Query 005631
Match_columns 687
No_of_seqs 446 out of 2066
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 11:21:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2204 AtoC Response regulato 100.0 2.5E-40 5.4E-45 364.4 18.8 202 4-243 15-217 (464)
2 PRK10923 glnG nitrogen regulat 99.9 9E-25 2E-29 243.2 18.3 200 4-243 14-214 (469)
3 TIGR02915 PEP_resp_reg putativ 99.9 1.9E-24 4.1E-29 238.9 17.0 198 7-243 12-215 (445)
4 PRK11361 acetoacetate metaboli 99.9 6.5E-24 1.4E-28 235.0 17.3 203 5-243 16-219 (457)
5 PRK15115 response regulator Gl 99.9 1E-23 2.2E-28 233.0 17.4 194 5-244 17-211 (444)
6 TIGR01818 ntrC nitrogen regula 99.9 2.3E-23 5E-28 231.2 18.3 199 5-242 10-209 (463)
7 PRK10365 transcriptional regul 99.9 1.1E-22 2.4E-27 224.1 15.6 198 5-243 17-215 (441)
8 COG0745 OmpR Response regulato 99.7 1.2E-17 2.7E-22 171.2 14.6 110 4-118 11-121 (229)
9 COG3604 FhlA Transcriptional r 99.7 4.4E-19 9.6E-24 194.8 3.4 80 159-243 220-299 (550)
10 COG3829 RocR Transcriptional r 99.7 1.4E-18 3.1E-23 193.0 3.2 78 161-243 244-321 (560)
11 PF06203 CCT: CCT motif; Inte 99.7 1.9E-18 4.1E-23 132.8 2.7 45 632-676 1-45 (45)
12 COG4566 TtrR Response regulato 99.7 9.2E-17 2E-21 158.0 11.8 110 4-118 15-125 (202)
13 COG4753 Response regulator con 99.7 2.3E-16 4.9E-21 175.0 14.0 103 13-119 23-126 (475)
14 COG4565 CitB Response regulato 99.7 4.3E-16 9.3E-21 155.9 13.7 108 10-121 18-126 (224)
15 PF00072 Response_reg: Respons 99.6 9.9E-15 2.1E-19 129.3 15.0 103 4-110 9-112 (112)
16 PRK15424 propionate catabolism 99.5 2.1E-14 4.6E-19 163.4 11.5 77 161-242 218-302 (538)
17 COG2197 CitB Response regulato 99.5 2E-13 4.2E-18 138.4 15.6 110 2-115 10-120 (211)
18 COG3437 Response regulator con 99.5 8.2E-14 1.8E-18 148.7 11.4 109 5-116 26-136 (360)
19 PRK10046 dpiA two-component re 99.5 8.3E-13 1.8E-17 133.5 16.5 110 5-118 16-127 (225)
20 PF00158 Sigma54_activat: Sigm 99.5 1.4E-14 3.1E-19 142.0 2.6 75 164-243 1-75 (168)
21 COG3706 PleD Response regulato 99.5 5.7E-13 1.2E-17 147.2 14.4 112 4-118 143-255 (435)
22 PRK10693 response regulator of 99.5 4.3E-13 9.2E-18 142.6 12.8 142 23-168 2-175 (303)
23 TIGR02329 propionate_PrpR prop 99.5 4.5E-13 9.7E-18 152.5 13.5 134 82-242 154-287 (526)
24 COG0784 CheY FOG: CheY-like re 99.4 2.2E-12 4.7E-17 117.1 15.1 106 4-114 16-125 (130)
25 PLN03029 type-a response regul 99.4 3.3E-12 7.1E-17 130.1 15.4 112 4-116 19-149 (222)
26 PRK10816 DNA-binding transcrip 99.4 3.7E-12 7.9E-17 126.1 15.4 106 5-115 12-118 (223)
27 PRK10529 DNA-binding transcrip 99.4 4.3E-12 9.4E-17 125.6 15.4 106 5-116 13-119 (225)
28 PRK11173 two-component respons 99.4 4E-12 8.6E-17 127.7 15.3 106 5-116 15-121 (237)
29 COG4567 Response regulator con 99.4 1.3E-12 2.9E-17 124.5 10.4 103 5-112 21-124 (182)
30 PRK09836 DNA-binding transcrip 99.4 5.7E-12 1.2E-16 125.1 15.5 106 5-115 12-118 (227)
