |.-+...-.
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~----Gfatvee~~ 41 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA----GFATVEEAG 41 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc----Cceeeccch
Confidence 368999999999999999999975 555555443
No 455
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.05 E-value=0.12 Score=54.36 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=35.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++.=+++.|-||+|||+||.+|+..+...|+++..+..-+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45679999999999999999999999977999998876444
No 456
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.05 E-value=0.072 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-|+|.|-||+|||++|+.|++.++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999998764
No 457
>COG4240 Predicted kinase [General function prediction only]
Probab=93.01 E-value=0.14 Score=53.06 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC-cCceEEehhhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKY 390 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g-i~tdv~~~gdy 390 (687)
.+|+++-++|--||||||+|-.|...|...| .++-.++.||+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 4699999999999999999999999999888 47777877765
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.99 E-value=0.099 Score=49.24 Aligned_cols=28 Identities=32% Similarity=0.209 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
...+|+|.|=.|+||||++|.|++.|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4579999999999999999999999864
No 459
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.94 E-value=0.86 Score=44.82 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|.+||||||+.+.|+..+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999997653
No 460
>PRK05748 replicative DNA helicase; Provisional
Probab=92.91 E-value=1.1 Score=50.99 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=60.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhh-----HHHhhCCCC-CCC-C-cCCCCHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKY-----RRLKHGVNQ-SAD-F-FRADNPEGMEARNEVA 419 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdy-----Rr~~~g~~~-~~~-f-~~~~~e~~~~~~~~vA 419 (687)
.+.-+|++.|-||.|||++|-.++..... .+..+-+|+...- +|....... ... + ...-+...+..+...+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 35569999999999999999999987653 3666666654322 122111110 000 1 0111222232222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEE
Q 005630 420 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLE 466 (687)
Q Consensus 420 ~~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~-~~~vvfIE 466 (687)
.. +. .....|.|..+.+. +-|..++.+ .+. ++++++|+
T Consensus 281 ~~--------l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvID 321 (448)
T PRK05748 281 GS--------LS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILID 321 (448)
T ss_pred HH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 22 22 24466666666664 457777777 555 68888886
No 461
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=92.89 E-value=0.61 Score=50.69 Aligned_cols=127 Identities=18% Similarity=0.227 Sum_probs=70.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhh-----------CCCCC-CCCcCCCCHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-----------GVNQS-ADFFRADNPEGMEARNE 417 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~-----------g~~~~-~~f~~~~~e~~~~~~~~ 417 (687)
+-.||++.|-.|+|||-||..||.+++...|++|-+-. |+-.-. |.... .+.....-+.+....+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQv--YkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQV--YKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceee--ecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 45799999999999999999999997766666554311 111000 00000 12222222333444445
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH-----H-----------HcCCceEEEEEEEeCCHHHHHHHHHh
Q 005630 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMK-----M-----------AEGNCKIIFLETICNDRDIIERNIRL 481 (687)
Q Consensus 418 vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~e-----l-----------~~~~~~vvfIE~~c~d~eii~rrI~~ 481 (687)
.|..+.+ ..++.+-..+|+-++|.+-.. .+.+ . .+..+...||.+.+ ++.++.+++.+
T Consensus 84 ~a~~aie---~I~~rgk~PIv~GGs~~yi~a--l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~VL~~~l~~ 157 (348)
T KOG1384|consen 84 DASRAIE---EIHSRGKLPIVVGGSNSYLQA--LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQAVLFERLDK 157 (348)
T ss_pred HHHHHHH---HHHhCCCCCEEeCCchhhHHH--HhhcCCCcccCcccccCCCCCcccccceEEEEEec-chHHHHHHHHH
Confidence 5555444 223444567777777765321 1111 0 01125566666666 57889999988
Q ss_pred hhc
Q 005630 482 KIQ 484 (687)
Q Consensus 482 r~~ 484 (687)
|..
T Consensus 158 RVD 160 (348)
T KOG1384|consen 158 RVD 160 (348)
T ss_pred HHH
Confidence 763
No 462
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.89 E-value=0.36 Score=49.11 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~ 386 (687)
++.++++.|-||+|||++|.+++...-.. |-++-.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 45699999999999999999877554444 66665553
No 463
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.88 E-value=1.6 Score=52.75 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.|.-|+|.|.||+|||++|++|+..++.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3456889999999999999999998654
No 464
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.87 E-value=0.087 Score=61.28 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
..++.+++|+|.||+||||||+.|++.|...
