Query 005630
Match_columns 687
No_of_seqs 505 out of 2955
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 02:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 4.2E-61 1.4E-65 542.9 35.8 330 349-686 33-370 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 4.1E-59 1.4E-63 519.8 36.3 331 348-686 36-373 (469)
3 1fzt_A Phosphoglycerate mutase 99.9 1.6E-25 5.4E-30 223.3 11.9 131 553-686 1-140 (211)
4 1h2e_A Phosphatase, YHFR; hydr 99.9 8.1E-25 2.8E-29 217.9 12.1 123 560-686 2-129 (207)
5 2a6p_A Possible phosphoglycera 99.9 1.7E-24 5.7E-29 216.1 10.7 126 552-686 3-131 (208)
6 3kkk_A Phosphoglycerate mutase 99.9 1.4E-23 4.7E-28 215.0 12.4 131 554-686 6-169 (258)
7 1e58_A Phosphoglycerate mutase 99.9 1.5E-23 5.3E-28 213.8 11.7 126 559-686 2-160 (249)
8 3d8h_A Glycolytic phosphoglyce 99.9 4.4E-23 1.5E-27 213.4 13.2 126 559-686 20-178 (267)
9 1yfk_A Phosphoglycerate mutase 99.9 5.2E-23 1.8E-27 212.1 13.6 127 558-686 2-163 (262)
10 3gp3_A 2,3-bisphosphoglycerate 99.9 2.7E-23 9.2E-28 212.9 11.1 129 556-686 6-167 (257)
11 3hjg_A Putative alpha-ribazole 99.9 1.7E-23 5.8E-28 209.6 8.5 122 557-686 3-129 (213)
12 2hhj_A Bisphosphoglycerate mut 99.9 3.5E-23 1.2E-27 214.0 11.0 127 558-686 2-165 (267)
13 4emb_A 2,3-bisphosphoglycerate 99.9 8.8E-23 3E-27 211.6 13.2 127 558-686 26-185 (274)
14 1qhf_A Protein (phosphoglycera 99.9 8.5E-23 2.9E-27 207.2 12.3 125 560-686 1-158 (240)
15 4eo9_A 2,3-bisphosphoglycerate 99.9 1.1E-22 3.8E-27 210.3 12.4 126 559-686 27-183 (268)
16 1rii_A 2,3-bisphosphoglycerate 99.9 1E-22 3.6E-27 211.0 11.2 126 559-686 4-160 (265)
17 2qni_A AGR_C_517P, uncharacter 99.9 1.8E-22 6E-27 203.7 11.3 123 554-686 16-141 (219)
18 3dcy_A Regulator protein; OMIM 99.9 1.9E-22 6.4E-27 209.4 9.4 124 555-686 4-137 (275)
19 1v37_A Phosphoglycerate mutase 99.9 1E-22 3.5E-27 198.4 6.3 115 560-686 1-117 (177)
20 3e9c_A ZGC:56074; histidine ph 99.9 3E-22 1E-26 206.8 8.9 121 558-686 2-132 (265)
21 3f3k_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 206.4 6.7 125 557-686 3-148 (265)
22 3r7a_A Phosphoglycerate mutase 99.9 8.5E-22 2.9E-26 199.2 9.4 123 558-686 12-158 (237)
23 3d4i_A STS-2 protein; PGM, 2H- 99.8 1.6E-20 5.6E-25 193.9 6.2 126 556-686 6-179 (273)
24 3c7t_A Ecdysteroid-phosphate p 99.8 3.9E-20 1.3E-24 190.3 7.2 125 558-686 3-169 (263)
25 3mbk_A Ubiquitin-associated an 99.8 1.1E-19 3.6E-24 187.1 6.7 103 580-686 54-170 (264)
26 2z0b_A GDE5, KIAA1434, putativ 99.7 2.2E-17 7.5E-22 154.3 10.3 90 27-118 5-108 (131)
27 1ac0_A Glucoamylase; hydrolase 99.7 1.6E-17 5.5E-22 149.9 7.9 90 28-121 4-97 (108)
28 3eoz_A Putative phosphoglycera 99.6 8.1E-17 2.8E-21 161.2 6.0 109 557-686 19-131 (214)
29 3mxo_A Serine/threonine-protei 99.6 4.5E-16 1.5E-20 153.8 9.3 107 556-686 7-117 (202)
30 3bmv_A Cyclomaltodextrin gluca 99.6 4.3E-15 1.5E-19 172.7 11.0 96 27-126 580-679 (683)
31 1d3c_A Cyclodextrin glycosyltr 99.6 4.5E-15 1.5E-19 172.6 11.0 96 27-126 583-682 (686)
32 1cyg_A Cyclodextrin glucanotra 99.6 4.8E-15 1.6E-19 172.2 11.0 97 27-126 576-676 (680)
33 1ujc_A Phosphohistidine phosph 99.5 3.1E-14 1.1E-18 136.2 8.9 63 560-626 1-63 (161)
34 2rfl_A Putative phosphohistidi 99.5 3.1E-14 1.1E-18 137.8 8.0 80 559-642 8-94 (173)
35 1vem_A Beta-amylase; beta-alph 99.5 1.2E-13 4.1E-18 155.6 11.2 97 27-126 416-514 (516)
36 2vn4_A Glucoamylase; hydrolase 99.4 7.8E-13 2.7E-17 151.5 12.4 89 27-119 493-585 (599)
37 1gcy_A Glucan 1,4-alpha-maltot 99.3 8.6E-14 2.9E-18 157.1 0.0 91 27-118 427-519 (527)
38 3zvl_A Bifunctional polynucleo 99.3 3.2E-12 1.1E-16 140.3 11.3 138 348-527 255-396 (416)
39 4hbz_A Putative phosphohistidi 99.3 1.1E-12 3.7E-17 129.3 6.7 75 558-637 18-93 (186)
40 1ly1_A Polynucleotide kinase; 99.3 3.3E-12 1.1E-16 121.4 9.7 120 351-483 2-127 (181)
41 1qho_A Alpha-amylase; glycosid 99.3 2.8E-12 9.4E-17 149.2 10.6 90 27-119 578-675 (686)
42 3f2i_A ALR0221 protein; alpha- 99.3 1.4E-12 4.6E-17 127.0 6.7 65 560-626 1-65 (172)
43 2rhm_A Putative kinase; P-loop 99.3 3.3E-11 1.1E-15 116.0 14.4 123 350-484 4-127 (193)
44 3fjy_A Probable MUTT1 protein; 99.2 2.4E-12 8.2E-17 138.6 3.9 89 556-648 179-271 (364)
45 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 8.7E-11 3E-15 120.5 14.7 116 350-482 3-120 (260)
46 2yvu_A Probable adenylyl-sulfa 99.2 1.4E-10 4.8E-15 112.0 14.0 119 350-480 12-131 (186)
47 1m8p_A Sulfate adenylyltransfe 99.2 2E-10 6.8E-15 131.1 16.3 140 326-478 371-512 (573)
48 1ltq_A Polynucleotide kinase; 99.2 2.1E-10 7.2E-15 118.9 14.4 121 351-483 2-127 (301)
49 3uie_A Adenylyl-sulfate kinase 99.1 7.8E-10 2.7E-14 108.4 14.3 117 350-479 24-140 (200)
50 1qhx_A CPT, protein (chloramph 99.1 7E-10 2.4E-14 105.7 13.5 124 351-483 3-134 (178)
51 1gvn_B Zeta; postsegregational 99.1 1E-09 3.4E-14 114.7 15.0 152 348-508 30-187 (287)
52 1x6v_B Bifunctional 3'-phospho 99.1 6.7E-10 2.3E-14 127.6 14.8 121 348-480 49-170 (630)
53 1m7g_A Adenylylsulfate kinase; 99.1 1E-09 3.5E-14 108.5 13.2 117 350-478 24-148 (211)
54 2gks_A Bifunctional SAT/APS ki 99.1 7.5E-10 2.6E-14 125.7 13.8 144 323-480 344-488 (546)
55 3t61_A Gluconokinase; PSI-biol 99.0 7.2E-10 2.5E-14 108.4 9.4 116 350-484 17-133 (202)
56 2p5t_B PEZT; postsegregational 99.0 1.3E-09 4.3E-14 111.3 11.6 126 348-483 29-158 (253)
57 2c95_A Adenylate kinase 1; tra 98.9 2.1E-09 7.3E-14 103.5 10.2 146 350-516 8-161 (196)
58 2vli_A Antibiotic resistance p 98.9 3.3E-09 1.1E-13 101.3 11.0 121 350-483 4-126 (183)
59 1tev_A UMP-CMP kinase; ploop, 98.9 1.6E-08 5.4E-13 96.9 15.6 148 350-515 2-161 (196)
60 2pez_A Bifunctional 3'-phospho 98.9 1.2E-08 4.1E-13 97.8 14.2 118 350-479 4-122 (179)
61 2bwj_A Adenylate kinase 5; pho 98.9 8.8E-09 3E-13 99.5 13.1 145 350-516 11-164 (199)
62 3trf_A Shikimate kinase, SK; a 98.9 8.1E-10 2.8E-14 106.1 4.3 139 351-511 5-148 (185)
63 1qf9_A UMP/CMP kinase, protein 98.9 7.9E-09 2.7E-13 98.9 11.0 147 350-515 5-158 (194)
64 3vaa_A Shikimate kinase, SK; s 98.9 6.1E-09 2.1E-13 101.9 9.6 141 351-510 25-169 (199)
65 2cdn_A Adenylate kinase; phosp 98.8 1.2E-08 4.2E-13 99.5 11.6 148 348-516 17-171 (201)
66 1knq_A Gluconate kinase; ALFA/ 98.8 1.4E-08 4.6E-13 96.8 11.3 113 350-483 7-125 (175)
67 4eun_A Thermoresistant glucoki 98.8 7.1E-09 2.4E-13 101.5 9.2 113 350-483 28-146 (200)
68 3lw7_A Adenylate kinase relate 98.8 2.8E-08 9.6E-13 92.8 12.8 118 352-483 2-123 (179)
69 3umf_A Adenylate kinase; rossm 98.8 8.1E-08 2.8E-12 96.7 14.3 146 346-516 24-181 (217)
70 1aky_A Adenylate kinase; ATP:A 98.7 2.8E-08 9.6E-13 98.4 10.3 121 350-483 3-133 (220)
71 3cm0_A Adenylate kinase; ATP-b 98.7 1.6E-08 5.5E-13 96.9 7.5 115 350-483 3-127 (186)
72 1ukz_A Uridylate kinase; trans 98.7 4.6E-07 1.6E-11 88.1 17.8 120 349-483 13-142 (203)
73 2iyv_A Shikimate kinase, SK; t 98.7 1.1E-08 3.8E-13 98.2 5.8 136 352-510 3-141 (184)
74 3fb4_A Adenylate kinase; psych 98.7 5.6E-09 1.9E-13 102.8 2.9 148 353-517 2-183 (216)
75 3dl0_A Adenylate kinase; phosp 98.7 8.9E-09 3E-13 101.5 3.7 116 353-482 2-127 (216)
76 3be4_A Adenylate kinase; malar 98.7 2.8E-08 9.7E-13 98.6 7.3 120 350-483 4-133 (217)
77 3cr8_A Sulfate adenylyltranfer 98.6 1.2E-07 4.2E-12 107.7 12.4 119 349-480 367-487 (552)
78 3tlx_A Adenylate kinase 2; str 98.6 2.5E-07 8.6E-12 93.8 13.0 150 349-517 27-212 (243)
79 1nks_A Adenylate kinase; therm 98.6 9.3E-08 3.2E-12 91.3 9.3 39 352-390 2-40 (194)
80 3kb2_A SPBC2 prophage-derived 98.6 1.6E-07 5.4E-12 88.2 10.6 33 353-385 3-35 (173)
81 1kht_A Adenylate kinase; phosp 98.6 6.6E-08 2.2E-12 92.4 7.2 40 351-390 3-42 (192)
82 2pt5_A Shikimate kinase, SK; a 98.6 1.2E-07 4E-12 89.3 8.4 134 353-509 2-137 (168)
83 1e6c_A Shikimate kinase; phosp 98.5 1E-07 3.4E-12 90.1 6.5 38 352-394 3-40 (173)
84 1zd8_A GTP:AMP phosphotransfer 98.5 5.8E-08 2E-12 96.8 4.7 32 350-381 6-37 (227)
85 2plr_A DTMP kinase, probable t 98.5 1.2E-06 4.1E-11 85.0 13.9 30 350-379 3-32 (213)
86 1nn5_A Similar to deoxythymidy 98.5 2.4E-06 8.2E-11 83.2 15.1 37 350-386 8-44 (215)
87 2xb4_A Adenylate kinase; ATP-b 98.5 2.7E-07 9.2E-12 92.1 8.3 117 352-483 1-127 (223)
88 1via_A Shikimate kinase; struc 98.5 8.1E-08 2.8E-12 91.6 4.2 133 353-510 6-139 (175)
89 3sr0_A Adenylate kinase; phosp 98.5 1.9E-06 6.4E-11 85.9 14.2 144 352-517 1-173 (206)
90 4eaq_A DTMP kinase, thymidylat 98.4 3.5E-06 1.2E-10 85.0 16.0 32 350-382 25-56 (229)
91 1ak2_A Adenylate kinase isoenz 98.4 1.5E-07 5.2E-12 94.3 6.0 30 350-379 15-44 (233)
92 3nwj_A ATSK2; P loop, shikimat 98.4 2.4E-07 8.1E-12 95.2 5.8 139 351-511 48-199 (250)
93 2ze6_A Isopentenyl transferase 98.4 1E-06 3.5E-11 90.0 10.4 118 352-484 2-140 (253)
94 2bdt_A BH3686; alpha-beta prot 98.4 5.2E-06 1.8E-10 79.8 14.3 113 352-483 3-123 (189)
95 1zuh_A Shikimate kinase; alpha 98.3 4.7E-07 1.6E-11 85.6 6.0 39 352-395 8-46 (168)
96 1e4v_A Adenylate kinase; trans 98.3 3.7E-07 1.3E-11 90.1 5.3 33 353-390 2-34 (214)
97 2qor_A Guanylate kinase; phosp 98.3 9.6E-07 3.3E-11 86.5 7.8 27 350-376 11-37 (204)
98 1zak_A Adenylate kinase; ATP:A 98.3 9.1E-07 3.1E-11 87.6 7.1 34 350-383 4-37 (222)
99 1kag_A SKI, shikimate kinase I 98.3 8.6E-07 2.9E-11 83.8 6.4 37 351-392 4-40 (173)
100 2pbr_A DTMP kinase, thymidylat 98.2 1.9E-06 6.5E-11 82.4 8.4 30 352-381 1-30 (195)
101 1g8f_A Sulfate adenylyltransfe 98.2 8.1E-07 2.8E-11 100.0 5.6 68 322-389 366-435 (511)
102 3iij_A Coilin-interacting nucl 98.2 1.2E-06 4E-11 83.7 5.7 38 350-392 10-47 (180)
103 2z0h_A DTMP kinase, thymidylat 98.2 1.5E-05 5E-10 76.5 12.7 32 352-383 1-32 (197)
104 2wwf_A Thymidilate kinase, put 98.2 1.3E-06 4.4E-11 85.1 5.2 37 350-386 9-45 (212)
105 4tmk_A Protein (thymidylate ki 98.1 8.2E-05 2.8E-09 74.4 17.3 30 351-380 3-32 (213)
106 4edh_A DTMP kinase, thymidylat 98.1 0.0002 6.8E-09 71.5 19.3 36 350-385 5-40 (213)
107 3lv8_A DTMP kinase, thymidylat 98.0 0.00015 5E-09 73.8 17.8 36 350-385 26-62 (236)
108 3gmt_A Adenylate kinase; ssgci 98.0 2.6E-05 8.7E-10 79.2 11.2 145 350-517 7-187 (230)
109 1uj2_A Uridine-cytidine kinase 98.0 2.1E-05 7.2E-10 79.7 10.4 42 349-390 20-66 (252)
110 3hdt_A Putative kinase; struct 98.0 4E-05 1.4E-09 77.2 12.3 36 350-385 13-48 (223)
111 1y63_A LMAJ004144AAA protein; 98.0 5.5E-06 1.9E-10 79.9 5.4 36 350-390 9-45 (184)
112 1zp6_A Hypothetical protein AT 98.0 0.0001 3.5E-09 70.5 14.3 119 350-482 8-126 (191)
113 3fdi_A Uncharacterized protein 97.9 1.9E-05 6.5E-10 78.0 8.7 31 351-381 6-36 (201)
114 3v9p_A DTMP kinase, thymidylat 97.9 3.1E-05 1E-09 78.4 10.4 36 350-385 24-63 (227)
115 2jaq_A Deoxyguanosine kinase; 97.9 4.2E-05 1.4E-09 73.5 10.5 25 353-377 2-26 (205)
116 3tr0_A Guanylate kinase, GMP k 97.9 6.5E-05 2.2E-09 72.6 11.0 25 351-375 7-31 (205)
117 2f6r_A COA synthase, bifunctio 97.8 9E-05 3.1E-09 76.7 12.3 37 349-391 73-109 (281)
118 1gtv_A TMK, thymidylate kinase 97.8 7.9E-06 2.7E-10 79.6 3.6 31 353-383 2-32 (214)
119 4gp7_A Metallophosphoesterase; 97.8 0.0002 7E-09 68.2 13.4 114 350-483 8-122 (171)
120 1vht_A Dephospho-COA kinase; s 97.8 7.9E-05 2.7E-09 73.3 10.1 37 350-392 3-39 (218)
121 3a8t_A Adenylate isopentenyltr 97.8 8.6E-05 2.9E-09 79.4 10.8 37 349-385 38-74 (339)
122 2grj_A Dephospho-COA kinase; T 97.8 0.00015 5.3E-09 71.2 11.9 38 348-390 9-46 (192)
123 4hlc_A DTMP kinase, thymidylat 97.8 0.0016 5.4E-08 64.5 19.3 32 352-384 3-34 (205)
124 1uf9_A TT1252 protein; P-loop, 97.7 0.00012 4.2E-09 70.4 10.5 38 348-391 5-42 (203)
125 3ake_A Cytidylate kinase; CMP 97.7 0.00012 4.1E-09 70.7 10.0 35 353-392 4-38 (208)
126 3tau_A Guanylate kinase, GMP k 97.7 2.8E-05 9.7E-10 76.5 5.5 27 350-376 7-33 (208)
127 3crm_A TRNA delta(2)-isopenten 97.7 0.00013 4.4E-09 77.6 10.4 33 351-383 5-37 (323)
128 2bbw_A Adenylate kinase 4, AK4 97.7 0.00023 7.8E-09 71.5 11.7 31 350-380 26-56 (246)
129 3a00_A Guanylate kinase, GMP k 97.6 0.00011 3.7E-09 70.9 7.5 25 352-376 2-26 (186)
130 1jjv_A Dephospho-COA kinase; P 97.6 0.0012 4.1E-08 64.0 14.8 35 352-392 3-37 (206)
131 1ex7_A Guanylate kinase; subst 97.5 0.00026 9E-09 69.4 9.8 24 353-376 3-26 (186)
132 3ld9_A DTMP kinase, thymidylat 97.5 0.00011 3.7E-09 74.2 7.1 36 349-384 19-55 (223)
133 4i1u_A Dephospho-COA kinase; s 97.5 0.00028 9.7E-09 70.6 9.9 120 349-483 7-153 (210)
134 2if2_A Dephospho-COA kinase; a 97.5 0.00017 5.7E-09 69.9 7.5 34 353-392 3-36 (204)
135 2h92_A Cytidylate kinase; ross 97.5 0.001 3.5E-08 65.1 12.6 35 351-390 3-37 (219)
136 2laa_A Beta/alpha-amylase; SBD 97.4 0.00026 8.9E-09 63.3 7.3 77 27-117 3-80 (104)
137 2v54_A DTMP kinase, thymidylat 97.4 0.00031 1.1E-08 67.7 7.8 26 350-375 3-28 (204)
138 2qt1_A Nicotinamide riboside k 97.4 0.00065 2.2E-08 66.1 10.1 37 350-390 20-56 (207)
139 3dm5_A SRP54, signal recogniti 97.3 0.00073 2.5E-08 74.7 10.9 43 350-392 99-141 (443)
140 2j41_A Guanylate kinase; GMP, 97.3 0.00054 1.9E-08 66.0 8.5 25 351-375 6-30 (207)
141 3hjn_A DTMP kinase, thymidylat 97.3 0.0047 1.6E-07 60.6 15.3 34 352-385 1-34 (197)
142 1s96_A Guanylate kinase, GMP k 97.1 0.0027 9.1E-08 63.5 11.6 121 350-482 15-150 (219)
143 3ch4_B Pmkase, phosphomevalona 97.0 0.0065 2.2E-07 60.4 13.1 39 350-390 10-48 (202)
144 1a7j_A Phosphoribulokinase; tr 97.0 0.00036 1.2E-08 72.8 4.1 42 350-391 4-45 (290)
145 1rz3_A Hypothetical protein rb 97.0 0.0013 4.3E-08 64.2 7.4 44 348-391 19-62 (201)
146 3kl4_A SRP54, signal recogniti 96.9 0.0027 9.4E-08 70.0 10.3 44 349-392 95-138 (433)
147 1cke_A CK, MSSA, protein (cyti 96.9 0.00037 1.3E-08 68.4 2.6 36 351-391 5-40 (227)
148 1vma_A Cell division protein F 96.8 0.0046 1.6E-07 65.1 10.9 43 349-391 102-144 (306)
149 1kgd_A CASK, peripheral plasma 96.8 0.001 3.6E-08 63.6 5.3 26 351-376 5-30 (180)
150 3ec2_A DNA replication protein 96.7 0.0063 2.2E-07 57.7 9.8 40 351-390 38-78 (180)
151 3r20_A Cytidylate kinase; stru 96.7 0.00057 2E-08 69.4 2.3 37 350-391 8-44 (233)
152 3d3q_A TRNA delta(2)-isopenten 96.7 0.0026 8.7E-08 68.1 7.3 27 351-377 7-33 (340)
153 3tmk_A Thymidylate kinase; pho 96.6 0.0064 2.2E-07 60.8 9.8 28 350-377 4-31 (216)
154 2j37_W Signal recognition part 96.6 0.0077 2.6E-07 67.7 10.9 43 349-391 99-141 (504)
155 2xxa_A Signal recognition part 96.6 0.0057 2E-07 67.4 9.5 43 349-391 98-141 (433)
156 1zu4_A FTSY; GTPase, signal re 96.5 0.012 4.1E-07 62.2 11.0 43 349-391 103-145 (320)
157 3foz_A TRNA delta(2)-isopenten 96.4 0.0048 1.6E-07 65.3 7.4 29 350-378 9-37 (316)
158 3t15_A Ribulose bisphosphate c 96.4 0.0064 2.2E-07 63.0 8.3 40 348-390 33-72 (293)
159 3lnc_A Guanylate kinase, GMP k 96.4 0.0078 2.7E-07 59.6 8.4 25 351-375 27-52 (231)
160 3c8u_A Fructokinase; YP_612366 96.4 0.0053 1.8E-07 59.9 7.0 41 348-388 19-59 (208)
161 4e22_A Cytidylate kinase; P-lo 96.4 0.0011 3.7E-08 67.3 2.0 30 350-379 26-55 (252)
162 1q3t_A Cytidylate kinase; nucl 96.3 0.0013 4.3E-08 65.7 2.4 38 350-392 15-52 (236)
163 2chg_A Replication factor C sm 96.3 0.016 5.6E-07 55.0 10.1 28 354-381 41-68 (226)
164 3syl_A Protein CBBX; photosynt 96.3 0.04 1.4E-06 56.4 13.6 31 350-380 66-96 (309)
165 3exa_A TRNA delta(2)-isopenten 96.3 0.0048 1.6E-07 65.5 6.5 28 351-378 3-30 (322)
166 1odf_A YGR205W, hypothetical 3 96.3 0.0041 1.4E-07 64.9 5.9 44 347-390 27-73 (290)
167 2ffh_A Protein (FFH); SRP54, s 96.3 0.016 5.5E-07 63.7 10.8 42 350-391 97-138 (425)
168 2qby_B CDC6 homolog 3, cell di 96.2 0.018 6.2E-07 60.6 10.8 29 350-378 44-72 (384)
169 1jbk_A CLPB protein; beta barr 96.2 0.013 4.6E-07 54.2 8.6 27 351-377 43-69 (195)
170 3ney_A 55 kDa erythrocyte memb 96.2 0.0067 2.3E-07 60.0 6.5 27 350-376 18-44 (197)
171 2ocp_A DGK, deoxyguanosine kin 96.2 0.0024 8.3E-08 63.8 3.4 27 350-376 1-27 (241)
172 1j8m_F SRP54, signal recogniti 96.0 0.017 5.9E-07 60.3 9.3 40 351-390 98-137 (297)
173 3eph_A TRNA isopentenyltransfe 95.9 0.01 3.6E-07 64.8 7.2 29 351-379 2-30 (409)
174 4a1f_A DNAB helicase, replicat 95.9 0.034 1.2E-06 59.3 10.8 110 350-468 45-165 (338)
175 1p5z_B DCK, deoxycytidine kina 95.9 0.0017 5.7E-08 65.9 0.6 28 349-376 22-49 (263)
176 1xjc_A MOBB protein homolog; s 95.9 0.0064 2.2E-07 58.7 4.7 36 351-386 4-39 (169)
177 1l8q_A Chromosomal replication 95.8 0.038 1.3E-06 57.3 10.8 39 352-390 38-76 (324)
178 3bos_A Putative DNA replicatio 95.8 0.0081 2.8E-07 58.4 5.3 40 351-390 52-91 (242)
179 2yhs_A FTSY, cell division pro 95.7 0.021 7E-07 64.1 8.8 43 349-391 291-333 (503)
180 3e70_C DPA, signal recognition 95.7 0.043 1.5E-06 58.2 10.8 40 349-388 127-166 (328)
181 3tqc_A Pantothenate kinase; bi 95.7 0.011 3.8E-07 62.6 6.1 43 348-390 89-133 (321)
182 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.037 1.3E-06 55.0 9.6 26 351-376 39-64 (262)
183 2z4s_A Chromosomal replication 95.7 0.08 2.7E-06 58.1 13.0 39 351-389 130-170 (440)
184 2v1u_A Cell division control p 95.6 0.034 1.2E-06 58.1 9.6 28 350-377 43-70 (387)
185 2p65_A Hypothetical protein PF 95.6 0.024 8.3E-07 52.5 7.5 27 351-377 43-69 (187)
186 1yrb_A ATP(GTP)binding protein 95.6 0.011 3.8E-07 59.0 5.5 39 349-388 12-50 (262)
187 3asz_A Uridine kinase; cytidin 95.6 0.0083 2.8E-07 58.2 4.2 27 350-376 5-31 (211)
188 2v3c_C SRP54, signal recogniti 95.6 0.0045 1.6E-07 68.2 2.6 42 350-391 98-139 (432)
189 3eie_A Vacuolar protein sortin 95.5 0.082 2.8E-06 55.1 12.1 28 350-377 50-77 (322)
190 1ofh_A ATP-dependent HSL prote 95.5 0.013 4.6E-07 59.5 5.6 36 351-389 50-85 (310)
191 2w58_A DNAI, primosome compone 95.5 0.012 4.3E-07 56.5 5.1 39 352-390 55-93 (202)
192 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.063 2.2E-06 56.3 10.7 25 351-375 45-69 (322)
193 1ls1_A Signal recognition part 95.4 0.061 2.1E-06 56.0 10.4 41 350-390 97-137 (295)
194 1u94_A RECA protein, recombina 95.3 0.064 2.2E-06 57.5 10.6 37 351-387 63-99 (356)
195 1sq5_A Pantothenate kinase; P- 95.3 0.018 6E-07 60.2 6.1 42 349-390 78-121 (308)
196 2cvh_A DNA repair and recombin 95.3 0.045 1.5E-06 52.8 8.5 34 351-387 20-53 (220)
197 2qp9_X Vacuolar protein sortin 95.3 0.069 2.4E-06 56.8 10.5 26 351-376 84-109 (355)
198 3h4m_A Proteasome-activating n 95.2 0.048 1.6E-06 55.2 8.7 26 351-376 51-76 (285)
199 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.046 1.6E-06 58.1 8.8 24 351-374 123-146 (331)
200 3te6_A Regulatory protein SIR3 95.2 0.14 4.8E-06 54.1 12.5 29 349-377 43-71 (318)
201 2px0_A Flagellar biosynthesis 95.2 0.011 3.9E-07 61.6 4.1 42 350-391 104-146 (296)
202 1um8_A ATP-dependent CLP prote 95.2 0.019 6.6E-07 61.0 6.0 25 352-376 73-97 (376)
203 2q6t_A DNAB replication FORK h 95.2 0.2 6.8E-06 54.9 14.2 109 350-467 199-318 (444)
204 4b4t_M 26S protease regulatory 95.1 0.04 1.4E-06 60.7 8.4 29 350-378 214-242 (434)
205 1iqp_A RFCS; clamp loader, ext 95.1 0.055 1.9E-06 55.3 8.7 24 354-377 49-72 (327)
206 3b9p_A CG5977-PA, isoform A; A 95.0 0.046 1.6E-06 55.7 8.0 26 351-376 54-79 (297)
207 4b4t_J 26S protease regulatory 95.0 0.038 1.3E-06 60.4 7.6 28 351-378 182-209 (405)
208 2kjq_A DNAA-related protein; s 95.0 0.019 6.4E-07 53.7 4.5 36 352-387 37-72 (149)
209 1rj9_A FTSY, signal recognitio 94.9 0.017 5.7E-07 60.7 4.4 39 350-388 101-139 (304)
210 3p32_A Probable GTPase RV1496/ 94.9 0.023 7.8E-07 60.5 5.5 40 349-388 77-116 (355)
211 3bh0_A DNAB-like replicative h 94.9 0.17 5.9E-06 52.8 12.2 38 350-387 67-104 (315)
212 2jeo_A Uridine-cytidine kinase 94.9 0.02 7E-07 57.3 4.7 29 350-378 24-52 (245)
213 3b9q_A Chloroplast SRP recepto 94.8 0.021 7E-07 59.9 4.8 37 350-386 99-135 (302)
214 4b4t_L 26S protease subunit RP 94.8 0.046 1.6E-06 60.3 7.5 29 350-378 214-242 (437)
215 2ga8_A Hypothetical 39.9 kDa p 94.7 0.02 7E-07 61.5 4.4 30 350-379 23-52 (359)
216 2zr9_A Protein RECA, recombina 94.7 0.1 3.6E-06 55.6 9.9 37 351-387 61-97 (349)
217 4b4t_I 26S protease regulatory 94.7 0.051 1.8E-06 59.8 7.6 29 350-378 215-243 (437)
218 2og2_A Putative signal recogni 94.7 0.023 8E-07 61.1 4.8 40 349-388 155-194 (359)
219 4b4t_H 26S protease regulatory 94.6 0.046 1.6E-06 60.7 7.2 29 350-378 242-270 (467)
220 2qby_A CDC6 homolog 1, cell di 94.6 0.094 3.2E-06 54.6 9.3 38 350-387 44-84 (386)
221 4b4t_K 26S protease regulatory 94.6 0.055 1.9E-06 59.5 7.8 29 350-378 205-233 (428)
222 1np6_A Molybdopterin-guanine d 94.6 0.03 1E-06 54.0 5.0 34 352-385 7-40 (174)
223 3pvs_A Replication-associated 94.6 0.062 2.1E-06 59.3 8.0 24 353-376 52-75 (447)
224 3u61_B DNA polymerase accessor 94.5 0.1 3.5E-06 53.9 9.2 27 350-376 47-73 (324)
225 3hr8_A Protein RECA; alpha and 94.5 0.19 6.5E-06 53.9 11.5 38 350-387 60-97 (356)
226 1fnn_A CDC6P, cell division co 94.4 0.11 3.8E-06 54.3 9.4 34 353-386 46-80 (389)
227 1xp8_A RECA protein, recombina 94.4 0.23 7.8E-06 53.4 11.9 38 351-388 74-111 (366)
228 3czp_A Putative polyphosphate 94.4 0.058 2E-06 60.5 7.3 110 349-484 41-170 (500)
229 3czq_A Putative polyphosphate 94.4 0.13 4.5E-06 54.0 9.5 36 350-385 85-120 (304)
230 1lv7_A FTSH; alpha/beta domain 94.3 0.023 7.7E-07 57.0 3.6 24 353-376 47-70 (257)
231 1g41_A Heat shock protein HSLU 94.3 0.083 2.9E-06 58.4 8.3 27 351-377 50-76 (444)
232 3vfd_A Spastin; ATPase, microt 94.3 0.091 3.1E-06 56.2 8.5 26 351-376 148-173 (389)
233 3d8b_A Fidgetin-like protein 1 94.3 0.12 4E-06 54.9 9.2 27 350-376 116-142 (357)
234 4fcw_A Chaperone protein CLPB; 94.2 0.041 1.4E-06 56.2 5.3 36 352-387 48-83 (311)
235 2orw_A Thymidine kinase; TMTK, 94.1 0.037 1.2E-06 53.5 4.4 35 351-385 3-37 (184)
236 1sxj_B Activator 1 37 kDa subu 94.1 0.064 2.2E-06 54.7 6.5 24 354-377 45-68 (323)
237 2r8r_A Sensor protein; KDPD, P 94.1 0.053 1.8E-06 54.8 5.7 41 349-389 4-44 (228)
238 3bgw_A DNAB-like replicative h 94.0 0.47 1.6E-05 52.2 13.6 38 350-387 196-233 (444)
239 1njg_A DNA polymerase III subu 94.0 0.035 1.2E-06 53.1 3.9 27 352-378 46-72 (250)
240 2qgz_A Helicase loader, putati 93.9 0.049 1.7E-06 57.0 5.1 40 351-390 152-192 (308)
241 3aez_A Pantothenate kinase; tr 93.9 0.04 1.4E-06 57.9 4.5 29 349-377 88-116 (312)
242 2r6a_A DNAB helicase, replicat 93.8 0.23 7.9E-06 54.5 10.7 108 350-466 202-320 (454)
243 3rhf_A Putative polyphosphate 93.8 0.11 3.8E-06 54.1 7.5 110 349-484 73-202 (289)
244 1d2n_A N-ethylmaleimide-sensit 93.8 0.047 1.6E-06 55.2 4.6 28 349-376 62-89 (272)
245 2z43_A DNA repair and recombin 93.7 0.14 5E-06 53.5 8.5 25 351-375 107-131 (324)
246 3n70_A Transport activator; si 93.7 0.035 1.2E-06 51.0 3.2 30 354-383 27-56 (145)
247 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.059 2E-06 52.1 4.9 37 351-387 23-59 (235)
248 2r2a_A Uncharacterized protein 93.6 0.045 1.6E-06 53.9 4.0 26 350-375 4-29 (199)
249 1lvg_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 54.2 2.9 26 351-376 4-29 (198)
250 1nd6_A Prostatic acid phosphat 93.5 0.13 4.5E-06 53.9 7.8 65 562-626 7-87 (354)
251 3cf0_A Transitional endoplasmi 93.5 0.033 1.1E-06 57.7 2.9 26 351-376 49-74 (301)
252 1z0n_A 5'-AMP-activated protei 93.5 0.12 3.9E-06 45.2 6.0 53 30-95 10-62 (96)
253 2b8t_A Thymidine kinase; deoxy 93.4 0.075 2.6E-06 53.3 5.4 38 349-386 10-47 (223)
254 2dyk_A GTP-binding protein; GT 93.4 0.02 6.7E-07 51.9 1.0 22 353-374 3-24 (161)
255 1ye8_A Protein THEP1, hypothet 93.4 0.045 1.5E-06 52.7 3.5 24 353-376 2-25 (178)
256 2r62_A Cell division protease 93.4 0.024 8.3E-07 56.9 1.7 24 354-377 47-70 (268)
257 1v5w_A DMC1, meiotic recombina 93.4 0.3 1E-05 51.6 10.3 25 350-374 121-145 (343)
258 2wsm_A Hydrogenase expression/ 93.3 0.076 2.6E-06 51.4 5.1 28 350-377 29-56 (221)
259 1q57_A DNA primase/helicase; d 93.3 0.41 1.4E-05 53.1 11.7 39 350-388 241-280 (503)
260 3hws_A ATP-dependent CLP prote 93.3 0.031 1.1E-06 59.2 2.5 26 351-376 51-76 (363)
261 4dzz_A Plasmid partitioning pr 93.3 0.2 7E-06 47.6 8.0 37 352-388 3-39 (206)
262 2ce7_A Cell division protein F 93.3 0.14 4.7E-06 57.1 7.7 24 353-376 51-74 (476)
263 3lda_A DNA repair protein RAD5 93.3 0.23 8E-06 54.0 9.4 25 350-374 177-201 (400)
264 2x8a_A Nuclear valosin-contain 93.3 0.039 1.3E-06 56.7 3.1 23 354-376 47-69 (274)
265 2qmh_A HPR kinase/phosphorylas 93.2 0.032 1.1E-06 55.5 2.3 27 350-376 33-59 (205)
266 3czp_A Putative polyphosphate 93.2 0.11 3.7E-06 58.3 6.8 110 349-484 298-427 (500)
267 1ixz_A ATP-dependent metallopr 93.2 0.04 1.4E-06 55.0 3.0 23 354-376 52-74 (254)
268 2bjv_A PSP operon transcriptio 93.1 0.052 1.8E-06 54.5 3.7 36 353-388 31-66 (265)
269 1xx6_A Thymidine kinase; NESG, 93.1 0.1 3.5E-06 51.0 5.6 37 350-386 7-43 (191)
270 3zq6_A Putative arsenical pump 93.0 0.11 3.9E-06 54.3 6.2 39 351-389 14-52 (324)
271 2dr3_A UPF0273 protein PH0284; 92.9 0.085 2.9E-06 51.6 4.9 37 351-387 23-59 (247)
272 2xtp_A GTPase IMAP family memb 92.9 0.24 8.2E-06 49.5 8.2 24 350-373 21-44 (260)
273 1dek_A Deoxynucleoside monopho 92.8 0.051 1.7E-06 55.2 3.1 25 352-376 2-26 (241)
274 2www_A Methylmalonic aciduria 92.8 0.11 3.9E-06 55.2 5.9 38 349-386 72-109 (349)
275 3ug7_A Arsenical pump-driving 92.8 0.1 3.6E-06 55.4 5.6 41 349-389 24-64 (349)
276 3pxg_A Negative regulator of g 92.8 0.053 1.8E-06 59.9 3.5 25 353-377 203-227 (468)
277 2p67_A LAO/AO transport system 92.8 0.1 3.4E-06 55.3 5.4 39 349-387 54-92 (341)
278 1in4_A RUVB, holliday junction 92.8 0.058 2E-06 56.7 3.5 25 352-376 52-76 (334)
279 1w5s_A Origin recognition comp 92.7 0.78 2.7E-05 48.3 12.4 28 350-377 49-78 (412)
280 2f1r_A Molybdopterin-guanine d 92.7 0.054 1.9E-06 52.0 3.0 33 353-385 4-36 (171)
281 2zts_A Putative uncharacterize 92.6 0.27 9.3E-06 48.0 8.0 36 350-385 29-65 (251)
282 3cf2_A TER ATPase, transitiona 92.5 0.086 3E-06 62.4 4.9 36 349-387 236-271 (806)
283 1svi_A GTP-binding protein YSX 92.5 0.25 8.5E-06 46.3 7.3 24 350-373 22-45 (195)
284 1iy2_A ATP-dependent metallopr 92.5 0.058 2E-06 54.8 3.0 23 354-376 76-98 (278)
285 3uk6_A RUVB-like 2; hexameric 92.4 0.062 2.1E-06 56.3 3.3 27 351-377 70-96 (368)
