Your job contains 1 sequence.
>005631
MMILLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK
IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS
GSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGGDGSDDGSGTQSSWTKKAV
EVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS
RDLDVGGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSK
LKYEAAKLAGAITKIIDSDKEDTEYEASNKPSKILDINSKSIKDSKELPSLELSLKRLRG
VKDIGTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCG
IQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKN
DLLCSPRQVLLDKRDDLVASSVLVHPRSTQEQLTQHYDNCHHLVHNMQQQHLPHDHDQLS
LKKMAEAVPQCGSSNMLGGFVEGNAGNYSINGSASGSNHGSNGQNGSSTAVNAGGMNVES
DNGIAGKSGSGGASGSGSGSGNRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRL
AEQRPRIRGQFVRQTANENTSREPECS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005631
(687 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 1025 1.8e-103 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 311 4.3e-43 3
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 200 7.1e-26 3
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 176 3.1e-14 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 173 1.6e-09 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 148 1.8e-09 1
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 176 2.6e-09 2
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 146 8.6e-09 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 162 9.6e-09 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 161 2.3e-08 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 163 2.5e-08 2
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 135 4.4e-08 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 142 1.0e-07 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 134 1.1e-07 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 135 1.3e-07 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 130 1.5e-07 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 143 2.2e-07 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 148 2.5e-07 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 148 2.5e-07 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 148 5.6e-07 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 145 5.8e-07 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 124 6.6e-07 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 140 8.8e-07 1
TAIR|locus:2031581 - symbol:BBX16 "B-box domain protein 1... 138 1.2e-06 3
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 138 2.2e-06 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 131 3.3e-06 1
TIGR_CMR|CPS_1619 - symbol:CPS_1619 "DNA-binding response... 127 3.8e-06 1
TAIR|locus:2175564 - symbol:CIA2 "chloroplast import appa... 139 4.0e-06 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 116 4.8e-06 1
TAIR|locus:2007482 - symbol:AT1G07050 "AT1G07050" species... 128 5.2e-06 1
UNIPROTKB|Q1CXR3 - symbol:difD "Fibril biogenesis regulat... 115 6.2e-06 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 131 6.4e-06 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 115 1.0e-05 2
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 127 1.0e-05 1
UNIPROTKB|Q9FDX8 - symbol:HD1 "Zinc finger protein HD1" s... 132 1.2e-05 2
UNIPROTKB|Q9FE92 - symbol:Hd1 "Heading day 1" species:453... 132 1.4e-05 2
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 111 1.7e-05 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 111 1.7e-05 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 111 1.7e-05 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 111 1.7e-05 1
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 127 1.9e-05 1
TAIR|locus:2018344 - symbol:AT1G04500 "AT1G04500" species... 124 2.1e-05 2
TAIR|locus:2028421 - symbol:BBX17 "B-box domain protein 1... 130 2.2e-05 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 126 2.4e-05 1
UNIPROTKB|Q746Z1 - symbol:GSU3376 "Response receiver-modu... 129 2.6e-05 1
TIGR_CMR|GSU_3376 - symbol:GSU_3376 "GGDEF/response regul... 129 2.6e-05 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 109 2.7e-05 1
TIGR_CMR|GSU_3198 - symbol:GSU_3198 "chemotaxis protein C... 109 2.7e-05 1
TAIR|locus:2195518 - symbol:AT1G63820 species:3702 "Arabi... 128 2.9e-05 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 129 3.4e-05 2
TAIR|locus:2201277 - symbol:BBX14 "B-box domain protein 1... 130 3.4e-05 1
TAIR|locus:2031180 - symbol:BBX15 "B-box domain protein 1... 130 3.6e-05 1
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 123 4.9e-05 1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 124 5.5e-05 1
TAIR|locus:2143221 - symbol:COL1 "CONSTANS-like 1" specie... 132 5.5e-05 2
TAIR|locus:2168083 - symbol:AT5G59990 "AT5G59990" species... 119 6.6e-05 2
TIGR_CMR|BA_1660 - symbol:BA_1660 "chemotaxis response re... 105 7.3e-05 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 126 8.0e-05 1
TIGR_CMR|CPS_2524 - symbol:CPS_2524 "DNA-binding response... 122 8.1e-05 1
UNIPROTKB|Q48P87 - symbol:pilG "Type IV pilus response re... 104 9.3e-05 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 104 9.3e-05 1
UNIPROTKB|Q1DF43 - symbol:MXAN_0460 "Response regulator" ... 122 9.7e-05 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 136 0.00018 2
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 101 0.00020 1
UNIPROTKB|Q7D1A5 - symbol:cheY "Chemotaxis receiver prote... 101 0.00020 1
NCBI_NP|NP_353549.1 - symbol:cheY "chemotaxisreceiverprot... 101 0.00020 1
TIGR_CMR|BA_4394 - symbol:BA_4394 "stage 0 sporulation pr... 119 0.00023 1
TAIR|locus:2177911 - symbol:AT5G41380 "AT5G41380" species... 120 0.00026 1
TAIR|locus:2145698 - symbol:AT5G14370 species:3702 "Arabi... 125 0.00027 2
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 99 0.00032 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 99 0.00032 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 116 0.00037 1
TAIR|locus:2143206 - symbol:CO "CONSTANS" species:3702 "A... 123 0.00041 2
TIGR_CMR|ECH_0773 - symbol:ECH_0773 "putative response re... 121 0.00041 1
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 124 0.00048 1
TAIR|locus:2132902 - symbol:AT4G27900 "AT4G27900" species... 116 0.00049 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 97 0.00052 1
UNIPROTKB|Q52884 - symbol:cheY2 "CheY2" species:382 "Sino... 97 0.00052 1
UNIPROTKB|Q06065 - symbol:atoC "AtoC transcriptional acti... 120 0.00053 1
CGD|CAL0003874 - symbol:PGA55 species:5476 "Candida albic... 125 0.00064 1
UNIPROTKB|Q59SG9 - symbol:PGA55 "Flocculin-like protein" ... 125 0.00064 1
TAIR|locus:2051099 - symbol:AT2G33350 "AT2G33350" species... 121 0.00072 2
TIGR_CMR|SPO_1624 - symbol:SPO_1624 "DNA-binding response... 107 0.00076 2
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 119 0.00094 1