31 PRK10766 DNA-binding transcrip 99.4 6.4E-12 1.4E-16 124.0 15.2 107 5-117 14-121 (221)
32 PRK10643 DNA-binding transcrip 99.4 7.7E-12 1.7E-16 122.5 15.7 107 5-116 12-119 (222)
33 PRK10161 transcriptional regul 99.4 7.8E-12 1.7E-16 124.3 15.6 108 5-115 14-122 (229)
34 TIGR02154 PhoB phosphate regul 99.4 9.9E-12 2.1E-16 121.9 15.1 108 5-115 14-122 (226)
35 PRK09468 ompR osmolarity respo 99.4 9.3E-12 2E-16 124.8 15.0 106 5-115 17-123 (239)
36 PRK10430 DNA-binding transcrip 99.4 1.6E-11 3.4E-16 125.2 16.4 111 5-117 13-125 (239)
37 PRK10336 DNA-binding transcrip 99.4 1.4E-11 2.9E-16 120.8 15.4 107 5-116 12-119 (219)
38 TIGR03787 marine_sort_RR prote 99.4 1.7E-11 3.7E-16 121.4 15.8 107 5-116 12-121 (227)
39 COG3947 Response regulator con 99.3 2.3E-12 5E-17 134.1 9.3 107 4-117 11-118 (361)
40 PRK10701 DNA-binding transcrip 99.3 1.8E-11 3.9E-16 123.0 15.4 106 5-116 13-119 (240)
41 PRK11475 DNA-binding transcrip 99.3 9.7E-12 2.1E-16 125.9 13.4 106 6-115 3-115 (207)
42 TIGR01387 cztR_silR_copR heavy 99.3 2E-11 4.4E-16 119.3 15.2 107 5-116 10-117 (218)
43 PRK13856 two-component respons 99.3 2E-11 4.3E-16 123.3 15.4 106 5-116 13-120 (241)
44 PRK12555 chemotaxis-specific m 99.3 3E-11 6.6E-16 129.9 17.3 164 4-221 11-187 (337)
45 COG3283 TyrR Transcriptional r 99.3 4.2E-13 9E-18 142.9 2.3 58 182-244 224-281 (511)
46 PRK11083 DNA-binding response 99.3 2.5E-11 5.4E-16 119.4 14.7 106 5-115 15-121 (228)
47 TIGR02875 spore_0_A sporulatio 99.3 3E-11 6.5E-16 124.3 15.6 108 6-115 15-124 (262)
48 PRK11517 transcriptional regul 99.3 3.2E-11 7E-16 118.7 15.1 105 5-115 12-117 (223)
49 PRK10841 hybrid sensory kinase 99.3 2.1E-11 4.5E-16 147.6 16.5 108 4-116 812-920 (924)
50 CHL00148 orf27 Ycf27; Reviewed 99.3 3.9E-11 8.4E-16 119.5 15.6 106 5-116 18-124 (240)
51 PRK09958 DNA-binding transcrip 99.3 4E-11 8.7E-16 116.6 15.3 107 5-115 12-119 (204)
52 PRK10955 DNA-binding transcrip 99.3 3.3E-11 7.1E-16 119.4 14.9 105 5-116 13-118 (232)
53 PRK11107 hybrid sensory histid 99.3 1.9E-11 4.1E-16 146.0 15.1 109 4-115 678-787 (919)
54 PRK10840 transcriptional regul 99.3 4.9E-11 1.1E-15 119.2 15.5 106 5-114 15-125 (216)
55 COG1221 PspF Transcriptional r 99.3 7.8E-13 1.7E-17 144.9 2.7 78 161-243 77-155 (403)
56 PRK09581 pleD response regulat 99.3 1.2E-11 2.6E-16 134.7 12.0 106 6-115 168-274 (457)
57 TIGR02974 phageshock_pspF psp 99.3 1.1E-12 2.3E-17 141.6 3.2 74 164-242 1-74 (329)
58 PRK09483 response regulator; P 99.3 6.6E-11 1.4E-15 116.2 15.2 107 5-115 13-121 (217)
59 PRK14084 two-component respons 99.3 6.9E-11 1.5E-15 120.0 15.4 106 5-116 12-119 (246)
60 PRK15347 two component system 99.3 4E-11 8.7E-16 143.4 15.6 109 4-115 701-812 (921)
61 KOG0519 Sensory transduction h 99.3 2E-11 4.4E-16 145.1 12.3 107 4-113 677-784 (786)
62 PRK00742 chemotaxis-specific m 99.3 2.8E-10 6E-15 123.2 19.8 92 5-101 15-110 (354)