286 2vp4_A Deoxynucleoside kinase; 92.4 0.055 1.9E-06 53.6 2.6 26 349-374 18-43 (230)
287 2c9o_A RUVB-like 1; hexameric 92.3 0.065 2.2E-06 58.9 3.4 27 351-377 63-89 (456)
288 2ehv_A Hypothetical protein PH 92.2 0.12 4E-06 50.7 4.8 36 351-386 30-66 (251)
289 1tue_A Replication protein E1; 92.1 0.06 2E-06 53.8 2.5 26 351-376 58-83 (212)
290 2woo_A ATPase GET3; tail-ancho 92.1 0.12 4E-06 54.5 5.0 41 350-390 18-58 (329)
291 2i3b_A HCR-ntpase, human cance 92.1 0.12 4.1E-06 50.2 4.7 31 353-383 3-33 (189)
292 3pfi_A Holliday junction ATP-d 92.1 0.059 2E-06 56.0 2.5 25 353-377 57-81 (338)
293 1znw_A Guanylate kinase, GMP k 92.0 0.073 2.5E-06 51.7 2.9 26 351-376 20-45 (207)
294 1z6g_A Guanylate kinase; struc 92.0 0.06 2.1E-06 53.1 2.3 25 351-375 23-47 (218)
295 4dcu_A GTP-binding protein ENG 91.9 0.085 2.9E-06 58.0 3.7 38 433-470 104-142 (456)
296 2hf9_A Probable hydrogenase ni 91.9 0.11 3.9E-06 50.3 4.2 27 350-376 37-63 (226)
297 4a74_A DNA repair and recombin 91.8 0.098 3.4E-06 50.6 3.6 26 350-375 24-49 (231)
298 3ntl_A Acid glucose-1-phosphat 91.8 0.41 1.4E-05 52.0 8.9 65 562-626 11-100 (398)
299 1cr0_A DNA primase/helicase; R 91.8 0.14 4.9E-06 52.3 5.0 36 351-386 35-71 (296)
300 1sxj_D Activator 1 41 kDa subu 91.8 0.094 3.2E-06 54.3 3.6 24 354-377 61-84 (353)
301 3end_A Light-independent proto 91.7 0.16 5.3E-06 52.3 5.2 39 350-388 40-78 (307)
302 1r6b_X CLPA protein; AAA+, N-t 91.6 0.37 1.3E-05 56.1 8.8 35 353-390 490-524 (758)
303 3hu3_A Transitional endoplasmi 91.5 0.27 9.2E-06 54.9 7.1 26 351-376 238-263 (489)
304 3iqw_A Tail-anchored protein t 91.5 0.15 5.2E-06 54.1 4.9 38 351-388 16-53 (334)
305 2wjg_A FEOB, ferrous iron tran 91.5 0.15 5E-06 47.6 4.3 24 350-373 6-29 (188)
306 1svm_A Large T antigen; AAA+ f 91.3 0.11 3.6E-06 56.3 3.6 27 350-376 168-194 (377)
307 1dkq_A Phytase; histidine acid 91.3 0.3 1E-05 52.9 7.2 65 562-626 12-100 (410)
308 2gza_A Type IV secretion syste 91.3 0.26 8.8E-06 52.6 6.5 124 351-484 175-301 (361)
309 3it3_A Acid phosphatase; HAP, 91.2 0.42 1.4E-05 50.6 8.0 66 561-626 11-92 (342)
310 1hqc_A RUVB; extended AAA-ATPa 91.2 0.091 3.1E-06 54.0 2.8 25 352-376 39-63 (324)
311 3co5_A Putative two-component 91.1 0.053 1.8E-06 49.8 0.8 23 354-376 30-52 (143)
312 1g8p_A Magnesium-chelatase 38 91.1 0.064 2.2E-06 55.7 1.5 23 354-376 48-70 (350)
313 2qm8_A GTPase/ATPase; G protei 91.0 0.21 7.3E-06 52.8 5.5 37 350-386 54-90 (337)
314 1n0w_A DNA repair protein RAD5 91.0 0.1 3.5E-06 51.0 2.8 25 350-374 23-47 (243)
315 1sxj_C Activator 1 40 kDa subu 91.0 0.12 4E-06 54.1 3.5 24 354-377 49-72 (340)
316 3nme_A Ptpkis1 protein, SEX4 g 90.9 0.21 7E-06 52.1 5.2 72 27-115 166-238 (294)
317 1tf7_A KAIC; homohexamer, hexa 90.9 0.48 1.6E-05 53.0 8.5 36 350-385 280-315 (525)
318 2r44_A Uncharacterized protein 90.9 0.073 2.5E-06 55.3 1.7 25 353-377 48-72 (331)
319 3pxi_A Negative regulator of g 90.8 0.12 4E-06 60.5 3.5 24 353-376 203-226 (758)
320 1u0j_A DNA replication protein 90.7 0.16 5.4E-06 52.5 4.0 30 349-378 102-131 (267)
321 3kjh_A CO dehydrogenase/acetyl 90.7 0.12 4E-06 50.6 3.0 36 354-389 3-38 (254)
322 3io5_A Recombination and repai 90.7 1 3.6E-05 47.8 10.3 34 353-386 30-65 (333)
323 2hjg_A GTP-binding protein ENG 90.7 0.44 1.5E-05 51.9 7.8 39 433-471 84-123 (436)
324 1sxj_E Activator 1 40 kDa subu 90.7 0.13 4.4E-06 53.6 3.4 26 350-376 36-61 (354)
325 1sxj_A Activator 1 95 kDa subu 90.6 0.12 4.2E-06 57.6 3.4 26 351-376 77-102 (516)
326 2eyu_A Twitching motility prot 90.6 0.19 6.6E-06 51.2 4.5 29 350-378 24-52 (261)
327 2j9r_A Thymidine kinase; TK1, 90.5 0.3 1E-05 48.8 5.7 38 349-386 26-63 (214)
328 3ea0_A ATPase, para family; al 90.5 0.26 8.8E-06 48.4 5.2 41 350-390 4-45 (245)
329 1g3q_A MIND ATPase, cell divis 90.5 0.23 7.9E-06 48.5 4.9 39 351-389 3-41 (237)
330 2afh_E Nitrogenase iron protei 90.5 0.24 8.1E-06 50.5 5.1 37 353-389 4-40 (289)
331 2ph1_A Nucleotide-binding prot 90.5 0.2 6.8E-06 50.4 4.5 41 350-390 18-58 (262)
332 3pxi_A Negative regulator of g 90.4 0.21 7.1E-06 58.4 5.2 41 350-390 519-560 (758)
333 1htw_A HI0065; nucleotide-bind 90.4 0.18 6.1E-06 47.7 3.8 26 350-375 32-57 (158)
334 2zan_A Vacuolar protein sortin 90.4 0.11 3.9E-06 56.9 2.8 25 351-375 167-191 (444)
335 2woj_A ATPase GET3; tail-ancho 90.3 0.22 7.4E-06 53.2 4.8 40 350-389 17-58 (354)
336 1cp2_A CP2, nitrogenase iron p 90.3 0.25 8.5E-06 49.5 5.0 36 353-388 3-38 (269)
337 1jr3_A DNA polymerase III subu 90.3 0.16 5.3E-06 53.1 3.6 27 351-377 38-64 (373)
338 2v9p_A Replication protein E1; 90.3 0.15 5.1E-06 53.6 3.4 25 351-375 126-150 (305)
339 3k9g_A PF-32 protein; ssgcid, 90.2 0.2 6.7E-06 50.3 4.2 40 350-390 27-66 (267)
340 3m6a_A ATP-dependent protease 90.2 0.15 5E-06 57.6 3.5 28 350-377 107-134 (543)
341 3bfv_A CAPA1, CAPB2, membrane 89.9 0.35 1.2E-05 49.5 5.8 38 352-389 83-121 (271)
342 3la6_A Tyrosine-protein kinase 89.9 0.35 1.2E-05 50.0 5.9 43 348-390 90-132 (286)
343 2chq_A Replication factor C sm 89.9 0.17 5.9E-06 51.3 3.5 23 354-376 41-63 (319)
344 3cwq_A Para family chromosome 89.9 0.3 1E-05 47.6 5.1 37 352-389 2-38 (209)
345 3cmw_A Protein RECA, recombina 89.8 0.75 2.6E-05 58.5 9.7 39 350-388 731-769 (1706)
346 3q9l_A Septum site-determining 89.8 0.28 9.6E-06 48.5 4.9 39 351-389 3-41 (260)
347 1hyq_A MIND, cell division inh 89.7 0.33 1.1E-05 48.4 5.3 39 351-389 3-41 (263)
348 1upt_A ARL1, ADP-ribosylation 89.7 0.26 8.9E-06 44.8 4.2 24 350-373 6-29 (171)
349 1nrj_B SR-beta, signal recogni 89.7 0.19 6.4E-06 48.4 3.4 26 349-374 10-35 (218)
350 3io3_A DEHA2D07832P; chaperone 89.6 0.25 8.7E-06 52.7 4.6 39 350-388 17-57 (348)
351 2gj8_A MNME, tRNA modification 89.5 0.21 7.2E-06 46.6 3.5 25 350-374 3-27 (172)
352 3bc1_A RAS-related protein RAB 89.5 0.25 8.7E-06 45.7 4.1 25 349-373 9-33 (195)
353 2wji_A Ferrous iron transport 89.5 0.22 7.4E-06 45.9 3.6 23 351-373 3-25 (165)
354 1p6x_A Thymidine kinase; P-loo 89.5 0.12 4.2E-06 55.0 2.0 29 350-378 6-34 (334)
355 1ihu_A Arsenical pump-driving 89.5 0.25 8.6E-06 55.9 4.8 38 351-388 8-45 (589)
356 1ojl_A Transcriptional regulat 89.5 0.2 6.9E-06 52.0 3.6 35 352-386 26-60 (304)
357 3tqf_A HPR(Ser) kinase; transf 89.3 0.17 5.9E-06 49.3 2.7 24 351-374 16-39 (181)
358 1nlf_A Regulatory protein REPA 89.3 0.22 7.5E-06 50.6 3.7 26 351-376 30-55 (279)
359 2ce2_X GTPase HRAS; signaling 89.2 0.25 8.6E-06 44.3 3.7 24 351-374 3-26 (166)
360 1z2a_A RAS-related protein RAB 89.2 0.25 8.7E-06 44.6 3.7 25 350-374 4-28 (168)
361 1ypw_A Transitional endoplasmi 89.2 0.8 2.7E-05 54.1 8.9 27 350-376 237-263 (806)
362 2wnh_A 3-phytase; histidine ac 89.1 0.51 1.7E-05 51.3 6.6 46 581-626 53-108 (418)
363 1c9k_A COBU, adenosylcobinamid 89.1 0.17 6E-06 49.1 2.6 22 353-374 1-22 (180)
364 1z0f_A RAB14, member RAS oncog 89.0 0.28 9.6E-06 44.8 3.9 25 350-374 14-38 (179)
365 1oix_A RAS-related protein RAB 88.9 0.25 8.4E-06 47.0 3.6 25 350-374 28-52 (191)
366 4aee_A Alpha amylase, catalyti 88.9 0.55 1.9E-05 54.5 7.1 60 27-95 14-73 (696)
367 3cio_A ETK, tyrosine-protein k 88.8 0.48 1.6E-05 49.1 5.9 39 351-389 104-143 (299)
368 2lkc_A Translation initiation 88.8 0.28 9.4E-06 45.1 3.7 24 350-373 7-30 (178)
369 1kao_A RAP2A; GTP-binding prot 88.8 0.29 9.8E-06 44.0 3.7 23 351-373 3-25 (167)
370 1m7b_A RND3/RHOE small GTP-bin 88.7 0.28 9.5E-06 45.9 3.7 26 349-374 5-30 (184)
371 2ewv_A Twitching motility prot 88.6 0.3 1E-05 52.4 4.3 29 350-378 135-163 (372)
372 3cmu_A Protein RECA, recombina 88.6 1.8 6E-05 56.0 11.8 49 340-388 1415-1464(2050)
373 1wf3_A GTP-binding protein; GT 88.6 1.4 4.9E-05 45.6 9.4 22 352-373 8-29 (301)
374 3con_A GTPase NRAS; structural 88.5 0.29 9.9E-06 45.7 3.7 25 350-374 20-44 (190)
375 3e1s_A Exodeoxyribonuclease V, 88.4 0.36 1.2E-05 54.9 5.0 34 352-385 205-238 (574)
376 2oze_A ORF delta'; para, walke 88.3 0.37 1.3E-05 49.1 4.7 41 351-391 35-77 (298)
377 3upu_A ATP-dependent DNA helic 88.3 0.39 1.3E-05 52.7 5.1 28 353-380 47-74 (459)
378 2dhr_A FTSH; AAA+ protein, hex 88.3 0.21 7.2E-06 56.0 3.0 23 354-376 67-89 (499)
379 2erx_A GTP-binding protein DI- 88.3 0.3 1E-05 44.2 3.6 23 351-373 3-25 (172)
380 2nzj_A GTP-binding protein REM 88.1 0.33 1.1E-05 44.3 3.7 24 350-373 3-26 (175)
381 1pui_A ENGB, probable GTP-bind 88.1 0.18 6.2E-06 48.1 2.0 25 350-374 25-49 (210)
382 2ged_A SR-beta, signal recogni 88.0 0.29 1E-05 45.8 3.4 26 349-374 46-71 (193)
383 1u8z_A RAS-related protein RAL 88.0 0.35 1.2E-05 43.5 3.7 24 351-374 4-27 (168)
384 3cf2_A TER ATPase, transitiona 87.9 0.52 1.8E-05 55.8 6.1 28 351-378 511-538 (806)
385 1nij_A Hypothetical protein YJ 87.9 0.25 8.5E-06 51.7 3.0 23 352-374 5-27 (318)
386 1of1_A Thymidine kinase; trans 87.8 0.23 7.7E-06 53.8 2.7 31 349-379 47-77 (376)
387 2hxs_A RAB-26, RAS-related pro 87.8 0.41 1.4E-05 43.9 4.2 24 350-373 5-28 (178)
388 3q85_A GTP-binding protein REM 87.7 0.28 9.7E-06 44.6 3.0 21 352-372 3-23 (169)
389 4dsu_A GTPase KRAS, isoform 2B 87.7 0.35 1.2E-05 44.7 3.7 25 350-374 3-27 (189)
390 3fkq_A NTRC-like two-domain pr 87.6 0.49 1.7E-05 50.4 5.3 39 350-388 143-181 (373)
391 3q72_A GTP-binding protein RAD 87.6 0.27 9.2E-06 44.6 2.8 20 353-372 4-23 (166)
392 1c1y_A RAS-related protein RAP 87.6 0.38 1.3E-05 43.4 3.7 23 351-373 3-25 (167)
393 1ky3_A GTP-binding protein YPT 87.6 0.37 1.3E-05 44.1 3.7 25 350-374 7-31 (182)
394 1ihu_A Arsenical pump-driving 87.5 0.53 1.8E-05 53.2 5.7 39 350-388 326-364 (589)
395 2h17_A ADP-ribosylation factor 87.4 0.33 1.1E-05 45.2 3.3 25 349-373 19-43 (181)
396 3clv_A RAB5 protein, putative; 87.4 0.5 1.7E-05 43.8 4.6 25 350-374 6-30 (208)
397 2fn4_A P23, RAS-related protei 87.4 0.45 1.5E-05 43.5 4.2 25 350-374 8-32 (181)
398 3cmu_A Protein RECA, recombina 87.3 1.9 6.5E-05 55.7 11.0 39 350-388 382-420 (2050)
399 2zej_A Dardarin, leucine-rich 87.2 0.26 8.9E-06 46.2 2.5 22 352-373 3-24 (184)
400 2f9l_A RAB11B, member RAS onco 87.1 0.38 1.3E-05 45.7 3.6 24 351-374 5-28 (199)
401 1a5t_A Delta prime, HOLB; zinc 87.1 0.37 1.3E-05 50.5 3.8 28 350-377 23-50 (334)
402 1z06_A RAS-related protein RAB 87.1 0.4 1.4E-05 44.8 3.7 24 350-373 19-42 (189)
403 3tif_A Uncharacterized ABC tra 87.0 0.28 9.7E-06 49.1 2.7 25 351-375 31-55 (235)
404 3b85_A Phosphate starvation-in 87.0 0.3 1E-05 48.1 2.9 24 351-374 22-45 (208)
405 2pcj_A ABC transporter, lipopr 87.0 0.28 9.7E-06 48.7 2.7 25 351-375 30-54 (224)
406 1wcv_1 SOJ, segregation protei 87.0 0.33 1.1E-05 48.6 3.2 40 351-390 7-46 (257)
407 3jvv_A Twitching mobility prot 86.9 0.39 1.3E-05 51.4 3.9 27 352-378 124-150 (356)
408 1r2q_A RAS-related protein RAB 86.9 0.4 1.4E-05 43.3 3.5 24 350-373 5-28 (170)
409 1byi_A Dethiobiotin synthase; 86.9 0.67 2.3E-05 44.8 5.3 35 352-386 3-37 (224)
410 1z08_A RAS-related protein RAB 86.8 0.44 1.5E-05 43.2 3.7 25 350-374 5-29 (170)
411 1lw7_A Transcriptional regulat 86.8 0.29 1E-05 51.9 2.9 25 352-376 171-195 (365)
412 1ek0_A Protein (GTP-binding pr 86.7 0.42 1.4E-05 43.2 3.5 24 351-374 3-26 (170)
413 3kkq_A RAS-related protein M-R 86.7 0.48 1.7E-05 43.8 4.0 26 349-374 16-41 (183)
414 4ag6_A VIRB4 ATPase, type IV s 86.7 0.51 1.7E-05 50.4 4.7 40 353-392 37-77 (392)
415 1mky_A Probable GTP-binding pr 86.7 0.97 3.3E-05 49.2 7.0 25 350-374 179-203 (439)
416 3nbx_X ATPase RAVA; AAA+ ATPas 86.7 0.22 7.5E-06 55.8 1.9 24 353-376 43-66 (500)
417 3ihw_A Centg3; RAS, centaurin, 86.6 0.52 1.8E-05 44.4 4.2 26 349-374 18-43 (184)
418 1mky_A Probable GTP-binding pr 86.6 0.78 2.7E-05 50.0 6.2 22 353-374 3-24 (439)
419 2gf0_A GTP-binding protein DI- 86.6 0.5 1.7E-05 44.2 4.1 24 350-373 7-30 (199)
420 2a5j_A RAS-related protein RAB 86.5 0.45 1.5E-05 44.7 3.7 25 349-373 19-43 (191)
421 3tvt_A Disks large 1 tumor sup 86.5 2.2 7.7E-05 44.3 9.3 22 352-376 101-122 (292)
422 2cbz_A Multidrug resistance-as 86.4 0.31 1.1E-05 48.9 2.7 25 351-375 31-55 (237)
423 1moz_A ARL1, ADP-ribosylation 86.4 0.36 1.2E-05 44.6 2.9 24 349-372 16-39 (183)
424 2xj4_A MIPZ; replication, cell 86.4 0.49 1.7E-05 48.3 4.2 38 352-389 6-43 (286)
425 1zj6_A ADP-ribosylation factor 86.4 0.49 1.7E-05 44.2 3.9 25 349-373 14-38 (187)
426 2onk_A Molybdate/tungstate ABC 86.3 0.38 1.3E-05 48.5 3.2 24 352-375 25-48 (240)
427 2fna_A Conserved hypothetical 86.3 0.42 1.4E-05 49.0 3.7 24 353-376 32-55 (357)
428 1wms_A RAB-9, RAB9, RAS-relate 86.3 0.46 1.6E-05 43.5 3.6 24 350-373 6-29 (177)
429 3kta_A Chromosome segregation 86.3 0.39 1.3E-05 45.0 3.2 24 353-376 28-51 (182)
430 1e2k_A Thymidine kinase; trans 86.3 0.24 8.4E-06 52.6 1.9 30 350-379 3-32 (331)
431 2g6b_A RAS-related protein RAB 86.3 0.46 1.6E-05 43.6 3.6 25 350-374 9-33 (180)
432 1fzq_A ADP-ribosylation factor 86.2 0.47 1.6E-05 44.4 3.7 24 350-373 15-38 (181)
433 1z0j_A RAB-22, RAS-related pro 86.2 0.46 1.6E-05 43.0 3.5 25 350-374 5-29 (170)
434 1mv5_A LMRA, multidrug resista 86.1 0.39 1.3E-05 48.2 3.3 25 351-375 28-52 (243)
435 3th5_A RAS-related C3 botulinu 86.2 0.14 4.9E-06 48.7 0.0 24 350-373 29-52 (204)
436 1r8s_A ADP-ribosylation factor 86.0 0.43 1.5E-05 43.1 3.2 21 354-374 3-23 (164)
437 1g16_A RAS-related protein SEC 86.0 0.5 1.7E-05 42.7 3.7 23 351-373 3-25 (170)
438 2a5y_B CED-4; apoptosis; HET: 86.0 0.46 1.6E-05 53.3 4.1 24 350-373 151-174 (549)
439 4g1u_C Hemin import ATP-bindin 86.0 0.35 1.2E-05 49.5 2.8 24 351-374 37-60 (266)
440 2efe_B Small GTP-binding prote 85.9 0.51 1.7E-05 43.4 3.7 25 350-374 11-35 (181)
441 3t1o_A Gliding protein MGLA; G 85.9 0.42 1.5E-05 44.4 3.2 26 350-375 13-38 (198)
442 2d2e_A SUFC protein; ABC-ATPas 85.9 0.41 1.4E-05 48.4 3.3 24 351-374 29-52 (250)
443 2y8e_A RAB-protein 6, GH09086P 85.8 0.45 1.6E-05 43.4 3.3 24 350-373 13-36 (179)
444 3tw8_B RAS-related protein RAB 85.8 0.49 1.7E-05 43.3 3.5 24 350-373 8-31 (181)
445 1mh1_A RAC1; GTP-binding, GTPa 85.8 0.44 1.5E-05 43.9 3.2 24 350-373 4-27 (186)
446 2a9k_A RAS-related protein RAL 85.7 0.5 1.7E-05 43.4 3.6 24 350-373 17-40 (187)
447 1pzn_A RAD51, DNA repair and r 85.7 0.45 1.5E-05 50.5 3.6 26 350-375 130-155 (349)
448 3j2k_7 ERF3, eukaryotic polype 85.6 2.7 9.3E-05 45.9 9.9 25 350-374 16-40 (439)
449 3lxx_A GTPase IMAP family memb 85.6 0.48 1.7E-05 46.7 3.6 26 349-374 27-52 (239)
450 3t5g_A GTP-binding protein RHE 85.5 0.44 1.5E-05 44.0 3.1 24 350-373 5-28 (181)
451 2cxx_A Probable GTP-binding pr 85.5 0.42 1.4E-05 44.3 2.9 21 353-373 3-23 (190)
452 2il1_A RAB12; G-protein, GDP, 85.5 0.51 1.8E-05 44.5 3.6 24 350-373 25-48 (192)
453 2ff7_A Alpha-hemolysin translo 85.5 0.37 1.3E-05 48.6 2.7 25 351-375 35-59 (247)
454 2oil_A CATX-8, RAS-related pro 85.4 0.58 2E-05 43.8 3.9 26 349-374 23-48 (193)
455 3cmw_A Protein RECA, recombina 85.3 2.4 8.3E-05 54.0 10.4 39 350-388 382-420 (1706)
456 3cbq_A GTP-binding protein REM 85.3 0.42 1.4E-05 45.6 2.9 23 350-372 22-44 (195)
457 1b0u_A Histidine permease; ABC 85.3 0.38 1.3E-05 49.0 2.7 25 351-375 32-56 (262)
458 1qvr_A CLPB protein; coiled co 85.2 0.44 1.5E-05 56.5 3.6 39 352-390 589-627 (854)
459 2bme_A RAB4A, RAS-related prot 85.2 0.55 1.9E-05 43.4 3.6 25 350-374 9-33 (186)
460 1zd9_A ADP-ribosylation factor 85.2 0.59 2E-05 43.8 3.8 25 349-373 20-44 (188)
461 1z6t_A APAF-1, apoptotic prote 85.1 0.74 2.5E-05 51.5 5.2 25 350-374 146-170 (591)
462 1ksh_A ARF-like protein 2; sma 85.1 0.54 1.8E-05 43.7 3.5 24 350-373 17-40 (186)
463 1ypw_A Transitional endoplasmi 85.1 0.27 9.3E-06 58.1 1.7 28 350-377 510-537 (806)
464 2qen_A Walker-type ATPase; unk 85.1 0.51 1.7E-05 48.3 3.6 25 352-376 32-56 (350)
465 3nh6_A ATP-binding cassette SU 85.1 0.15 5.1E-06 53.5 -0.5 25 351-375 80-104 (306)
466 1ji0_A ABC transporter; ATP bi 85.1 0.4 1.4E-05 48.1 2.7 24 351-374 32-55 (240)
467 3gfo_A Cobalt import ATP-bindi 85.0 0.4 1.4E-05 49.4 2.7 24 352-375 35-58 (275)
468 2zu0_C Probable ATP-dependent 85.0 0.47 1.6E-05 48.4 3.2 24 351-374 46-69 (267)
469 3pqc_A Probable GTP-binding pr 84.9 0.62 2.1E-05 43.2 3.8 24 351-374 23-46 (195)
470 1g6h_A High-affinity branched- 84.9 0.41 1.4E-05 48.5 2.7 25 351-375 33-57 (257)
471 3tkl_A RAS-related protein RAB 84.9 0.68 2.3E-05 43.2 4.1 24 350-373 15-38 (196)
472 1r6b_X CLPA protein; AAA+, N-t 84.8 0.55 1.9E-05 54.7 4.1 28 351-378 207-234 (758)
473 2pze_A Cystic fibrosis transme 84.8 0.42 1.4E-05 47.6 2.7 25 351-375 34-58 (229)
474 2fh5_B SR-beta, signal recogni 84.7 0.49 1.7E-05 45.2 3.1 25 350-374 6-30 (214)
475 1f6b_A SAR1; gtpases, N-termin 84.7 0.56 1.9E-05 44.7 3.5 24 350-373 24-47 (198)
476 1vg8_A RAS-related protein RAB 84.7 0.62 2.1E-05 43.9 3.7 25 350-374 7-31 (207)
477 1x3s_A RAS-related protein RAB 84.6 0.59 2E-05 43.5 3.5 25 350-374 14-38 (195)
478 2ghi_A Transport protein; mult 84.6 0.42 1.5E-05 48.6 2.7 25 351-375 46-70 (260)
479 2ixe_A Antigen peptide transpo 84.6 0.42 1.4E-05 49.0 2.7 24 351-374 45-68 (271)
480 2bov_A RAla, RAS-related prote 84.6 0.69 2.4E-05 43.5 4.0 25 350-374 13-37 (206)
481 2i1q_A DNA repair and recombin 84.6 0.54 1.9E-05 48.7 3.6 25 350-374 97-121 (322)
482 1zbd_A Rabphilin-3A; G protein 84.6 0.5 1.7E-05 44.7 3.0 23 351-373 8-30 (203)
483 2olj_A Amino acid ABC transpor 84.6 0.43 1.5E-05 48.8 2.7 24 351-374 50-73 (263)
484 3lxw_A GTPase IMAP family memb 84.5 0.57 2E-05 46.9 3.6 24 350-373 20-43 (247)
485 3ice_A Transcription terminati 84.5 2.5 8.5E-05 46.2 8.7 32 353-384 176-207 (422)
486 2gf9_A RAS-related protein RAB 84.3 0.76 2.6E-05 42.9 4.2 25 350-374 21-45 (189)
487 3dz8_A RAS-related protein RAB 84.3 0.58 2E-05 43.9 3.3 25 350-374 22-46 (191)
488 1m2o_B GTP-binding protein SAR 84.3 0.53 1.8E-05 44.5 3.0 24 350-373 22-45 (190)
489 3bwd_D RAC-like GTP-binding pr 84.2 0.57 2E-05 43.0 3.2 24 350-373 7-30 (182)
490 4bas_A ADP-ribosylation factor 84.2 0.61 2.1E-05 43.6 3.4 24 350-373 16-39 (199)
491 3c5c_A RAS-like protein 12; GD 84.1 0.68 2.3E-05 43.5 3.7 25 350-374 20-44 (187)
492 1sgw_A Putative ABC transporte 84.1 0.4 1.4E-05 47.5 2.2 24 352-375 36-59 (214)
493 2yz2_A Putative ABC transporte 84.0 0.47 1.6E-05 48.4 2.7 25 351-375 33-57 (266)
494 2h57_A ADP-ribosylation factor 84.0 0.51 1.8E-05 44.2 2.8 25 350-374 20-44 (190)
495 2atv_A RERG, RAS-like estrogen 84.0 0.71 2.4E-05 43.5 3.8 25 350-374 27-51 (196)
496 1p9r_A General secretion pathw 84.0 0.88 3E-05 49.7 5.0 29 350-378 166-194 (418)
497 2c78_A Elongation factor TU-A; 84.0 2.9 9.8E-05 44.9 9.0 29 350-378 10-38 (405)
498 3oes_A GTPase rhebl1; small GT 83.9 0.68 2.3E-05 43.9 3.7 25 350-374 23-47 (201)
499 1vpl_A ABC transporter, ATP-bi 83.8 0.49 1.7E-05 48.2 2.7 25 351-375 41-65 (256)
500 3e2i_A Thymidine kinase; Zn-bi 83.8 1.1 3.9E-05 44.8 5.3 38 349-386 26-63 (219)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=4.2e-61 Score=542.89 Aligned_cols=330 Identities=46% Similarity=0.842 Sum_probs=309.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
..|.+|+|+|+|||||||+|++|+++|+|.++++++|+.|++|+.+.+.....+||...+++.++.+++++..+++++..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~ 112 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS 112 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999887765567889889999999999999999999999
Q ss_pred HHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 429 WMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 429 ~L~-~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
+|. ..|.+||+|+||..++.|+.++++ .+.++.++||++.|++++++++|+.+|+..+|+|++. ++++++++|.+|+
T Consensus 113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~-d~e~~~~~~~~Ri 191 (520)
T 2axn_A 113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDC-NSAEAMDDFMKRI 191 (520)
T ss_dssp HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTS-CHHHHHHHHHHHH
T ss_pred HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccC-CHHHHHHHHHHHH
Confidence 985 579999999999999999999988 6678899999999999999999998887778999998 8999999999999
Q ss_pred HhhhhccccCCCC------CceEEeecccCCcceeEEeccccCCCccccccccccCCCCccEEEeccCCcccccCCCcCC
Q 005630 507 ANYEKVYEPVDEG------SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGG 580 (687)
Q Consensus 507 ~~y~~~yEPl~e~------~yik~in~~~~~g~~i~~~~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~n~~~~~~g 580 (687)
+.|++.|||++++ +|||+||+ |+++++|++.|||+++|||||||+|+++++|||||||++++|..++++|
T Consensus 192 ~~y~~~Yepi~~ee~~~dl~yik~id~----g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~g 267 (520)
T 2axn_A 192 SCYEASYQPLDPDKCDRDLSLIKVIDV----GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGG 267 (520)
T ss_dssp HHHHTTCCCCCTTTTTTTSEEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCSS
T ss_pred HhhhhhhcccChhhcccCcceEEEEcC----ccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccCC
Confidence 9999999999832 89999999 9999999999999999999999999999999999999999999899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcccCCCcccccccccccccccCCCCHHHHHHhCHHH
Q 005630 581 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE 660 (687)
Q Consensus 581 D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e 660 (687)
|+|||+.|++||++++++|.+. ...++.|||||+.||+|||+++ +.++..++.|+|+++|.|+|+++++++++||++
T Consensus 268 D~pLt~~G~~qA~~l~~~L~~~--~~~~~~v~sSpl~Ra~qTA~~i-~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~ 344 (520)
T 2axn_A 268 DSGLSSRGKKFASALSKFVEEQ--NLKDLRVWTSQLKSTIQTAEAL-RLPYEQWKALNEIDAGVCEELTYEEIRDTYPEE 344 (520)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHH--CCSCCEEEECSSHHHHHHHHTT-TSCEEECGGGSCCCCGGGTTCBHHHHHHHCHHH
T ss_pred CcccCHHHHHHHHHHHHHHHhc--CCCCCeEEeCCcHHHHHHHHHh-CCCcEEccccccccCCcccCCcHHHHHHHCHHH
Confidence 9999999999999999999876 5667999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 661 YEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 661 ~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+..|..+++++++|+|||+.|+.+|+
T Consensus 345 ~~~~~~d~~~~~~p~gEs~~~~~~Rv 370 (520)
T 2axn_A 345 YALREQDKYYYRYPTGESYQDLVQRL 370 (520)
T ss_dssp HHHHHHCTTTCCCTTSCCHHHHHHHH
T ss_pred HHHHhcCcccCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999997
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=4.1e-59 Score=519.81 Aligned_cols=331 Identities=45% Similarity=0.799 Sum_probs=305.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
..+|++|+|+|+|||||||+|++|+++|+|.+++++.++.|++|+...+......+|+..++..++.++..+..++.++.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999877665455678888899888888888888888888
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHH
Q 005630 428 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (687)
Q Consensus 428 ~~L~-~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~R 505 (687)
.++. .+|.++|+|++|.++++|+.+++. .+.++.++|+++.|++++++.+|+.+++..+|++++. +++++.++|.+|
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~-~~e~~~~~~~~R 194 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNR-DSDEATEDFMRR 194 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTS-CHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCC-CHHHHHHHHHHH
Confidence 8885 468899999999999999999887 6668889999999999999999998877668999988 899999999999
Q ss_pred HHhhhhccccCCCC-----CceEEeecccCCcceeEEeccccCCCccccccccccCCCCccEEEeccCCcccccCCCcCC
Q 005630 506 LANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGG 580 (687)
Q Consensus 506 i~~y~~~yEPl~e~-----~yik~in~~~~~g~~i~~~~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~n~~~~~~g 580 (687)
+..|++.|||++++ +|||+||+ |+++++|++.|||+++|||||||+|.++++|||||||++.+|..++++|
T Consensus 195 ~~~y~~~ye~l~~~~~~~~~~ik~~d~----~~~~~~~~~~g~~~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~g 270 (469)
T 1bif_A 195 IECYENSYESLDEEQDRDLSYIKIMDV----GQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGG 270 (469)
T ss_dssp HHHHHTTCCCCCTTTTTTSCEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCCCCCEEEEECSCBHHHHHTBCSS
T ss_pred HHHhccEeEECCccccCCcceEEEEcC----ccceeccCccccchhhHHHHHhccCCCCceEEEeccceeccccCCeeCC
Confidence 99999999999852 99999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcccCCCcccccccccccccccCCCCHHHHHHhCHHH
Q 005630 581 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE 660 (687)
Q Consensus 581 D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e 660 (687)
|.|||+.|++||++++++|.+. +..++.|||||+.||+|||+.+ ++++..++.|+|+++|.|+|++.+++.+.||++
T Consensus 271 D~~Lt~~G~~qA~~l~~~l~~~--~~~~~~v~sSpl~Ra~qTA~~l-~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~p~~ 347 (469)
T 1bif_A 271 DPGLSPRGREFSKHLAQFISDQ--NIKDLKVFTSQMKRTIQTAEAL-SVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLE 347 (469)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHH--TCTTCEEEECSSHHHHHHHTTS-SSCCEECGGGSCCCCGGGTTCBHHHHHHHCHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHh-CCCceECcccccccCCccCCCCHHHHHHHCHHH
Confidence 9999999999999999999876 5678999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 661 YEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 661 ~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+..|..+++.+++|+|||+.|+.+|+
T Consensus 348 ~~~~~~~~~~~~~p~gEs~~~~~~R~ 373 (469)
T 1bif_A 348 FALRDQDKYRYRYPKGESYEDLVQRL 373 (469)
T ss_dssp HHHHHHCTTTCCCTTCCCHHHHHHHH
T ss_pred HHHHhcCccccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999997
No 3
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=99.92 E-value=1.6e-25 Score=223.25 Aligned_cols=131 Identities=30% Similarity=0.358 Sum_probs=118.8
Q ss_pred cccCCCCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c
Q 005630 553 VNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A 627 (687)
Q Consensus 553 mN~~~~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~ 627 (687)
||.+.++++|||||||++.+|..++++| |.|||+.|++||++++++|... +.+++.|||||+.||+|||+++ .