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 119 0.00094 1
DICTYBASE|DDB_G0268012 - symbol:DDB_G0268012 "response re... 90 0.00098 2
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 238/471 (50%), Positives = 296/471 (62%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ EA+NG+QAWK+LEDL NHID+VLTEV MP LSG+ LL KI++HK+R+N+PVIMMSS D
Sbjct: 104 VVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHD 163
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCT-QTQKSIKSKN 138
SMGLVFKCLSKGAVDFLVKPIRKNELK LWQHVWRRC T QTQKS+KSK+
Sbjct: 164 SMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKS 223
Query: 139 VENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAVEVD-SPRHMSPSDQLAEC 197
++ S ++GS+DE QSSWTKKAV+VD SPR +S D++
Sbjct: 224 IKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVSLWDRV--- 280
Query: 198 PDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLDLQLEY 257
DSTCAQV+HSN E ++ V A KE Q+H+++ E+ RDL++ +R+ DL LE
Sbjct: 281 -DSTCAQVVHSNPEFPSNQLVAPPAEKETQEHDDKFEDVTM-GRDLEISIRRNCDLALEP 338
Query: 258 QTESPIKLVGT-KKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKII 316
+ E K G ++ N + SSK ++ +G LDL+SESPSSK +E G+ K +
Sbjct: 339 KDEPLSKTTGIMRQDNSFEKSSSKWKMKVGKGPLDLSSESPSSKQMHEDG---GSSFKAM 395
Query: 317 DSDKEDT-EYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDIGTTIQDDRNVL 375
S +D E EA N K LD N S+K S G KD GT ++DDRNVL
Sbjct: 396 SSHLQDNREPEAPNTHLKTLDTNEASVKISEELMHVEHSSKRHRGTKDDGTLVRDDRNVL 455
Query: 376 RRSDSSAFSRYNTASNVNKGPGGNIESAS-QVVNSLEIIKKGSDCGIQSHSNGD---PLN 431
RRS+ SAFSRYN ASN NK GGN+ S S Q NS ++IKK ++ HSN + P N
Sbjct: 456 RRSEGSAFSRYNPASNANKISGGNLGSTSLQDNNSQDLIKK-TEAAYDCHSNMNESLPHN 514
Query: 432 QSSNGGSNNMDMGSTT-NNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKND 481
S+ GSNN DM STT NNAF KP K S SS+V HSS FQP D
Sbjct: 515 HRSHVGSNNFDMSSTTENNAFTKPGAPKVSSAGSSSVK--HSS-FQPLPCD 562
Score = 297 (109.6 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 88/257 (34%), Positives = 123/257 (47%)
Query: 426 NGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQ---PTKNDL 482
+G L +S +N+ D+ T A+ + + N+S + + + S++F T+N+
Sbjct: 476 SGGNLGSTSLQDNNSQDLIKKTEAAYDCHSNM-NESLPHNHRSHVGSNNFDMSSTTENNA 534
Query: 483 LCSPRQVLLDKRDDLVASSVLVHPRSTQEQLTQHYDNCHHLVHNMXXXXXXXXXXXXSLK 542
P + SS + H S Q H++N H +N+ K
Sbjct: 535 FTKPGAPKVSS----AGSSSVKHS-SFQPLPCDHHNN--HASYNLVHVAER--------K 579
Query: 543 KMAEAVPQCGSSNMLGGFVEGNAG--NYXXXXXXXXXXXXXXXXXXXXTAVNAGGMNVES 600
K+ PQCGSSN+ +EGN NY +NAGGMN+ S
Sbjct: 580 KLP---PQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGS 636
Query: 601 DNXXXXXXXXXXXXXXXXXXX-NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKR 659
DN N D+NK + REAA+TK+RQK+ ERCFRKKVRYQSRK+
Sbjct: 637 DNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKK 696
Query: 660 LAEQRPRIRGQFVRQTA 676
LAEQRPR+RGQFVR+TA
Sbjct: 697 LAEQRPRVRGQFVRKTA 713
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 311 (114.5 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 56/98 (57%), Positives = 81/98 (82%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 77
KV+ ++GL AW++L++ +++IDL+LTE+ +P +SG ALL+ +M H+ KN+PVIMMSS
Sbjct: 62 KVVA-VSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSS 120
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
DS+ +V KC+ +GA D+L+KP+RKNELKNLWQHVWRR
Sbjct: 121 QDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 158
Score = 176 (67.0 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 630 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 681
+ REAA+ K+R K+ +RCF KKVRYQSRK+LAEQRPR++GQFVR T N + S
Sbjct: 415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR-TVNSDAS 465
Score = 62 (26.9 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 375 LRRSDSSAFSRYNTASNVNKGPGGNIESAS----QVVNSLEIIKK-GSDCG-IQSHSNGD 428
L SD+SAFSR+ + + K ES S S E ++K SD G + SN +
Sbjct: 281 LSLSDASAFSRFEESKSAEKAVVALEESTSGEPKTPTESHEKLRKVTSDQGSATTSSNQE 340
Query: 429 PLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSST 466
+ SS N + + TN P +++ E +++
Sbjct: 341 NIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAAS 378
Score = 39 (18.8 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 268 TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDT 323
T +N+ ++GSS +S + Q + ++ S + E+ + A +K +++ + T
Sbjct: 334 TTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAA-SKEVEAGSQST 388
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 200 (75.5 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
ID++L E+ +P G+ +L I K + +PVIMMS D + +V KCL GA D+LVKP
Sbjct: 65 IDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKP 124
Query: 100 IRKNELKNLWQHVWRR 115
+R NEL NLW H+WRR
Sbjct: 125 LRTNELLNLWTHMWRR 140
Score = 170 (64.9 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 622 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT--ANEN 679
N + NK RE A+ K+R+K+ +RCF KK+RY +RKRLAE+RPR++GQFVR+ N +
Sbjct: 523 NEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVD 582
Query: 680 TSREPE 685
+ +P+
Sbjct: 583 LNGQPD 588
Score = 46 (21.3 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 22/110 (20%), Positives = 46/110 (41%)
Query: 403 ASQVVNSLEIIKKGSDCGIQSHSNG-DPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKS 461
AS+ +N+ + ++ + +NG DP + NG S+++ G+ + G+ N
Sbjct: 309 ASEGINNTKQARRATPKSTVLRTNGQDPPLVNGNG-SHHLHRGAAEKFQVVASEGINNTK 367
Query: 462 EVSSTVNCLHSSSFQPTKNDLLCSPRQVLLDKRDDLVASSVLVHPRSTQE 511
+ + S T + P + +R + +S+ H R+ QE
Sbjct: 368 QAHRSRGTEQYHSQGETLQNGASYPHSL---ERSRTLPTSMESHGRNYQE 414
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 176 (67.0 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 630 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 681
+ REAA+ K+R K+ +RCF KKVRYQSRK+LAEQRPR++GQFVR T N + S
Sbjct: 130 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR-TVNSDAS 180
Score = 39 (18.8 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 268 TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDT 323
T +N+ ++GSS +S + Q + ++ S + E+ + A +K +++ + T
Sbjct: 49 TTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAA-SKEVEAGSQST 103
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 173 (66.0 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T+ A +L + D+V+++V MP + G LL + +LPVIMMS+ D
Sbjct: 63 VTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHV---GLEMDLPVIMMSADD 119
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
S +V K ++ GAVD+L+KP+R LKN+WQHV R+
Sbjct: 120 SKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRK 155
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 148 (57.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 30/93 (32%), Positives = 57/93 (61%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T +G +A ++L L ++ +++T+ MP ++G LL ++ K +PV++MSS +
Sbjct: 37 VTTVDSGKRALEVLS-LDRNVHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSEN 95