63 PRK09935 transcriptional regul 99.3 1.3E-10 2.8E-15 112.9 15.4 107 5-115 15-123 (210)
64 PRK11697 putative two-componen 99.2 1.4E-10 3.1E-15 116.7 14.9 104 5-115 13-118 (238)
65 TIGR02956 TMAO_torS TMAO reduc 99.2 1E-10 2.2E-15 140.9 15.7 108 4-114 713-822 (968)
66 PRK11466 hybrid sensory histid 99.2 9.1E-11 2E-15 140.7 14.9 108 4-115 692-800 (914)
67 PRK11608 pspF phage shock prot 99.2 4.6E-12 1E-16 136.4 3.3 77 162-243 6-82 (326)
68 PRK10710 DNA-binding transcrip 99.2 2.5E-10 5.4E-15 113.7 15.3 106 5-116 22-128 (240)
69 PRK10610 chemotaxis regulatory 99.2 5.2E-10 1.1E-14 97.3 15.5 110 5-116 17-127 (129)
70 PRK10360 DNA-binding transcrip 99.2 2.4E-10 5.3E-15 110.5 14.5 102 6-114 14-117 (196)
71 PRK09581 pleD response regulat 99.2 3E-10 6.5E-15 123.9 16.2 109 5-116 14-123 (457)
72 PRK15479 transcriptional regul 99.2 4.2E-10 9.1E-15 110.2 15.6 106 6-116 13-119 (221)
73 COG3284 AcoR Transcriptional a 99.2 7.1E-12 1.5E-16 142.0 2.7 73 166-244 317-389 (606)
74 PRK09959 hybrid sensory histid 99.2 2.3E-10 4.9E-15 141.3 15.6 107 4-115 969-1076(1197)
75 PRK05022 anaerobic nitric oxid 99.2 1.1E-11 2.4E-16 140.8 3.0 77 162-243 187-263 (509)
76 PRK11091 aerobic respiration c 99.2 3E-10 6.6E-15 134.4 15.2 108 4-115 536-645 (779)
77 PRK09390 fixJ response regulat 99.1 5.7E-10 1.2E-14 106.5 12.7 107 5-116 15-122 (202)
78 PRK10651 transcriptional regul 99.1 1.3E-09 2.9E-14 105.8 15.0 105 6-114 19-125 (216)
79 PRK13435 response regulator; P 99.1 1.3E-09 2.8E-14 101.6 14.3 106 5-118 17-124 (145)
80 PRK10820 DNA-binding transcrip 99.1 2.6E-11 5.7E-16 138.2 3.3 77 162-243 204-280 (520)
81 PRK10403 transcriptional regul 99.1 1.8E-09 3.9E-14 104.6 15.4 105 6-114 19-125 (215)
82 PRK11388 DNA-binding transcrip 99.1 2.6E-11 5.7E-16 141.2 3.0 77 161-242 324-400 (638)
83 PRK15369 two component system 99.1 2E-09 4.4E-14 103.2 15.1 105 6-114 16-122 (211)
84 TIGR01817 nifA Nif-specific re 99.1 4.2E-11 9.1E-16 136.8 3.1 78 161-243 195-272 (534)
85 COG2201 CheB Chemotaxis respon 99.1 7E-10 1.5E-14 119.8 11.6 94 3-101 11-108 (350)
86 PRK10100 DNA-binding transcrip 99.1 9.5E-10 2.1E-14 112.1 11.3 102 5-115 22-127 (216)
87 COG3707 AmiR Response regulato 99.0 1.5E-09 3.3E-14 107.8 11.4 110 4-118 16-126 (194)
88 PRK13558 bacterio-opsin activa 99.0 1.7E-09 3.6E-14 125.9 13.1 106 5-115 19-127 (665)
89 cd00156 REC Signal receiver do 99.0 9.2E-09 2E-13 85.0 12.6 102 6-112 10-112 (113)
90 PRK15429 formate hydrogenlyase 99.0 2.2E-10 4.7E-15 134.7 3.1 77 162-243 376-452 (686)
91 PRK09191 two-component respons 98.9 1.1E-08 2.5E-13 104.3 14.2 105 5-116 149-255 (261)
92 PRK15411 rcsA colanic acid cap 98.9 2.4E-08 5.1E-13 101.0 13.3 107 4-115 11-123 (207)
93 PRK13557 histidine kinase; Pro 98.8 7.1E-08 1.5E-12 107.6 13.7 106 5-114 427-534 (540)
94 PRK13837 two-component VirA-li 98.8 8.7E-08 1.9E-12 115.0 15.0 108 4-116 708-815 (828)