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSR--GYKFDIAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 7888889999999999999998888877 9999999999999999999765 5689999999999999999999 3
Q ss_pred C---CCcccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 628 G---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 628 g---~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+ .++..++.|+|+++|.|+|++.+++.+.||+. +..|..++ .+++|+|||+.++..|+
T Consensus 79 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~ 140 (211)
T 1fzt_A 79 GEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERV 140 (211)
T ss_dssp TCTTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHH
T ss_pred CCCCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHH
Confidence 3 67888999999999999999999999999875 77787665 78999999999999997
No 4
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=99.91 E-value=8.1e-25 Score=217.90 Aligned_cols=123 Identities=35% Similarity=0.449 Sum_probs=114.7
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCcccc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v~~~ 634 (687)
|+|||||||++.+|..++++| |.|||+.|++||++++++|. ..+++.|||||+.||+|||+++ .++++..+
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 77 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE----AVELAAIYTSTSGRALETAEIVRGGRLIPIYQD 77 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTT----TSCCSEEEECSSHHHHHHHHHHHTTCSCCEEEC
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHc----CCCCCEEEECccHHHHHHHHHHHhcCCCCeEEC
Confidence 589999999999999888888 99999999999999997764 4689999999999999999999 46788889
Q ss_pred cccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 635 ~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+.|+|+++|.|+|++.+++.+.||+.+..|..++..+.+|+|||+.++.+|+
T Consensus 78 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 129 (207)
T 1h2e_A 78 ERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRA 129 (207)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHH
T ss_pred cccccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999996
No 5
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.7e-24 Score=216.14 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=108.9
Q ss_pred ccccCCCCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcccCC
Q 005630 552 LVNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF 629 (687)
Q Consensus 552 LmN~~~~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~g~ 629 (687)
|||++..+++|||||||++.+|..++++| |.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~~-~~ 79 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGEL--ELDDPIVICSPRRRTLDTAKLA-GL 79 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTT--CCSSCEEEECSSHHHHHHHHHT-TC
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcC--CCCCCEEEECCcHHHHHHHHHh-CC
Confidence 57777667899999999999999888877 9999999999999999988643 3445999999999999999985 78
Q ss_pred Cc-ccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 630 PK-IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 630 ~v-~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++ ..++.|+|+++|.|+|++.+++.+.+|+ +..|..++ |+|||+.++..|+
T Consensus 80 ~~~~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~ 131 (208)
T 2a6p_A 80 TVNEVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRA 131 (208)
T ss_dssp CCSEECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHH
T ss_pred CceeeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHH
Confidence 88 8899999999999999999999999999 88888764 8999999999997
No 6
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=99.89 E-value=1.4e-23 Score=215.04 Aligned_cols=131 Identities=28% Similarity=0.403 Sum_probs=112.6
Q ss_pred ccCCCCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC
Q 005630 554 NTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG 628 (687)
Q Consensus 554 N~~~~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g 628 (687)
+-++.+++|||||||++.+|..++++| |+|||+.|++||+.++++|.+. +..++.|||||+.||+|||+++ .+
T Consensus 6 ~~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~ 83 (258)
T 3kkk_A 6 HHHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEK--NFKFDVVYTSVLKRAICTAWNVLKTAD 83 (258)
T ss_dssp ----CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECchHHHHHHHHHHHHhcC
Confidence 446678999999999999999999888 9999999999999999999764 5789999999999999999999 33
Q ss_pred ---CCcccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCC------------------------CCCCCCCCCCHH
Q 005630 629 ---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYL 680 (687)
Q Consensus 629 ---~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~------------------------~~~r~PgGES~~ 680 (687)
+++..++.|+|+++|.|+|++.+++.+.||+. +..|..+. ..+++|+|||+.
T Consensus 84 ~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~ 163 (258)
T 3kkk_A 84 LLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLK 163 (258)
T ss_dssp CTTSCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHH
T ss_pred CCCCCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHH
Confidence 68889999999999999999999999999976 66675431 123579999999
Q ss_pred HHHHhh
Q 005630 681 DVIQRQ 686 (687)
Q Consensus 681 dl~~Rv 686 (687)
++..|+
T Consensus 164 ~~~~Rv 169 (258)
T 3kkk_A 164 DTVERV 169 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 7
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=99.89 E-value=1.5e-23 Score=213.78 Aligned_cols=126 Identities=26% Similarity=0.303 Sum_probs=110.4
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~ 630 (687)
|++|||||||++.+|..++++| |.|||+.|++||+.++++|.+. +.+++.|||||+.||+|||+++ .+ ++
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEE--GYSFDFAYTSVLKRAIHTLWNVLDELDQAWLP 79 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999888888 9999999999999999998754 5689999999999999999998 33 67
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCC------------------------CCCCCCCCCCHHHHHHh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~------------------------~~~r~PgGES~~dl~~R 685 (687)
+..++.|+|+++|.|+|++.+++.+.||+. +..|..+. ..+++|+|||+.|+.+|
T Consensus 80 ~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 159 (249)
T 1e58_A 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR 159 (249)
T ss_dssp EEECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHH
T ss_pred eeeCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999875 66776432 12467999999999999
Q ss_pred h
Q 005630 686 Q 686 (687)
Q Consensus 686 v 686 (687)
+
T Consensus 160 v 160 (249)
T 1e58_A 160 V 160 (249)
T ss_dssp H
T ss_pred H
Confidence 7
No 8
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=99.89 E-value=4.4e-23 Score=213.40 Aligned_cols=126 Identities=26% Similarity=0.364 Sum_probs=110.4
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~ 630 (687)
|++|||||||++.+|..++++| |.|||+.|++||++++++|.+. +.+++.|||||+.||+|||+++ .+ ++
T Consensus 20 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (267)
T 3d8h_A 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEK--GFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97 (267)
T ss_dssp CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999988888 9999999999999999998754 5689999999999999999998 23 67
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCC------------------------CCCCCCCCCCHHHHHHh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~------------------------~~~r~PgGES~~dl~~R 685 (687)
+..++.|+|+++|.|+|++.+++.+.||+. +..|..+. ..+++|+|||+.|+.+|
T Consensus 98 i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 177 (267)
T 3d8h_A 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177 (267)
T ss_dssp EEECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHH
T ss_pred eeECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999875 66775431 01357999999999999
Q ss_pred h
Q 005630 686 Q 686 (687)
Q Consensus 686 v 686 (687)
+
T Consensus 178 v 178 (267)
T 3d8h_A 178 V 178 (267)
T ss_dssp H
T ss_pred H
Confidence 7
No 9
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=99.89 E-value=5.2e-23 Score=212.12 Aligned_cols=127 Identities=27% Similarity=0.301 Sum_probs=109.9
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---C
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~ 629 (687)
+|++|||||||++.+|..++++| |.|||+.|++||+.+++.|.+. +.+++.|||||+.||+|||+++ .+ +
T Consensus 2 ~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 79 (262)
T 1yfk_A 2 AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDA--GYEFDICFTSVQKRAIRTLWTVLDAIDQMWL 79 (262)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCC
Confidence 35789999999999999999888 9999999999999999998765 5689999999999999999998 33 6
Q ss_pred CcccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCC---------------------C-----CCCCCCCCCHHHH
Q 005630 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK---------------------L-----RYRYPRGESYLDV 682 (687)
Q Consensus 630 ~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~---------------------~-----~~r~PgGES~~dl 682 (687)
++..++.|+|+++|.|+|++.+++.+.||+. +..|..+. . ...+|+|||+.++
T Consensus 80 ~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~~ 159 (262)
T 1yfk_A 80 PVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDT 159 (262)
T ss_dssp CEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHHH
T ss_pred CeeeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHHH
Confidence 7888999999999999999999999999865 56665431 0 1256899999999
Q ss_pred HHhh
Q 005630 683 IQRQ 686 (687)
Q Consensus 683 ~~Rv 686 (687)
..|+
T Consensus 160 ~~Rv 163 (262)
T 1yfk_A 160 IARA 163 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9997
No 10
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=99.89 E-value=2.7e-23 Score=212.94 Aligned_cols=129 Identities=25% Similarity=0.317 Sum_probs=112.1
Q ss_pred CCCCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC--
Q 005630 556 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG-- 628 (687)
Q Consensus 556 ~~~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g-- 628 (687)
|..+-+.||||||||+||..++++| |+|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ .+
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 83 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEA--GYTFDIAYTSVLKRAIRTLWHVQDQMDLM 83 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCT
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEeCChHHHHHHHHHHHHhcCCC
Confidence 4456789999999999999999988 9999999999999999999764 5689999999999999999999 34
Q ss_pred -CCcccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------------CCCCCCCCCHHHH
Q 005630 629 -FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDV 682 (687)
Q Consensus 629 -~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------------~~r~PgGES~~dl 682 (687)
+++..++.|+|+++|.|+|++.+++.+.||+. +..|..+.. .+++|+|||+.++
T Consensus 84 ~~~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~ 163 (257)
T 3gp3_A 84 YVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDT 163 (257)
T ss_dssp TSCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHH
T ss_pred CCceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHH
Confidence 78889999999999999999999999999976 677765321 2357899999999
Q ss_pred HHhh
Q 005630 683 IQRQ 686 (687)
Q Consensus 683 ~~Rv 686 (687)
..|+
T Consensus 164 ~~Rv 167 (257)
T 3gp3_A 164 VARV 167 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9997
No 11
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=99.88 E-value=1.7e-23 Score=209.57 Aligned_cols=122 Identities=23% Similarity=0.237 Sum_probs=108.4
Q ss_pred CCCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCc
Q 005630 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (687)
Q Consensus 557 ~~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v 631 (687)
+++++|||||||++.+|. .++| |.|||+.|++||+++++.| ..+++.|||||+.||+|||+++ .++++
T Consensus 3 m~~~~i~lvRHGet~~n~--~~~g~~D~pLt~~G~~QA~~~~~~l-----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 75 (213)
T 3hjg_A 3 LKTLNIYLMRHGKVDAAP--GLHGQTDLKVKEAEQQQIAMAWKTK-----GYDVAGIISSPLSRCHDLAQILAEQQLLPM 75 (213)
T ss_dssp -CEEEEEEEECCCCSSCS--BCCSSSCCCCCHHHHHHHHHHHHHT-----TCCCSCEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred CceeEEEEECCCCcCCCC--cccCCCCCCCCHHHHHHHHHHHHhc-----CCCCCEEEECChHHHHHHHHHHHhccCCCc
Confidence 456899999999999983 5555 9999999999999998665 3689999999999999999999 57899
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
..++.|+|+++|.|+|++.+++.+.+|. +..|+.++..+++|+|||+.++.+|+
T Consensus 76 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~-~~~~~~~~~~~~~p~gEs~~~~~~R~ 129 (213)
T 3hjg_A 76 TTEDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLPNAESLSTFSQRV 129 (213)
T ss_dssp EECGGGSCCCCTTSTTCBTTHHHHSCCC-THHHHHCGGGCCCTTCCCHHHHHHHH
T ss_pred EEccccEeCcCCccCCcCHHHHHHhhHH-HHHHHhCcccCCCCCCCCHHHHHHHH
Confidence 9999999999999999999999998764 55666788889999999999999997
No 12
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=99.88 E-value=3.5e-23 Score=214.02 Aligned_cols=127 Identities=29% Similarity=0.365 Sum_probs=110.2
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---C
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~ 629 (687)
++++|||||||++.+|..++++| |.|||+.|++||+.+++.|... +.+++.|||||+.||+|||+++ .+ +
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 79 (267)
T 2hhj_A 2 SKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKAL--NFEFDLVFTSVLNRSIHTAWLILEELGQEWV 79 (267)
T ss_dssp CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTS
T ss_pred CceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCC
Confidence 45799999999999999888888 9999999999999999998754 5689999999999999999999 23 6
Q ss_pred CcccccccccccccccCCCCHHHHHHhCHHH-HHHHHcC--------------------CCCC--------CCCCCCCHH
Q 005630 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD--------------------KLRY--------RYPRGESYL 680 (687)
Q Consensus 630 ~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d--------------------~~~~--------r~PgGES~~ 680 (687)
++..++.|+|+++|.|+|++.+++.+.||++ +..|..+ ...+ .+|+|||+.
T Consensus 80 ~v~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~gEs~~ 159 (267)
T 2hhj_A 80 PVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLK 159 (267)
T ss_dssp CEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTSSSSCGGGSCSSCCHH
T ss_pred CeeEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccccccccccccCCCCCCCCHH
Confidence 7888999999999999999999999999876 6667421 1122 268999999
Q ss_pred HHHHhh
Q 005630 681 DVIQRQ 686 (687)
Q Consensus 681 dl~~Rv 686 (687)
++.+|+
T Consensus 160 ~~~~Rv 165 (267)
T 2hhj_A 160 DVLERL 165 (267)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 13
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=99.88 E-value=8.8e-23 Score=211.58 Aligned_cols=127 Identities=24% Similarity=0.232 Sum_probs=111.7
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---C
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~ 629 (687)
++++|||||||++.+|..++++| |+|||+.|++||+.+++.|++. ..+++.|||||+.||+|||+.+ .+ +
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~ 103 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQE--GYSFDIAFSSLLSRANDTLNIILRELGQSYI 103 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTS
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCC
Confidence 35889999999999999999888 9999999999999999998764 5789999999999999999999 33 6
Q ss_pred CcccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------------CCCCCCCCCHHHHHH
Q 005630 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQ 684 (687)
Q Consensus 630 ~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------------~~r~PgGES~~dl~~ 684 (687)
++..++.|+|+++|.|+|++.+++.+.||+. +..|..+.. .+++|+|||+.++.+
T Consensus 104 ~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 183 (274)
T 4emb_A 104 SVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVA 183 (274)
T ss_dssp EEEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 7888999999999999999999999999975 666764311 236799999999999
Q ss_pred hh
Q 005630 685 RQ 686 (687)
Q Consensus 685 Rv 686 (687)
|+
T Consensus 184 Rv 185 (274)
T 4emb_A 184 RV 185 (274)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 14
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.88 E-value=8.5e-23 Score=207.19 Aligned_cols=125 Identities=28% Similarity=0.335 Sum_probs=108.7
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CCc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~v 631 (687)
|+|||||||++.+|..++++| |.|||+.|++||+.+++.|++. +.+++.|||||+.||+|||+++ .+ +++
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEK--KVYPDVLYTSKLSRAIQTANIALEKADRLWIPV 78 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999888888 9999999999999999998764 5689999999999999999998 22 678
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------------CCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------------~~r~PgGES~~dl~~Rv 686 (687)
..++.|+|+++|.|+|++.+++.+.||+. +..|..+.. ..++|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 158 (240)
T 1qhf_A 79 NRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRL 158 (240)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHH
T ss_pred eeCcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHH
Confidence 88999999999999999999999999965 566754310 13468999999999997
No 15
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.88 E-value=1.1e-22 Score=210.32 Aligned_cols=126 Identities=29% Similarity=0.333 Sum_probs=111.2
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~ 630 (687)
+++|||||||++.+|..++++| |+|||+.|++||+.++++|.+. ..+++.|||||+.||+|||+++ .+ ++
T Consensus 27 ~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 104 (268)
T 4eo9_A 27 TATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEH--NLLPDVLYTSLLRRAITTAHLALDTADWLWIP 104 (268)
T ss_dssp CEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999888 9999999999999999998754 5789999999999999999998 33 78
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCCCC----------------------CCCCCCCHHHHHHhh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQRQ 686 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~~~----------------------r~PgGES~~dl~~Rv 686 (687)
+..++.|+|+++|.|+|++.+++.+.||+. +..|..+.... ++|+|||+.++..|+
T Consensus 105 ~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv 183 (268)
T 4eo9_A 105 VRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRF 183 (268)
T ss_dssp EEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHH
T ss_pred eEECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHH
Confidence 889999999999999999999999999975 77777653221 358999999999997
No 16
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.87 E-value=1e-22 Score=210.98 Aligned_cols=126 Identities=30% Similarity=0.374 Sum_probs=109.3
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC---CC
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g---~~ 630 (687)
+++|||||||++.||..++++| |.|||+.|++||+.+++.|.+. +..++.|||||++||+|||+++ .+ ++
T Consensus 4 m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 81 (265)
T 1rii_A 4 TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEH--DLLPDVLYTSLLRRAITTAHLALDSADRLWIP 81 (265)
T ss_dssp CCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHHcCCCCCC
Confidence 5789999999999999988888 9999999999999999998754 5689999999999999999998 33 67
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHH-HHHHHcCCC------------------CCC----CCCCCCHHHHHHhh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RYR----YPRGESYLDVIQRQ 686 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-~~~~~~d~~------------------~~r----~PgGES~~dl~~Rv 686 (687)
+..++.|+|+++|.|+|++.+++.++||++ +..|..+.. .|. .|+|||+.|+.+|+
T Consensus 82 v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv 160 (265)
T 1rii_A 82 VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARF 160 (265)
T ss_dssp EEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHH
T ss_pred eeECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHH
Confidence 888999999999999999999999999875 567764310 111 18999999999996
No 17
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.8e-22 Score=203.68 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=105.3
Q ss_pred ccCCCCccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCC
Q 005630 554 NTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 630 (687)
Q Consensus 554 N~~~~~~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~ 630 (687)
|++.++|+|||||||++.+|..+++ .|.|||+.|++||+++++.|+.. +++.|||||+.||+|||+++ .+++
T Consensus 16 ~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~----~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 90 (219)
T 2qni_A 16 NLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAK----ALRRIVSSAETKAIETAHMLAETSGAA 90 (219)
T ss_dssp -----CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHH----TCCEEEECSSHHHHHHHHHHTTTTCCE
T ss_pred hhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcC----CCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 3444568999999999999987776 59999999999999999888653 78999999999999999999 4678
Q ss_pred cccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 631 v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+..++.|+|+++|.|+|++.+++. +.+..|..++. +.+|+|||+.++.+|+
T Consensus 91 ~~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~~-~~~p~gEs~~~~~~Rv 141 (219)
T 2qni_A 91 IEIIEAMHENDRSATGFLPPPEFE----KAADWFFAHPE-ESFQGWERAIDAQARI 141 (219)
T ss_dssp EEECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCTT-SCSTTCCCHHHHHHHH
T ss_pred EEECcccccCCCccccCccHHHHH----HHHHHHHhCcc-cCCCCCCCHHHHHHHH
Confidence 889999999999999999988764 56778887764 7889999999999997
No 18
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=209.37 Aligned_cols=124 Identities=26% Similarity=0.282 Sum_probs=110.8
Q ss_pred cCCCCccEEEeccCCcccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c-
Q 005630 555 THLTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A- 627 (687)
Q Consensus 555 ~~~~~~~I~LVRHGeS~~n~~~~~~g---D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~- 627 (687)
+++..++|||||||++.+|..++++| |+|||+.|++||+.++++|. ...++.|||||+.||+|||+.+ .
T Consensus 4 ~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~----~~~~~~v~sSpl~Ra~qTA~~i~~~~~ 79 (275)
T 3dcy_A 4 FQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN----NVKFTHAFSSDLMRTKQTMHGILERSK 79 (275)
T ss_dssp ECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHTTCS
T ss_pred ccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhc----cCCCCEEEECChHHHHHHHHHHHHhcc
Confidence 45567899999999999998888776 99999999999999998764 5689999999999999999999 2
Q ss_pred ---CCCcccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 628 ---GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 628 ---g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++++..++.|+|+++|.|+|++.+++.+.+| .|..++..+++|+|||+.|+..|+
T Consensus 80 ~~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~ 137 (275)
T 3dcy_A 80 FCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK----AAREECPVFTPPGGETLDQVKMRG 137 (275)
T ss_dssp SCTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHH----HTTCCTTTCCCTTBCCHHHHHHHH
T ss_pred ccCCCCeeECcccccCccCCcCCCCHHHHHHHHH----HHhhcCCCCCCCCCCCHHHHHHHH
Confidence 5688999999999999999999999988765 466677789999999999999997
No 19
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.86 E-value=1e-22 Score=198.41 Aligned_cols=115 Identities=30% Similarity=0.389 Sum_probs=103.8
Q ss_pred ccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcccCCCccccccc
Q 005630 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRAL 637 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i~g~~v~~~~~L 637 (687)
|+|||||||++.+|..++++| |.|||+.|++||+.++++|. ..+ |||||+.||+|||+++ ++++..++.|
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~----~~~---i~sSpl~Ra~qTA~~l-~~~~~~~~~L 72 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP----SLP---AFSSDLLRARRTAELA-GFSPRLYPEL 72 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSC----SCC---EEECSSHHHHHHHHHT-TCCCEECGGG
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhc----CCC---EEECCcHHHHHHHHHh-CCCcEECccc
Confidence 579999999999998888877 99999999999999997663 222 9999999999999995 7888889999
Q ss_pred ccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 638 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 638 ~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
+|+++|.|+|++.+++.+.||+.+..| ..+.+|+|||+.++..|+
T Consensus 73 ~E~~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~ 117 (177)
T 1v37_A 73 REIHFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERV 117 (177)
T ss_dssp SCCCCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHH
T ss_pred eeCCCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHH
Confidence 999999999999999999999988887 467889999999999997
No 20
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.86 E-value=3e-22 Score=206.81 Aligned_cols=121 Identities=30% Similarity=0.342 Sum_probs=75.3
Q ss_pred CCccEEEeccCCcccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c----
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A---- 627 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g---D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~---- 627 (687)
+.++|||||||++.+|..++++| |+|||+.|++||+.++++|. ...++.|||||+.||+|||+++ .
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 77 (265)
T 3e9c_A 2 LTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK----DLHFTNVFVSNLQRAIQTAEIILGNNLHSS 77 (265)
T ss_dssp EEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHHTCSSCT
T ss_pred cccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhccccC
Confidence 45789999999999999888876 99999999999999998764 5689999999999999999998 2
Q ss_pred CCCcccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 628 GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 628 g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++++..++.|+|+++|.|+|++.+++.+.++ .|..++..+++|+|||+.++..|+
T Consensus 78 ~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~ 132 (265)
T 3e9c_A 78 ATEMILDPLLRERGFGVAEGRPKEHLKNMAN----AAGQSCRDYTPPGGETLEQVKTRF 132 (265)
T ss_dssp TCCEEECGGGSCCCCC---------------------------------CCHHHHHHHH
T ss_pred CCCeEECccceeCcCCCCCCCCHHHHHHHHH----HhccCCccCCCCCCCCHHHHHHHH
Confidence 6788999999999999999999999988764 455566788999999999999997
No 21
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.85 E-value=3.2e-22 Score=206.44 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=106.7
Q ss_pred CCCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHH---hccCCCCEEEecCcHHHHHhhhccc----
Q 005630 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKR---LKSERAASIWTSTLQRTILTASPIA---- 627 (687)
Q Consensus 557 ~~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~---l~~~~~~~V~tSpl~Ra~qTA~~i~---- 627 (687)
+++++|||||||++.+|..++++| |.|||+.|++||++++++|... +...+++.|||||+.||+|||+++.
T Consensus 3 ~~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~ 82 (265)
T 3f3k_A 3 SLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLS 82 (265)
T ss_dssp CCCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTSC
T ss_pred CCCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhcc
Confidence 356889999999999999988887 9999999999999999998652 1124789999999999999999992
Q ss_pred -----CCCcccccccccccccccCCCCHHHHHHhCHHH-------HHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 628 -----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-------YEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 628 -----g~~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e-------~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++++..++.|+|+++|.|+|++.+++++.||+. +..|. ..+|+|||+.++..|+
T Consensus 83 ~~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~-----~~~p~gEs~~~~~~R~ 148 (265)
T 3f3k_A 83 DEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWR-----DGCENGETTQQIGLRL 148 (265)
T ss_dssp HHHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHH-----HCCTTSCCHHHHHHHH
T ss_pred ccccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhc-----cCCCCCCCHHHHHHHH
Confidence 267889999999999999999999999988742 22332 3479999999999997
No 22
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.85 E-value=8.5e-22 Score=199.24 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=105.5
Q ss_pred CCccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c---CC
Q 005630 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A---GF 629 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~---g~ 629 (687)
.+++|||||||++.+|..++++| |+|||+.|++||+.++++|. ..+++.|||||+.||+|||+++ . ++
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 87 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK----DIHFMNAYSSDSGRAIETANLVLKYSEQSKL 87 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTT----TSCEEEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHHhcccCCC
Confidence 45889999999999999988888 99999999999999998764 5689999999999999999999 2 47
Q ss_pred CcccccccccccccccCCCCHHHHHHhCHHH----------------HHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE----------------YEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 630 ~v~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e----------------~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++..++.|+|+++|.|+|++.+++.+.+|.. +..|..+. ..+|+|||+.++..|+
T Consensus 88 ~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gEs~~~~~~R~ 158 (237)
T 3r7a_A 88 KLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAA--DPTKQAEDWELFSTRI 158 (237)
T ss_dssp CEEECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHHH--CTTCCSCCHHHHHHHH
T ss_pred CeeeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhhc--CCCCCCCCHHHHHHHH
Confidence 8899999999999999999999998876432 33443321 2678999999999997
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.80 E-value=1.6e-20 Score=193.90 Aligned_cols=126 Identities=25% Similarity=0.315 Sum_probs=103.5
Q ss_pred CCCCccEEEeccCCccccc------------CCC------------------cCC---CCCCCHHHHHHHHHHHHHHHHH
Q 005630 556 HLTPRPILLTRHGESRDNV------------RGR------------------IGG---DTILSDAGEIYAKKLANFVEKR 602 (687)
Q Consensus 556 ~~~~~~I~LVRHGeS~~n~------------~~~------------------~~g---D~pLSe~G~~qA~~La~~L~~~ 602 (687)
.+++++||||||||+.+|+ .++ ++| |+|||+.|++||++++++|.+.