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3456699999999999999999999998865
No 465
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.83 E-value=0.12 Score=57.09 Aligned_cols=36 Identities=25% Similarity=0.138 Sum_probs=32.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+.+|.++|.|||||||+..+|.+.|...|+++-++
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~i 239 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLI 239 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 456999999999999999999999999988887766
No 466
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.82 E-value=0.048 Score=51.81 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
|+|-|.||.||||+|++|++.++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6789999999999999999997643
No 467
>PRK06851 hypothetical protein; Provisional
Probab=92.81 E-value=0.14 Score=56.68 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
...+++|+|.||+||||+.++|.+.+...|.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999999999999998778777665
No 468
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.77 E-value=0.78 Score=45.79 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|.+||||||+.+.|+..+
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999765
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.75 E-value=1.3 Score=46.50 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
.|+=++++|-+||||||+...|-..+....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 567899999999999999999988876543
No 470
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=1.1 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-+-.++|+|-+|+||||+|+.|++.+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456889999999999999999999975
No 471
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.73 E-value=0.79 Score=44.96 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|.+||||||+.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34799999999999999999997654
No 472
>PHA02542 41 41 helicase; Provisional
Probab=92.73 E-value=0.96 Score=51.88 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.+.-+|++.|-||.||||+|..++......|..+-+|+..
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE 227 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME 227 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 4566999999999999999999998876567777777653
No 473
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.72 E-value=0.11 Score=52.68 Aligned_cols=27 Identities=41% Similarity=0.377 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
|+.|.++|.+||||||+.+.|.+.+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 578999999999999999999988754
No 474
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.71 E-value=0.65 Score=45.10 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|.+|+||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 475
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.71 E-value=0.18 Score=54.18 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=35.9
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 347 ~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
....+.+|=++|.||+||||+-.+|.+.|...|+++-++.+
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAV 87 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV 87 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEE
Confidence 34467799999999999999999999999999988888754
No 476
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.70 E-value=1.3 Score=48.32 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-+-.++++|.+|.||+++|+.+++.|.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 44566899999999999999999999985
No 477
>PRK10646 ADP-binding protein; Provisional
Probab=92.66 E-value=0.12 Score=50.56 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+.+|+|.|=-|+||||++|.|++.|+.
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999999874
No 478
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=92.65 E-value=0.4 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
-|+++|++|+|||+|..+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999988754
No 479
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.22 Score=57.85 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.|.=|+++|.||||||.||++||..|+.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 3455899999999999999999999864
No 480
>PTZ00369 Ras-like protein; Provisional
Probab=92.64 E-value=0.078 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.9
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.=|+++|.+|+|||||..++..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4578889999999999988774
No 481
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=92.63 E-value=0.32 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++|.++|-|++|||||..+|..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 4789999999999999999973
No 482
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.14 Score=58.58 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=26.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
..+..|+|.|.||+|||++|++++..+++..+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 45668999999999999999999997655443
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.56 E-value=0.56 Score=56.50 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.+.-|+|+|-||+||||+|++|+..++..
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34568899999999999999999987543
No 484
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=92.56 E-value=0.24 Score=52.61 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 346 ~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
..++.|++|-++|-||+||||+|+.|+..|..-+
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~ 110 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWP 110 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCC
Confidence 3478999999999999999999999999987543
No 485
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.54 E-value=0.1 Score=58.53 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=27.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
.-=|++.|-||+||||+|++||.++...|-=++
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~GkiVK 295 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGKIVK 295 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCcEEe
Confidence 334888999999999999999999988775333
No 486
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.53 E-value=0.084 Score=58.04 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.|.-|+|+|.||+|||++|++++..+..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3556899999999999999999998654
No 487
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.53 E-value=0.2 Score=57.57 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+...+.++|-+||||||+++.|.+.+.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999997754
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.52 E-value=0.29 Score=48.64 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
...|+++|-+||||||+.+.|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45899999999999999999998765
No 489
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.51 E-value=0.12 Score=55.54 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=25.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+..+|.++|.||||||||...|.+.|..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999998754
No 490
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=2 Score=50.55 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.-+-+++|+|-+|+||||+|+.|++.|..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35668999999999999999999999874
No 491
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.47 E-value=1.1 Score=42.75 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=53.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
.-++.++|.+|+||||+.+.|+..+.-. .-.+...+ .+ ...|..+ =..+.+.+..+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~-~~--------~i~~~~~-lS~G~~~rv~laral~~------ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGS-TV--------KIGYFEQ-LSGGEKMRLALAKLLLE------ 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECC-eE--------EEEEEcc-CCHHHHHHHHHHHHHhc------
Confidence 3588999999999999999998764321 11111111 00 0111111 11223444455665444
Q ss_pred hcCCeEEEEeCCCCC--HHHHHHHHHH-HcCCceEEE
Q 005630 431 HEGGQVGIFDATNSS--RKRRNMLMKM-AEGNCKIIF 464 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~--~e~R~~l~el-~~~~~~vvf 464 (687)
+-.++|+|-.+.. ...+..+.++ .+.+..+++
T Consensus 88 --~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~ 122 (144)
T cd03221 88 --NPNLLLLDEPTNHLDLESIEALEEALKEYPGTVIL 122 (144)
T ss_pred --CCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 7889999987644 5667777666 444433333
No 492
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=1.2 Score=49.82 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=72.8
Q ss_pred ccCCCccccccccccccccccccCCccccccc-ccceecccCCCCceecccccccc-----cccccccccccCCCC----
Q 005630 259 SVPDPSKVYSSSGMVESKSVGTFSPLQKQDSH-RGLFVDRGVGSPRLVKSASASTF-----NIDLKLDTETKNSMP---- 328 (687)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~r~ss~~~~-----~~~~~~~~~~~~~~p---- 328 (687)
.+.|-.|+.-..|-+.--.+|.++. +.... -+-|+++--|-|.|.|-||-+.| ...+.-.......+.