95 COG3279 LytT Response regulato 98.6 9.4E-08 2E-12 99.3 9.6 105 5-115 14-119 (244)
96 PF14532 Sigma54_activ_2: Sigm 98.6 2E-08 4.3E-13 94.7 2.1 67 166-237 2-68 (138)
97 PRK15029 arginine decarboxylas 98.3 6E-06 1.3E-10 98.0 13.3 109 4-117 19-135 (755)
98 COG3706 PleD Response regulato 98.0 6.4E-06 1.4E-10 91.9 5.0 88 21-114 15-103 (435)
99 PRK11107 hybrid sensory histid 97.4 0.00093 2E-08 80.5 12.8 103 4-113 547-650 (919)
100 TIGR02902 spore_lonB ATP-depen 97.1 0.00021 4.6E-09 82.3 2.4 71 163-240 66-145 (531)
101 COG4650 RtcR Sigma54-dependent 96.8 0.00068 1.5E-08 72.0 2.5 73 166-243 183-264 (531)
102 TIGR02640 gas_vesic_GvpN gas v 96.4 0.0015 3.2E-08 68.6 1.6 50 182-242 18-67 (262)
103 TIGR02903 spore_lon_C ATP-depe 96.2 0.0023 5.1E-08 75.1 2.6 75 160-241 152-235 (615)
104 PF03709 OKR_DC_1_N: Orn/Lys/A 95.8 0.075 1.6E-06 49.2 9.9 103 9-115 9-114 (115)
105 PF09425 CCT_2: Divergent CCT 95.7 0.0059 1.3E-07 42.6 1.5 25 630-655 2-26 (27)
106 PTZ00111 DNA replication licen 95.5 0.0078 1.7E-07 72.8 2.7 44 182-230 489-536 (915)
107 PRK13531 regulatory ATPase Rav 95.4 0.0075 1.6E-07 68.7 2.3 56 176-242 30-86 (498)
108 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.012 2.6E-07 59.3 2.7 47 182-233 35-81 (226)
109 PRK10865 protein disaggregatio 95.1 0.01 2.2E-07 72.3 2.2 48 188-240 601-648 (857)
110 TIGR03815 CpaE_hom_Actino heli 94.8 0.11 2.5E-06 55.9 8.8 80 21-112 4-85 (322)
111 KOG1601 GATA-4/5/6 transcripti 94.6 0.014 3.1E-07 59.4 1.2 42 628-669 289-330 (340)
112 cd02071 MM_CoA_mut_B12_BD meth 94.5 0.94 2E-05 42.1 13.0 101 6-110 16-121 (122)
113 TIGR00640 acid_CoA_mut_C methy 94.4 1.3 2.8E-05 42.2 13.9 106 5-114 18-128 (132)
114 TIGR03346 chaperone_ClpB ATP-d 94.3 0.024 5.1E-07 69.2 2.6 49 188-240 597-645 (852)
115 PHA02244 ATPase-like protein 94.3 0.025 5.4E-07 62.6 2.3 53 165-221 99-151 (383)
116 TIGR02880 cbbX_cfxQ probable R 94.2 0.03 6.4E-07 59.7 2.8 46 187-242 60-109 (284)
117 CHL00081 chlI Mg-protoporyphyr 94.1 0.022 4.8E-07 62.6 1.5 27 186-213 39-65 (350)
118 TIGR02442 Cob-chelat-sub cobal 94.0 0.042 9E-07 65.0 3.5 26 185-211 25-50 (633)
119 TIGR02031 BchD-ChlD magnesium 93.6 0.036 7.8E-07 65.0 2.1 44 187-241 18-61 (589)
120 PRK02261 methylaspartate mutas 93.2 1.8 3.8E-05 41.6 12.7 104 7-114 21-135 (137)
121 CHL00195 ycf46 Ycf46; Provisio 93.2 0.19 4.1E-06 57.8 7.0 39 183-229 257-295 (489)
122 smart00350 MCM minichromosome 92.8 0.051 1.1E-06 62.6 1.7 49 182-234 233-281 (509)
123 PF06490 FleQ: Flagellar regul 92.8 0.78 1.7E-05 42.1 9.2 96 4-112 10-107 (109)
124 PRK08903 DnaA regulatory inact 92.6 0.066 1.4E-06 54.4 2.1 45 183-232 40-84 (227)
125 cd02067 B12-binding B12 bindin 92.6 1.1 2.5E-05 40.9 10.1 87 7-98 17-109 (119)
126 cd04728 ThiG Thiazole synthase 92.5 1.3 2.9E-05 46.5 11.5 101 11-117 117-228 (248)
127 PRK00208 thiG thiazole synthas 92.3 1.5 3.3E-05 46.2 11.5 101 11-117 117-228 (250)