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
S + +CL +GA DFL+KP+R +++ L V
Sbjct: 96 SPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRV 128
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 176 (67.0 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T+ A +L N D+V+++V MP + G LL + +LPVIMMS+ D
Sbjct: 54 VTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHV---GLEMDLPVIMMSADD 110
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
S +V K ++ GAVD+L+KP+R LKN+WQHV R+
Sbjct: 111 SKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRK 146
Score = 41 (19.5 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 388 TASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSS 434
T S++ PG N++S+ ++ + + +G + S P+ SS
Sbjct: 379 TGSHMRLRPGQNVQSSGMMLPVADQLPRGGPSMLPSLGQ-QPILSSS 424
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 146 (56.5 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 34/113 (30%), Positives = 64/113 (56%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
++L++T+ MP ++G LL KI +++PV++MSS + + +CL +GA +F +KP
Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKP 128
Query: 100 IRKNELKNLWQHVWR-RC--HXXXXXXXXXCTQTQKSIKSKNVENSGNNTGSN 149
+R +++ L H+ + RC H +++ S + ENS ++T SN
Sbjct: 129 VRLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNS-SNPTSENSSSSTSSN 180
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 162 (62.1 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 37/95 (38%), Positives = 56/95 (58%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T +A ++L + N DLV+++V MP + G LL + +LPVIM+S+
Sbjct: 43 VTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELV---GLEMDLPVIMLSAHS 99
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114
V K ++ GA D+L+KP+R ELKN+WQHV R
Sbjct: 100 DPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVR 134
Score = 49 (22.3 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 412 IIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNN 449
+++ D S++NGD + S N G N D + N
Sbjct: 132 VVRSRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGN 169
Score = 47 (21.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 392 VNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGG-------SNNMDMG 444
+N G + S S + ++ +D G H + PLN S G D
Sbjct: 310 LNTPSGIGVRSLSSPPAGM-FLQNQTDIGKFHHVSSLPLNHSDGGNILQGLPMPLEFDQL 368
Query: 445 STTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLCSP 486
T NN K + + ++ T + SF +N L+ +P
Sbjct: 369 QTNNN---KSRNMNSNKSIAGT--SMAFPSFSTQQNSLISAP 405
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 161 (61.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 25 TNGLQ-AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82
TN Q A ++L + N DLV+++V MP + G LL + +LPVIM+S+
Sbjct: 46 TNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELV---GLEMDLPVIMLSAHSDPK 102
Query: 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
V K + GA D+L+KP+R ELKN+WQHV R+
Sbjct: 103 YVMKGVKHGACDYLLKPVRIEELKNIWQHVVRK 135
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 163 (62.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 41/102 (40%), Positives = 59/102 (57%)
Query: 15 IAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 73
+ +M +T + A IL + + DLVL++V MP ++G LL ++ +LPVI
Sbjct: 31 LRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQV--GLLEMDLPVI 88
Query: 74 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
MMS V ++ GA D+L+KPIR ELKN+WQHV RR
Sbjct: 89 MMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRR 130
Score = 37 (18.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 497 LVASSVLVHPRSTQEQLTQHYDNCHH 522
LV+S L HP++ Q DN HH
Sbjct: 280 LVSSGQL-HPQTLAALFGQPIDN-HH 303
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 135 (52.6 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 27/94 (28%), Positives = 56/94 (59%)
Query: 21 ITEATNGLQAWKIL-EDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
+T + +A ++L L ++++++T+ MP ++G LL ++ K +PV++MSS
Sbjct: 76 VTTVESATRALELLCLGLVPNVNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSE 135
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
+ + +CL +GA DFL+KP+R +++ L +
Sbjct: 136 NVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 142 (55.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 38/119 (31%), Positives = 66/119 (55%)
Query: 34 LEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 92
L+DL ++L++T+ MP LSG LL KI + +PV++MSS + + + +CL +GA
Sbjct: 74 LKDLK--VNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGA 131
Query: 93 VDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVENSGNNTGSNDE 151
+FL+KP++ ++K + Q + R C S K K E+S ++ S+D+
Sbjct: 132 EEFLLKPVKLADVKRIKQLIMRN-------EAEECKILSHSNKRKLQEDSDTSSSSHDD 183
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 35 EDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 93
EDL I+L++T+ MP ++G LL KI + +PV++MSS + + + +CL +GA
Sbjct: 77 EDLK--INLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAE 134
Query: 94 DFLVKPIRKNELKNL 108
DFL+KP++ ++K L
Sbjct: 135 DFLLKPVKLADVKRL 149
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 135 (52.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 35 EDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 93
EDL ++L++T+ MP ++G LL KI + +PV++MSS + + + +CL +GA
Sbjct: 76 EDLK--VNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAE 133
Query: 94 DFLVKPIRKNELKNL 108
DFL+KP++ +++K L
Sbjct: 134 DFLLKPVKLSDVKRL 148
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/103 (32%), Positives = 60/103 (58%)
Query: 21 ITEATNGLQAWKIL--------EDLTN--HIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 69
+T A NGL+A + L + LTN ++L++T+ MP ++G LL K+ K
Sbjct: 46 VTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKE 105
Query: 70 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
+PV+++SS + + KCL+ GA F+ KP++ ++++ L H+
Sbjct: 106 VPVVILSSENIPTRINKCLASGAQMFMQKPLKLSDVEKLKCHL 148
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
+DL++T+ MP ++G LL KI + K +PV++MSS + M + +CL +GA DFL+KP
Sbjct: 88 VDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKP 147
Query: 100 IRKNELKNLWQHVWR 114
++ ++K L ++ R
Sbjct: 148 VKLADVKRLRSYLTR 162
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T N +A + D +DLV+++ P G+ +L ++ S + +P ++M+S
Sbjct: 37 VTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTS---KFGIPTVIMASSG 93
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
V K ++ GA DFL+KP+R EL N+WQH++R+
Sbjct: 94 DTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRK 129
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T N +A + D +DLV+++ P G+ +L ++ S + +P ++M+S
Sbjct: 37 VTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTS---KFGIPTVIMASSG 93
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
V K ++ GA DFL+KP+R EL N+WQH++R+
Sbjct: 94 DTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRK 129