T Consensus 274 ~ltD~~Kli~tVgGlTaLAaGvYTt--keg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk 351 (630)
T KOG0742|consen 274 FLTDWNKLIATVGGLTALAAGVYTT--KEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGK 351 (630)
T ss_pred HhhhhHhHHHHhhhHHHHHhhheec--cccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCC
Confidence 3456666666666666677777766 22222 25678888999999998885222 111111101111000
Q ss_pred Cc-cchhh-------HHHHhhhhcCCC-CCccE-EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 329 AA-AGAVA-------AAAVADQMLGPK-EHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 329 ~~-~~~~a-------~a~l~~~~~~~~-~~~~~-lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+ .|-+- --+|+..+..++ ++.|+ -|+|.|.||+|||-+|+.|+++ -|.+--++.+||+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~---SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARH---SGLDYAIMTGGDV 420 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhh---cCCceehhcCCCc
Confidence 00 01111 123343433333 45555 5899999999999999999988 5566666655555
No 493
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.37 E-value=0.68 Score=47.09 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=27.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+.-++++.|-||+|||++|..++...-..+..+-.++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3568899999999999999999876444455554443
No 494
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.37 E-value=0.9 Score=47.51 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-+++.|.||.||||-...||+.|-
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHh
Confidence 478899999999999999999863
No 495
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=92.35 E-value=0.45 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
-|+++|-+++|||||..+|...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 496
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.32 E-value=0.16 Score=55.40 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.-++|+|-+|+|||+||.+++..+...|.++..+...++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 459999999999999999999999888888777766544
No 497
>PRK08840 replicative DNA helicase; Provisional
Probab=92.32 E-value=1.4 Score=50.56 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhH-----HHhhC---CCCCCCCcCCCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR-----RLKHG---VNQSADFFRADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyR-----r~~~g---~~~~~~f~~~~~e~~~~~~~~vA~ 420 (687)
+.-+|++.|.||.|||++|-.++..... .+..+-+|+..--. |.+.. .....-....-+.+.+..+...+.
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMG 295 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 5569999999999999999888877642 36666666553222 11111 111000011123333333333222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEE
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLE 466 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~-~~~vvfIE 466 (687)
. +.......|.|....+. +-|..++.+ .++ ++.+++|+
T Consensus 296 ~--------l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvID 336 (464)
T PRK08840 296 I--------LMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVD 336 (464)
T ss_pred H--------HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 2 32234577777766665 457778777 443 47788875
No 498
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.32 E-value=0.88 Score=49.04 Aligned_cols=119 Identities=12% Similarity=0.052 Sum_probs=59.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCC-CCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~-~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
+..|+++|-+||||||++++|...+........++...+.++.... .... .+....... .+.++.+.+|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~-~~~~v~~~~~~~~~---~~~~~l~~aLR----- 202 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA-APNVVQLRTSDDAI---SMTRLLKATLR----- 202 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC-CCCEEEEEecCCCC---CHHHHHHHHhc-----
Confidence 3478899999999999999999887642112334444555553221 1111 111111110 22233333333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhh
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r 482 (687)
..-..+|+.=.-.. +--+.+.. ...|..-.+--+++++....-.|+..-
T Consensus 203 --~~pD~iivGEiR~~-ea~~~l~a-~~tGh~G~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 203 --LRPDRIIVGEVRGG-EALDLLKA-WNTGHPGGIATIHANNAKAALDRLEQL 251 (299)
T ss_pred --CCCCEEEEeccCCH-HHHHHHHH-HHcCCCCeEEeeccCCHHHHHHHHHHH
Confidence 34556666555443 33333333 333332224445677766666677544
No 499
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.31 E-value=0.11 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+-.++++|.||+||||+|+.++..+++
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 346789999999999999999999764
No 500
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.29 E-value=0.16 Score=49.40 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=33.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.++.+-+|+||||+|..|+..+...|.++-++|.|-
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4577899999999999999999999999999998753
Done!