T Consensus 6 ~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~~ 85 (273)
T 3d4i_A 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLDS 85 (273)
T ss_dssp TSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 3456899999999999852 222 333 9999999999999999998765
Q ss_pred hccCCCCEEEecCcHHHHHhhhcc---cC----CCccccccccc-ccccccCC----CCHHHHHHhCHH---HHHHHHcC
Q 005630 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVCDG----MTYEEIKKNMPE---EYEARKKD 667 (687)
Q Consensus 603 l~~~~~~~V~tSpl~Ra~qTA~~i---~g----~~v~~~~~L~E-i~~G~~EG----~t~~ei~~~~P~---e~~~~~~d 667 (687)
+.+++.|||||+.||+|||+++ .+ .++..++.|+| +++|.|+| ++.+++.+.+|+ .+..|..+
T Consensus 86 --~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~ 163 (273)
T 3d4i_A 86 --GVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR 163 (273)
T ss_dssp --TCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG
T ss_pred --CCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC
Confidence 5689999999999999999998 34 67888999999 99999999 699999887763 34444321
Q ss_pred CCCCCCCCCCCHHHHHHhh
Q 005630 668 KLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 668 ~~~~r~PgGES~~dl~~Rv 686 (687)
..+|+|||+.++.+|+
T Consensus 164 ---~~~p~gEs~~~~~~R~ 179 (273)
T 3d4i_A 164 ---CSLMPAESYDQYVERC 179 (273)
T ss_dssp ---GGCCTTCCHHHHHHHH
T ss_pred ---CcCCCCCCHHHHHHHH
Confidence 3578999999999997
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.79 E-value=3.9e-20 Score=190.26 Aligned_cols=125 Identities=23% Similarity=0.151 Sum_probs=99.4
Q ss_pred CCccEEEeccCCcccc----------------------------cCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhccC
Q 005630 558 TPRPILLTRHGESRDN----------------------------VRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSE 606 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n----------------------------~~~~~~g---D~pLSe~G~~qA~~La~~L~~~l~~~ 606 (687)
++++||||||||+.+| ..++++| |.|||+.|++||+++++.|.+. +.
T Consensus 3 ~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~--~~ 80 (263)
T 3c7t_A 3 SRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMA--GV 80 (263)
T ss_dssp -CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHC--CC
Confidence 4689999999999983 3455543 9999999999999999998754 56
Q ss_pred CCCEEEecCcHHHHHhhhcc---cC----CCccccccccc-cccccc---CCCCHHHHHHhCHHHHHHHHcCCCCCCCCC
Q 005630 607 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVC---DGMTYEEIKKNMPEEYEARKKDKLRYRYPR 675 (687)
Q Consensus 607 ~~~~V~tSpl~Ra~qTA~~i---~g----~~v~~~~~L~E-i~~G~~---EG~t~~ei~~~~P~e~~~~~~d~~~~r~Pg 675 (687)
+++.|||||+.||+|||+++ .+ .++..++.|+| +++|.| +|++.+++.+.+|.. ..+....... .|+
T Consensus 81 ~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~-~~~~~~~~~~-~p~ 158 (263)
T 3c7t_A 81 SIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNV-DMTYKPYVEM-DAS 158 (263)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCB-CTTCCCSCCC-CSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCc-cccccccccC-CCC
Confidence 89999999999999999998 34 77888999999 997554 889999999887641 1111222222 389
Q ss_pred CCCHHHHHHhh
Q 005630 676 GESYLDVIQRQ 686 (687)
Q Consensus 676 GES~~dl~~Rv 686 (687)
|||+.++.+|+
T Consensus 159 gEs~~~~~~Rv 169 (263)
T 3c7t_A 159 AETMDEFFKRG 169 (263)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999997
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.78 E-value=1.1e-19 Score=187.12 Aligned_cols=103 Identities=16% Similarity=0.051 Sum_probs=90.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cC----CCcccccccccccccccCC-----
Q 005630 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG----- 647 (687)
Q Consensus 580 gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g----~~v~~~~~L~Ei~~G~~EG----- 647 (687)
.|+|||+.|++||+.++++|++. +..++.|||||+.||+|||+.+ .+ +++..++.|+| +|.|+|
T Consensus 54 ~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~ 129 (264)
T 3mbk_A 54 KDAPITVFGCMQARLVGEALLES--NTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLP 129 (264)
T ss_dssp TSCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCcCEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCC
Confidence 49999999999999999999765 5789999999999999999998 33 47889999999 689999
Q ss_pred --CCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 648 --MTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 648 --~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
++.+++.+.+|.....|..+....++|+|||+.|+..|+
T Consensus 130 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 170 (264)
T 3mbk_A 130 AWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRS 170 (264)
T ss_dssp CCCCHHHHHHTTCCBCTTCCCSSCGGGCCTTCCHHHHHHHH
T ss_pred CCCCHHHHHHhCCCcchhhccccCcccCCCCCCHHHHHHHH
Confidence 589999999887777777666677889999999999997
No 26
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=154.30 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc----CCCceEEEEecCCCCCceeeEEEE---ecCC
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLL---KPKY 99 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~i---~~~~ 99 (687)
-+.+.-|+|+|++|+ ..++.++|+||+++||+||++||++|... ..+.|.+++++|.. .+|||||++ ++.+
T Consensus 5 s~~~v~V~F~v~~~~-~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~-~~~eYKyvi~~~~~~~ 82 (131)
T 2z0b_A 5 SSGPSQVAFEIRGTL-LPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRG-VSVQYRYFKGYFLEPK 82 (131)
T ss_dssp -CCCEEEEEEEECCC-CTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTT-CCEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEEeeec-CCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCC-CcEEEEEEEEeecCcc
Confidence 346789999999988 88999999999999999999999999999 89999999999664 679999999 7753
Q ss_pred CC------CceeeccCC-CccccCCC
Q 005630 100 GN------GPCIVEEGP-NRLLTGGA 118 (687)
Q Consensus 100 ~~------~~~~wE~g~-NR~l~~~~ 118 (687)
+. ....||+|+ ||+|..+.
T Consensus 83 ~~~g~~~v~~~~WE~g~~NR~l~~~~ 108 (131)
T 2z0b_A 83 TIGGPCQVIVHKWETHLQPRSITPLE 108 (131)
T ss_dssp C----CEEEEEEECCSSCCEEECCCS
T ss_pred ccCCccccceeeECCCCCCcEEecCC
Confidence 33 556999999 99999874
No 27
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=99.70 E-value=1.6e-17 Score=149.92 Aligned_cols=90 Identities=20% Similarity=0.392 Sum_probs=78.4
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCC----CceEEEEecCCCCCceeeEEEEecCCCCCc
Q 005630 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (687)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~i~~~~~~~~ 103 (687)
+++.-|+|+|.+| +..++.++|+||++.||+||+++|++|+..++ +.|.+++++|.. ..|||||++++. +..
T Consensus 4 ~~~v~V~F~v~~~-t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~-~~~eYKy~v~~~--~g~ 79 (108)
T 1ac0_A 4 PTAVAVTFDLTAT-TTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAG-ESFEYKFIRIES--DDS 79 (108)
T ss_dssp CCCCCEEEEEECC-CCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSS-SCEECCCEECCS--SSC
T ss_pred CCeEEEEEEEeeE-CCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCC-CeEEEEEEEEcC--CCC
Confidence 5678899999998 78899999999999999999999999999855 999999999654 569999999763 334
Q ss_pred eeeccCCCccccCCCCCC
Q 005630 104 CIVEEGPNRLLTGGALQG 121 (687)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~ 121 (687)
+.||+|+||.+..|....
T Consensus 80 ~~WE~g~nR~~~~p~~~~ 97 (108)
T 1ac0_A 80 VEWESDPNREYTVPQACG 97 (108)
T ss_dssp CCCCCSSCCEECCCSSSS
T ss_pred EEeccCCCEEEECCCCCC
Confidence 569999999999887544
No 28
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.64 E-value=8.1e-17 Score=161.15 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=63.1
Q ss_pred CCCccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c-CCCcc
Q 005630 557 LTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKI 632 (687)
Q Consensus 557 ~~~~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~-g~~v~ 632 (687)
.++++|||||||++.+|..+ -..|.|||+.|++||+++++.|++.+...+++.|||||+.||+|||+.+ . +.++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 34588999999999999764 2239999999999999999999876655689999999999999999999 2 56788
Q ss_pred cccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 633 ~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
.++.|+| |+++.+ +. .+ ....|+|||+.++.+|+
T Consensus 98 ~~~~L~E-------G~~~~~------~~------~~-~~~~~~gEs~~~~~~R~ 131 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLP------DP------LP-RHSKFDAQKIKEDNKRI 131 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCH
T ss_pred eCccccC-------CCCCCC------CC------Cc-ccCCCCCccHHHHHHHH
Confidence 8899998 455431 10 11 12237899999999886
No 29
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.63 E-value=4.5e-16 Score=153.82 Aligned_cols=107 Identities=26% Similarity=0.294 Sum_probs=79.8
Q ss_pred CCCCccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---c-CCCc
Q 005630 556 HLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPK 631 (687)
Q Consensus 556 ~~~~~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~-g~~v 631 (687)
.+.+++|||||||++ |..+++..|.|||+.|++||+.+++.|... +.+++.|||||+.||+|||+.+ . +.++
T Consensus 7 ~~~~~~i~lvRHGe~--n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 82 (202)
T 3mxo_A 7 AKATRHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASL--GLKFNKIVHSSMTRAIETTDIISRHLPGVCK 82 (202)
T ss_dssp CSSCEEEEEEECCCB--CTTCSSGGGCCBCHHHHHHHHHHHHHHHTT--CCCCSEEEEESSHHHHHHHHHHHHTSTTCCE
T ss_pred CCCceEEEEEeCccc--cCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhCCCCCe
Confidence 345689999999994 666777679999999999999999988653 4689999999999999999999 3 6788
Q ss_pred ccccccccccccccCCCCHHHHHHhCHHHHHHHHcCCCCCCCCCCCCHHHHHHhh
Q 005630 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRQ 686 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~t~~ei~~~~P~e~~~~~~d~~~~r~PgGES~~dl~~Rv 686 (687)
..++.|+| |+++++ .+| +..|. |++|++.++.+|+
T Consensus 83 ~~~~~L~E-------g~~~~~---~~~--~~~w~--------~~~es~~~~~~R~ 117 (202)
T 3mxo_A 83 VSTDLLRE-------GAPIEP---DPP--VSHWK--------PEAVQYYEDGARI 117 (202)
T ss_dssp EEEGGGCC-------CCC---------------------------CTHHHHHHHH
T ss_pred eeCccccc-------CCccCC---CCc--HHhhc--------cCCcccccHHHHH
Confidence 88999998 444432 211 33443 5789999999886
No 30
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=99.57 E-value=4.3e-15 Score=172.65 Aligned_cols=96 Identities=26% Similarity=0.317 Sum_probs=85.8
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cccc---cCCCceEEEEecCCCCCceeeEEEEecCCCCC
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~ 102 (687)
.+++.-|+|+|++|++..++.|+|+||+++||+||++||+ +|+. .+.+.|.+++++|. ..+|||||++++.+
T Consensus 580 ~~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~-~~~~eyK~~~~~~~--- 655 (683)
T 3bmv_A 580 TGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPA-GTTIQFKFIKKNGN--- 655 (683)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEET-TCEEEEEEEEESSS---
T ss_pred CCCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCC-CCcEEEEEEEEcCC---
Confidence 4679999999999999999999999999999999999999 9999 89999999999965 47899999999853
Q ss_pred ceeeccCCCccccCCCCCCCceEE
Q 005630 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (687)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (687)
.+.||+|+||++..|.....++.+
T Consensus 656 ~~~WE~g~Nr~~~~~~~~~~~~~~ 679 (683)
T 3bmv_A 656 TITWEGGSNHTYTVPSSSTGTVIV 679 (683)
T ss_dssp CCEECCSSCEEEECCSSSCEEEEE
T ss_pred ceEecCCCCeeEECCCCCceEEEe
Confidence 789999999999999865444433
No 31
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=99.56 E-value=4.5e-15 Score=172.58 Aligned_cols=96 Identities=27% Similarity=0.354 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cccc---cCCCceEEEEecCCCCCceeeEEEEecCCCCC
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~ 102 (687)
.+++.-|+|+|++|++..++.|+|+||+++||+||++||+ +|.. .+.+.|.+++++|. ..+|||||++++.+
T Consensus 583 ~~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~-~~~~eyK~~~~~~~--- 658 (686)
T 1d3c_A 583 SGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPA-GKTIEFKFLKKQGS--- 658 (686)
T ss_dssp SSSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEET-TCEEEEEEEEEETT---
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCC-CCcEEEEEEEEcCC---
Confidence 3579999999999999999999999999999999999999 9999 99999999999965 47899999999853
Q ss_pred ceeeccCCCccccCCCCCCCceEE
Q 005630 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (687)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (687)
.+.||+|+||++..|.....++..
T Consensus 659 ~~~WE~g~Nr~~~~~~~~~~~~~~ 682 (686)
T 1d3c_A 659 TVTWEGGSNHTFTAPSSGTATINV 682 (686)
T ss_dssp EEEECCSSCEEEECCSSSCEEEEE
T ss_pred ceEecCCCCeEEECCCCCcEEEEE
Confidence 889999999999999866544433
No 32
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=99.56 E-value=4.8e-15 Score=172.18 Aligned_cols=97 Identities=27% Similarity=0.357 Sum_probs=86.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cccc---cCCCceEEEEecCCCCCceeeEEEEecCCCCC
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~~ 102 (687)
.+++.-|+|+|++|++..+|+|+|+||+++||+||++||+ +|.. .+.+.|.+++++|. ..+|||||++++. ..
T Consensus 576 ~~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~-~~~~eyK~v~~~~--~~ 652 (680)
T 1cyg_A 576 TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPE-GKTIEFKFIKKDS--QG 652 (680)
T ss_dssp SSCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEES-SCEEEEEEEEECT--TS
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCC-CCcEEEEEEEEeC--CC
Confidence 3579999999999999999999999999999999999999 9999 99999999999965 4789999999994 34
Q ss_pred ceeeccCCCccccCCCCCCCceEE
Q 005630 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (687)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (687)
.+.||+|+||++..|.....++..
T Consensus 653 ~~~WE~g~Nr~~~~~~~~~~~~~~ 676 (680)
T 1cyg_A 653 NVTWESGSNHVYTTPTNTTGKIIV 676 (680)
T ss_dssp CEEECCSSCEEEECCSSSCEEEEE
T ss_pred CeEeCCCCCeeEECCCCCcEEEEE
Confidence 589999999999999866544443
No 33
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.50 E-value=3.1e-14 Score=136.21 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=56.1
Q ss_pred ccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc
Q 005630 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i 626 (687)
|+|||||||++++|..+ ..|.|||+.|++||++++++|.+. +.+++.|||||+.||+|||+++
T Consensus 1 m~l~LvRHg~t~~n~~g--~~d~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i 63 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAAS--DSVRPLTTNGCDESRLMANWLKGQ--KVEIERVLVSPFLRAEQTLEEV 63 (161)
T ss_dssp CEEEEEECCCBCSCSSS--GGGCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHH
T ss_pred CEEEEEeCCCcCCCCCC--CCcCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCchHHHHHHHHHH
Confidence 47999999999999743 239999999999999999998764 4689999999999999999998
No 34
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.49 E-value=3.1e-14 Score=137.79 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=63.5
Q ss_pred CccEEEeccCCcccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCC--c
Q 005630 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP--K 631 (687)
Q Consensus 559 ~~~I~LVRHGeS~~n~~~~~~g--D~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~--v 631 (687)
+++|||||||++.+|..+ +| |.|||++|++||++++++|.+. ...++.|||||+.||+|||+++ .+.+ +
T Consensus 8 M~~l~LvRHg~t~~n~~~--~g~~d~pLt~~G~~qa~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 83 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADR--RYRPDLILSSTAARCRQTTQAWQRAFNEGIDI 83 (173)
T ss_dssp CCEEEEEECCCBCC-------CGGGCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSSHHHHHHHHHHHHHHC--CEE
T ss_pred ccEEEEEeCCCcCCCCCC--CCcccCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHhcCCCCCe
Confidence 478999999999999755 34 8999999999999999999765 5689999999999999999998 4554 4
Q ss_pred ccccccccccc
Q 005630 632 IQWRALDEINA 642 (687)
Q Consensus 632 ~~~~~L~Ei~~ 642 (687)
..++.|.|.++
T Consensus 84 ~~~~~l~e~~~ 94 (173)
T 2rfl_A 84 VYIDEMYNARS 94 (173)
T ss_dssp EECGGGSSCSS
T ss_pred EECHhHhcCCH
Confidence 56777877654
No 35
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=99.46 E-value=1.2e-13 Score=155.61 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=84.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccc-ccccccCCC-ceEEEEecCCCCCceeeEEEEecCCCCCce
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMGRESAS-MWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~ka-l~M~~~~~~-~W~~~l~~~~~~~~leyKf~i~~~~~~~~~ 104 (687)
.+.+.-|+|+|++|+...+|.|+|+||++.||+||++|| ++|+..+.+ .|.+++++|.. .+|||||++++. +....
T Consensus 416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~-~~~eYKyv~~~~-~g~v~ 493 (516)
T 1vem_A 416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAE-RNIEFKAFIKSK-DGTVK 493 (516)
T ss_dssp SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETT-CCEEEEEEEECT-TSCEE
T ss_pred ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCC-CcEEEEEEEEeC-CCCee
Confidence 367899999999999999999999999999999999999 799998887 99999999764 579999999873 33444
Q ss_pred eeccCCCccccCCCCCCCceEE
Q 005630 105 IVEEGPNRLLTGGALQGDSRSA 126 (687)
Q Consensus 105 ~wE~g~NR~l~~~~~~~~~~~~ 126 (687)
.||.|+||++..|... +++++
T Consensus 494 ~WE~g~NR~~~~p~~~-~~~~~ 514 (516)
T 1vem_A 494 SWQTIQQSWNPVPLKT-TSHTS 514 (516)
T ss_dssp EECSSCEEESSCCSSC-CEEEE
T ss_pred EEeCCCCEEEecCCCC-CeEEe
Confidence 8999999999998866 55443
No 36
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=99.40 E-value=7.8e-13 Score=151.52 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=78.8
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCC----CceEEEEecCCCCCceeeEEEEecCCCCC
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~i~~~~~~~ 102 (687)
.+++.-|+|+|+++ +..+|.|+|+||++.||+||++||++|+..++ +.|.+++++|. ...|||||++++.+ .
T Consensus 493 ~~~~v~v~F~v~~~-t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~-~~~~eYKyvv~~~~--g 568 (599)
T 2vn4_A 493 TPTSVAVTFHELVS-TQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEA-GDVVEYKYINVGQD--G 568 (599)
T ss_dssp CCSEEEEEEEEECC-CCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEET-TCEEEEEEEEECTT--C
T ss_pred CCCeEEEEEEEeEE-cCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCC-CCcEEEEEEEECCC--C
Confidence 35678999999997 88899999999999999999999999999986 99999999955 45799999998843 3
Q ss_pred ceeeccCCCccccCCCC
Q 005630 103 PCIVEEGPNRLLTGGAL 119 (687)
Q Consensus 103 ~~~wE~g~NR~l~~~~~ 119 (687)
.+.||.|+||++..|..
T Consensus 569 ~~~WE~g~NR~~~~p~~ 585 (599)
T 2vn4_A 569 SVTWESDPNHTYTVPAV 585 (599)
T ss_dssp CEEECCSSCEEEECCCC
T ss_pred ceEeCCCCCEEEecCcc
Confidence 46699999999998865
No 37
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=99.34 E-value=8.6e-14 Score=157.06 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccc-ccCCCceEEEEecCCCCCceeeEEEEecCCCC-Cce
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPC 104 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~-~~~~~~W~~~l~~~~~~~~leyKf~i~~~~~~-~~~ 104 (687)
.+.+.-|+|+|.+++...+|.|+|+||++.||+||++||++|+ ..+.+.|.+++++|. ..+|||||++++.+.. ..+
T Consensus 427 ~~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~-~~~~eyKy~~~~~~~~~~~~ 505 (527)
T 1gcy_A 427 PGALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPA-GQNEEWKCLIRNEANATQVR 505 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCC-CCcEEEEEEEEeCCCCccee
Confidence 3568999999999999999999999999999999999999999 578999999999976 4579999999875443 468
Q ss_pred eeccCCCccccCCC
Q 005630 105 IVEEGPNRLLTGGA 118 (687)
Q Consensus 105 ~wE~g~NR~l~~~~ 118 (687)
.||.|+||++..|.
T Consensus 506 ~We~g~nr~~~~~~ 519 (527)
T 1gcy_A 506 QWQGGANNSLTPSE 519 (527)
T ss_dssp --------------
T ss_pred EecCCCCeeEECCC
Confidence 89999999999774
No 38
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.33 E-value=3.2e-12 Score=140.31 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=94.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
...|.+|+|+|+|||||||+|++|++.+++..++.|.+ + .+..+.+.+..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~-------------------~~~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G-------------------SWQRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C-------------------SHHHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H-------------------HHHHHHHHHHHHHh---
Confidence 34678999999999999999999999877665555443 1 12333444444444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHH
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (687)
.|..||+|++|.....|+.+.++ .+.++.+.+|.+.|+ .+++.+|+..|......... .++..+
T Consensus 308 -----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~~--~~~~~~------- 372 (416)
T 3zvl_A 308 -----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHNNRFREMTDPSHAP--VSDMVM------- 372 (416)
T ss_dssp -----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCCC--CCHHHH-------
T ss_pred -----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcCC--CCHHHH-------
Confidence 78999999999999999999888 666777778877775 66677777776542222122 234443
Q ss_pred HhhhhccccCCC--C-CceEEeec
Q 005630 507 ANYEKVYEPVDE--G-SYIKMIDM 527 (687)
Q Consensus 507 ~~y~~~yEPl~e--~-~yik~in~ 527 (687)
..+.+.||+++. + .+|..+|+
T Consensus 373 ~~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 373 FSYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp HHHHHHCCCCCGGGTCSEEEEECC
T ss_pred HHHHHhcCCCCcccCCcEEEEEec
Confidence 444555676653 2 67777776
No 39
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.32 E-value=1.1e-12 Score=129.28 Aligned_cols=75 Identities=21% Similarity=0.188 Sum_probs=61.6
Q ss_pred CCccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc-cCCCcccccc
Q 005630 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWRA 636 (687)
Q Consensus 558 ~~~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i-~g~~v~~~~~ 636 (687)
.+++|||||||+++|+.. ..|.|||++|++||+.++++|++. ...++.|||||+.||+|||+.+ ...++.....
T Consensus 18 ~~k~L~L~RHaka~~~~~---D~dRpLt~~G~~~a~~~~~~l~~~--~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ 92 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVR---DHDRPLTPDGVRAATAAGQWLRGH--LPAVDVVVCSTAARTRQTLAATGISAQVRYRDE 92 (186)
T ss_dssp CCEEEEEEECCCBCCCSS---GGGCCBCHHHHHHHHHHHHHHHHH--SCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGG
T ss_pred CCcEEEEEECCccCCCCC---CCCCCCCHHHHHHHHHhhhHhhhc--ccCCCccccCcchhHHHHHHhhccccccccccc
Confidence 458899999999998643 228999999999999999999877 7899999999999999999987 3334444333
Q ss_pred c
Q 005630 637 L 637 (687)
Q Consensus 637 L 637 (687)
|
T Consensus 93 l 93 (186)
T 4hbz_A 93 L 93 (186)
T ss_dssp G
T ss_pred c
Confidence 3
No 40
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.32 E-value=3.3e-12 Score=121.39 Aligned_cols=120 Identities=14% Similarity=0.069 Sum_probs=77.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHH-HHhhcCcCceEEehhhhHHHhhCCCCC--CCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR-YLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar-~L~~~gi~tdv~~~gdyRr~~~g~~~~--~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
|.+|+|+|+|||||||+|+.|++ .++ ..+++.|.+|+...+.... ..| ....-........ +.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~-----~~~i~~d~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~ 69 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG-----FYNINRDDYRQSIMAHEERDEYKY----TKKKEGIVTGMQF---DTAK 69 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT-----EEEECHHHHHHHHTTSCCGGGCCC----CHHHHHHHHHHHH---HHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC-----cEEecHHHHHHHhhCCCccchhhh----chhhhhHHHHHHH---HHHH
Confidence 57999999999999999999998 343 3456667778865542111 112 1211111111111 1122
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 428 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 428 ~~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
..+. ..|..+|+|+++.....|+.+.++ ...++++.+|.+.|+ .+++.+|+..|.
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~ 127 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRG 127 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCG
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccc
Confidence 3342 468999999999999888888877 556666666666674 677777776654
No 41
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=99.32 E-value=2.8e-12 Score=149.18 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=80.6
Q ss_pred CCceEEEEEEEEecccC-CCcEEEEecCCCccCCCCc------cccc-cccccCCCceEEEEecCCCCCceeeEEEEecC
Q 005630 27 AGGQFYVSLKMVNIKLK-GDLIPHVYGSVPLVGSWDS------SKAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPK 98 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~-~~~~l~l~Gs~~~LG~Wd~------~kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~i~~~ 98 (687)
.+.+.-|+|+|++++.. .+|.|+|+||++.||+|++ ++|+ +|...+.+.|.+++++|.. .+|||||++++.
T Consensus 578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~-~~~eyKy~~~~~ 656 (686)
T 1qho_A 578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAG-KTIQFKFFIKRA 656 (686)
T ss_dssp SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETT-CEEEEEEEEECT
T ss_pred CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCC-CeEEEEEEEEcC
Confidence 35788999999999998 9999999999999999999 9999 9999999999999999764 579999999874
Q ss_pred CCCCceeeccCCCccccCCCC
Q 005630 99 YGNGPCIVEEGPNRLLTGGAL 119 (687)
Q Consensus 99 ~~~~~~~wE~g~NR~l~~~~~ 119 (687)
+. .+.||.|+||++..|..
T Consensus 657 ~~--~~~We~~~nr~~~~~~~ 675 (686)
T 1qho_A 657 DG--TIQWENGSNHVATTPTG 675 (686)
T ss_dssp TS--CEEECCSSCEEEECCSS
T ss_pred CC--CEEeCCCCCeeEECCCC
Confidence 43 45999999999998863
No 42
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.32 E-value=1.4e-12 Score=126.99 Aligned_cols=65 Identities=26% Similarity=0.248 Sum_probs=55.8
Q ss_pred ccEEEeccCCcccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc
Q 005630 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (687)
Q Consensus 560 ~~I~LVRHGeS~~n~~~~~~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i 626 (687)
|+|||||||++.+|..+....|.|||++|++||++++++|.+. +..++.|||||+.||+|||+.+
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~--~~~~~~i~sSp~~Ra~qTa~~l 65 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKL--GRQFDLIVTSPLIRARQTAEIL 65 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHH
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHH
Confidence 5799999999999865433338999999999999999999765 5789999999999999999999
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.28 E-value=3.3e-11 Score=116.05 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=75.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
+|.+|+|+|+|||||||+|+.|+++|++. +++.|.+|+.+.+.. . .......+.+...+...+.+...-
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~ 72 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL---G---WSDREWSRRVGATAIMMLYHTAAT 72 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH---C---CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc---C---ccchHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999999999998643 566777776543311 0 111222222222222222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
+...|..||+|+++....+++.+.++ ...+.+.++|.+.|+ ++++.+|+..|..
T Consensus 73 ~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 73 ILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 23368889999999433344455555 344566667777775 7778888877654
No 44
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.24 E-value=2.4e-12 Score=138.61 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=73.1
Q ss_pred CCCCccEEEeccCCcccccCCCc-CCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEecCcHHHHHhhhcc---cCCCc
Q 005630 556 HLTPRPILLTRHGESRDNVRGRI-GGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (687)
Q Consensus 556 ~~~~~~I~LVRHGeS~~n~~~~~-~gD~pLSe~G~~qA~~La~~L~~~l~~~~~~~V~tSpl~Ra~qTA~~i---~g~~v 631 (687)
...+++|||||||++.++..... ..|.|||+.|++||++++++|. ...++.|||||+.||+|||+++ .+.++
T Consensus 179 ~~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~----~~~~d~i~sSp~~Ra~~Ta~~~~~~~~~~~ 254 (364)
T 3fjy_A 179 AATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELA----CFNPTRLATSPWLRCQETLQVLSWQTERPM 254 (364)
T ss_dssp GGGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHG----GGCEEEEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred CCcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhc----cCCCCEEEEcChHHHHHHHHHHHHhcCCCe
Confidence 34568999999999997754211 1288999999999999998875 4589999999999999999998 57888
Q ss_pred ccccccccccccccCCC
Q 005630 632 IQWRALDEINAGVCDGM 648 (687)
Q Consensus 632 ~~~~~L~Ei~~G~~EG~ 648 (687)
...+.|+|..++...+.
T Consensus 255 ~~~~~l~e~~~~~~~~~ 271 (364)
T 3fjy_A 255 EHINTLTEDAFAEHPAV 271 (364)
T ss_dssp EECGGGSHHHHHHCHHH
T ss_pred EECcccCccccccCHHH
Confidence 88899999887765443
No 45
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.22 E-value=8.7e-11 Score=120.51 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=82.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHH-HHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMIS 428 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~-~vA~~~L~dl~~ 428 (687)
++.+|+|+|+|||||||+|+.|+++|...|....+++.|.+|+.+.+ | ....+..++... ..+. .
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~-~~~~e~~~~~~~~~~i~-------~ 68 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------W-KEKYEEFIKKSTYRLID-------S 68 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------C-CGGGHHHHHHHHHHHHH-------H
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------h-hHHHHHHHHHHHHHHHH-------H
Confidence 46799999999999999999999998877777666788888764432 2 333333322221 1222 2
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhh
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 482 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r 482 (687)
.+. . ..||+|+++.....|+.+.++ ...+.+.++|.+.|+ ++++.+|+..|
T Consensus 69 ~l~-~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R 120 (260)
T 3a4m_A 69 ALK-N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIER 120 (260)
T ss_dssp HHT-T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHT
T ss_pred Hhh-C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhC
Confidence 233 4 889999999999999988887 556767777777776 66666777665
No 46
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.20 E-value=1.4e-10 Score=112.02 Aligned_cols=119 Identities=20% Similarity=0.266 Sum_probs=82.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++.+|+++|+|||||||+++.|++.|...+.+..+++.|.+|..+. ....|....+...++.+..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~-------- 80 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS---EGAGFTREERLRHLKRIAWIARL-------- 80 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT---TTCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh---hccCCChhhHHHHHHHHHHHHHH--------
Confidence 5689999999999999999999999998888888888888865332 22233322222223322223322
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~ 480 (687)
+...|.+||+|.++.....|+.++++ ...+.+.++|.+.|+ ++++.+|+.
T Consensus 81 ~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~ 131 (186)
T 2yvu_A 81 LARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDP 131 (186)
T ss_dssp HHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCH
T ss_pred HHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhh
Confidence 33478999999999988888888887 544555666666775 666666654
No 47
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.18 E-value=2e-10 Score=131.10 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=98.4
Q ss_pred CCCCccchhhHHHHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcC-cCceEEehhhhHHHhhCCCCCCCCc
Q 005630 326 SMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFF 404 (687)
Q Consensus 326 ~~p~~~~~~a~a~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g-i~tdv~~~gdyRr~~~g~~~~~~f~ 404 (687)
..|.+......+........+.++++++|+|+|+|||||||+|++|+++|++.| ..+..++.|.+|+.+ .....|.
T Consensus 371 ~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l---~~~~~f~ 447 (573)
T 1m8p_A 371 HIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL---SSELGFT 447 (573)
T ss_dssp CCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT---CTTCCCS
T ss_pred CCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh---ccccCCC
Confidence 344433322344444445545677889999999999999999999999999888 888889988887743 3445565
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005630 405 RADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (687)
Q Consensus 405 ~~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rr 478 (687)
..++.+.++++.++++..++ .|.+||+|.+++.+..|+.++++ .+.+ .++.|.+.|+ .+++.+|
T Consensus 448 ~~er~~~i~ri~~v~~~~~~--------~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R 512 (573)
T 1m8p_A 448 REDRHTNIQRIAFVATELTR--------AGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQS 512 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh--------CCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHH
Confidence 54555556655556655444 89999999999999999999988 4333 3444445565 5566655
No 48
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.17 E-value=2.1e-10 Score=118.90 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=79.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC--CCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~--~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
|.+|+|+|+|||||||+|++|++.+ ....+++.|.+|+.+.+.... ..|+ ...-....+. +.+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~~~~---~~~~~~~ 70 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYT----KKKEGIVTGM---QFDTAKS 70 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CC----HHHHHHHHHH---HHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccc----hhhhhHHHHH---HHHHHHH
Confidence 5799999999999999999999863 123467778888866542111 1222 1111111111 1122233
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 429 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 429 ~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+. ..|..||+|+++.....|+.+.++ .+.++++.+|.+.| +.+++.+|+..|.