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 148 (57.2 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 25 TNGL--QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81
T GL +A ++L + + D+V+++V MP + G LL + +LPVIMMS
Sbjct: 39 TCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHV---GLELDLPVIMMSVDGET 95
Query: 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
V K + GA D+L+KPIR ELK +WQHV R+
Sbjct: 96 SRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRK 129
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 145 (56.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANEN 679
DREA V +YR+K+ R F K +RY SRK AE RPRI+G+F ++T EN
Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETEN 332
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 124 (48.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 29/98 (29%), Positives = 56/98 (57%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 77
+V+ EA NG QA ++ ++L D+V ++ MP + G+ + +I K N +IM S+
Sbjct: 28 EVVGEAENGAQAVEMYKELKP--DVVTMDITMPEMDGIQAVREIK--KIDPNAKIIMCSA 83
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
+ LV + + GA+DF+VKP +++ + ++ +R
Sbjct: 84 MGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTLKR 121
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 140 (54.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
+DL++T+ MP ++G LL KI + +PV++MSS + + + +CL +GA DFL+KP
Sbjct: 89 VDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKP 148
Query: 100 IRKNELKNLWQHV 112
++ ++K L H+
Sbjct: 149 VKLADVKRLRSHL 161
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 138 (53.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 676
+REA V +Y++K+ R F KK+RY+ RK AEQRPRI+G+FV++T+
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 312 ITKIIDSDKEDTEYEASNKPSKILDINSKSIKD 344
+ ++ D D+E+ E + N SK D + + KD
Sbjct: 240 LKRVKDEDEEEEEAKCENGGSKDSDREASNDKD 272
Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 227 QDHEERCENFAKRSRDLDVGGQR----SLDLQLEY 257
++ E +CEN + D + + SL L+L+Y
Sbjct: 249 EEEEAKCENGGSKDSDREASNDKDRKTSLFLRLDY 283
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 34 LEDLTNHIDLVLTEVMPCL 52
LEDLT ++ +L E CL
Sbjct: 196 LEDLTMDVESLLEEEQLCL 214
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 630 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT-ANEN 679
A+REA V +YR+K+ R F K +RY SRK AE RPRI+G+F ++T + EN
Sbjct: 227 AEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSREN 277
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 131 (51.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84
+G +A +IL N + +++T+ MP ++G LL KI K +PV++MSS + +
Sbjct: 118 SGKRALEILGSEPN-VSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRI 176
Query: 85 FKCLSKGAVDFLVKPIRKNELKNL 108
+CL +GA DFL+KP+R ++ +
Sbjct: 177 SRCLEEGAEDFLLKPVRPADISRI 200
>TIGR_CMR|CPS_1619 [details] [associations]
symbol:CPS_1619 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009061
InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 GO:GO:0003677
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 SUPFAM:SSF46955
TIGRFAMs:TIGR01764 ProtClustDB:CLSK741041 RefSeq:YP_268357.1
ProteinModelPortal:Q485A8 STRING:Q485A8 GeneID:3520728
KEGG:cps:CPS_1619 PATRIC:21466431 HOGENOM:HOG000133916 OMA:DEYEIAM
BioCyc:CPSY167879:GI48-1696-MONOMER Uniprot:Q485A8
Length = 185
Score = 127 (49.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 24 ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83
A +G +A ++E + I + L VMP + G A+ I S++ KN P+I MS L
Sbjct: 95 AYSGFEAGSMIEKIKPSI-IFLDLVMPDIDGFAVCKHIRSNEASKNTPIIAMSGLSQQEN 153
Query: 84 VFKCLSKGAVDFLVKPIRKNELK 106
+ K ++ GA FL+KPIR + LK
Sbjct: 154 IEKVIASGANTFLMKPIRLSVLK 176
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 139 (54.0 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 632 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENT 680
REA+V +Y++K+ R F KK+RYQ RK A+QRPR++G+FVR+ NE+T
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRP-NEST 430
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 116 (45.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 25/93 (26%), Positives = 52/93 (55%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ EA +G++AW +L + +++T+ MP ++G+ L+ K+ + K +++P+IM+++
Sbjct: 28 VLEAEHGVEAWDLLTK-NEDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEG 86
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
V L G +++VKP LK + V
Sbjct: 87 GKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 128 (50.1 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 624 IDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 674
I++ + REA+V +Y++K+ R F KK+RYQ RK A++RPR +G+FV++
Sbjct: 143 IEEKRNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 115 (45.5 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGVALLSKIMSHKTRKNLPVIMMSS 77
+V+ EA NGL+A + ++L DL + VMP SG+ +I+ K + VIM S+
Sbjct: 28 EVVGEAANGLEAVEKYKELKP--DLTTMDIVMPFKSGIEATREII--KADSSAVVIMCSA 83
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNEL 105
L LV + + GA DF+VKP R ++
Sbjct: 84 LGQESLVMEAIEAGASDFIVKPFRAEDV 111
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 131 (51.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 24/76 (31%), Positives = 49/76 (64%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
++L++T+ MP ++G LL ++ + K++PV++MSS + + +CL GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKP 133
Query: 100 IRKNELKNLWQHVWRR 115
++ ++K L H+ +R
Sbjct: 134 VKLADMKKLKSHLLKR 149
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 115 (45.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 70 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
LP IM+S+ + KC++ GAV+FL KP+ +LKN+WQHV
Sbjct: 96 LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQHV 138
Score = 68 (29.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 33/161 (20%), Positives = 61/161 (37%)
Query: 240 SRDLDVGGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSK----LSEQIDRGQLDLNSE 295
SR LD Q +++ +E S K + D+G SK + ++D ++ + E
Sbjct: 189 SRLLDGDCQENINFSMENVNSSTEK---DNMEDHQDIGESKSVDTTNRKLDDDKVVVKEE 245
Query: 296 SPSSKLKYEA--AKLAGAITKIIDSDKEDTEYEASNKPSKILDINSKSIKDSXXXXXXXX 353
S+ + E L T +D K++ E + NK S I +++
Sbjct: 246 RGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPEL 305
Query: 354 XXXXXXGVKDIGTTIQDDRNVLRRSDSSAFSRYNTASNVNK 394
V+ +G +L +R+N AS++ K
Sbjct: 306 HKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQK 346
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 127 (49.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 34 LEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 92
L+DL ++L++T+ MP L+G LL KI + +PV++MSS + + +C+ +GA
Sbjct: 68 LKDLK--VNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGA 125
Query: 93 VDFLVKPIRKNELKNLWQHVWR 114
+FL+KP++ ++K L + + R
Sbjct: 126 EEFLLKPVKLADVKRLKELIMR 147
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 132 (51.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 675
DREA V +YR+KK R F K +RY++RK AE RPRI+G+F +++
Sbjct: 325 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 369
Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 407 VNSLEIIKKGSDCGIQSHSNGD-PLNQSSNGGSNNMDM 443
V+S ++ K SD +++N D N ++N S+N M
Sbjct: 140 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGM 177
Score = 42 (19.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 136 SKNVENSGNNTGSND 150
SK+ +N+ NN +ND
Sbjct: 147 SKDSDNNNNNNNNND 161
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 132 (51.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 675
DREA V +YR+KK R F K +RY++RK AE RPRI+G+F +++
Sbjct: 337 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 381
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 407 VNSLEIIKKGSDCGIQSHSNGD-PLNQSSNGGSNNMDM 443
V+S ++ K SD +++N D N ++N S+N M
Sbjct: 152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGM 189
Score = 42 (19.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 136 SKNVENSGNNTGSND 150
SK+ +N+ NN +ND
Sbjct: 159 SKDSDNNNNNNNNND 173
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ EA +G++AW+ L D +++T+ MP ++G+ L+ K+ S K +P+IM+++
Sbjct: 28 VLEAEHGVEAWEKL-DANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEG 86
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELK 106
V L G +++VKP LK
Sbjct: 87 GKAEVITALKAGVNNYIVKPFTPQVLK 113
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/89 (30%), Positives = 55/89 (61%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ EA++G +A ++L +DL++T++ MP ++G+ L+S + + +++P+ ++S+
Sbjct: 29 VVEASSGFEALRLLP--RERLDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEG 86
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNL 108
S K LS GA ++LVKP L++L
Sbjct: 87 SERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/99 (23%), Positives = 57/99 (57%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ +NG +A L+ +++++T++ MP ++G+ L ++ R N VIM+++
Sbjct: 33 VASVSNGFEALNYLQQ--REVNVIVTDINMPEMNGITFLRELNKSFPRSN--VIMITAYG 88
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR-CH 117
+ + ++ GA +++ KP++ +ELK++ +++ CH
Sbjct: 89 GVESYIEAMNLGAFEYINKPVKLDELKSILTKIFKESCH 127
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/89 (30%), Positives = 55/89 (61%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ EA++G +A ++L +DL++T++ MP ++G+ L+S + + +++P+ ++S+
Sbjct: 29 VVEASSGFEALRLLP--RERLDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEG 86
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNL 108
S K LS GA ++LVKP L++L
Sbjct: 87 SERDREKGLSLGANEYLVKPFDPARLQDL 115
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
++L++T+ MP ++G LL K+ +++PV++MSS + + +CL +GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKP 133
Query: 100 IRKNELKNLWQHVWR 114
+R +L L H+ +
Sbjct: 134 VRLADLNKLKPHMMK 148
>TAIR|locus:2018344 [details] [associations]
symbol:AT1G04500 "AT1G04500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:DQ446226 EMBL:AB493431
IPI:IPI00533670 RefSeq:NP_171944.2 UniGene:At.42446
EnsemblPlants:AT1G04500.1 GeneID:839510 KEGG:ath:AT1G04500
TAIR:At1g04500 HOGENOM:HOG000239716 InParanoid:Q1PFY7 OMA:SPSCSFL
PhylomeDB:Q1PFY7 ProtClustDB:CLSN2680683 Genevestigator:Q1PFY7
Uniprot:Q1PFY7
Length = 386
Score = 124 (48.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 622 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 681
N++ K R+ + +Y +K+ ER F KK++Y RK LA+ RPR+RG+F + +
Sbjct: 278 NKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPN 337
Query: 682 REPECS 687
R+ CS
Sbjct: 338 RQA-CS 342
Score = 51 (23.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 411 EIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNA 450
E+ + CG ++N + SN GSN D +NA
Sbjct: 43 EVTSASNGCGYVENNNTNNFPDKSNSGSNQ-DHEDNNDNA 81
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 625 DKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 675
+K ++REA V +YR K+ R F KK+RY+ RK A++RPR++G+FVR++
Sbjct: 271 EKRVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 126 (49.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
ID+VLT+ MP ++G LL I + K +PVI+MSS + + +C++ GA DF+VKP
Sbjct: 62 IDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKP 121
Query: 100 IRKNELKNL 108
++ +++ L
Sbjct: 122 LQSKDVQRL 130
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 72
E + + EA +GL+ +K L L N +DLVL ++ MP + G LS S ++LP+
Sbjct: 24 EARLFETYLEARDGLEGFKTL--LNNKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPI 81
Query: 73 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 105
I+++S + + L +GA D++ KP EL
Sbjct: 82 ILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 72
E + + EA +GL+ +K L L N +DLVL ++ MP + G LS S ++LP+
Sbjct: 24 EARLFETYLEARDGLEGFKTL--LNNKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPI 81
Query: 73 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 105
I+++S + + L +GA D++ KP EL
Sbjct: 82 ILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 24/93 (25%), Positives = 54/93 (58%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T + +QA L D + +D+++++ MP ++G LL ++ +LPV++ SS +
Sbjct: 30 VTAVESVMQALMFL-DSEHDVDMIVSDYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDN 88
Query: 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
+ KCL GA D+++KP++ ++ + +++
Sbjct: 89 IPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 73
E A +V+ EA++G +A D+ + + L +MP +G+ L +IM+ + V+
Sbjct: 23 EDAGYEVVAEASDGAEAVVTFRDVRPDV-VTLDIIMPVKNGIEALREIMAIDPKAR--VV 79
Query: 74 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
+ S++ LV K S GA DF++KP +K++ + V
Sbjct: 80 ICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>TAIR|locus:2195518 [details] [associations]
symbol:AT1G63820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002684 GenomeReviews:CT485782_GR
HOGENOM:HOG000090374 ProtClustDB:CLSN2681537 EMBL:AK176159
IPI:IPI00542615 RefSeq:NP_176567.2 UniGene:At.50956
EnsemblPlants:AT1G63820.1 GeneID:842685 KEGG:ath:AT1G63820
TAIR:At1g63820 eggNOG:NOG240378 InParanoid:Q67ZF8 OMA:TQRNFTK
PhylomeDB:Q67ZF8 ArrayExpress:Q67ZF8 Genevestigator:Q67ZF8
Uniprot:Q67ZF8
Length = 293
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 623 RIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSR 682
R+ + +R+ ++KYR K+T+R F K ++Y RK LA+ RPR+RG+F R N+
Sbjct: 183 RVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFAR---NDEVFE 239
Query: 683 EPE 685
P+
Sbjct: 240 NPK 242
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 129 (50.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSRE 683
+REA V +YR+KK R F K +RY SRK AE RPRI+G+F ++ E + E
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEE 329
Score = 42 (19.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 499 ASSVLV-HPRSTQEQLTQ 515
AS + V HPR+T+E + Q