T Consensus 71 ~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 71 ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRG 127 (301)
T ss_dssp HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCG
T ss_pred HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhcc
Confidence 342 468999999999999999988877 56677777777777 4777777777764
No 49
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.10 E-value=7.8e-10 Score=108.41 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=80.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++.+|+++|+|||||||+++.|++.|...|.-+..++.+++++.. .....|..+.....++....++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------- 92 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL---NRDLSFKAEDRAENIRRVGEVAKL-------- 92 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh---hcccCcChHHHHHHHHHHHHHHHH--------
Confidence 578999999999999999999999998666555678887776522 223344433333334444444444
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 479 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI 479 (687)
+...|..+|++..++.++.|+.++++.. +..++.|.+.|+ .+++.+|+
T Consensus 93 ~~~~~~~vi~~~~~~~~~~r~~~~~~~~-~~~~~~v~L~a~-~e~~~~R~ 140 (200)
T 3uie_A 93 FADAGIICIASLISPYRTDRDACRSLLP-EGDFVEVFMDVP-LSVCEARD 140 (200)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHTSC-TTSEEEEEECCC-HHHHHHHC
T ss_pred HHhCCceEEEecCCchHHHHHHHHHhcC-CCCEEEEEEeCC-HHHHHHhc
Confidence 3347999999999999999999988733 234544555665 56666664
No 50
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.10 E-value=7e-10 Score=105.68 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCC---C-CCCc---CCCCHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ---S-ADFF---RADNPEGMEARNEVAALAM 423 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~---~-~~f~---~~~~e~~~~~~~~vA~~~L 423 (687)
+.+|+++|+|||||||+|++|++.|+. ....++.|++++.+.+... . ..|. .......++.........+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999753 2334556777664433111 0 0111 1112233332222111111
Q ss_pred HHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 424 EDMISWMHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 424 ~dl~~~L~~~G~iVIlDAtn~~-~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
. -+...|..||+|+++.. ...|+.+++... +..++++.+.|+ .+++.+|++.|.
T Consensus 80 ~----~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~-~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 V----AMARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCD-GAVAEGRETARG 134 (178)
T ss_dssp H----HHHHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECC-HHHHHHHHHHTS
T ss_pred H----HHHhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECC-HHHHHHHHHhhC
Confidence 1 12336889999998863 455666666632 234556666675 777888887664
No 51
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.08 E-value=1e-09 Score=114.71 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=87.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCC-CCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-SADFFRADNPEGMEARNEVAALAMEDM 426 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~-~~~f~~~~~e~~~~~~~~vA~~~L~dl 426 (687)
...|.+|+|+|.|||||||+|++|++.+. .....++.|.+|..+.+... ...| .+...... ..........+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~~-~~~a~~~~---~~~~~~~~~~~ 102 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKLY-EKDVVKHV---TPYSNRMTEAI 102 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHHH-GGGCHHHH---HHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHHc-cchhhhhh---hHHHHHHHHHH
Confidence 44689999999999999999999998863 13345666777753211000 0001 11111111 11111111111
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHH----HHHHHhhhccCCCCCCCCChHHHHHH
Q 005630 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDII----ERNIRLKIQQSPDYAEEPDFEAGLQD 501 (687)
Q Consensus 427 ~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii----~rrI~~r~~~~pd~s~~~d~e~a~~d 501 (687)
+.-+...|..||+|+++.....+..+++. .+.++.+.++.+.|+ +++. .+|+..|.......... .+++..+.
T Consensus 103 v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~R~-~~~e~~~~ 180 (287)
T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTARA-TPKQAHDI 180 (287)
T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTCCC-CCHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHH
Confidence 22222368899999999998877777766 677887766666675 5666 67777665432222333 34445555
Q ss_pred HHHHHHh
Q 005630 502 FKNRLAN 508 (687)
Q Consensus 502 f~~Ri~~ 508 (687)
..+|+..
T Consensus 181 i~~rl~~ 187 (287)
T 1gvn_B 181 VVKNLPT 187 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566543
No 52
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.08 E-value=6.7e-10 Score=127.63 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
..++.+|+|+|+|||||||+|++|+++|...|+....++.+.+|. +......|..+.+++.++.+.++++..++
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~---~L~~~~~fs~~dree~~r~i~eva~~~l~--- 122 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ---GLNKNLGFSPEDREENVRRIAEVAKLFAD--- 122 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT---TTTTTCCSSHHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh---ccCccccCChhhhHHHHHHHHHHHHHHHh---
Confidence 347899999999999999999999999977788877777766654 33333445445566667666665555444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~ 480 (687)
.|.+||.|.+++.+..|+.++++ .+.+.+++.|.+.|+ .+++.+|+.
T Consensus 123 -----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~ 170 (630)
T 1x6v_B 123 -----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDV 170 (630)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCT
T ss_pred -----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhc
Confidence 89999999888888888999888 555666666666775 666666654
No 53
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.06 E-value=1e-09 Score=108.49 Aligned_cols=117 Identities=24% Similarity=0.235 Sum_probs=80.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
.+.+|+++|+|||||||+|+.|++.|. ..|+....++.+.+|..+ .....|+...+...++.+.+++..+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l---~~~~~~~~~~r~~~~~~~~~~~~~~l~---- 96 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL---NKDLGFSEADRNENIRRIAEVAKLFAD---- 96 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh---ccccCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 568999999999999999999999998 778778888887776533 222344444444445444444444333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCCHHHHHHH
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERN 478 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el~~-------~~~~vvfIE~~c~d~eii~rr 478 (687)
.|.+||+|.++.+...|+.++++.. .+.+.++|.+.|+ ++++.+|
T Consensus 97 ----~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R 148 (211)
T 1m7g_A 97 ----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQR 148 (211)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTS
T ss_pred ----CCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHh
Confidence 7899999977666777888888732 2345566666776 5555555
No 54
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.06 E-value=7.5e-10 Score=125.68 Aligned_cols=144 Identities=20% Similarity=0.201 Sum_probs=98.1
Q ss_pred ccCCCCCccchhhHHHHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCC
Q 005630 323 TKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSAD 402 (687)
Q Consensus 323 ~~~~~p~~~~~~a~a~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~ 402 (687)
.....|++......+........+.++.+.+|+++|+|||||||+|+.|++.|+..|.++.+++.|..|+.+. ....
T Consensus 344 ~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~---~~~~ 420 (546)
T 2gks_A 344 QGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS---RGLG 420 (546)
T ss_dssp TTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC---TTCC
T ss_pred CCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc---cccc
Confidence 3455666665555666666666555667899999999999999999999999999898888999988877543 2334
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005630 403 FFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (687)
Q Consensus 403 f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~ 480 (687)
|...++...++.+.+++..+ .+.|..||+|++++.+..|+.++++ .+.+ +++|.+.|+ .+++.+|+.
T Consensus 421 f~~~er~~~l~~i~~~~~~~--------l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d--~~vV~L~~~-~e~~~~Rl~ 488 (546)
T 2gks_A 421 FSKEDRITNILRVGFVASEI--------VKHNGVVICALVSPYRSARNQVRNMMEEGK--FIEVFVDAP-VEVCEERDV 488 (546)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--------HHTTCEEEEECCCCCHHHHHHHHTTSCTTC--EEEEEEECC-GGGHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHH--------HhCCCEEEEEcCCCCHHHHHHHHHHhhcCC--EEEEEEeCC-HHHHHHHhh
Confidence 43332332233333333332 3378999999999999888888877 3333 344444565 556666653
No 55
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.01 E-value=7.2e-10 Score=108.40 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=69.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH-HhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr-~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
.+.+|+|+|.|||||||+|+.|++.+++..++.|.+.....+. ...+ ..|...... ..+ ..+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g----~~~~~~~~~---~~~--------~~l~~ 81 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEG----IPLTDDDRW---PWL--------AAIGE 81 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHT----CCCCHHHHH---HHH--------HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcC----CCCCchhhH---HHH--------HHHHH
Confidence 3568999999999999999999999876554444332111111 1111 111111111 111 11112
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.+ ..|..+|+|+++.....|+.+.++...... +|.+.|+ .+++.+|+..|..
T Consensus 82 ~~-~~~~~vivd~~~~~~~~~~~l~~~~~~~~~--vi~l~~~-~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 82 RL-ASREPVVVSCSALKRSYRDKLRESAPGGLA--FVFLHGS-ESVLAERMHHRTG 133 (202)
T ss_dssp HH-TSSSCCEEECCCCSHHHHHHHHHTSTTCCE--EEEEECC-HHHHHHHHHHHHS
T ss_pred HH-hcCCCEEEECCCCCHHHHHHHHHhcCCCeE--EEEEeCC-HHHHHHHHHHhhc
Confidence 22 368899999999998888888776422233 4444564 7788888877753
No 56
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.01 E-value=1.3e-09 Score=111.30 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhC---CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEARNEVAALAME 424 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g---~~~~~~f~~~~~e~~~~~~~~vA~~~L~ 424 (687)
...|.+|+|+|+|||||||+|+.|++.++ ....+++.|.+|+.... .....+. ........ .+.....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~---~~~~~~~~---~~~~~~~ 99 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGK---DSVEYTKD---FAGKMVE 99 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSS---TTHHHHHH---HHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCc---hHHHHhhH---HHHHHHH
Confidence 45688999999999999999999999865 23456777777763211 0111111 11111110 0111112
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 425 dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+...+...|..+|+|+++.....+..+..+ .+.++.+.++.+.| +++++.+|+..|.
T Consensus 100 ~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 100 SLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHHH
Confidence 2222233467789999999887766666665 66777766655555 5777777777664
No 57
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.95 E-value=2.1e-09 Score=103.54 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=78.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcC---CCCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFR---ADNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~---~~~e~~~~~~~~vA~~ 421 (687)
++.+|+++|.|||||||+|+.|+++|++.. ++.|++ |+...+.... ..++. ..... ....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~-----i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTH-----LSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE-------TVLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeE-----EcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 457999999999999999999999987644 444443 2211100000 00000 00010 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHH
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~d 501 (687)
.+.+.+.-....|..+|+|+.....+.++.+.......-.++|| .| +++++.+|+..|....+. .+...+.
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l--~~-~~e~~~~R~~~R~~~~~~------~~~~~~~ 146 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYV--DA-GPETMTQRLLKRGETSGR------VDDNEET 146 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEE--EC-CHHHHHHHHHHHHTSSSC------GGGSHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEE--EC-CHHHHHHHHHccCCcCCC------CCCCHHH
Confidence 12222222223578899999777776666655542222234555 45 477778888776432221 2223455
Q ss_pred HHHHHHhhhhccccC
Q 005630 502 FKNRLANYEKVYEPV 516 (687)
Q Consensus 502 f~~Ri~~y~~~yEPl 516 (687)
+.+|+..|.+..+|+
T Consensus 147 ~~~r~~~~~~~~~~~ 161 (196)
T 2c95_A 147 IKKRLETYYKATEPV 161 (196)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777665554443
No 58
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.94 E-value=3.3e-09 Score=101.30 Aligned_cols=121 Identities=19% Similarity=0.102 Sum_probs=65.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCc-CceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH-DTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi-~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
++++|+|+|+|||||||+|+.|+++|+...+ +.+.+ .+.+++.. . .....|... +...+...+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-g~~i~~~~-~-~g~~~~~~~--~~~~~~~~~~i~~------- 71 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-GQALRKLT-P-GFSGDPQEH--PMWIPLMLDALQY------- 71 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-HHHHHHTS-T-TCCSCGGGS--TTHHHHHHHHHHH-------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-HHHHHHhC-c-cccchhhhh--HHHHHHHHHHHHH-------
Confidence 4679999999999999999999999775432 11000 22233322 1 112222111 1111111222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+...|.+||+|+++...+.++.+.+. .+.++.+.+|.+.|+ ++++.+|+..|.
T Consensus 72 ~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R~ 126 (183)
T 2vli_A 72 ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRDG 126 (183)
T ss_dssp HHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC-
T ss_pred HHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhcc
Confidence 233458889999999988777766665 545555545556675 777888887664
No 59
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.93 E-value=1.6e-08 Score=96.89 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=77.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC-C-----CCcC---CCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-A-----DFFR---ADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~-~-----~f~~---~~~e~~~~~~~~vA~ 420 (687)
+|++|+++|.|||||||+|+.|++.+++. +++.|++-+........ . .+.. ..... ....+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~ 73 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE---ITISLLK 73 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHH---HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHH---HHHHHHH
Confidence 36899999999999999999999997654 45555542222111000 0 0000 00111 1111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHhhhc--cCCCCCCCCChHH
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEA 497 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~-~vvfIE~~c~d~eii~rrI~~r~~--~~pd~s~~~d~e~ 497 (687)
..+......+ ..|..+|+|+.....+.++.+........ .-+.|.+.|+ ++++.+|+..|.. .+++ . .
T Consensus 74 ~~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~r~~---~-~--- 144 (196)
T 1tev_A 74 REMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN-NEICIERCLERGKSSGRSD---D-N--- 144 (196)
T ss_dssp HHHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHHTSSCCS---C-C---
T ss_pred HHHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECC-HHHHHHHHHcccccCCCCC---C-C---
Confidence 1122111111 24778999999999887776655422211 2234445565 6677777766643 2222 1 1
Q ss_pred HHHHHHHHHHhhhhcccc
Q 005630 498 GLQDFKNRLANYEKVYEP 515 (687)
Q Consensus 498 a~~df~~Ri~~y~~~yEP 515 (687)
.+.+.+|+..|.+..+|
T Consensus 145 -~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 145 -RESLEKRIQTYLQSTKP 161 (196)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhHHH
Confidence 23445566666555444
No 60
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.92 E-value=1.2e-08 Score=97.80 Aligned_cols=118 Identities=21% Similarity=0.212 Sum_probs=76.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++.+|+++|.|||||||+++.|++.|...|+....++.+..|+.+ .....|....++..++.+...+. .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGL---NKNLGFSPEDREENVRRIAEVAK--------L 72 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHH--------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHH---hhccccccccHHHHHHHHHHHHH--------H
Confidence 467899999999999999999999986667666667776665522 12223322233344444333221 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI 479 (687)
+.+.|.+++.+.+++....|..++++ ...+.+.+.|.+.|+ ++++.+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~ 122 (179)
T 2pez_A 73 FADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRD 122 (179)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHC
T ss_pred HHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHHH
Confidence 33367888888887776667776666 445555555666775 66666665
No 61
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.92 E-value=8.8e-09 Score=99.46 Aligned_cols=145 Identities=15% Similarity=0.216 Sum_probs=81.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCC-C---CCCcC---CCCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFR---ADNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~-~---~~f~~---~~~e~~~~~~~~vA~~ 421 (687)
.+.+|+++|.|||||||+|+.|+++|++. +++.|++ |+....... . ..++. ..... ....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVPSG-------IVLE 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 35689999999999999999999998754 4555554 332210000 0 00000 00111 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-cCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMA-EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~-~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
.+.+.+.-....|..+|+|+.....+.++.+.... ..+ .++|| .| +++++.+|+..|... .+ ..+...+
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~-~~i~l--~~-~~~~~~~R~~~R~~~----~~--~~~~~~~ 148 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQ-LVICM--DC-SADTMTNRLLQMSRS----SL--PVDDTTK 148 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCS-EEEEE--EC-CHHHHHHHHHHTCCC----CS--CHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCC-EEEEE--EC-CHHHHHHHHHcCCCC----CC--CCCCCHH
Confidence 11211111223578999999988887776665432 222 34555 45 577788888776431 11 3455567
Q ss_pred HHHHHHHhhhhccccC
Q 005630 501 DFKNRLANYEKVYEPV 516 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl 516 (687)
.+.+|+..|....+|+
T Consensus 149 ~~~~r~~~~~~~~~~~ 164 (199)
T 2bwj_A 149 TIAKRLEAYYRASIPV 164 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888887776655553
No 62
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.88 E-value=8.1e-10 Score=106.06 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=76.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
+.+|+|+|+|||||||+|+.|+++|++. +++.|++++...|.... .++...++..++.++..+ + ..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~---~----~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIA-WIFEMEGEAGFRRREREM---I----EAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHHHH---H----HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChh-hHHHHhCHHHHHHHHHHH---H----HHH
Confidence 4579999999999999999999998765 45666666655543211 222233333343322211 1 122
Q ss_pred hcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH--HhhhccCCCCCCCCC-hHHHHHHHHHH
Q 005630 431 HEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI--RLKIQQSPDYAEEPD-FEAGLQDFKNR 505 (687)
Q Consensus 431 ~~~G~iVIlDA--tn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI--~~r~~~~pd~s~~~d-~e~a~~df~~R 505 (687)
......+|..+ +......|+.+... + .++|+ .| +++++.+|+ +.+. .+|...+. + .+...+.+.+|
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~~l~~~---~-~vi~L--~~-~~e~l~~Rl~~~~~~-~rp~~~~~-~~~~~l~~~~~~r 142 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQQISET---G-VVIYL--TA-SIDTQLKRIGQKGEM-RRPLFIKN-NSKEKLQQLNEIR 142 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHHHHHHH---E-EEEEE--EC-CHHHHHHHHHCCTTC-SSCCCCCH-HHHHHHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHHHHHhC---C-cEEEE--EC-CHHHHHHHHhhcCCC-CCCCCCCC-CHHHHHHHHHHHH
Confidence 22333444332 22344445444432 2 34454 45 478888888 4433 36766643 2 23344556667
Q ss_pred HHhhhh
Q 005630 506 LANYEK 511 (687)
Q Consensus 506 i~~y~~ 511 (687)
.+.|++
T Consensus 143 ~~~y~~ 148 (185)
T 3trf_A 143 KPLYQA 148 (185)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776654
No 63
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.87 E-value=7.9e-09 Score=98.85 Aligned_cols=147 Identities=13% Similarity=0.229 Sum_probs=77.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcCCCCHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALAME 424 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~~~~e~~~~~~~~vA~~~L~ 424 (687)
.+.+|+|+|.|||||||+|+.|++++++.. ++.|++ |+........ ..++..... .. .++....+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~-----i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~~~~~l~ 75 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVH-----LSAGDLLRQEQQSGSKDGEMIATMIKNGEI-VP---SIVTVKLLK 75 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHTTCTTHHHHHHHHHTTCC-CC---HHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----eeHHHHHHHHHhcCCHHHHHHHHHHHCCCC-CC---HHHHHHHHH
Confidence 467999999999999999999999987544 454443 3322110000 000000000 00 011111111
Q ss_pred HHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHH
Q 005630 425 DMISWMH-EGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (687)
Q Consensus 425 dl~~~L~-~~G~iVIlDAtn~~~e~R~~l~el~~~~~-~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df 502 (687)
..+. ..|..+|+|+.....+.++.+....+.+. .-+.|.+.| +++++.+|+..|...... .+...+.+
T Consensus 76 ---~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~r------~~~~~~~~ 145 (194)
T 1qf9_A 76 ---NAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC-PEEVMTQRLLKRGESSGR------SDDNIESI 145 (194)
T ss_dssp ---HHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHTTSCC------TTCSHHHH
T ss_pred ---HHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEEC-CHHHHHHHHHhccccCCC------CCCCHHHH
Confidence 1111 25788999998888877777766533211 112334456 577788888776431111 11123456
Q ss_pred HHHHHhhhhcccc
Q 005630 503 KNRLANYEKVYEP 515 (687)
Q Consensus 503 ~~Ri~~y~~~yEP 515 (687)
.+|+..|.+..+|
T Consensus 146 ~~ri~~~~~~~~~ 158 (194)
T 1qf9_A 146 KKRFNTFNVQTKL 158 (194)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHhHHH
Confidence 6777666544333
No 64
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=6.1e-09 Score=101.93 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=76.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L 430 (687)
+.+|+++|.|||||||+|+.|++.|++. .++.|++.....|... ..++...++..++.++.. ++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i-~~~~~~~~~~~~~~~e~~-------~l~~l 91 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTV-GELFTERGEAGFRELERN-------MLHEV 91 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcH-HHHHHhcChHHHHHHHHH-------HHHHH
Confidence 4589999999999999999999998654 4566666554433211 122323333333332221 12223
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHH----HHHHHHHH
Q 005630 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG----LQDFKNRL 506 (687)
Q Consensus 431 ~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a----~~df~~Ri 506 (687)
.. +..+|++........++.+..+.+. ..++|+. | +.+++.+|+..+...+|...+. +.+++ .+.|.+|.
T Consensus 92 ~~-~~~~vi~~ggg~~~~~~~~~~l~~~-~~vi~L~--~-~~e~l~~Rl~~~~~~Rp~~~~~-~~~~~~~~i~~~~~~r~ 165 (199)
T 3vaa_A 92 AE-FENVVISTGGGAPCFYDNMEFMNRT-GKTVFLN--V-HPDVLFRRLRIAKQQRPILQGK-EDDELMDFIIQALEKRA 165 (199)
T ss_dssp TT-CSSEEEECCTTGGGSTTHHHHHHHH-SEEEEEE--C-CHHHHHHHHHHTGGGCGGGTTC-CHHHHHHHHHHHHHHHH
T ss_pred hh-cCCcEEECCCcEEccHHHHHHHHcC-CEEEEEE--C-CHHHHHHHHhcCCCCCCCcCCC-ChhhHHHHHHHHHHHHH
Confidence 33 3445556554444333333333322 3455654 5 5788888987323346776665 55333 33444455
Q ss_pred Hhhh
Q 005630 507 ANYE 510 (687)
Q Consensus 507 ~~y~ 510 (687)
+.|+
T Consensus 166 ~~y~ 169 (199)
T 3vaa_A 166 PFYT 169 (199)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 65
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.85 E-value=1.2e-08 Score=99.52 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=79.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcCCCCHHHHHHHHHHHHHH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALA 422 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~~~~e~~~~~~~~vA~~~ 422 (687)
+..|++|+|+|.|||||||+|+.|++++++. +++.|++ |+...+.... ..++..... ... +.....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~-~~~---~~~~~~ 87 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGDL-VPS---DLTNEL 87 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCC-CCH---HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCCc-ccH---HHHHHH
Confidence 3467899999999999999999999998654 4555554 3321110000 000000000 000 001111
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHH
Q 005630 423 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (687)
Q Consensus 423 L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~-vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~ 500 (687)
+.+..... ..|..+|+|+.......++.+..+ .+.+.. .++|.+.|+ ++++.+|+..|. +++ . +. +
T Consensus 88 ~~~~~~~~-~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~--r~~---~-~~----e 155 (201)
T 2cdn_A 88 VDDRLNNP-DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRG--RAD---D-TD----D 155 (201)
T ss_dssp HHHHTTSG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHC--CTT---C-SH----H
T ss_pred HHHHHhcc-cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC--CCC---C-CH----H
Confidence 11111111 235568999988888777777765 433322 234555675 678888887763 232 1 22 3
Q ss_pred HHHHHHHhhhhccccC
Q 005630 501 DFKNRLANYEKVYEPV 516 (687)
Q Consensus 501 df~~Ri~~y~~~yEPl 516 (687)
.+.+|+..|.+..+|+
T Consensus 156 ~~~~r~~~~~~~~~~~ 171 (201)
T 2cdn_A 156 VILNRMKVYRDETAPL 171 (201)
T ss_dssp HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhhHHH
Confidence 4667777776555443
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.84 E-value=1.4e-08 Score=96.75 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=67.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH------HhhCCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALAM 423 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr------~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L 423 (687)
.+.+|+++|.|||||||+++.|+..+++. .++.|++++ ...|. .+.+......++.++.++..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~-----~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAMQ 77 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcE-----EEeCccccchHHHHHhhcCc----CCCccccccHHHHHHHHHHHHH
Confidence 45789999999999999999999987644 445554431 12221 1111111222333333333222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 424 ~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
..|..+|+|+++..++.|+.+++ .+..+.+|.+.|+ ++++.+|+..|.
T Consensus 78 --------~~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~-~e~~~~R~~~R~ 125 (175)
T 1knq_A 78 --------RTNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGD-FDVIESRLKARK 125 (175)
T ss_dssp --------HHCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECC-HHHHHHHHHTST
T ss_pred --------hcCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECC-HHHHHHHHHhcc
Confidence 24778899999888777665543 3333444555664 778888887664
No 67
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.83 E-value=7.1e-09 Score=101.53 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=69.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH------HHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR------RLKHGVNQSADFFRADNPEGMEARNEVAALAM 423 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR------r~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L 423 (687)
.+.+|+|+|.|||||||+++.|+..+++. .++.++++ +...+. .|........+..+..++...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~ 98 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEADAFHSPENIATMQRGI----PLTDEDRWPWLRSLAEWMDARA 98 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE-----EEEGGGGSCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe-----EEcccccccHHHHHHHhcCC----CCCCcccccHHHHHHHHHHHHH
Confidence 45689999999999999999999988543 45555442 112221 1111111222333333333322
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 424 ~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
..|..+|+|++...++.|+.+.++.. .+ .+|.+.|+ ++++.+|+..|.
T Consensus 99 --------~~g~~viid~~~~~~~~~~~l~~~~~-~~--~vv~l~~~-~e~l~~Rl~~R~ 146 (200)
T 4eun_A 99 --------DAGVSTIITCSALKRTYRDVLREGPP-SV--DFLHLDGP-AEVIKGRMSKRE 146 (200)
T ss_dssp --------HTTCCEEEEECCCCHHHHHHHTTSSS-CC--EEEEEECC-HHHHHHHHTTCS
T ss_pred --------hcCCCEEEEchhhhHHHHHHHHHhCC-ce--EEEEEeCC-HHHHHHHHHhcc
Confidence 36788899999998877777665522 23 34445565 788888886664
No 68
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.83 E-value=2.8e-08 Score=92.81 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=65.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHH-HHHHHHHHHH-HHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMED-MIS 428 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~-~~vA~~~L~d-l~~ 428 (687)
++|+++|.|||||||+|+.| +.+++. +++.|++ |+...... .....-....... ...-...+.+ +..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIEA----KPGERLMDFAKRLREIYGDGVVARLCVE 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHHC-------CCHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 58999999999999999999 665543 4554444 33221111 0001101111111 0000011111 122
Q ss_pred HH-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 429 WM-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 429 ~L-~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+ ...+..+|+|+. .....++.+.+.......++|| .| +++++.+|+..|.
T Consensus 72 ~l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l--~~-~~~~~~~R~~~R~ 123 (179)
T 3lw7_A 72 ELGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAV--HS-PPKIRYKRMIERL 123 (179)
T ss_dssp HHCSCCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEE--EC-CHHHHHHHHHTCC
T ss_pred HHHhcCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEE--EC-CHHHHHHHHHhcc
Confidence 33 245889999998 7788888887775433334444 55 5788888887764
No 69
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.76 E-value=8.1e-08 Score=96.74 Aligned_cols=146 Identities=14% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH--------
Q 005630 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------- 416 (687)
Q Consensus 346 ~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------- 416 (687)
....++.+|++.|.|||||+|+|+.|+++++...+ +.|+. |.... ..++.+.....
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI-----stGdllR~~i~----------~~t~lg~~~~~~~~~G~lV 88 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL-----SSGDLLRAEVQ----------SGSPKGKELKAMMERGELV 88 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE-----CHHHHHHHHHT----------TCCHHHHHHHHHHHHTCCC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE-----cHHHHHHHHHH----------cCCchHHHHHHHHhcCCCC
Confidence 34457889999999999999999999999876554 44443 44321 11221111111
Q ss_pred --HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCC
Q 005630 417 --EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEP 493 (687)
Q Consensus 417 --~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~ 493 (687)
++...++.+-+.-.......+|+|+--.+..+-+.+.+. .... .++ .+.|+ ++++.+|+..|... .+
T Consensus 89 pde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~-~vi--~l~v~-~e~~~~Rl~~R~~~----~~-- 158 (217)
T 3umf_A 89 PLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL-CVI--NFDVS-EEVMRKRLLKRAET----SN-- 158 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS-EEE--EEECC-HHHHHHHHSCC-----------
T ss_pred CHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccC-EEE--eccCC-HHHHHHHHhccccc----CC--
Confidence 122222221111122345678999977776665555544 2222 234 44565 67778888666421 11
Q ss_pred ChHHHHHHHHHHHHhhhhccccC
Q 005630 494 DFEAGLQDFKNRLANYEKVYEPV 516 (687)
Q Consensus 494 d~e~a~~df~~Ri~~y~~~yEPl 516 (687)
..++..+-+.+|++.|.+.-+|+
T Consensus 159 R~DD~~e~i~~Rl~~Y~~~t~pl 181 (217)
T 3umf_A 159 RVDDNEETIVKRFRTFNELTKPV 181 (217)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 22344566789999998877776
No 70
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.74 E-value=2.8e-08 Score=98.45 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=63.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcCC---CCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRA---DNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~~---~~e~~~~~~~~vA~~ 421 (687)
++++|+|+|.|||||||+|+.|+++|++. +++.|++ |+...+.... ..++.. .... ....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~-------~~~~ 70 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAA-----HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD-------IMVN 70 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCce-----EEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHH-------HHHH
Confidence 45789999999999999999999998754 4555444 3322110000 000000 0010 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhh
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~ 483 (687)
.+.+...-....|..+|+|+.......++.+..+ .+.+..+ ++|.+.|+ ++++.+|+..|.
T Consensus 71 ~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r~ 133 (220)
T 1aky_A 71 MIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGRL 133 (220)
T ss_dssp HHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEE
T ss_pred HHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCCC
Confidence 1111111001235578899865566666666554 3333222 33444564 777778887664
No 71
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.72 E-value=1.6e-08 Score=96.89 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=63.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcCC---CCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRA---DNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~~---~~e~~~~~~~~vA~~ 421 (687)
++.+|+|+|.|||||||+|+.|++++++..+++ |++ |+...+.... ..++.. .... .....+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~-----d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~- 73 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLST-----GDILRDHVARGTPLGERVRPIMERGDLVPDD---LILELIR- 73 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECH-----HHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH---HHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecH-----HHHHHHHHHcCChHHHHHHHHHHcCCcCCHH---HHHHHHH-
Confidence 467999999999999999999999987654444 332 3221110000 000000 0000 0011111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHhhh
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~-vvfIE~~c~d~eii~rrI~~r~ 483 (687)
..+. .| +|+|+.......+..+..+ .+.+.. -.+|.+.|+ ++++.+|+..|.
T Consensus 74 ------~~l~-~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~ 127 (186)
T 3cm0_A 74 ------EELA-ER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRA 127 (186)
T ss_dssp ------HHCC-SE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHH
T ss_pred ------HHhc-CC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcc
Confidence 1122 33 8999988887777666655 444432 244555675 777788887664
No 72
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.71 E-value=4.6e-07 Score=88.15 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=64.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCC-----CCcCC--C--CHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA-----DFFRA--D--NPEGMEARNEV 418 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~-----~f~~~--~--~e~~~~~~~~v 418 (687)
.++.+|+++|.|||||||+|+.|++.++. .+++.|++ |+.....+... .++.. . .+.....+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~- 86 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRN- 86 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHH-
Confidence 35679999999999999999999998654 34555544 33211101000 00000 0 0111111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 419 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 419 A~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+...+..++..+|+|+.....+....+.......-.++|| .|+ ++++.+|+..|.
T Consensus 87 ------~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l--~~~-~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 87 ------AISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF--DCP-EDIMLERLLERG 142 (203)
T ss_dssp ------HHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEE--ECC-HHHHHHHHHHHH
T ss_pred ------HHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEE--ECC-HHHHHHHHHhcc
Confidence 12223444346889999877776666555442211224444 564 677777776664
No 73
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.70 E-value=1.1e-08 Score=98.18 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=72.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~ 431 (687)
.+|+|+|.|||||||+|+.|+++|++. +++.|++++...|... ..++.+.++..++.... .+++.+ +.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~-~~~~~~~g~~~~~~~~~---~~~~~~---~~ 70 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSI-ADIFATDGEQEFRRIEE---DVVRAA---LA 70 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCH-HHHHHHHCHHHHHHHHH---HHHHHH---HH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCH-HHHHHHhChHHHHHHHH---HHHHHH---Hh
Confidence 369999999999999999999998754 5667776665544221 12232233333333221 112211 22
Q ss_pred cCCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHH-HHHHHh
Q 005630 432 EGGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF-KNRLAN 508 (687)
Q Consensus 432 ~~G~iVIlDAtn--~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df-~~Ri~~ 508 (687)
....||.++.. .....|+.+. .+ .++||. | +++++.+|+..|.. +|.+... +.+..++.+ ..|.+.
T Consensus 71 -~~~~vi~~g~~~v~~~~~~~~l~----~~-~vV~L~--~-~~e~~~~Rl~~r~~-r~~~~~~-~~~~~i~~~~~~r~~~ 139 (184)
T 2iyv_A 71 -DHDGVLSLGGGAVTSPGVRAALA----GH-TVVYLE--I-SAAEGVRRTGGNTV-RPLLAGP-DRAEKYRALMAKRAPL 139 (184)
T ss_dssp -HCCSEEECCTTGGGSHHHHHHHT----TS-CEEEEE--C-CHHHHHHHTTCCCC-CSSTTSC-CHHHHHHHHHHHHHHH
T ss_pred -cCCeEEecCCcEEcCHHHHHHHc----CC-eEEEEe--C-CHHHHHHHHhCCCC-CCCccCC-CHHHHHHHHHHHHHHH
Confidence 23334433321 2233444332 33 355554 5 57788888876532 4555544 455544444 345555
Q ss_pred hh
Q 005630 509 YE 510 (687)
Q Consensus 509 y~ 510 (687)
|.