Sbjct: 244 ASDITVQHPRTTKETIDQ 261
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 130 (50.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 632 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 676
REA V++YR+K+ R F KK+RY+ RK AE+RPR++G+FV++++
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSS 401
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 629 FAD--REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 676
F D REA V++YR+K+ R F KK+RY+ RK AE+RPR++G+FV++ +
Sbjct: 356 FGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAS 405
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 123 (48.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
I+L++T+ MP ++G LL K+ +++PV++MSS + + +CL +GA +F +KP
Sbjct: 72 INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKP 131
Query: 100 IRKNELKNLWQHVWR 114
++ +L L H+ +
Sbjct: 132 VKLADLTKLKPHMMK 146
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99
ID+VLT+ MP ++G LL I + + +PV++MSS + + +CL+ GA DF++KP
Sbjct: 84 IDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKP 143
Query: 100 IRKNELKNL 108
++ N+++ L
Sbjct: 144 LKMNDVQRL 152
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 132 (51.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 674
DREA V +YR+KK R F K +RY SRK AE+RPRI+G+F ++
Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
Score = 37 (18.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 141 NSGNNTGSND 150
NSG N+G+N+
Sbjct: 146 NSGKNSGNNN 155
>TAIR|locus:2168083 [details] [associations]
symbol:AT5G59990 "AT5G59990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015475 EMBL:AY924872
IPI:IPI00537727 RefSeq:NP_200807.1 UniGene:At.55631
EnsemblPlants:AT5G59990.1 GeneID:836121 KEGG:ath:AT5G59990
TAIR:At5g59990 HOGENOM:HOG000064609 InParanoid:Q9FJD8 OMA:RESSTVW
PhylomeDB:Q9FJD8 ProtClustDB:CLSN2686501 ArrayExpress:Q9FJD8
Genevestigator:Q9FJD8 Uniprot:Q9FJD8
Length = 241
Score = 119 (46.9 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSREPE 685
+++ + KYR K+ R F K+++Y+ RK LA+ RPRIRG+F R N+ S++ +
Sbjct: 162 EKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFAR---NDEISQQEQ 213
Score = 43 (20.2 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 403 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAF 451
A++ V+ G + G S S P + S G S M +++N F
Sbjct: 55 AAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQRSVSSHNGF 103
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 105 (42.0 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
+VI EA NG++A + ++L I + L MP + G+ L +I+ K + V++ S++
Sbjct: 29 EVIGEAENGVEAIQKYKELQPDI-VTLDITMPEMDGLEALKEII--KIDASAKVVICSAM 85
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNEL 105
G+V + GA DF+VKP + + +
Sbjct: 86 GQQGMVLDAIKGGAKDFIVKPFQADRV 112
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 126 (49.4 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 24 ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82
A NGL+A ++L D + IDL+L ++ MP L+G A L+ + H ++PVI++++ S
Sbjct: 33 AQNGLEALRVL-DKNSAIDLILLDLEMPELNGFATLATLKKHPLWCDIPVIVLTA--SKD 89
Query: 83 LVFKCLSKGAVDFLVKPIRKNELK-NLWQHV 112
V + L GA DFL KP EL+ + HV
Sbjct: 90 EVTRTLRLGANDFLAKPYDTEELRLRVMNHV 120
>TIGR_CMR|CPS_2524 [details] [associations]
symbol:CPS_2524 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_269240.1 ProteinModelPortal:Q481M9 STRING:Q481M9
GeneID:3520591 KEGG:cps:CPS_2524 PATRIC:21468113 OMA:NIANYME
ProtClustDB:CLSK938208 BioCyc:CPSY167879:GI48-2587-MONOMER
Uniprot:Q481M9
Length = 240
Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 20 VITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
V+ AT G Q ++ LTNH DLV+ ++ +P + G+ + K+ + R ++P+IM+++
Sbjct: 31 VLDFATQGDQGLELA--LTNHYDLVILDLNLPVMDGLEVCKKLRK-QARHHVPIIMLTAR 87
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKN 138
DS+ + GA D+L KP EL+ + RR H Q K +
Sbjct: 88 DSIDDKISGFTLGADDYLTKPFSLEELEVRCFALSRR-HLLQTNDTLIFDQLCIDRKRQQ 146
Query: 139 VENSGNN 145
V SG N
Sbjct: 147 VTRSGQN 153
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 104 (41.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIMMSS 77
+VIT A +G A + D NH ++ ++M P L G + I +++ K+ PVIM+SS
Sbjct: 33 EVIT-AIDGFDALAKIAD--NHPRIIFVDIMMPRLDGYQTCALIKNNRAFKSTPVIMLSS 89
Query: 78 LDSMGLVFKCLSK--GAVDFLVKPIRKNEL 105
D GL K + G+ FL KP K EL
Sbjct: 90 KD--GLFDKAKGRIVGSDQFLTKPFSKEEL 117
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 104 (41.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 21 ITEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
I EA++G+ L+ L+ H IDL+LT++ MP + G+ L+S + S + ++LP+ ++++
Sbjct: 31 IVEASDGVDG---LKKLSAHAIDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIITTE 87
Query: 79 DSMGLVFKCLSKGAVDFLVKPIR 101
+ + L+ GA ++ KPI+
Sbjct: 88 GAAEDRERALALGANAYITKPIQ 110
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 122 (48.0 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+ EA NG +A ++LE + +D+VLT++ MP L GV LL +I R ++PV++M++
Sbjct: 36 VLEAANGEEALRLLEKQS--VDVVLTDIRMPGLHGVELLRRIKQE--RPDMPVVLMTAFT 91
Query: 80 SMGLVFKCLSKGAVDFLVKP 99
+ LV L++GA L KP
Sbjct: 92 AEELVDDALAEGAFTVLPKP 111
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 136 (52.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79
+T NG AW+ + DLVLT+VM P ++G LL +I H +++PVI+MS
Sbjct: 186 VTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTA 245
Query: 80 -SMGLVFKCLSKGAVDFLVKPIRKNELKN----LWQHVWRR 115
+ G DFL KPI K LK + Q +W+R
Sbjct: 246 VDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTVLQSIWQR 286
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 405 QVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNN 449
Q + I+ K I N D ++ SS+ + + S++NN
Sbjct: 744 QFMEDPTILVKSKLPKIDEEENRDKVSSSSSSSTAPLTSTSSSNN 788
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 25/95 (26%), Positives = 52/95 (54%)
Query: 22 TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80
+EA +GL A +L+ + D ++T+ MP ++G+ LL ++ + + K+LPV+M+++
Sbjct: 29 SEADDGLTALPMLQ--SGAFDFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLMVTAEAK 86
Query: 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
+ + G ++VKP LK + ++ R
Sbjct: 87 REQIIEAAQAGVNGYVVKPFTAQALKEKIEKIFER 121
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 77
K IT A +G Q KI+E +H LV+++ MP + G+ L + ++ T K I++++
Sbjct: 32 KQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKMDGLGFLHAVRANPTTKKAAFIILTA 89
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNELK 106
LV K GA + L KP ++++
Sbjct: 90 QGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 77
K IT A +G Q KI+E +H LV+++ MP + G+ L + ++ T K I++++
Sbjct: 32 KQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKMDGLGFLHAVRANPTTKKAAFIILTA 89
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNELK 106
LV K GA + L KP ++++
Sbjct: 90 QGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|BA_4394 [details] [associations]