T Consensus 140 ~~ 141 (184)
T 2iyv_A 140 YR 141 (184)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 74
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.68 E-value=5.6e-09 Score=102.81 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=80.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAME 424 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~L~ 424 (687)
.|+|+|.|||||||+|+.|++.++... ++.|++ |+...+... . .......+. .+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~-----i~~d~~~r~~~~~~~~---~----~~~~~~~~~~g~~~~~~~~~~~~- 68 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPH-----ISTGDMFRAAIKNGTE---L----GLKAKSFMDQGNLVPDEVTIGIV- 68 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCE-----EEHHHHHHHHHHTTCH---H----HHHHHHHHHHTCCCCHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----eeHHHHHHHHHhcCCH---H----HHHHHHHHHCCCCCCHHHHHHHH-
Confidence 588999999999999999999876544 444433 443221100 0 000000000 0111111
Q ss_pred HHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhcc------------CCC
Q 005630 425 DMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ------------SPD 488 (687)
Q Consensus 425 dl~~~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~------------~pd 488 (687)
...+. ..|..+|+|+.....+.+..+.+. .+.+..+ .+|.+.|+ ++++.+|+..|... -|.
T Consensus 69 --~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3fb4_A 69 --HERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPA 145 (216)
T ss_dssp --HHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred --HHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCC
Confidence 11222 237789999987888777777765 4344332 34444565 67888888877210 000
Q ss_pred CCC----------CCChHHHHHHHHHHHHhhhhccccCC
Q 005630 489 YAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 489 ~s~----------~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
..+ . ..+...+.+.+|+..|.+..+|+.
T Consensus 146 ~~~~~~~~~~~l~~-r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3fb4_A 146 VEGICDKDGGELYQ-RIDDKPETVKNRLDVNMKQTQPLL 183 (216)
T ss_dssp STTBCTTTCCBEEC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcccc-CCCCCHHHHHHHHHHHHHhHHHHH
Confidence 000 0 123345667888888887777664
No 75
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.66 E-value=8.9e-09 Score=101.50 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=64.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcCCC---CHHHHHHHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRAD---NPEGMEARNEVAALAME 424 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~~~---~e~~~~~~~~vA~~~L~ 424 (687)
.|+|+|.|||||||+|+.|++.++.. +++.|++ |+...+.... ..++... ... ....+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~l~ 73 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE---VTIGIVKERLG 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHH---HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh
Confidence 58899999999999999999886544 4555444 4322211000 0000000 110 11111111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhh
Q 005630 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLK 482 (687)
Q Consensus 425 dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r 482 (687)
.. ..|..+|+|+.......++.+.+. ...+..+ .+|.+.|+ ++++.+|+..|
T Consensus 74 ----~~-~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R 127 (216)
T 3dl0_A 74 ----KD-DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGR 127 (216)
T ss_dssp ----SG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTE
T ss_pred ----cc-cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCC
Confidence 11 237789999987888777777766 4344332 34455675 57777778776
No 76
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.65 E-value=2.8e-08 Score=98.58 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=63.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCC----CCcCC---CCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRA---DNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~----~f~~~---~~e~~~~~~~~vA~~ 421 (687)
+++.|+|+|.|||||||+|+.|+++|++.. ++.|++ |+...+..... .++.. ...+ ...++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~-----i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~---~~~~~i~~ 75 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAH-----LSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDE---IVLGLVKE 75 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHH---HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceE-----EehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHH---HHHHHHHH
Confidence 346899999999999999999999986544 444443 32221110000 00000 0010 11111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHhhh
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~-~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.+. - ...|..+|+|+...+..+.+.+.++ ...+. .-++|.+.|+ ++++.+|+..|.
T Consensus 76 ~l~----~-~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~ 133 (217)
T 3be4_A 76 KFD----L-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRC 133 (217)
T ss_dssp HHH----T-TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEE
T ss_pred HHh----c-cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence 111 0 1236778899876666666665543 33332 1133444564 778888887764
No 77
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.63 E-value=1.2e-07 Score=107.69 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC-cCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g-i~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~ 427 (687)
.++.+|+|+|++|||||||++.|+..|...+ .....++.+++++.+ .....|........++.+..++..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l---~~~l~f~~~~r~~~~r~i~~v~q~------ 437 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL---SSELGFSKAHRDVNVRRIGFVASE------ 437 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT---TSSCCCSHHHHHHHHHHHHHHHHH------
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh---ccccCCCHHHHHHHHHHHHHHHHH------
Confidence 3568999999999999999999999987543 345568887776532 223334332333333333333333
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~ 480 (687)
+...+.++|.....+....|+.++++ .+.+ .+++|.+.|+ .+++.+|++
T Consensus 438 --l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~-~e~~~~R~~ 487 (552)
T 3cr8_A 438 --ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATP-IETCESRDR 487 (552)
T ss_dssp --HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------
T ss_pred --HHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCC-HHHHHHhcc
Confidence 33468888888777777888888887 5545 5555555564 566666653
No 78
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.61 E-value=2.5e-07 Score=93.82 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=85.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAA 420 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~ 420 (687)
.+|++|+|+|.|||||||+|+.|+++++... ++.|+. |+.... +.. + .......+. ++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~-----is~~~~~r~~~~~-~~~--~----g~~i~~~~~~g~~~~~~~~~ 94 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCH-----LSTGDLLREAAEK-KTE--L----GLKIKNIINEGKLVDDQMVL 94 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHTTS-SSH--H----HHHHHHHHHTTCCCCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----EecHHHHHHHHhc-cch--H----HHHHHHHHhcCCCCcHHHHH
Confidence 3689999999999999999999999876543 444444 332211 000 0 000000000 0111
Q ss_pred HHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhccC----------
Q 005630 421 LAMEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQS---------- 486 (687)
Q Consensus 421 ~~L~dl~~~L~--~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~~---------- 486 (687)
.. +...+. ..+..+|+|+...+..+.+.+.++ ...+..+ .+|.+.|+ ++++.+|+..|....
T Consensus 95 ~~---~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~ 170 (243)
T 3tlx_A 95 SL---VDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIF 170 (243)
T ss_dssp HH---HHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTT
T ss_pred HH---HHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCccccccc
Confidence 11 122222 237789999976777777766665 3333222 33444665 688888888775310
Q ss_pred --------------CCCCCCCChHHHHHHHHHHHHhhhhccccCC
Q 005630 487 --------------PDYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 487 --------------pd~s~~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
+... ..++..+.+.+|+..|.+..+|+.
T Consensus 171 ~pp~~~~~~~~~~~~l~~---r~dd~~e~i~~Rl~~~~~~~~~l~ 212 (243)
T 3tlx_A 171 NPPKVPFRDDVTNEPLIQ---REDDNEDVLKKRLTVFKSETSPLI 212 (243)
T ss_dssp BCCSSTTBCTTTCCBCBC---CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred CCCcccCccccccccccC---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0011 123445678899999988877764
No 79
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.61 E-value=9.3e-08 Score=91.33 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=34.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+|+++|.|||||||+|+.|+++|+..|+....++.|++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 479999999999999999999999988888888877665
No 80
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.61 E-value=1.6e-07 Score=88.24 Aligned_cols=33 Identities=30% Similarity=0.292 Sum_probs=27.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|+++|.|||||||+|+.|++.+++..++.+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 35 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence 799999999999999999999987655444433
No 81
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.58 E-value=6.6e-08 Score=92.42 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=34.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+++|+++|.|||||||+|+.|+++|+..|++..+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 4689999999999999999999999977777778887665
No 82
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.56 E-value=1.2e-07 Score=89.33 Aligned_cols=134 Identities=15% Similarity=0.219 Sum_probs=70.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
.|+++|.|||||||+|+.|+++|++. +++.|++.+...|... ..++...++..++.+.. .++..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~-------~~l~~l~~ 68 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSI-PQIFEKKGEAYFRKLEF-------EVLKDLSE 68 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHSCHHHHHHHHH-------HHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCH-HHHHHHhChHHHHHHHH-------HHHHHHhc
Confidence 69999999999999999999998754 4566666554433110 11222223333332211 11222444
Q ss_pred CCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhh
Q 005630 433 GGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (687)
Q Consensus 433 ~G~iVIlDA--tn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y 509 (687)
.+.+||.|+ .......++.+ .+.+ .++|| .| +++++.+|+..|. .+|.+.+ ..+...+.|.++.+.|
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l---~~~~-~~i~l--~~-~~e~~~~R~~~r~-~r~~~~~--~~~~i~~~~~~~~~~~ 137 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFM---KSRG-TTVFI--DI-PFEVFLERCKDSK-ERPLLKR--PLDEIKNLFEERRKIY 137 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHH---HTTS-EEEEE--EC-CHHHHHHHCBCTT-CCBGGGS--CGGGTHHHHHHHHHHH
T ss_pred cCCeEEECCCCEeCCHHHHHHH---HcCC-EEEEE--EC-CHHHHHHHHhCCC-CCCCCcc--hHHHHHHHHHHHHHHH
Confidence 566777643 22344444433 2222 44555 45 5777777776543 2343321 1344445555555444
No 83
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.51 E-value=1e-07 Score=90.06 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=30.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~ 394 (687)
.+|+++|.|||||||+|+.|+++|++. +++.|++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~ 40 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHT 40 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHH
Confidence 379999999999999999999998754 45566665544
No 84
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.50 E-value=5.8e-08 Score=96.77 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=26.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
++++|+|+|.|||||||+|+.|+++|++..++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 45789999999999999999999987654433
No 85
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.50 E-value=1.2e-06 Score=84.96 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
++++|+++|.|||||||+|+.|+++|+..|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357999999999999999999999998766
No 86
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.47 E-value=2.4e-06 Score=83.24 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=33.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
++++|+++|.|||||||+|+.|+++|+..+++++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 4679999999999999999999999999898887664
No 87
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.46 E-value=2.7e-07 Score=92.10 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=63.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCC----CCCcCC---CCHHHHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRA---DNPEGMEARNEVAALAM 423 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~~---~~e~~~~~~~~vA~~~L 423 (687)
++|+|+|.|||||||+|+.|+++++. .+++.|++ |+...+.... ..+... ... .....++...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~---~~~~~~i~~~l 72 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD---DITIPMVLETL 72 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCH---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcH---HHHHHHHHHHH
Confidence 36999999999999999999999864 34555555 3321110000 000000 001 11122222222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHhhh
Q 005630 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 424 ~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~-~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
. -. . |..+|+|+......+.+.+.++ ...+. .-+.|.+.| +++++.+|+..|.
T Consensus 73 ~----~~-~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 73 E----SK-G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILL-PREVAKNRIMGRR 127 (223)
T ss_dssp H----HH-C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHTBC
T ss_pred h----cc-c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHccc
Confidence 2 01 1 7889999866666666666554 33332 112344456 4778888887764
No 88
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.46 E-value=8.1e-08 Score=91.63 Aligned_cols=133 Identities=16% Similarity=0.273 Sum_probs=71.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~L~~ 432 (687)
.|+++|+|||||||+|+.|++.|++. .++.|++++...|... ..++....+..++..+. .++..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~~~g~~~-~~~~~~~g~~~~~~~~~-------~~~~~l~~ 72 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQKFNQKV-SEIFEQKRENFFREQEQ-------KMADFFSS 72 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHHTSCH-HHHHHHHCHHHHHHHHH-------HHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHHHcCCCH-HHHHHHcCHHHHHHHHH-------HHHHHHHc
Confidence 58999999999999999999998754 4566666654433211 11222223333322211 11222433
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhh-ccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005630 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI-QQSPDYAEEPDFEAGLQDFKNRLANYE 510 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~-~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (687)
....| ++........+. +.+.+ .++||. | +.+++.+|+..+. ..+|+.. +.+...+.|.+|.+.|.
T Consensus 73 ~~~~v-i~~g~~~~~~~~----l~~~~-~~i~l~--~-~~e~~~~R~~~r~~~~r~~~~---~~~~i~~~~~~r~~~y~ 139 (175)
T 1via_A 73 CEKAC-IATGGGFVNVSN----LEKAG-FCIYLK--A-DFEYLKKRLDKDEISKRPLFY---DEIKAKKLYNERLSKYE 139 (175)
T ss_dssp CCSEE-EECCTTGGGSTT----GGGGC-EEEEEE--C-CHHHHTTCCCGGGTTTSCTTC---CHHHHHHHHHHHHHHHH
T ss_pred cCCEE-EECCCCEehhhH----HhcCC-EEEEEe--C-CHHHHHHHHhcccCCCCCCcc---cHHHHHHHHHHHHHHHH
Confidence 34444 443322211122 32323 455554 5 5777777776552 2345443 24556666777777664
No 89
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.45 E-value=1.9e-06 Score=85.87 Aligned_cols=144 Identities=17% Similarity=0.241 Sum_probs=84.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH----------HHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------EVAA 420 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~----------~vA~ 420 (687)
++|+|.|.|||||+|.|+.|+++++... ++.|+. |..... .++.+..... ++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~-----istGdllR~~i~~----------~t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVH-----ISTGDILREAVQK----------GTPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHH----------TCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHHHHHHHHh----------cChhhhhHHHHHhcCCcCCHHHHH
Confidence 4789999999999999999999977654 444544 442211 1111111111 1111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHhhhccCC-----------
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSP----------- 487 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~v-vfIE~~c~d~eii~rrI~~r~~~~p----------- 487 (687)
.++ ...+.. ...+|+|+-..+..+.+.+..+ .+.+.++ .+|++.|+ ++++.+|+..|.....
T Consensus 66 ~lv---~~~l~~-~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~p 140 (206)
T 3sr0_A 66 ALI---EEVFPK-HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNP 140 (206)
T ss_dssp HHH---HHHCCS-SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBC
T ss_pred HHH---HHhhcc-CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccC
Confidence 111 222333 3348999998888888877666 4444433 34455676 5666667777642110
Q ss_pred -----CCCCCCChHHHHHHHHHHHHhhhhccccCC
Q 005630 488 -----DYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 488 -----d~s~~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
... . ..+...+-+.+|++.|++...|+-
T Consensus 141 p~~g~~l~-~-r~DD~~e~i~~Rl~~Y~~~t~pl~ 173 (206)
T 3sr0_A 141 PPPGVKVI-Q-REDDKPEVIKKRLEVYREQTAPLI 173 (206)
T ss_dssp CCTTCCCB-C-CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred CCCCceec-c-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 0 234445667899999998888773
No 90
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.44 E-value=3.5e-06 Score=84.95 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=28.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (687)
++.+|++.|.|||||||+++.|++.|.. +..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 5789999999999999999999999987 6654
No 91
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.44 E-value=1.5e-07 Score=94.34 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=26.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
.++.|+|+|.|||||||+|+.|+++|++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 44 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCH 44 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 457899999999999999999999987543
No 92
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=2.4e-07 Score=95.18 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=73.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhh-CCCCCCCCcCCCCHHHHHHHHH-HHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQSADFFRADNPEGMEARNE-VAALAMEDMIS 428 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~-g~~~~~~f~~~~~e~~~~~~~~-vA~~~L~dl~~ 428 (687)
...|+++|+|||||||+++.|++.|++.. ++.|++.+... +.. ...+|....+..++.++. ++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~-----~d~d~~~~~~~~g~~-i~~i~~~~ge~~fr~~e~~~l~~l~----- 116 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF-----FDCDTLIEQAMKGTS-VAEIFEHFGESVFREKETEALKKLS----- 116 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHHHSTTSC-HHHHHHHHCHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcE-----EeCcHHHHHHhcCcc-HHHHHHHhCcHHHHHHHHHHHHHHH-----
Confidence 34799999999999999999999988754 55555554443 221 122344445555554443 222221
Q ss_pred HHhcCCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhh-hccCCCCCCCCC--------hHH
Q 005630 429 WMHEGGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPD--------FEA 497 (687)
Q Consensus 429 ~L~~~G~iVIlDAt--n~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r-~~~~pd~s~~~d--------~e~ 497 (687)
......||.++. ....+.++.+ . .+ .++||. | +.+++.+|+..+ ...+|...+. + .+.
T Consensus 117 --~~~~~~Via~GgG~v~~~~~~~~l---~-~~-~vV~L~--a-~~e~l~~Rl~~~~~~~Rpl~~~~-~~~d~~~~~~~~ 185 (250)
T 3nwj_A 117 --LMYHQVVVSTGGGAVIRPINWKYM---H-KG-ISIWLD--V-PLEALAHRIAAVGTGSRPLLHDD-ESGDTYTAALNR 185 (250)
T ss_dssp --HHCSSEEEECCGGGGGSHHHHHHH---T-TS-EEEEEE--C-CHHHHHHHHHC-----------------CHHHHHHH
T ss_pred --hhcCCcEEecCCCeecCHHHHHHH---h-CC-cEEEEE--C-CHHHHHHHHhhcCCCCCCcccCC-CcccchhhHHHH
Confidence 121344554432 2223333333 2 23 466765 4 577788888652 2336666542 2 245
Q ss_pred HHHHHHHHHHhhhh
Q 005630 498 GLQDFKNRLANYEK 511 (687)
Q Consensus 498 a~~df~~Ri~~y~~ 511 (687)
..+.+.+|.+.|+.
T Consensus 186 l~~l~~eR~~lY~~ 199 (250)
T 3nwj_A 186 LSTIWDARGEAYTK 199 (250)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 66777788887754
No 93
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.38 E-value=1e-06 Score=90.00 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=63.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC---------------CCCcC-CCCHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS---------------ADFFR-ADNPEGMEAR 415 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~---------------~~f~~-~~~e~~~~~~ 415 (687)
.+|+++|.|||||||+|+.|++.+++..++.|.+. .|+....+.... ..+.+ ..+...+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~--~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ--CCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG--GCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh--ccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence 48999999999999999999999876544444331 012111111100 00111 2333333322
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-Hc----CCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 416 NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AE----GNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 416 ~~vA~~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~~----~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
+..++ + +...|..+|+++.+. ..++.+ .. .++.+.++.+.+++.+++.+|+.+|..
T Consensus 80 ---~~~~i----~-~~~~g~~vIl~gg~~-----~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 80 ---LIFEV----D-WRKSEEGLILEGGSI-----SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp ---HHHHH----H-TTTTSSEEEEEECCH-----HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ---HHHHH----H-HHhCCCCeEEeccHH-----HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 22211 1 223577777765442 133333 33 456665665566665888888888764
No 94
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.36 E-value=5.2e-06 Score=79.82 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=64.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCC-CH----HHHHHHHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRAD-NP----EGMEARNEVAALAMEDM 426 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~-~e----~~~~~~~~vA~~~L~dl 426 (687)
.+|+++|.|||||||+++.|+..+. -...++.+++++... .++..+. .. ..++.+...+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~----- 68 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVV-----GGYRPPWESDELLALTWKNITDLTVN----- 68 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCC-----TTCCCGGGCHHHHHHHHHHHHHHHHH-----
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC----CeEEEcccchhhhhc-----cccccCccchhHHHHHHHHHHHHHHH-----
Confidence 5899999999999999999987432 124566766654221 1121111 11 112222222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-H--cCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-A--EGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 427 ~~~L~~~G~iVIlDAtn~~~e~R~~l~el-~--~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
+...|..+|+|.+. ....++.++++ . ..+.++.++.+.| +.+++.+|++.|.
T Consensus 69 ---~~~~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~-~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 69 ---FLLAQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDALRK 123 (189)
T ss_dssp ---HHHTTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTTSC
T ss_pred ---HHhcCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeC-CHHHHHHHHHhcc
Confidence 22357788999864 45555555555 2 2233555555555 5778888887653
No 95
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.33 E-value=4.7e-07 Score=85.55 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=30.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH 395 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~ 395 (687)
-.|+++|.|||||||+|+.|+++|++.. ++.|++.+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~-----id~D~~~~~~~ 46 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV-----LDTDMIISERV 46 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE-----EEHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHHHh
Confidence 3799999999999999999999988654 55555544333
No 96
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.32 E-value=3.7e-07 Score=90.10 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=26.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.|+++|.|||||||+|+.|+++++.. +++.|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHH
Confidence 48999999999999999999987543 4555444
No 97
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.30 E-value=9.6e-07 Score=86.55 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++.+|+++|.|||||||+++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999874
No 98
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.28 E-value=9.1e-07 Score=87.65 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
++++|+++|.|||||||+|+.|+++|++..++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 37 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAG 37 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 4578999999999999999999999887655543
No 99
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.27 E-value=8.6e-07 Score=83.75 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+.+|+++|.|||||||+++.|+..+++ ..++.|++.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHH
Confidence 457999999999999999999998764 4566666644
No 100
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.25 E-value=1.9e-06 Score=82.36 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=25.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
++|+++|.|||||||+|+.|+++|...|+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 379999999999999999999999554543
No 101
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.21 E-value=8.1e-07 Score=99.98 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=53.5
Q ss_pred cccCCCCCccchhhHHHHhhhhcCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cC-cCceEEehhh
Q 005630 322 ETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGK 389 (687)
Q Consensus 322 ~~~~~~p~~~~~~a~a~l~~~~~~~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~g-i~tdv~~~gd 389 (687)
......|++......+.+......+..+.+++|||+|+|||||||||++|+++|++ .| ..+..++.|+
T Consensus 366 r~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 366 RVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35667888888888888887776655667799999999999999999999999997 53 4455665443
No 102
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.20 E-value=1.2e-06 Score=83.75 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
++.+|+++|+|||||||+|+.|++.++.. .++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~ 47 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAR 47 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHh
Confidence 35578999999999999999999997644 455566544
No 103
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.17 E-value=1.5e-05 Score=76.54 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
++|+++|.|||||||+|+.|+++|...|+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37999999999999999999999976666553
No 104
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.16 E-value=1.3e-06 Score=85.14 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
++++|+++|.|||||||+|+.|+++|+..+++++++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999999998887663
No 105
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.11 E-value=8.2e-05 Score=74.38 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=28.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
+++|++.|.+||||||+++.|+++|...|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999998887
No 106
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.08 E-value=0.0002 Score=71.51 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=32.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++++|++.|.+||||||+++.|+++|...|+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467999999999999999999999999888877554
No 107
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.05 E-value=0.00015 Score=73.82 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=31.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcC-ceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~-tdv~ 385 (687)
++++|++.|.+||||||+++.|+++|...+++ +...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 46799999999999999999999999998888 4443
No 108
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.00 E-value=2.6e-05 Score=79.24 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=76.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh-HHHhhCCCCCCCCcCCCCHHHHHHHH----------HH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------EV 418 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~e~~~~~~~----------~v 418 (687)
..+-+-+.|.|||||||+|+.|+++++...+++ |+. |+.... .++.+..... ++
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~-----gdllR~~~~~----------~t~lG~~i~~~~~~G~lvpdei 71 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQIST-----GDMLRAAVKA----------GTPLGVEAKTYMDEGKLVPDSL 71 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECH-----HHHHHHHHHT----------TCHHHHHHHHHHTTTCCCCHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeec-----hHHHHHhccC----------CChHHHHHHHHHhhccccccHH
Confidence 345678899999999999999999987655444 333 442211 0111100000 11
Q ss_pred HHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCce-EEEEEEEeCCHHHHHHHHHhhhccC---------
Q 005630 419 AALAMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCK-IIFLETICNDRDIIERNIRLKIQQS--------- 486 (687)
Q Consensus 419 A~~~L~dl~~~L~~--~G~iVIlDAtn~~~e~R~~l~el~~~~~~-vvfIE~~c~d~eii~rrI~~r~~~~--------- 486 (687)
...++. +.|.. .+...|+|+...+..+-+.+.+ .+.. -.+|.+.|+ ++++.+|+..|....
T Consensus 72 ~~~ll~---~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~---~~~~~d~VI~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~~ 144 (230)
T 3gmt_A 72 IIGLVK---ERLKEADCANGYLFDGFPRTIAQADAMKE---AGVAIDYVLEIDVP-FSEIIERMSGRRTHPASGRTYHVK 144 (230)
T ss_dssp HHHHHH---HHHHSGGGTTCEEEESCCCSHHHHHHHHH---TTCCCSEEEEECCC-HHHHHHHHHTEEEETTTTEEEETT
T ss_pred HHHHHH---HHHhCcccCCCeEecCCCCcHHHHHHHHH---hCCCccEEEEEeCC-HHHHHHHHHcCCcccccCCccccc
Confidence 111111 12221 2345788996556554444432 2211 123444565 677888888775210
Q ss_pred --C-------CCCC----CCChHHHHHHHHHHHHhhhhccccCC
Q 005630 487 --P-------DYAE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (687)
Q Consensus 487 --p-------d~s~----~~d~e~a~~df~~Ri~~y~~~yEPl~ 517 (687)
| |..+ . ..++-.+-+.+|+..|.+.-+|+-
T Consensus 145 ~~pp~~~~~~d~~g~~L~~-R~DD~~e~i~~Rl~~y~~~t~pl~ 187 (230)
T 3gmt_A 145 FNPPKVEGKDDVTGEPLVQ-RDDDKEETVKKRLDVYEAQTKPLI 187 (230)
T ss_dssp TBCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCcCCCccCcccc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 1 234556778999999988777763
No 109
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.99 E-value=2.1e-05 Score=79.65 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=34.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-----CcCceEEehhhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNVGKY 390 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-----gi~tdv~~~gdy 390 (687)
.++++|.++|.|||||||+|+.|++.|++. +..+.+++.|++
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 367899999999999999999999998865 345667777776
No 110
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.99 E-value=4e-05 Score=77.22 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+++|.+.|.+||||||+|+.|+++|++..++.+++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~ 48 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL 48 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence 467999999999999999999999998765555444
No 111
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.97 E-value=5.5e-06 Score=79.91 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH-HhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~-L~~~gi~tdv~~~gdy 390 (687)
++.+|+++|.|||||||+|+.|++. +++. +++.|++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~-----~id~d~~ 45 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQ-----HLEVGKL 45 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEE-----EEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCE-----EeeHHHH
Confidence 3568999999999999999999998 5544 4555554
No 112
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.97 E-value=0.0001 Score=70.46 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=62.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++.+|+++|.|||||||+++.|+.. .+.....++.+++++.... .....|..+.........+. +......
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-----l~~~~~~ 78 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQI-----AADVAGR 78 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHH-----HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHHH-----HHHHHHH
Confidence 4578999999999999999999975 2333446777776553211 11123433322211111111 1111111
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhh
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r 482 (687)
+...|..+++|+.... ..++. +...+..+..+...+ +.+++.+|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~l~~---~~~~~~~~~~ls~~~-~~~v~~~R~~~r 126 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRP-DWLPA---FTALARPLHYIVLRT-TAAEAIERCLDR 126 (191)
T ss_dssp HHHTSCEEEECSCCCT-TTTHH---HHTTCSCEEEEEEEC-CHHHHHHHHHTT
T ss_pred HhccCCeEEEeccCcH-HHHHH---HHhcCCCeEEEEecC-CHHHHHHHHHhc
Confidence 2345778888986432 12222 221122333444455 477777777665
No 113
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.94 E-value=1.9e-05 Score=78.00 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=27.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
+.+|.+.|.+||||||+|+.|+++|++..++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4689999999999999999999998866544
No 114
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.94 E-value=3.1e-05 Score=78.38 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc----CcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL----GHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~----gi~tdv~ 385 (687)
++++|++.|.+||||||+++.|+++|... |+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 56899999999999999999999999887 7776544
No 115
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.92 E-value=4.2e-05 Score=73.50 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+|+++|.|||||||+|+.|+++|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6999999999999999999999875
No 116
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.87 E-value=6.5e-05 Score=72.58 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.+|.++|.+||||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999875
No 117
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.85 E-value=9e-05 Score=76.73 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=29.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.++++|+++|.|||||||+|+.|+ .+++ .+++.|++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~-----~~id~D~~~ 109 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA-----YIIDSDHLG 109 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC-----EEEEHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC-----cEEehhHHH
Confidence 367899999999999999999999 4543 345555553
No 118
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.83 E-value=7.9e-06 Score=79.62 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=27.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
+|+++|.+||||||+++.|+++|...++++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 7999999999999999999999987665543
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.82 E-value=0.0002 Score=68.23 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=66.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~~ 429 (687)
++-++.|+|.+||||||+++.+. ....+++.+.+|...... ....+ .....++.+...+...+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~-------~~~~~~~~d~~~g~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~----- 71 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF-------KPTEVISSDFCRGLMSDD-ENDQT---VTGAAFDVLHYIVSKRLQ----- 71 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS-------CGGGEEEHHHHHHHHCSS-TTCGG---GHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHc-------cCCeEEccHHHHHHhcCc-ccchh---hHHHHHHHHHHHHHHHHh-----
Confidence 45799999999999999999843 123456666666543221 11111 122223333333333333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHhhh
Q 005630 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (687)
Q Consensus 430 L~~~G~iVIlDAtn~~~e~R~~l~el-~~~~~~vvfIE~~c~d~eii~rrI~~r~ 483 (687)
.|..+++|+++.....+++...+ .....+..++-+.. +...+..+.+.|.
T Consensus 72 ---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDE-Pt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 72 ---LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNL-PEKVCQERNKNRT 122 (171)
T ss_dssp ---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHTCS
T ss_pred ---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeC-CHHHHHHHHhccc
Confidence 68899999999998766666566 44444444544444 3455565555543
No 120
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.78 E-value=7.9e-05 Score=73.27 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
++++|+++|.+||||||+++.|++ ++. .+++.|++-+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-----~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGI-----NVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEccHHHH
Confidence 478999999999999999999987 543 3455555533
No 121
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.77 E-value=8.6e-05 Score=79.43 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=29.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.++.+|+++|.+||||||||..|+++|+...+++|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4567999999999999999999999876555555444
No 122
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.77 E-value=0.00015 Score=71.16 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=30.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++..++|.++|.+||||||+|+.|++.++.. +++.|++
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~-----vid~D~~ 46 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAH-----VVNVDRI 46 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCE-----EEECcHH
Confidence 4567899999999999999999999986644 4555555
No 123
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.77 E-value=0.0016 Score=64.52 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=27.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
..|++-|..||||||.++.|+++|. .++++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 5799999999999999999999996 3655544
No 124
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.74 E-value=0.00012 Score=70.38 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
..++.+|.++|.|||||||+|+.|++. + ..+++.|++-
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g-----~~~id~d~~~ 42 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G-----YPVLDLDALA 42 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T-----CCEEEHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C-----CEEEcccHHH
Confidence 346889999999999999999999986 3 3356666653
No 125
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.71 E-value=0.00012 Score=70.67 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=28.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+|.++|.|||||||+|+.|++.|+.. +++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~-----~~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP-----YLSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc-----eeccchHHH
Confidence 89999999999999999999998744 455555554
No 126
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=2.8e-05 Score=76.54 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++.+|+++|.+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998864
No 127
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.67 E-value=0.00013 Score=77.59 Aligned_cols=33 Identities=33% Similarity=0.189 Sum_probs=27.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
+.+|+++|.+||||||+|+.|++.++...++.|
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 468999999999999999999999775544444
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.67 E-value=0.00023 Score=71.55 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=27.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
+|.+|+++|.|||||||+++.|+++++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5679999999999999999999999875543
No 129
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.59 E-value=0.00011 Score=70.90 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+|+++|.+||||||+.+.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998765
No 130
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.57 E-value=0.0012 Score=64.00 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
++|.++|.|||||||+++.|+. ++ ..+++.|++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~~~ 37 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVVAR 37 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHHHH
Confidence 5899999999999999999987 43 33566666543
No 131
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.55 E-value=0.00026 Score=69.40 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.||++|.+|+|||||.++|.+.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 388999999999999999987753
No 132
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.54 E-value=0.00011 Score=74.20 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceE
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKH 384 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv 384 (687)
.++++|++.|++||||||+++.|+++|.. .|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 46789999999999999999999999999 8887766
No 133
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.53 E-value=0.00028 Score=70.57 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=65.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCC----------CCCCcCCC---C-------
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ----------SADFFRAD---N------- 408 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~----------~~~f~~~~---~------- 408 (687)
+.-..|-|+|.+||||||+|+.|++ +++..+ +.|.+-+.....+. ...++.++ +
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vi-----daD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~ 80 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLV-----DTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRAL 80 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEE-----EHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCcEE-----ECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHH
Confidence 3456899999999999999999997 665544 44444433322211 11233222 1
Q ss_pred ----HHHHHHHHHHHHHH-HHHHHHHHhcC-CeEEEEeCCCCCH-HHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHh
Q 005630 409 ----PEGMEARNEVAALA-MEDMISWMHEG-GQVGIFDATNSSR-KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (687)
Q Consensus 409 ----e~~~~~~~~vA~~~-L~dl~~~L~~~-G~iVIlDAtn~~~-e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~ 481 (687)
++..+.++.+..-. .+.+..++... +..||+|+.-+.. .... .+ .+ .+++| .| ++++..+|+..
T Consensus 81 vF~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~---~~--~D-~vi~V--~a-p~e~r~~Rl~~ 151 (210)
T 4i1u_A 81 IFSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWK---AR--CD-RVLVV--DC-PVDTQIARVMQ 151 (210)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHH---HH--CS-EEEEE--EC-CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCcc---cc--CC-eEEEE--EC-CHHHHHHHHHh
Confidence 22223333333322 22344555543 4578999987665 3321 12 12 24444 46 47777778776
Q ss_pred hh
Q 005630 482 KI 483 (687)
Q Consensus 482 r~ 483 (687)
|.
T Consensus 152 Rd 153 (210)
T 4i1u_A 152 RN 153 (210)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 134
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.49 E-value=0.00017 Score=69.94 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=27.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+|.++|.|||||||+++.|++ ++ ..+++.|++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHH
Confidence 689999999999999999998 64 34566666543
No 135
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.45 E-value=0.001 Score=65.10 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=28.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
|++|+++|.|||||||+|+.|++.++.. +++.|++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChH
Confidence 5689999999999999999999987644 4555554
No 136
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=97.44 E-value=0.00026 Score=63.28 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceE-EEEecCCCCCceeeEEEEecCCCCCcee
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWE-LSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~-~~l~~~~~~~~leyKf~i~~~~~~~~~~ 105 (687)
.|.++-|..+ + .=+.+.|-.. +.+|+|++..+++|+...++.|. .+++++. ...||||| . +....
T Consensus 3 ~g~~vtiyY~---~---g~~~vylHyg-~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~-g~~~~~~F--~----dG~~~ 68 (104)
T 2laa_A 3 TGNKVTIYYK---K---GFNSPYIHYR-PAGGSWTAAPGVKMQDAEISGYAKITVDIGS-ASQLEAAF--N----DGNNN 68 (104)
T ss_dssp CCCEEEEEEE---C---SSSSCEEEEE-ETTSCCCSSSCEECEEETTTTEEEEEEECTT-CSCEEEEE--E----CSSSC
T ss_pred CCCEEEEEEc---C---CCCcEEEEEc-CCCCCCCcCCccccccccCCCeEEEEEECCC-CCEEEEEE--e----CCCCc
Confidence 4566666666 2 2334444444 77799999999999999888995 9999986 46899999 2 22357
Q ss_pred eccCCCccccCC
Q 005630 106 VEEGPNRLLTGG 117 (687)
Q Consensus 106 wE~g~NR~l~~~ 117 (687)
||++.||-...+
T Consensus 69 WDNn~g~Nyt~~ 80 (104)
T 2laa_A 69 WDSNNTKNYSFS 80 (104)
T ss_dssp EESTTTSCEEEC
T ss_pred CcCCCCccEEec
Confidence 999999987754
No 137
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.38 E-value=0.00031 Score=67.68 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
++++|+++|.|||||||+++.|+++|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 138
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.38 E-value=0.00065 Score=66.08 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=28.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+.+|.++|.|||||||+|+.|++.+. ...+++.|++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 567999999999999999999998752 2345555555
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.32 E-value=0.00073 Score=74.74 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=38.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
+|.+|+++|++|+||||++..|+.+|...|.++-+++.|.||-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5899999999999999999999999998898888888776643
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.30 E-value=0.00054 Score=65.99 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.+|+++|.|||||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 141
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.30 E-value=0.0047 Score=60.59 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
++|++-|..||||||.++.|+++|...|+++...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999999999998877654
No 142
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.13 E-value=0.0027 Score=63.51 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=62.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh--cCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHH------HH--
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE------VA-- 419 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~------vA-- 419 (687)
...+++++|.+|||||||.+.|...+.. ...... +.. |....+.....+|... +...+..+.. .+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~-~tt---r~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS-HTT---RQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC-EEC---SCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE-ecC---CCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHH
Confidence 3468999999999999999999987641 111111 111 1111110011122111 1222221110 00
Q ss_pred -H----HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhh
Q 005630 420 -A----LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (687)
Q Consensus 420 -~----~~L~dl~~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r 482 (687)
. ...+.+..++ +.|.++|+| .....+..++++...+. .+|+ ...+.+.+++|+..|
T Consensus 90 ~~~~yg~~~~~v~~~l-~~G~illLD---LD~~~~~~i~~~l~~~~-tI~i--~th~~~~l~~Rl~~r 150 (219)
T 1s96_A 90 FGNYYGTSREAIEQVL-ATGVDVFLD---IDWQGAQQIRQKMPHAR-SIFI--LPPSKIELDRRLRGR 150 (219)
T ss_dssp TTEEEEEEHHHHHHHH-TTTCEEEEE---CCHHHHHHHHHHCTTCE-EEEE--ECSSHHHHHHHHHTT
T ss_pred HhccCCCCHHHHHHHH-hcCCeEEEE---ECHHHHHHHHHHccCCE-EEEE--ECCCHHHHHHHHHHc
Confidence 0 0001112223 259999999 78888888888733333 3443 345788888888554
No 143
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.02 E-value=0.0065 Score=60.41 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+++|.++|.|||||+|+|+.|.+.++.. .+.++..++-
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~ 48 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGP 48 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHH
Confidence 57899999999999999999999876543 3445555554
No 144
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.01 E-value=0.00036 Score=72.76 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=34.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
++.+|.++|-+||||||+|+.|++.|+..+++..+++.|+|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 467899999999999999999999998778888888888874
No 145
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.97 E-value=0.0013 Score=64.18 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
..++.+|.++|.+||||||+++.|+..+...+..+.+++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 44678999999999999999999999987777777666666553
No 146
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.92 E-value=0.0027 Score=69.98 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=38.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
.+|.+|+++|++|+||||++..|+.+|...|.++-+++.|.||-
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35889999999999999999999999998898888888776654
No 147
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00037 Score=68.44 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
+.+|+++|.|||||||+|+.|++.+++. .++.|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i~ 40 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAIY 40 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCccee
Confidence 4589999999999999999999987643 34555543
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.84 E-value=0.0046 Score=65.07 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=36.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.++.+|+++|.+|+||||++..|+..+...+.++-+++.|.+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3578999999999999999999999998777777777766554
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.82 E-value=0.001 Score=63.64 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.+|+++|.+|||||||++.|.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998754
No 150
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.70 E-value=0.0063 Score=57.67 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdy 390 (687)
+..++++|-||+||||+++.|+..+. ..|..+..++..++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45789999999999999999999986 55666666666554
No 151
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.67 E-value=0.00057 Score=69.36 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.|++|+++|.|||||||+|+.|++.|++. .++.|.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~ 44 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMY 44 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHH
Confidence 57899999999999999999999998754 35555543
No 152
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.66 E-value=0.0026 Score=68.10 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+.+|+++|.+||||||+|+.|++.++.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 469999999999999999999999764
No 153
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.64 E-value=0.0064 Score=60.82 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
++++|++.|.+||||||+++.|+++|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4679999999999999999999999876
No 154
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.59 E-value=0.0077 Score=67.67 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=36.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.++.+|+++|.||+||||++.+|+.+|...|.++-+++.|-||
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4578999999999999999999999998888888888776554
No 155
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.55 E-value=0.0057 Score=67.39 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=38.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~gdyR 391 (687)
.+|.+|+++|.+|+||||++..|+.+|... |.++-+++.|-+|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 357899999999999999999999999988 9999999888654
No 156
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.46 E-value=0.012 Score=62.17 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=36.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.++.+|.++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 3578999999999999999999999998878777777665443
No 157
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.41 E-value=0.0048 Score=65.30 Aligned_cols=29 Identities=38% Similarity=0.327 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.+|+++|.+||||||||..|++.++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~ 37 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVE 37 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCc
Confidence 46799999999999999999999986543
No 158
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.40 E-value=0.0064 Score=63.01 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.6
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
...|..|+|+|.||+|||++|++|++.+ +.....++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHh
Confidence 3467788999999999999999999997 455556665544
No 159
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.38 E-value=0.0078 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=16.5
Q ss_pred cEEEEEEccCCCChHHHHHHHH-HHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLT-RYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~La-r~L 375 (687)
+.+|.++|.+||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999 765
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.36 E-value=0.0053 Score=59.94 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
..++.+|.++|.+||||||+++.|+..+...|...-.+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 34678999999999999999999999987434333344443
No 161
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.36 E-value=0.0011 Score=67.34 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
.+.+|.++|.+||||||+++.|+++|+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 356899999999999999999999987654
No 162
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0013 Score=65.72 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=30.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr 392 (687)
++.+|.++|.|||||||+++.|++.|+.. .++.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~ 52 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR 52 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence 45689999999999999999999987654 455555543
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.016 Score=54.96 Aligned_cols=28 Identities=36% Similarity=0.374 Sum_probs=24.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcC
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (687)
++++|-||+|||++++.+++.+...+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 8999999999999999999988654433
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.31 E-value=0.04 Score=56.36 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=26.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
.+.-|+|+|-||+|||++|+++++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3446899999999999999999999976554
No 165
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.29 E-value=0.0048 Score=65.45 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
+.+|+++|.+||||||||..|++.++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccc
Confidence 5689999999999999999999987643
No 166
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.27 E-value=0.0041 Score=64.88 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.9
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcC--cCceEE-ehhhh
Q 005630 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHF-NVGKY 390 (687)
Q Consensus 347 ~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g--i~tdv~-~~gdy 390 (687)
...++.+|.++|.+||||||+|+.|++.+...+ .++.++ ..|+|
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 345789999999999999999999999997543 334444 55554
No 167
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.25 E-value=0.016 Score=63.71 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=36.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
++.+|+++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 577899999999999999999999998888888888776554
No 168
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.23 E-value=0.018 Score=60.57 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.+..++++|.||+||||+|+.+++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34589999999999999999999988543
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.22 E-value=0.013 Score=54.24 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+..++++|-||+|||++|+.+++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999865
No 170
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.16 E-value=0.0067 Score=59.97 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++.+|+++|.+|+|||||.++|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998754
No 171
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0024 Score=63.78 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+|++|++.|.+||||||+++.|+++|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999999999974
No 172
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.05 E-value=0.017 Score=60.32 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=35.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+.+|+++|.+|+||||++..|+..+...+.++-+++.|-+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 7789999999999999999999999888888888877644
No 173
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.92 E-value=0.01 Score=64.80 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=25.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
+.+|+++|.+||||||||..|++.++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 46899999999999999999999987543
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.87 E-value=0.034 Score=59.30 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=62.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHH----Hh----hCCCCCCCCcCCCCHHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR----LK----HGVNQSADFFRADNPEGMEARNEVAAL 421 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr----~~----~g~~~~~~f~~~~~e~~~~~~~~vA~~ 421 (687)
..-+|++.|-||+||||+|..++..+...+..+-+|+...-.. ++ .+.....-....-+......+...+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~- 123 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFD- 123 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHH-
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHH-
Confidence 3459999999999999999999988776676666665432111 11 01100000000112222222222111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEEE
Q 005630 422 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLETI 468 (687)
Q Consensus 422 ~L~dl~~~L~~~G~iVIlDAtn~~~e-~R~~l~el-~~~-~~~vvfIE~~ 468 (687)
.+.+ ..+.|.|..+.+.. -|..++.+ .++ ++.+++|+..
T Consensus 124 -------~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 124 -------HLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp -------HHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred -------HHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEech
Confidence 2222 46777777666654 57778777 566 7899999854
No 175
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.87 E-value=0.0017 Score=65.92 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=24.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.++++|++.|.+||||||+|+.|+++|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3678999999999999999999999873
No 176
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.86 E-value=0.0064 Score=58.69 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
..+|+++|.+||||||++.+|.+.|...|.++-++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 348999999999999999999999988888877773
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.83 E-value=0.038 Score=57.32 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
..++++|-||+||||+|+.++..+...+.+...++..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 358899999999999999999998665666666665444
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.81 E-value=0.0081 Score=58.42 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=33.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+..|+++|-||+||||+|+.+++.+...+.....++..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4478899999999999999999999877777777766554
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.75 E-value=0.021 Score=64.07 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=33.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.++.+|.|+|.+||||||+.+.|+..+...+-+..+...+.+|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 3678999999999999999999999987665555554444443
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.73 E-value=0.043 Score=58.18 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=33.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.++.+|.|+|.+||||||+.+.|+..+...+.+..+...|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4688999999999999999999999988766666555444
No 181
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.70 E-value=0.011 Score=62.63 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=34.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhh--cCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~gdy 390 (687)
..+|++|.++|.+||||||+++.|+..+.. .+..+.++..|.|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 567899999999999999999999998863 2344556666654
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.67 E-value=0.037 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+++|-||+|||++|++|++.++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44688999999999999999999864
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.65 E-value=0.08 Score=58.10 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~gd 389 (687)
+--++++|-||+||||+|++++..+... +.....++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 3468899999999999999999998654 45555555433
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.65 E-value=0.034 Score=58.13 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+..++++|.||+||||+++.+++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4457899999999999999999998854
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.61 E-value=0.024 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+..|+++|-||+||||+|+.+++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999864
No 186
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.60 E-value=0.011 Score=59.01 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=34.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.++.+++++|.+|+||||++..|+..|. .+.++-+++.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 3678999999999999999999999999 88888888654
No 187
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.57 E-value=0.0083 Score=58.17 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++.+|.++|.+||||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999999999876
No 188
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.56 E-value=0.0045 Score=68.17 Aligned_cols=42 Identities=40% Similarity=0.608 Sum_probs=36.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
.|.+|+++|.||+||||++..|+.++...|.++-+++.|-+|
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 467899999999999999999999998888888888777654
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.54 E-value=0.082 Score=55.10 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+.-|+|+|-||+|||++|+++++.++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 3557999999999999999999998653
No 190
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.48 E-value=0.013 Score=59.55 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=27.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.-|+|+|-||+|||++|+.|++.++ .....++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~---~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEcchh
Confidence 44678999999999999999999874 3444454433
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.47 E-value=0.012 Score=56.48 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
..|+++|-||+||||+|++|+..+...+.....++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 578899999999999999999999877777766666544
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.063 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.-|+|+|-||+|||++|+++++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4578899999999999999999986
No 193
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.41 E-value=0.061 Score=55.96 Aligned_cols=41 Identities=34% Similarity=0.337 Sum_probs=34.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
++.+|.++|.+|+||||++..|+..+...+.++-+.+.|-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 46788889999999999999999999877777777765543
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.34 E-value=0.064 Score=57.51 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..++++.|-||+||||+|..|+..+...+..+-.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4589999999999999999999888766767766765
No 195
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.34 E-value=0.018 Score=60.16 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=31.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh--hcCcCceEEehhhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKY 390 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~gdy 390 (687)
.++.+|.++|.+||||||+++.|+..+. -..-...+++.|++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4678999999999999999999999876 22334445554443
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.32 E-value=0.045 Score=52.77 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=26.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..+++++|-||+||||+++.|+. ..+..+-.++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 45899999999999999999997 23444444543
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.26 E-value=0.069 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+|+|-||+|||++|++|+..++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34588899999999999999999875
No 198
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.22 E-value=0.048 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+|+|-||+|||++|++|++.++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34588999999999999999998864
No 199
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.21 E-value=0.046 Score=58.11 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+.++++.|.||+||||+|.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346789999999999999999976
No 200
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.14 Score=54.09 Aligned_cols=29 Identities=7% Similarity=-0.083 Sum_probs=25.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
..+..|+++|.||+|||++++.+++.|..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35668899999999999999999999964
No 201
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.21 E-value=0.011 Score=61.59 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=35.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhhhH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR 391 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gdyR 391 (687)
++.+|+++|.+|+||||++..|+..+.. .|.++-+++.|.+|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4668999999999999999999999975 68777777766553
No 202
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.20 E-value=0.019 Score=61.03 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-|+|+|.||+|||++|+.|++.++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999999864
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.20 E-value=0.2 Score=54.85 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=62.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhh----hH-HHh---hCCCCCCCCcCCCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YR-RLK---HGVNQSADFFRADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gd----yR-r~~---~g~~~~~~f~~~~~e~~~~~~~~vA~ 420 (687)
..-+++++|-||+|||++|..++..... .+.++-.|+... .. |.. .+.....-....-+...+..+...+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999988765 366666665532 11 211 12222111111123333333222222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEE
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLET 467 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~~~~vvfIE~ 467 (687)
.+. ...+.|.|....+. +-+..++.+ .++++.+++|+.
T Consensus 279 --------~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 279 --------RLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --------HHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 222 34567767655554 457777777 567899999973
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.04 Score=60.74 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.=|+|.|.||+|||++|+++|..+++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 35679999999999999999999986643
No 205
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.055 Score=55.32 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999753
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.03 E-value=0.046 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+|+|-||+||||+|++|++.++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999864
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.038 Score=60.39 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
|.=|+|.|.||+|||.+|+++|..++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 4458999999999999999999986654
No 208
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.99 E-value=0.019 Score=53.69 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=28.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
-.++++|-+|+||||+++.|+..+...|.+...++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 368889999999999999999998765655555543
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.93 E-value=0.017 Score=60.67 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=31.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
++.+|.++|.+||||||+++.|+..+...+-++.+...|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 466999999999999999999999987655555444433
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.92 E-value=0.023 Score=60.50 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.+..+|+++|.||+||||++..|+..+...|.++-+++.|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3567899999999999999999999998778887777664
No 211
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.92 E-value=0.17 Score=52.83 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..-+++++|-||+||||+|..++......+.++-.|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45699999999999999999999877655645555543
No 212
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.87 E-value=0.02 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.+.+|.++|-+||||||+++.|+..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46799999999999999999999988654
No 213
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.83 E-value=0.021 Score=59.87 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
.+.+|.|+|..||||||+.+.|+..+...+-+..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5789999999999999999999999876554544443
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.046 Score=60.32 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.=|+|+|.||+|||++|++||..++..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35579999999999999999999986643
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.69 E-value=0.02 Score=61.52 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
....|+|+|.||+||||+++.|++.|++..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345688999999999999999999988643
No 216
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.68 E-value=0.1 Score=55.58 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..++++.|-||+||||+|..++..+...+..+-.++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4589999999999999999999887666656555554
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.051 Score=59.82 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.=|+|.|.||+|||.+|++||..++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 34569999999999999999999986653
No 218
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.66 E-value=0.023 Score=61.07 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=31.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.++.+|.|+|..||||||+++.|+..+...+-+..+...|
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 3678999999999999999999999987655555444333
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.046 Score=60.71 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.=|+|+|.||+|||++|++||..++..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 45578999999999999999999987653
No 220
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.64 E-value=0.094 Score=54.56 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=29.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc---CcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL---GHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~---gi~tdv~~~ 387 (687)
.+..++++|.||+||||+++.+++.+... +.....++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 44578999999999999999999988544 444444543
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.055 Score=59.53 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.|.=|+|+|.||+|||++|+++|..++..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35569999999999999999999987643
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.62 E-value=0.03 Score=54.01 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=28.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+|+++|.+||||||+.+.|...+...+.++-++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 4789999999999999999999987777665555
No 223
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.56 E-value=0.062 Score=59.26 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-++|+|-||+||||+|+.|++.+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 689999999999999999999864
No 224
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.53 E-value=0.1 Score=53.91 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.|-++++.|-||+|||++|++|++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 445788999999999999999998863
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.53 E-value=0.19 Score=53.89 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..-++.+.|-||+||||++..++..+...+..+-.++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45689999999999999999999988766655545544
No 226
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.44 E-value=0.11 Score=54.34 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=26.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEe
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 386 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~ 386 (687)
.++++|.||+||||+++.+++.+... +.....++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999998654 33333343
No 227
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.43 E-value=0.23 Score=53.41 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
..+|++.|-||+||||+|..|+..+...+..+-.++.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34778899999999999999998876666666666543
No 228
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.38 E-value=0.058 Score=60.49 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=66.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
..+++|||-|+-||||++..+.|...|.-.|+++..+..-.++... ..|+ .... .
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~------~~yl-----------~R~~--------~ 95 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE------RPPQ-----------WRFW--------R 95 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT------SCTT-----------HHHH--------H
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc------CChh-----------hhHH--------H
Confidence 4689999999999999999999999998888877666332222211 1121 1111 1
Q ss_pred HHhcCCeEEEEeCCCC------------CHH-HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 429 WMHEGGQVGIFDATNS------------SRK-RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~------------~~e-~R~~l~e---l----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.+=..|.++|+|-... ..+ ..+.+.. + ...|+.++-+-+.++ ++.-++|+..|..
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is-~eeq~kRl~~R~~ 170 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLS-KKQLKERLKALEK 170 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHCC-----
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECC-HHHHHHHHHHHhc
Confidence 1334699999996632 222 1112222 1 456777766666664 7888888887754
No 229
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.36 E-value=0.13 Score=54.05 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=32.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
.+++|+|-|.-||||+|..+.|...|.-.|+++..+
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 589999999999999999999999998888776665
No 230
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.35 E-value=0.023 Score=56.97 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-|+++|.||+||||+|++|+..++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998864
No 231
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.31 E-value=0.083 Score=58.36 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+.-|+|+|.||+||||+|++|++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345899999999999999999998754
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.31 E-value=0.091 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+|+|-||+|||++|++|++.++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999998854
No 233
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.29 E-value=0.12 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+.-|+|+|-||+|||++|++|++.++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 345789999999999999999998854
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.22 E-value=0.041 Score=56.24 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=28.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..++|+|-||+||||+|+.|++.+...+.....++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 478999999999999999999998655444444544
No 235
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.13 E-value=0.037 Score=53.53 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
..+++++|-||+||||++..++..+...+.++-++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35899999999999999988887776666655554
No 236
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.11 E-value=0.064 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
++++|.||+||||+|+.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999753
No 237
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.11 E-value=0.053 Score=54.79 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=35.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
.+++-|++.|-||+||||+|-.++..+...|.++.+.+.|.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35678999999999999999999999998899888777753
No 238
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.04 E-value=0.47 Score=52.19 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
+.-++++.|-||+||||+|..++......|.++-.|+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 45699999999999999999999887666666666654
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.95 E-value=0.035 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.223 Sum_probs=24.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.+++++|.||+||||+++.+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 488999999999999999999988653
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.89 E-value=0.049 Score=56.96 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~gdy 390 (687)
+.-|+|+|-||+|||++|++|+..+. ..+.++..++..++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 34688999999999999999999998 88888777766554
No 241
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.88 E-value=0.04 Score=57.93 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=26.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.++.+|.++|.+||||||+++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 46789999999999999999999998863
No 242
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.82 E-value=0.23 Score=54.47 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=58.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCcCceEEehhh----hHHHh----hCCCCCCCCcCCCCHHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLK----HGVNQSADFFRADNPEGMEARNEVAA 420 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~gd----yRr~~----~g~~~~~~f~~~~~e~~~~~~~~vA~ 420 (687)
+.-++++.|-||+||||++..|+..+.. .|..+-+++... ..++. .+.....-....-.......+.+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a-- 279 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA-- 279 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH--
Confidence 3458999999999999999999988765 366666665421 11111 111110000000122222211111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005630 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (687)
Q Consensus 421 ~~L~dl~~~L~~~G~iVIlDAtn~~~-e~R~~l~el-~~~~~~vvfIE 466 (687)
...+. .....|.|....+. +.+..++.+ .+.++.+++|+
T Consensus 280 ------~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 280 ------MGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVID 320 (454)
T ss_dssp ------HHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred ------HHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 11222 24566666544454 456677777 56788888887
No 243
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=93.80 E-value=0.11 Score=54.14 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=68.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
..++||+|-|+-|+||.++.+.|...|.-.|+++..+..-..+... ..| +.....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~------~~y-------------------lwR~~~ 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS------HDF-------------------LWRIEK 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT------SCT-------------------THHHHT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc------CCH-------------------HHHHHH
Confidence 3689999999999999999999999998888777666321111100 011 110111
Q ss_pred HHhcCCeEEEEeCCCCCH-------------HHHHH---HHHH----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 429 WMHEGGQVGIFDATNSSR-------------KRRNM---LMKM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~-------------e~R~~---l~el----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
.|=..|.++|+|-....+ +..+. +..+ ...|+.++-+-+.++ .+.-++|+..|..
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIs-keEQ~kR~~~R~~ 202 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNIS-KDEQKKRLIARLD 202 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECC-HHHHHHHHHHHhc
Confidence 123469999998765432 11122 2222 456776655555664 7777888888765
No 244
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.76 E-value=0.047 Score=55.19 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
..+.-|+++|-||+|||++|+++++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3566899999999999999999999854
No 245
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.75 E-value=0.14 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
..+++++|-||+||||+|..|+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4589999999999999999999764
No 246
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.67 E-value=0.035 Score=51.04 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
|++.|-||+|||++|+.|+......+....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 789999999999999999987544343333
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.65 E-value=0.059 Score=52.06 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=28.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
.-+++++|-||+||||+++.|+..+...+..+..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3588899999999999999999777655555555543
No 248
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.56 E-value=0.045 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.+++++++|.||||||++|..+...+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35689999999999999998876554
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.55 E-value=0.032 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.+|+++|.+|||||||.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34789999999999999999998764
No 250
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=93.54 E-value=0.13 Score=53.95 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=47.6
Q ss_pred EEEeccCCcccccCC---Cc------CCCCCCCHHHHHHHHHHHHHHHHHhccC-------CCCEEEecCcHHHHHhhhc
Q 005630 562 ILLTRHGESRDNVRG---RI------GGDTILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASP 625 (687)
Q Consensus 562 I~LVRHGeS~~n~~~---~~------~gD~pLSe~G~~qA~~La~~L~~~l~~~-------~~~~V~tSpl~Ra~qTA~~ 625 (687)
.+|.|||...-.... .+ .+.-.||+.|.+|...+|++|+++.... ..-.|+++...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 467899998542210 00 1134799999999999999999885432 1235899999999999998
Q ss_pred c
Q 005630 626 I 626 (687)
Q Consensus 626 i 626 (687)
+
T Consensus 87 f 87 (354)
T 1nd6_A 87 N 87 (354)
T ss_dssp H
T ss_pred H
Confidence 8
No 251
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.49 E-value=0.033 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+..|+|+|-||+|||++|++|+..++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 252
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=93.45 E-value=0.12 Score=45.17 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=42.2
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEE
Q 005630 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (687)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i 95 (687)
..-|+| +-+| ....+.|+|+=. +|+ +++|.+.. +.|++.+.+++ +..+|||+|
T Consensus 10 ~~~v~F-~wap---~a~~V~v~GdFn---~W~---~~~m~~~~-g~w~~~v~l~~--G~~~YKf~V 62 (96)
T 1z0n_A 10 ARPTVF-RWTG---GGKEVYLSGSFN---NWS---KLPMTRSQ-NNFVAILDLPE--GEHQYKFFV 62 (96)
T ss_dssp CEEEEE-EECS---CCSCEEEEEGGG---TTC---CEECEEET-TEEEEEEEECS--EEEEEEEEE
T ss_pred ceEEEE-EECC---CCcEEEEEEEeC---CCc---cccCEECC-CEEEEEEEccC--CCEEEEEEE
Confidence 356788 7777 367899999876 898 68999864 89999998765 346999998
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.43 E-value=0.075 Score=53.33 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
.+..+++++|-||+||||++..++.++...|.++.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35679999999999999999999999888888887774
No 254
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.43 E-value=0.02 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
-|+++|.+|+||||+..+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.40 E-value=0.045 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+.++|-+||||||+.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 256
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.39 E-value=0.024 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
|+|+|-||+|||++|++|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998754
No 257
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.39 E-value=0.3 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.009 Sum_probs=22.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..-+++++|-||+||||+|..|+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999976
No 258
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.33 E-value=0.076 Score=51.36 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+...|+++|.+|+||||+..+|...+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999988643
No 259
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.32 E-value=0.41 Score=53.08 Aligned_cols=39 Identities=5% Similarity=-0.161 Sum_probs=31.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~g 388 (687)
..-++++.|-||+||||+|..++..+... +.++-.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45689999999999999999999887655 6667666553
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.30 E-value=0.031 Score=59.18 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+|+|-||+|||++|++|++.++
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44688999999999999999999864
No 261
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.28 E-value=0.2 Score=47.63 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=32.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.+.++.+-.|+||||+|..|+..|...|.++-+++.|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4455558899999999999999999999999999876
No 262
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.28 E-value=0.14 Score=57.10 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-|+|+|.||+||||+|++|+..++
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998864
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.28 E-value=0.23 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..-++.++|-||+|||||+..|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3458999999999999999988744
No 264
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.27 E-value=0.039 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+|+|.||+||||+++.|+..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 89999999999999999998754
No 265
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.24 E-value=0.032 Score=55.49 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
....|+++|-+|+||||+|.+|++++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356799999999999999999998855
No 266
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.23 E-value=0.11 Score=58.33 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=70.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~L~dl~~ 428 (687)
..+++|||-|.-||||++..+.|...|.-.|+++..+..-.++... ..|+ .... .
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~------~~yl-----------~R~~--------~ 352 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA------QPYL-----------WRFW--------R 352 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT------SCTT-----------HHHH--------T
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc------chHH-----------HHHH--------H
Confidence 4789999999999999999999999998888877666332222211 1121 0011 1
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 429 WMHEGGQVGIFDATNSSR------------K-RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 429 ~L~~~G~iVIlDAtn~~~------------e-~R~~l~e---l----~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
-+=..|.++|+|-..... + ..+.+.+ + ...|+.++-+-+.++ ++.-++|+..|..
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is-~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAID-KQTQMERFKEREK 427 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECC-HHHHHHHHHHHhc
Confidence 122469999999775432 2 1212222 2 456776666665664 7888888988765
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.21 E-value=0.04 Score=55.01 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+++|-||+||||+++.|+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998754
No 268
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.15 E-value=0.052 Score=54.55 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=27.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
-|+++|-||+|||++|+.|++.+...+.....++..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 477899999999999999998876544455555543
No 269
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.07 E-value=0.1 Score=51.00 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=32.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+..+++++|-|||||||.+-.++.++...+.++-++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4579999999999999999999999887888888874
No 270
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.99 E-value=0.11 Score=54.35 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=35.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.++++.|-.|+||||+|..||..|...|.++-+++.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 689999999999999999999999999999999988764
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.95 E-value=0.085 Score=51.64 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
.-+++++|-||+||||+|..++..+...+..+-.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4589999999999999999998876555555555544
No 272
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.88 E-value=0.24 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.++-|+++|.+|+||||+..+|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999988874
No 273
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.84 E-value=0.051 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++|.++|.+||||||+|+.|.+.++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g 26 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998744
No 274
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.82 E-value=0.11 Score=55.16 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
....+|.++|.||+||||+-.+|...+...+.+.-++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 34679999999999999999999988766555555553
No 275
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.80 E-value=0.1 Score=55.38 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=37.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
..+.++++.|-.|.||||+|..||..|...|.++-+++.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45778999999999999999999999999999999998765
No 276
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.79 E-value=0.053 Score=59.94 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-++|+|-||+|||++|+.|++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999854
No 277
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.76 E-value=0.1 Score=55.25 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=32.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
.+..+|.++|.||+||||+...|+..+...+.++-+++.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 356788999999999999999999988777766666654
No 278
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.75 E-value=0.058 Score=56.71 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
-.++|+|.||+||||+|+.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999999999999874
No 279
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.75 E-value=0.78 Score=48.34 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.0
Q ss_pred ccEEEEE--EccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVL--VGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvL--vGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+-++++ +|.||+||||+++.+++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3557777 999999999999999998764
No 280
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.71 E-value=0.054 Score=51.96 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+|.++|.+|||||||++.|.+.+...+++.-.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 789999999999999999999988665544333
No 281
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.59 E-value=0.27 Score=48.01 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=25.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~ 385 (687)
..-+++++|-||+|||++|..++.... ..+..+-.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 345899999999999999999876532 234444444
No 282
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.53 E-value=0.086 Score=62.36 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (687)
..|.=|+|+|.||+|||++|++++..++ .....++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEh
Confidence 3566799999999999999999998754 34444444
No 283
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.51 E-value=0.25 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
...-|+++|.+|+||||+..+|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999998874
No 284
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.48 E-value=0.058 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+|+|-||+||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 285
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.44 E-value=0.062 Score=56.35 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+..++|+|-||+|||++|+++++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999863
No 286
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.36 E-value=0.055 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.++.+|.+.|..||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999875
No 287
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.33 E-value=0.065 Score=58.91 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+.-|+|+|.||+|||++|++|++.++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 345889999999999999999999763
No 288
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.23 E-value=0.12 Score=50.74 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=25.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCcCceEEe
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFN 386 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~ 386 (687)
.-++.++|.+||||||+++.|+.... ..+-....++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45889999999999999999985433 3333444443
No 289
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.13 E-value=0.06 Score=53.82 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+-.|++.|.||+||||+|.+|++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999874
No 290
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.13 E-value=0.12 Score=54.46 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=36.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+.++++.|-.|.||||+|..|+..|...|.++-+++.|-.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35688899999999999999999999999999999987643
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.12 E-value=0.12 Score=50.24 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=25.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCce
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (687)
+|.++|.+|+||||+.+.|+..+...|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~ 33 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEc
Confidence 5889999999999999999998864454433
No 292
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.06 E-value=0.059 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-|+++|-||+|||++|+.+++.++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988543
No 293
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.97 E-value=0.073 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-++.++|-+||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.96 E-value=0.06 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.++.++|.+|||||||.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999865
No 295
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.92 E-value=0.085 Score=57.98 Aligned_cols=38 Identities=0% Similarity=-0.027 Sum_probs=25.3
Q ss_pred CCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeC
Q 005630 433 GGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICN 470 (687)
Q Consensus 433 ~G~iVIlDAtn~~-~e~R~~l~el~~~~~~vvfIE~~c~ 470 (687)
.+-+.++|+.... ....+.+..+.+.+.+++++--.|+
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence 4788899998754 4444444445667788887776675
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.90 E-value=0.11 Score=50.25 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+...|+++|.+|+||||+..+|...+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456888899999999999999998764
No 297
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.81 E-value=0.098 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
..-++.++|-+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999754
No 298
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=91.79 E-value=0.41 Score=52.03 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=47.9
Q ss_pred EEEeccCCccc-cc--------C-C---Cc-CCCCCCCHHHHHHHHHHHHHHHHHhc--c-------C--CCCEEEecCc
Q 005630 562 ILLTRHGESRD-NV--------R-G---RI-GGDTILSDAGEIYAKKLANFVEKRLK--S-------E--RAASIWTSTL 616 (687)
Q Consensus 562 I~LVRHGeS~~-n~--------~-~---~~-~gD~pLSe~G~~qA~~La~~L~~~l~--~-------~--~~~~V~tSpl 616 (687)
++|.|||...- .. . . .+ .+.-.||+.|.+|...+|++|+++.. + . ..-.|+++..