symbol:BA_4394 "stage 0 sporulation protein A"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 InterPro:IPR012052 InterPro:IPR014879
InterPro:IPR016032 Pfam:PF00072 Pfam:PF08769 PIRSF:PIRSF002937
ProDom:PD010908 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0005509 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0030435
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
SUPFAM:SSF46894 GO:GO:0042173 GO:GO:0050906 EMBL:U09970 PIR:S60868
RefSeq:NP_846624.1 RefSeq:YP_021039.2 RefSeq:YP_030326.1
ProteinModelPortal:P52928 SMR:P52928 DNASU:1087648
EnsemblBacteria:EBBACT00000009270 EnsemblBacteria:EBBACT00000018747
EnsemblBacteria:EBBACT00000019258 GeneID:1087648 GeneID:2814788
GeneID:2852644 KEGG:ban:BA_4394 KEGG:bar:GBAA_4394 KEGG:bat:BAS4076
HOGENOM:HOG000057639 KO:K07699 OMA:RGKPTNS ProtClustDB:CLSK873420
BioCyc:BANT260799:GJAJ-4133-MONOMER
BioCyc:BANT261594:GJ7F-4276-MONOMER TIGRFAMs:TIGR02875
Uniprot:P52928
Length = 264
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 18 MKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP-VIMMS 76
M+VI A NG + +L+D + LVL +MP L G+A+L K M H R P VIM++
Sbjct: 29 MEVIGTAYNGQECLNLLKDKQPDV-LVLDIIMPHLDGLAVLEK-MRHIERLRQPSVIMLT 86
Query: 77 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112
+ + K + GA F++KP +++NL H+
Sbjct: 87 AFGQEDVTKKAVDLGASYFILKPF---DMENLTSHI 119
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 623 RIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 673
++ + +R+ ++KYR K+ +R F K ++Y RK LA+ RPRIRG+F R
Sbjct: 206 KVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFAR 256
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 125 (49.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 632 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 674
REA++ +Y++K+ R F K++RYQ RK AE+RPR++G+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 403 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSE 462
AS VV + + S I+ N + + S+N+D KP L K E
Sbjct: 6 ASPVVGEEKQSTRSSK-RIKKRKNREATTTMEDKSSSNLDASRKIRTKTKKPKFLSLKLE 64
Query: 463 VSST 466
++++
Sbjct: 65 LNTS 68
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 23 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81
EA +GL A +L+ D V+T+ MP + G+ LL I + + K+LPV+M+++
Sbjct: 38 EADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKR 95
Query: 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
+ + G ++VKP LK ++ R
Sbjct: 96 EQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 23 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81
EA +GL A +L+ D V+T+ MP + G+ LL I + + K+LPV+M+++
Sbjct: 38 EADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKR 95
Query: 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
+ + G ++VKP LK ++ R
Sbjct: 96 EQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 129
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 21 ITEATNGLQ-AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
+ +A N ++ A ++LE+ + IDLVL ++ MP +G LL I + + K + ++M+S++
Sbjct: 29 LVQAVNSIKSAIEVLEE--SRIDLVLLDIFMPEETGFELLMYIRNQE--KEIDIMMISAV 84
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNELK 106
MG + K L G VD+L+KP K
Sbjct: 85 HDMGSIKKALQYGVVDYLIKPFTFERFK 112
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 123 (48.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 674
DREA V +YR+K+ R F K +RY SRK AE RPR+ G+F ++
Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 415 KGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFI 452
+G C Q + + + S+G N D GS +NA+I
Sbjct: 222 RGHQCHNQQNFQFN-IKYGSSGTHYN-DNGSINHNAYI 257
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 121 (47.7 bits), Expect = 0.00041, P = 0.00041
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 20 VITEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
V+T ATNG+ A KI E+ H D++L +VM P + G ++ S+ +P++M+++L
Sbjct: 29 VLT-ATNGMDAIKIAEE--KHPDIILLDVMMPEMDGYETCKRLKSNPETTYIPIVMVTAL 85
Query: 79 DSMG-LVFKCLSKGAVDFLVKPIRKNEL 105
D+ LS GA DFL KPI L
Sbjct: 86 DNTSDNRVSGLSYGADDFLTKPINDTAL 113
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 124 (48.7 bits), Expect = 0.00048, P = 0.00048
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 20 VITEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
+IT A NGL+ +IL++ TN IDL+L ++M P + G + I + +P+I +++
Sbjct: 802 IIT-AQNGLECLEILKNNTN-IDLILMDIMMPNMDGYETMEHIRMNLGLHEIPIIALTAK 859
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113
KCLS GA D++ KP+ ++L ++ VW
Sbjct: 860 AMPNDKEKCLSAGASDYISKPLNLHQLYSVMS-VW 893
>TAIR|locus:2132902 [details] [associations]
symbol:AT4G27900 "AT4G27900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002687 EMBL:AL161572 EMBL:AL035524 EMBL:AY062469
EMBL:AY093297 IPI:IPI00527124 PIR:T02891 RefSeq:NP_194519.1
RefSeq:NP_849461.1 UniGene:At.26998 IntAct:Q9SUE8 PRIDE:Q9SUE8
EnsemblPlants:AT4G27900.1 EnsemblPlants:AT4G27900.2 GeneID:828903
KEGG:ath:AT4G27900 TAIR:At4g27900 HOGENOM:HOG000241629
InParanoid:Q9SUE8 OMA:ISCTSED PhylomeDB:Q9SUE8
ProtClustDB:CLSN2685530 Genevestigator:Q9SUE8 Uniprot:Q9SUE8
Length = 261
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 631 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 673
DR +++YR KK++R F +K++Y RK LA+ +PRIRG+F +
Sbjct: 213 DRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAK 255
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 97 (39.2 bits), Expect = 0.00053, P = 0.00052
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 23 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81
EA +G A +L + ID ++T+ MP ++G+ LL + + + K+LPV+M+++
Sbjct: 30 EADDGTTAIPVLN--SGSIDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKR 87
Query: 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115
+ + G ++VKP LK + ++ R
Sbjct: 88 EQIIEAAQAGVNGYVVKPFTAQALKEKIEKIFER 121
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 97 (39.2 bits), Expect = 0.00053, P = 0.00052
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 77
K IT A +G Q KI+ +H LV+++ MP + G+ LL + ++ K I++++
Sbjct: 32 KQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTA 89
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNELK 106
LV K + GA + L KP ++K
Sbjct: 90 QGDRALVQKAAALGANNVLAKPFTIEKMK 118
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 120 (47.3 bits), Expect = 0.00053, P = 0.00053
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 24 ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82
A NG A + D+ H D+VL ++ MP + G+ L ++ SH+TR PVI+M++ +
Sbjct: 34 ANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRT--PVILMTAYAEVE 89
Query: 83 LVFKCLSKGAVDFLVKPIRKNELKNL 108
+ L GA D+++KP +EL NL
Sbjct: 90 TAVEALRCGAFDYVIKPFDLDEL-NL 114
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 125 (49.1 bits), Expect = 0.00064, P = 0.00064
Identities = 66/386 (17%), Positives = 157/386 (40%)
Query: 130 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAV----EVDSP 185
+ + S + +S + S+ E ++ S + + V EV S
Sbjct: 351 SSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSS 410
Query: 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDV 245
+S S +++ + + + + S++++ S V V+++ E E + ++ S +V
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEV 469
Query: 246 GGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEA 305
+ + + S I ++ ++ S SE ++ +S SS + +
Sbjct: 470 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSS 529
Query: 306 AKLAGAITKIIDSDK-EDTEYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDI 364
+ + +++I S + + E S+ S+++ +S + S V
Sbjct: 530 SSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS-SSSEVSSSSEVVSSSSEVSSSSEVSS- 587
Query: 365 GTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSH 424
+ + V+ S+ + S +S+ + S+S+V +S E+ S + S
Sbjct: 588 SSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVSSS 644
Query: 425 SNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLC 484
S + SS S++ ++ S+++ + + + SEV S+ + + SSS + + + +
Sbjct: 645 SQ---VTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS-EVSSSSEVS 700
Query: 485 SPRQVLLDKRDDLVASSVLVHPRSTQ 510
S QV+ ++V+SS V S++
Sbjct: 701 SSSQVI--SSSEVVSSSSEVVSSSSE 724
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 125 (49.1 bits), Expect = 0.00064, P = 0.00064
Identities = 66/386 (17%), Positives = 157/386 (40%)
Query: 130 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAV----EVDSP 185
+ + S + +S + S+ E ++ S + + V EV S
Sbjct: 351 SSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSS 410
Query: 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDV 245
+S S +++ + + + + S++++ S V V+++ E E + ++ S +V
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEV 469
Query: 246 GGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEA 305
+ + + S I ++ ++ S SE ++ +S SS + +
Sbjct: 470 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSS 529
Query: 306 AKLAGAITKIIDSDK-EDTEYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDI 364
+ + +++I S + + E S+ S+++ +S + S V
Sbjct: 530 SSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS-SSSEVSSSSEVVSSSSEVSSSSEVSS- 587
Query: 365 GTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSH 424
+ + V+ S+ + S +S+ + S+S+V +S E+ S + S
Sbjct: 588 SSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVSSS 644
Query: 425 SNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLC 484
S + SS S++ ++ S+++ + + + SEV S+ + + SSS + + + +
Sbjct: 645 SQ---VTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS-EVSSSSEVS 700
Query: 485 SPRQVLLDKRDDLVASSVLVHPRSTQ 510
S QV+ ++V+SS V S++
Sbjct: 701 SSSQVI--SSSEVVSSSSEVVSSSSE 724
>TAIR|locus:2051099 [details] [associations]
symbol:AT2G33350 "AT2G33350" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 ProtClustDB:CLSN2680683 EMBL:AY600556 IPI:IPI00520380
RefSeq:NP_180893.2 UniGene:At.50819 EnsemblPlants:AT2G33350.1
GeneID:817898 KEGG:ath:AT2G33350 TAIR:At2g33350 InParanoid:Q6E267
OMA:GSEINKP PhylomeDB:Q6E267 Genevestigator:Q6E267 Uniprot:Q6E267
Length = 410
Score = 121 (47.7 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 622 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 673
N++ K R+ + +Y +K+ ER F KK++Y RK LA+ RPR+RG+F +
Sbjct: 301 NKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 352
Score = 40 (19.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 403 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNN 440
+S+V ++ I++K HSN + + N +NN
Sbjct: 43 SSEVTSTSNILEKSGSF----HSNTNTTTTTENSNNNN 76
Score = 39 (18.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 461 SEVSSTVNCLHSS-SFQPTKN 480
SEV+ST N L S SF N
Sbjct: 44 SEVTSTSNILEKSGSFHSNTN 64
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 107 (42.7 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 43 LVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK 102
+VL ++P L G+AL+ + + N PVIM++++ ++ K L GA D+LVKP
Sbjct: 50 MVLDRMLPGLDGLALIKSVRA--AGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSF 107
Query: 103 NELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVENSG 143
EL + + RR C + + + V +G
Sbjct: 108 QELLARVEALLRRPQDTQEATVLACRDLEMDLMRRKVTRAG 148
Score = 45 (20.9 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 271 TNRLDLGSSKLSEQIDRG 288
TN +D+ SKL QID G
Sbjct: 190 TNIVDVHISKLRRQIDEG 207
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 119 (46.9 bits), Expect = 0.00094, P = 0.00094
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 21 ITEATNGLQAWKILEDLTNHI-DLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
+T A NGLQA ++LE NH+ DLVL ++ MP + G+A +KI+ K +P+I +++
Sbjct: 480 VTIAENGLQAVELLEK--NHVFDLVLMDISMPIMDGIAA-TKILRDK-HIEIPIIALTAH 535
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNEL 105
+ C+ G D ++KPIR ++
Sbjct: 536 TAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 119 (46.9 bits), Expect = 0.00094, P = 0.00094
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 21 ITEATNGLQAWKILEDLTNHI-DLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78
+T A NGLQA ++LE NH+ DLVL ++ MP + G+A +KI+ K +P+I +++
Sbjct: 480 VTIAENGLQAVELLEK--NHVFDLVLMDISMPIMDGIAA-TKILRDK-HIEIPIIALTAH 535
Query: 79 DSMGLVFKCLSKGAVDFLVKPIRKNEL 105
+ C+ G D ++KPIR ++
Sbjct: 536 TAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>DICTYBASE|DDB_G0268012 [details] [associations]
symbol:DDB_G0268012 "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 dictyBase:DDB_G0268012 GO:GO:0006355 GO:GO:0035556
EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_647491.1
ProteinModelPortal:Q55FP2 EnsemblProtists:DDB0233892 GeneID:8616298
KEGG:ddi:DDB_G0268012 InParanoid:Q55FP2 OMA:DDHLFKP Uniprot:Q55FP2
Length = 382
Score = 90 (36.7 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG--VALLSKIMSHKTRKNLPVIMMSS 77
IT A NGLQA +E+ N D++L +V MP + G + + M R P+I +++
Sbjct: 34 ITLAENGLQAVNAVEN--NKYDIILMDVNMPIMGGKEATKIIREMQQSLRIKTPIIGLTT 91
Query: 78 LDSMGLVFKCLSKGAVDFLVKPIRKNEL 105
++ +C+ G D L KP + +L
Sbjct: 92 VERQ----ECIEAGMDDHLFKPCKFQQL 115
Score = 71 (30.1 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 383 FSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMD 442
F+ N +N+N NI S + N+ ++ + N + N ++N +NN +
Sbjct: 222 FNNNNNNNNINNNYN-NINSVNSQCNNNNCNNNNNNIYNNYYYNNNNNNNNNNNNNNNNN 280
Query: 443 MGSTTNNAFIKPAGLKNKSEVSSTVN 468
+ NN +K ++E++ VN
Sbjct: 281 NNNNNNNNNNNNNNIKTETEINFVVN 306
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.126 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 687 583 0.00082 120 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 621 (66 KB)
Total size of DFA: 315 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.26u 0.11s 56.37t Elapsed: 00:00:03
Total cpu time: 56.27u 0.11s 56.38t Elapsed: 00:00:03
Start: Thu May 9 15:14:05 2013 End: Thu May 9 15:14:08 2013