T Consensus 11 ~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~~ 90 (398)
T 3ntl_A 11 LIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANSL 90 (398)
T ss_dssp EEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECSS
T ss_pred EEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECCc
Confidence 56789998643 11 0 0 01 23567999999999999999998872 1 1 2346899999
Q ss_pred HHHHHhhhcc
Q 005630 617 QRTILTASPI 626 (687)
Q Consensus 617 ~Ra~qTA~~i 626 (687)
.||++||+.+
T Consensus 91 ~Rt~~SA~~f 100 (398)
T 3ntl_A 91 QRTVATAQFF 100 (398)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999999998
No 299
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.76 E-value=0.14 Score=52.29 Aligned_cols=36 Identities=11% Similarity=-0.041 Sum_probs=28.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEe
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 386 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~ 386 (687)
.-+++++|-||+||||+++.|+..+... |..+..++
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4589999999999999999999887654 54554444
No 300
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.75 E-value=0.094 Score=54.34 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
++++|.||+||||+|+.|++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 889999999999999999999863
No 301
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.68 E-value=0.16 Score=52.32 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+..+|.++|-.|+||||+|..|+..|...|.++-++|.|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445666669999999999999999999999999999876
No 302
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.56 E-value=0.37 Score=56.09 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=27.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
-++|+|-||+|||++|+.|++.++ .....++..+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhh
Confidence 689999999999999999999974 44445555544
No 303
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.48 E-value=0.27 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.-|+|+|-||+|||++|++|+..++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 44588999999999999999998853
No 304
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.47 E-value=0.15 Score=54.07 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=34.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+.++++.|-.|+||||+|..||..|...|.++-+++.|
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56888999999999999999999999999999999886
No 305
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.47 E-value=0.15 Score=47.61 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++.-|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999975
No 306
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.32 E-value=0.11 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=23.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+.+|+++|.||+||||+++.|+..+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345899999999999999999998764
No 307
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=91.31 E-value=0.3 Score=52.89 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=47.3
Q ss_pred EEEeccCCcccccCC------------Cc-CCCCCCCHHHHHHHHHHHHHHHHHhcc---C--------CCCEEEecCcH
Q 005630 562 ILLTRHGESRDNVRG------------RI-GGDTILSDAGEIYAKKLANFVEKRLKS---E--------RAASIWTSTLQ 617 (687)
Q Consensus 562 I~LVRHGeS~~n~~~------------~~-~gD~pLSe~G~~qA~~La~~L~~~l~~---~--------~~~~V~tSpl~ 617 (687)
.+|.|||...-.... .+ .+.-.||..|.+|...+|++|++++.. . .--.|+++...
T Consensus 12 ~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~~ 91 (410)
T 1dkq_A 12 VIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDE 91 (410)
T ss_dssp EEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSSH
T ss_pred EEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCcH
Confidence 467899987432211 01 113469999999999999999988631 1 12358999999
Q ss_pred HHHHhhhcc
Q 005630 618 RTILTASPI 626 (687)
Q Consensus 618 Ra~qTA~~i 626 (687)
||++||+.+
T Consensus 92 RT~~SA~~~ 100 (410)
T 1dkq_A 92 RTRKTGEAF 100 (410)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.28 E-value=0.26 Score=52.62 Aligned_cols=124 Identities=10% Similarity=0.092 Sum_probs=60.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhhHHHhhCCCCC-CCCcC-CCCHHHHHHHHHHHHHHHHHH-H
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFR-ADNPEGMEARNEVAALAMEDM-I 427 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyRr~~~g~~~~-~~f~~-~~~e~~~~~~~~vA~~~L~dl-~ 427 (687)
..+|+++|-+||||||+.+.|...+... .-.+..++.+......... ..+.. ...... . .......+. .
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~--~---~~~~t~~~~i~ 246 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEE--E---NAPVTAATLLR 246 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC---------------CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccc--c---ccccCHHHHHH
Confidence 3489999999999999999999875432 1122112222111000000 01111 110000 0 000001111 1
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHhhhc
Q 005630 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (687)
Q Consensus 428 ~~L~~~G~iVIlDAtn~~~e~R~~l~el~~~~~~vvfIE~~c~d~eii~rrI~~r~~ 484 (687)
..+.......|++..-.. +-.+.+..+ ..|....+.++...+......|+.....
T Consensus 247 ~~l~~~pd~~l~~e~r~~-~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 247 SCLRMKPTRILLAELRGG-EAYDFINVA-ASGHGGSITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp HHTTSCCSEEEESCCCST-HHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCEEEEcCchHH-HHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 123334566777776543 333444444 3344455667788888888888877654
No 309
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=91.22 E-value=0.42 Score=50.63 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=48.0
Q ss_pred cEEEeccCCcccccC--C----CcCCCCCCCHHHHHHHHHHHHHHHHHh---ccC-------CCCEEEecCcHHHHHhhh
Q 005630 561 PILLTRHGESRDNVR--G----RIGGDTILSDAGEIYAKKLANFVEKRL---KSE-------RAASIWTSTLQRTILTAS 624 (687)
Q Consensus 561 ~I~LVRHGeS~~n~~--~----~~~gD~pLSe~G~~qA~~La~~L~~~l---~~~-------~~~~V~tSpl~Ra~qTA~ 624 (687)
-+.|.|||...-... . ...|...||+.|.+|...+|++++++. .+. .--.++++...||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 356789998753211 0 011235799999999999999999886 221 123689999999999999
Q ss_pred cc
Q 005630 625 PI 626 (687)
Q Consensus 625 ~i 626 (687)
.+
T Consensus 91 ~~ 92 (342)
T 3it3_A 91 SL 92 (342)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 310
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.19 E-value=0.091 Score=53.96 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
..|+++|-||+|||++|+++++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999864
No 311
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.12 E-value=0.053 Score=49.76 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+++|-||+|||++|+.|+....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 77899999999999999987643
No 312
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.06 E-value=0.064 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+|+|-||+|||++|+.|++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999865
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.03 E-value=0.21 Score=52.80 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=29.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
+..+|.++|.||+||||+.+.|...+...+-+..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4679999999999999999999988765555554443
No 314
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.03 E-value=0.1 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...++.++|-||+||||+++.|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999975
No 315
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.02 E-value=0.12 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
++++|-||+||||+|+.|++.+.-
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999999764
No 316
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=90.95 E-value=0.21 Score=52.09 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC-CCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~-~~~W~~~l~~~~~~~~leyKf~i~~~~~~~~~~ 105 (687)
....-.|+|+..+| ....+.|+|+=. +|+ +.++|+... .+.|++++.+++ +..+|||++=. .
T Consensus 166 ~~~k~~v~f~~~~~---~~~~V~v~GsF~---~W~--~~~~l~k~~~~g~~~~~~~L~~--G~y~YkFiVDG-------~ 228 (294)
T 3nme_A 166 GLKRKTVTLTLKDK---GFSRVEISGLDI---GWG--QRIPLTLGKGTGFWILKRELPE--GQFEYKYIIDG-------E 228 (294)
T ss_dssp CCCCEEEEEEEECS---SCSCEEEEETTT---EEE--EEEECEECTTTCEEEEEEEECS--EEEEEEEEETT-------E
T ss_pred ccccccceeeeccC---CCCEEEEEEecc---CCC--CcccceEcCCCCEEEEEEECCC--ceEEEEEEECC-------E
Confidence 34556899999999 567799999776 788 789999964 899999999886 57899999743 3
Q ss_pred eccCCCcccc
Q 005630 106 VEEGPNRLLT 115 (687)
Q Consensus 106 wE~g~NR~l~ 115 (687)
|-..++-...
T Consensus 229 w~~d~~~~~~ 238 (294)
T 3nme_A 229 WTHNEAEPFI 238 (294)
T ss_dssp EECCTTSCEE
T ss_pred EeeCCCCCee
Confidence 7777765533
No 317
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.91 E-value=0.48 Score=52.95 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=27.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
+.-++.++|.||+||||+++.|+..+...|-++..+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 345899999999999999999998776545443333
No 318
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.85 E-value=0.073 Score=55.26 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-++|+|-||+|||++|+.|++.++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4888999999999999999998753
No 319
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.76 E-value=0.12 Score=60.49 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
=++|+|-||+|||++|+.|++.+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999984
No 320
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.73 E-value=0.16 Score=52.51 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.++-.|+|.|.||+|||++|.+|+..+...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 345579999999999999999999875433
No 321
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.73 E-value=0.12 Score=50.64 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=31.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
|.+.|-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 334899999999999999999999999988887754
No 322
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.70 E-value=1 Score=47.77 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=25.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CcCceEEe
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFN 386 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~ 386 (687)
++.+.|-||+||||||-.++...... +-.+-.++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68999999999999999888776543 44444443
No 323
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.68 E-value=0.44 Score=51.89 Aligned_cols=39 Identities=3% Similarity=0.033 Sum_probs=25.5
Q ss_pred CCeEEEEeCCCCCHHHHHHHHH-HHcCCceEEEEEEEeCC
Q 005630 433 GGQVGIFDATNSSRKRRNMLMK-MAEGNCKIIFLETICND 471 (687)
Q Consensus 433 ~G~iVIlDAtn~~~e~R~~l~e-l~~~~~~vvfIE~~c~d 471 (687)
.+-+.++|++.........+.+ +.+.+.+++++--.|+.
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 123 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 4677889998865443334444 45667788777767764
No 324
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.68 E-value=0.13 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+. ++++|-||+||||+++.|++.+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 344 89999999999999999999763
No 325
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.65 E-value=0.12 Score=57.61 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+..++|+|.||+||||+|+.|++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999999974
No 326
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.56 E-value=0.19 Score=51.24 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
..-+++++|-+||||||+.+.|...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 45689999999999999999999987643
No 327
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.53 E-value=0.3 Score=48.83 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=33.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
.+..+++++|-|||||||.+-.++.++...+.++.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34679999999999999999999999888888888874
No 328
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.53 E-value=0.26 Score=48.37 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=34.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~gdy 390 (687)
.+.+.+..+-.|+||||+|..|+..|... |.++-++|.|-.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34566666889999999999999999988 999999987543
No 329
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.49 E-value=0.23 Score=48.53 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=32.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 445566688999999999999999998899998888754
No 330
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.48 E-value=0.24 Score=50.49 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+|.+.|-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4545799999999999999999998899998888763
No 331
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.48 E-value=0.2 Score=50.44 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=34.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+.+.++.|-.|+||||+|..|+..|...|.++-++|.|-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35566777899999999999999999988999888887644
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.44 E-value=0.21 Score=58.36 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=32.9
Q ss_pred ccE-EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~-lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+|. -++|+|-||+|||++|++|++.+...+.....++..+|
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 444 68999999999999999999998655566666766555
No 333
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.40 E-value=0.18 Score=47.67 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
..-++.++|-.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999886
No 334
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.40 E-value=0.11 Score=56.91 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+.-|+|+|.||+|||++|++|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999986
No 335
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.33 E-value=0.22 Score=53.16 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=35.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCcCceEEehhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 389 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~gd 389 (687)
.+.++++.|-.|.||||+|..|+..|. ..|.++-+++.|-
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 356888999999999999999999999 8899999988764
No 336
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.31 E-value=0.25 Score=49.45 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+|.+.|-.|+||||+|..|+..|...|.++-++|.|
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 444479999999999999999999889999888875
No 337
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.30 E-value=0.16 Score=53.09 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
+-.++++|-||+||||+|+.+++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347899999999999999999999864
No 338
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.28 E-value=0.15 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
+-++.++|.+|||||||.+.|+..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3489999999999999999999987
No 339
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.21 E-value=0.2 Score=50.31 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=33.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
.+.+.+..+-.|+||||+|..|+..|. .|.++-++|.|-.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 345556678999999999999999999 8999988887643
No 340
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.20 E-value=0.15 Score=57.58 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+..++|+|-||+||||+|+.|+..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3458999999999999999999999853
No 341
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.93 E-value=0.35 Score=49.48 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=31.8
Q ss_pred EEEEEE-ccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 352 LAIVLV-GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 352 ~lIvLv-GLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
.+|.++ .-+|.||||+|..||..|...|.++-++|.|-
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 455555 57999999999999999999999998888763
No 342
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.92 E-value=0.35 Score=49.98 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 348 ~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
...+.+.+..+-+|.||||+|..||..|...|.++-++|.|-.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 3345666777789999999999999999988999988887543
No 343
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.88 E-value=0.17 Score=51.33 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
++++|-||+|||++|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999974
No 344
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.87 E-value=0.3 Score=47.63 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=31.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
.+.+..+-.|+||||+|..|+..|...| ++-++|.|-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 3556678899999999999999999999 888887653
No 345
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.83 E-value=0.75 Score=58.51 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
++-+|++.|-||+||||+|..++..+...+.++-.++..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 455899999999999999999999887777677666653
No 346
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.78 E-value=0.28 Score=48.53 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 455666788999999999999999999999998888764
No 347
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=89.74 E-value=0.33 Score=48.38 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=33.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.+.++.+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456667789999999999999999998898988888754
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.74 E-value=0.26 Score=44.82 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+++-|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999998864
No 349
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.73 E-value=0.19 Score=48.36 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
....-|+++|.+|+||||+..+|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998865
No 350
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.61 E-value=0.25 Score=52.65 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=35.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~g 388 (687)
.+.++++.|-.|.||||+|..|+..+. ..|.++-+++.|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 346888999999999999999999999 889999999886
No 351
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.54 E-value=0.21 Score=46.62 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.+.-|+++|.||+|||||..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999753
No 352
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.53 E-value=0.25 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
...+=|+++|.+|+|||||..+|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3567799999999999999998875
No 353
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.52 E-value=0.22 Score=45.92 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
...|+++|.||+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999974
No 354
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=89.50 E-value=0.12 Score=54.97 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=26.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
+++.|++-|.-|+||||+++.|+++|...
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 56899999999999999999999998763
No 355
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.50 E-value=0.25 Score=55.89 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=34.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+.+++++|-+|.||||+|..|+..+...|.++-+++.|
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 45788999999999999999999999999999998876
No 356
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.48 E-value=0.2 Score=52.03 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
.-|+++|-||+|||++|+.|+......+.....++
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 34788999999999999999987654444444444
No 357
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.33 E-value=0.17 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..-|+++|.||+||||+|.+|.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457999999999999999999985
No 358
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.31 E-value=0.22 Score=50.60 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.-+++++|-||+||||++..|+..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999998654
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.25 E-value=0.25 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
++-|+++|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998754
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.21 E-value=0.25 Score=44.63 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+||||+..+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998753
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.18 E-value=0.8 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+.-|+|+|-||+||||+|+.|+..++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999998754
No 362
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=89.09 E-value=0.51 Score=51.25 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc--cC------C--CCEEEecCcHHHHHhhhcc
Q 005630 581 DTILSDAGEIYAKKLANFVEKRLK--SE------R--AASIWTSTLQRTILTASPI 626 (687)
Q Consensus 581 D~pLSe~G~~qA~~La~~L~~~l~--~~------~--~~~V~tSpl~Ra~qTA~~i 626 (687)
.-.||+.|.+|...+|++|+++.. +. . --.|+++...||++||+.+
T Consensus 53 ~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~~Rt~~Sa~~f 108 (418)
T 2wnh_A 53 DGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQAL 108 (418)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSSHHHHHHHHHH
T ss_pred cCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCCHHHHHHHHHH
Confidence 446999999999999999988764 21 1 2348999999999999988
No 363
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.06 E-value=0.17 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+|+++|-+|||||++|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3788999999999999999865
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.00 E-value=0.28 Score=44.83 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+-|+++|.+|+|||||..+|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4577999999999999999998754
No 365
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.92 E-value=0.25 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+.|+++|.+|+|||||.+.|...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999998864
No 366
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=88.86 E-value=0.55 Score=54.46 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=52.6
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEE
Q 005630 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (687)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~Wd~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~i 95 (687)
..+..-|+|.+..|. ....+.|+|+-. +|++. +.+|... .+.|++.+++|+- .-+|||+|
T Consensus 14 ~~~~~~v~f~~~~~~--~~~~v~~~G~Fn---~w~~~-~~~~~~~-~~~~~~~~~L~~g--~~~y~f~v 73 (696)
T 4aee_A 14 RKGRYIVKFTRHWPQ--YAKNIYLIGEFT---SLYPG-FVKLRKI-EEQGIVYLKLWPG--EYGYGFQI 73 (696)
T ss_dssp EEEEEEEEEEEECCT--TCSCEEEEETTS---CSSTT-SCBCEEE-TTEEEEEEEECSE--EEEEEEEE
T ss_pred CCCcEEEEEEEECCC--CCcEEEEEEecC---CCCCC-CcceEec-CCeEEEEEEcCCc--eEEEEEEE
Confidence 457788999999988 567899999999 99985 6899988 8999999999885 68999998
No 367
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.83 E-value=0.48 Score=49.13 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=32.0
Q ss_pred cEEEEEEc-cCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 351 HLAIVLVG-LPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 351 ~~lIvLvG-LPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
+.+|+++| -+|.||||+|..||..|...|.++-+++.|-
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34555555 6999999999999999998899998888754
No 368
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.77 E-value=0.28 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++.-|+++|.+|+|||||..+|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 566799999999999999998864
No 369
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.77 E-value=0.29 Score=44.01 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++=|+++|.+|+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999988874
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.67 E-value=0.28 Score=45.87 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=21.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...+=|+++|.+|+|||||..+|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998753
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.61 E-value=0.3 Score=52.40 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
.+-+|+++|-+||||||+.+.|...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 35689999999999999999999987653
No 372
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.56 E-value=1.8 Score=56.03 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=37.4
Q ss_pred hhhhcC-CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 340 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 340 ~~~~~~-~~~~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.|.+++ -.-.++..|+++|.||+||||||.+++......|.++..++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 344444 2223566999999999999999999998887778888777654
No 373
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.55 E-value=1.4 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar 373 (687)
..|+++|.||+|||||..+|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998874
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.46 E-value=0.29 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+++-|+++|.+|+|||||..+|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4678999999999999999999754
No 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.35 E-value=0.36 Score=54.89 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEE
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (687)
-+++++|-||+||||+++.|.+.+...+.++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3788999999999999999999988777655443
No 376
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.35 E-value=0.37 Score=49.07 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=33.4
Q ss_pred cEEEEEE--ccCCCChHHHHHHHHHHHhhcCcCceEEehhhhH
Q 005630 351 HLAIVLV--GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (687)
Q Consensus 351 ~~lIvLv--GLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdyR 391 (687)
+.+.++. +-.|+||||+|..|+..|...|.++-++|.|-..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3344444 6999999999999999999899999998886553
No 377
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.32 E-value=0.39 Score=52.68 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCc
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi 380 (687)
.+++.|.||+||||++..+++.|...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999987665
No 378
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.31 E-value=0.21 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005630 354 IVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
|+|+|-||+||||+|++|+..+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998864
No 379
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.30 E-value=0.3 Score=44.22 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+-|+++|.+|+||||+..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46689999999999999998874
No 380
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.12 E-value=0.33 Score=44.31 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.++-|+++|.||+|||||..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356799999999999999998864
No 381
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.08 E-value=0.18 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
....|+++|.+|+|||||.+.|...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988743
No 382
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.02 E-value=0.29 Score=45.79 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+.-|+++|.+|+||||+..+|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999998754
No 383
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.96 E-value=0.35 Score=43.49 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
++=|+++|.+|+|||||..+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999888753
No 384
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.90 E-value=0.52 Score=55.78 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
|.=|+|.|.||+|||.+|++||..++..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 3458899999999999999999886543
No 385
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.89 E-value=0.25 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
-+++++|+.||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 38899999999999999999865
No 386
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=87.84 E-value=0.23 Score=53.77 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=24.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
.+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 3677899999999999999999999988665
No 387
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.77 E-value=0.41 Score=43.87 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+.+=|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999874
No 388
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.72 E-value=0.28 Score=44.55 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEEccCCCChHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLT 372 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~La 372 (687)
+=|+++|.+|+|||||..+|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999985
No 389
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.68 E-value=0.35 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998743
No 390
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.63 E-value=0.49 Score=50.41 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=32.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.+.+.++.|-.|+||||+|..||..|...|.++-++|.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 344555557999999999999999999889999999876
No 391
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.62 E-value=0.27 Score=44.57 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.1
Q ss_pred EEEEEccCCCChHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLT 372 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~La 372 (687)
=|+++|.||+|||||..+|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998885
No 392
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.60 E-value=0.38 Score=43.43 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++=|+++|.+|+|||||..+|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999998875
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.56 E-value=0.37 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+-|+++|.+|+|||||..+|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888753
No 394
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.49 E-value=0.53 Score=53.25 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=35.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
.+.++++.|.+|.||||+|..|+..|...|.++-+++.|
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 467889999999999999999999999999999888775
No 395
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.38 E-value=0.33 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+.+-|+++|.+|+|||||..+|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999998874
No 396
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.38 E-value=0.5 Score=43.82 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4677999999999999999998754
No 397
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.37 E-value=0.45 Score=43.52 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+.+-|+++|.+|+|||||..+|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988754
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.34 E-value=1.9 Score=55.70 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
++.++++.|-||+||||+|..++......+..+-.++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 456999999999999999999998887666666666553
No 399
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.20 E-value=0.26 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+=|+++|.+|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999875
No 400
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.15 E-value=0.38 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.+-|+++|.+|+|||||.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999854
No 401
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.08 E-value=0.37 Score=50.49 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
-+-.++++|-||+|||++|+.+++.|.-
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3458999999999999999999999864
No 402
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.06 E-value=0.4 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+.+-|+++|.+|+|||||..+|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 567799999999999999988864
No 403
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.00 E-value=0.28 Score=49.12 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-.||||||+.+.|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3489999999999999999998543
No 404
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.00 E-value=0.3 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|..|||||||.+.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999999976
No 405
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.00 E-value=0.28 Score=48.69 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|..|||||||.+.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3488999999999999999998543
No 406
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=86.97 E-value=0.33 Score=48.58 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=33.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
+.+.+..+-.|+||||+|..|+..|...|.++-++|.|-.
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4444555888999999999999999988999999887643
No 407
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.94 E-value=0.39 Score=51.38 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
-+|+++|-+||||||+.+.|...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 389999999999999999999988754
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.89 E-value=0.4 Score=43.25 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.++-|+++|.+|+|||||..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998875
No 409
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.87 E-value=0.67 Score=44.85 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=28.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
.+.+..+-+|+||||+|..|+..|...|.++-+++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 34455567999999999999999998898887764
No 410
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.80 E-value=0.44 Score=43.23 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999888743
No 411
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.76 E-value=0.29 Score=51.90 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
..+.++|-+|||||||++.|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 412
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.74 E-value=0.42 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999888743
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.70 E-value=0.48 Score=43.78 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...+-|+++|.+|+|||||..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34677999999999999999988743
No 414
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.68 E-value=0.51 Score=50.36 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=32.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceEEeh-hhhHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRR 392 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-gdyRr 392 (687)
-++++|-+||||||+++.|...+...+....+++. ++|+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE 77 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH
Confidence 36788999999999999999888877888888875 34544
No 415
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=86.68 E-value=0.97 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.++-|+++|.||+|||||.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998754
No 416
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.67 E-value=0.22 Score=55.80 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
=|+|+|-||+|||++|++|+..+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 478899999999999999998763
No 417
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.62 E-value=0.52 Score=44.39 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.+.+=|+++|.+|+|||||..+|...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999887653
No 418
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=86.58 E-value=0.78 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.|+++|.|++|||||-.+|...
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988743
No 419
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.58 E-value=0.5 Score=44.24 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
..+=|+++|.+|+|||||..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 457799999999999999998875
No 420
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.48 E-value=0.45 Score=44.68 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
...+=|+++|.+|+|||||..+|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 4566799999999999999988874
No 421
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=86.46 E-value=2.2 Score=44.31 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=16.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
..|||+|- ||+||.++|.+...
T Consensus 101 RpvVl~Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 101 RPVIILGP---LKDRINDDLISEYP 122 (292)
T ss_dssp CCEEEEST---THHHHHHHHHHHCT
T ss_pred CeEEEeCC---CHHHHHHHHHHhCh
Confidence 34666764 69999999988764
No 422
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.43 E-value=0.31 Score=48.86 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-+||||||+.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 423
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.41 E-value=0.36 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~La 372 (687)
.+++-|+++|.+|+|||||..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999998876
No 424
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.41 E-value=0.49 Score=48.28 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=32.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gd 389 (687)
.+.+..+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44455588899999999999999999999998888765
No 425
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.36 E-value=0.49 Score=44.20 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+.+-|+++|.+|+|||||..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999998873
No 426
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.33 E-value=0.38 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
-++.++|..||||||+.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998654
No 427
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.33 E-value=0.42 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+++++|.+|+|||++++.+++.+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998864
No 428
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.31 E-value=0.46 Score=43.50 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
..+=|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998864
No 429
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.30 E-value=0.39 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
+.+++|-.|||||||.++|.--|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999987654
No 430
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=86.30 E-value=0.24 Score=52.58 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~g 379 (687)
+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 457899999999999999999999988665
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.30 E-value=0.46 Score=43.61 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.++-|+++|.+|+|||||..+|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999988643
No 432
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.23 E-value=0.47 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
...-|+++|.+|+|||||..+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999988864
No 433
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.23 E-value=0.46 Score=42.99 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+.+=|+++|.+|+||||+..+|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999998754
No 434
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.14 E-value=0.39 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-.||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998654
No 435
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=86.16 E-value=0.14 Score=48.70 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+.+=|+++|.+|+|||||..+|..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 556799999999999999988764
No 436
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.04 E-value=0.43 Score=43.12 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005630 354 IVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 354 IvLvGLPGSGKSTlAr~Lar~ 374 (687)
|+++|.+|+|||||..+|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 437
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.04 E-value=0.5 Score=42.70 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+=|+++|.+|+||||+..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999998874
No 438
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=85.99 E-value=0.46 Score=53.27 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
...+|.++|++|.||||||++++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999996
No 439
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.95 E-value=0.35 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|..||||||+.+.|+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 348999999999999999999854
No 440
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.94 E-value=0.51 Score=43.36 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.++=|+++|.+|+|||||..+|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999888743
No 441
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.90 E-value=0.42 Score=44.38 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
..+=|+++|.+|+|||||.+.|....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 45669999999999999987776543
No 442
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.89 E-value=0.41 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|..|||||||.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999964
No 443
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.81 E-value=0.45 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+++-|+++|.+|+|||||..+|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999998874
No 444
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.81 E-value=0.49 Score=43.27 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
..+=|+++|.+|+|||||..+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999988863
No 445
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.76 E-value=0.44 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+.+=|+++|.+|+|||||..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999988874
No 446
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.72 E-value=0.5 Score=43.43 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
..+=|+++|.+|+|||||..+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 356799999999999999988874
No 447
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.66 E-value=0.45 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
..-++.++|-|||||||+++.|+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999775
No 448
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=85.58 E-value=2.7 Score=45.87 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+-|+++|.+++|||||..+|...
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3467999999999999999888543
No 449
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=85.58 E-value=0.48 Score=46.66 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...+-|+|+|.+|+|||||...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 35678999999999999999988753
No 450
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.52 E-value=0.44 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+..-|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999988873
No 451
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.50 E-value=0.42 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005630 353 AIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar 373 (687)
=|+++|.+|+|||||..+|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999988874
No 452
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.49 E-value=0.51 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.++=|+++|.+|+|||||..+|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999864
No 453
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.47 E-value=0.37 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-+|||||||.+.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998653
No 454
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.41 E-value=0.58 Score=43.79 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...+=|+++|.+|+|||||..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 35677999999999999999988753
No 455
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.32 E-value=2.4 Score=53.97 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~g 388 (687)
+..++++.|-||+||||+|..++......+-.+-.++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E 420 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 455899999999999999999998877666666666553
No 456
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.31 E-value=0.42 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLT 372 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~La 372 (687)
..+-|+++|.+|+|||||..+|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45779999999999999998874
No 457
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.29 E-value=0.38 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|..|||||||.+.|+..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998543
No 458
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.23 E-value=0.44 Score=56.49 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEehhhh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~gdy 390 (687)
--|+|+|-||+|||++|+.|++.+...+.....++...+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 378999999999999999999998654444445554433
No 459
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.19 E-value=0.55 Score=43.43 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999988743
No 460
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.17 E-value=0.59 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+.+-|+++|.+|+|||||..+|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3567799999999999999998874
No 461
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.12 E-value=0.74 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
...+|+++|.+|.||||||++++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998753
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.12 E-value=0.54 Score=43.66 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+++-|+++|.+|+|||||..+|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999988874
No 463
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.08 E-value=0.27 Score=58.09 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~ 377 (687)
.+..++|+|.||+||||+|++|+..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3446889999999999999999998754
No 464
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.07 E-value=0.51 Score=48.29 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L~ 376 (687)
.+++++|.+|+||||+++.+++.++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 3889999999999999999998753
No 465
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.06 E-value=0.15 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-+|||||||.+.|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3489999999999999999999765
No 466
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.06 E-value=0.4 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|-.||||||+.+.|+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998854
No 467
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.98 E-value=0.4 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
-++.++|-.||||||+.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 488999999999999999998654
No 468
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.97 E-value=0.47 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|-.|||||||.+.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999964
No 469
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.93 E-value=0.62 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..-|+++|.+|+|||||..+|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999888643
No 470
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.88 E-value=0.41 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|..||||||+.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998654
No 471
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.87 E-value=0.68 Score=43.19 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
..+=|+++|.+|+|||||..+|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999998875
No 472
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.84 E-value=0.55 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.147 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
+.-++|+|-||+|||++|+.|++.+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 3457899999999999999999998643
No 473
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.81 E-value=0.42 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|..||||||+.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998654
No 474
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.74 E-value=0.49 Score=45.19 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+.+-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998754
No 475
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.66 E-value=0.56 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++.-|+++|.+|+|||||..+|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999998863
No 476
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.65 E-value=0.62 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+-|+++|.+|+|||||..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988754
No 477
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.65 E-value=0.59 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.++-|+++|.+|+|||||..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999988753
No 478
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.64 E-value=0.42 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-.|||||||.+.|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3489999999999999999998654
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.63 E-value=0.42 Score=48.97 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|-+|||||||.+.|+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999854
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.63 E-value=0.69 Score=43.49 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888743
No 481
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.62 E-value=0.54 Score=48.74 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..-+++++|-||+|||++|..|+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999975
No 482
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.61 E-value=0.5 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+=|+++|.+|+|||||..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999988864
No 483
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.58 E-value=0.43 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
.-++.++|..|||||||.+.|+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 348899999999999999999854
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=84.53 E-value=0.57 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.++-|+|+|.||+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 567899999999999999988864
No 485
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.48 E-value=2.5 Score=46.16 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=25.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCcCceE
Q 005630 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (687)
Q Consensus 353 lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (687)
-+.++|-||+|||||++.|++.+...+-++++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~ 207 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 207 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeE
Confidence 57788999999999999999998765444433
No 486
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.33 E-value=0.76 Score=42.93 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999988753
No 487
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.31 E-value=0.58 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3456999999999999999988764
No 488
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.29 E-value=0.53 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
++.-|+++|.+|+|||||..+|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999998875
No 489
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.20 E-value=0.57 Score=43.04 Aligned_cols=24 Identities=38% Similarity=0.326 Sum_probs=20.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
+.+=|+++|.+|+|||||..+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999988874
No 490
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.19 E-value=0.61 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar 373 (687)
.+.-|+++|.+|+|||||..+|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 566799999999999999988764
No 491
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.10 E-value=0.68 Score=43.50 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4577999999999999999888753
No 492
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.06 E-value=0.4 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 005630 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 352 ~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
-++.++|..||||||+.+.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999998654
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.01 E-value=0.47 Score=48.37 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|-.||||||+.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999998653
No 494
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.00 E-value=0.51 Score=44.15 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+.+-|+++|.+|+|||||..+|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 5677999999999999999888754
No 495
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.99 E-value=0.71 Score=43.47 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
..+=|+++|.+|+|||||..+|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988753
No 496
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.99 E-value=0.88 Score=49.72 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
..-+|+++|-+||||||+.+.|...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 34589999999999999999999887543
No 497
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=83.96 E-value=2.9 Score=44.90 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~L~~~ 378 (687)
..+-|+++|.+++|||||..+|...+...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~ 38 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAE 38 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhc
Confidence 45679999999999999999998765433
No 498
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.95 E-value=0.68 Score=43.88 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 005630 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (687)
Q Consensus 350 ~~~lIvLvGLPGSGKSTlAr~Lar~ 374 (687)
+.+=|+++|.+|+|||||..+|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4667999999999999999998753
No 499
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.85 E-value=0.49 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005630 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (687)
Q Consensus 351 ~~lIvLvGLPGSGKSTlAr~Lar~L 375 (687)
.-++.++|..|||||||.+.|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998543
No 500
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.84 E-value=1.1 Score=44.79 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=28.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCcCceEEe
Q 005630 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (687)
Q Consensus 349 ~~~~lIvLvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (687)
....+.+++|-|||||||.+-.++.++...+.++.++.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 35689999999999999966555566666677877774
Done!