128 TIGR00382 clpX endopeptidase C 92.0 0.09 2E-06 59.1 2.4 48 185-244 116-163 (413)
129 PRK05342 clpX ATP-dependent pr 92.0 0.088 1.9E-06 59.2 2.2 39 185-231 108-146 (412)
130 TIGR01501 MthylAspMutase methy 91.7 3.7 8.1E-05 39.4 12.6 104 7-114 19-133 (134)
131 PRK00043 thiE thiamine-phospha 91.2 4.9 0.00011 40.1 13.7 91 16-112 103-207 (212)
132 PRK03992 proteasome-activating 90.7 0.16 3.5E-06 56.5 2.7 40 183-230 163-202 (389)
133 smart00448 REC cheY-homologous 89.8 1.5 3.2E-05 30.5 6.3 42 6-50 13-55 (55)
134 CHL00181 cbbX CbbX; Provisiona 89.0 0.31 6.8E-06 52.1 3.1 33 188-221 62-98 (287)
135 PRK11034 clpA ATP-dependent Cl 88.8 0.74 1.6E-05 55.8 6.4 46 189-241 491-536 (758)
136 TIGR02639 ClpA ATP-dependent C 88.3 1.3 2.8E-05 53.4 8.1 47 188-241 486-532 (731)
137 PRK12704 phosphodiesterase; Pr 88.3 0.74 1.6E-05 53.4 5.8 49 68-116 248-298 (520)
138 cd00009 AAA The AAA+ (ATPases 88.3 0.41 8.9E-06 43.0 3.0 46 185-235 19-64 (151)
139 TIGR02881 spore_V_K stage V sp 84.5 0.72 1.6E-05 48.3 2.8 38 187-229 44-85 (261)
140 PRK01130 N-acetylmannosamine-6 84.5 14 0.00031 37.6 12.2 77 16-98 118-202 (221)
141 CHL00176 ftsH cell division pr 84.1 0.61 1.3E-05 55.4 2.3 41 183-231 214-254 (638)
142 cd02072 Glm_B12_BD B12 binding 83.9 26 0.00056 33.5 12.7 100 7-110 17-127 (128)
143 TIGR00368 Mg chelatase-related 83.8 0.71 1.5E-05 53.3 2.7 48 182-234 208-280 (499)
144 PF02310 B12-binding: B12 bind 83.6 13 0.00028 33.6 10.4 87 7-98 18-111 (121)
145 TIGR03151 enACPred_II putative 83.1 12 0.00026 40.5 11.6 82 11-98 103-190 (307)
146 PRK09426 methylmalonyl-CoA mut 83.0 14 0.0003 44.8 12.9 106 5-114 598-708 (714)
147 cd04724 Tryptophan_synthase_al 82.7 12 0.00025 39.2 10.9 79 29-112 18-125 (242)
148 CHL00162 thiG thiamin biosynth 82.3 24 0.00051 37.7 12.7 100 10-116 130-241 (267)
149 PRK13765 ATP-dependent proteas 82.0 0.36 7.8E-06 57.2 -0.7 36 197-242 164-199 (637)
150 PTZ00361 26 proteosome regulat 81.9 0.96 2.1E-05 51.4 2.7 35 183-221 215-249 (438)
151 PRK11840 bifunctional sulfur c 81.7 11 0.00024 41.3 10.6 98 11-115 191-300 (326)
152 TIGR00343 pyridoxal 5'-phospha 81.1 21 0.00046 38.5 12.1 94 17-116 114-251 (287)
153 cd02070 corrinoid_protein_B12- 80.9 14 0.00031 37.3 10.5 86 7-97 100-190 (201)
154 PF05690 ThiG: Thiazole biosyn 80.9 18 0.00039 38.1 11.2 99 9-114 115-225 (247)
155 TIGR01242 26Sp45 26S proteasom 80.6 1.3 2.9E-05 48.6 3.2 33 185-221 156-188 (364)
156 PF07728 AAA_5: AAA domain (dy 80.6 0.59 1.3E-05 43.5 0.4 46 187-243 1-46 (139)
157 PRK04180 pyridoxal biosynthesi 80.3 17 0.00037 39.3 11.2 94 17-116 121-257 (293)
158 smart00382 AAA ATPases associa 80.2 1.4 3.1E-05 38.8 2.7 33 188-221 5-37 (148)
159 PLN02591 tryptophan synthase 80.2 14 0.00031 39.0 10.6 79 30-113 21-128 (250)
160 KOG0729 26S proteasome regulat 80.0 1.2 2.7E-05 47.5 2.5 36 182-221 208-243 (435)
161 PRK15399 lysine decarboxylase 79.6 13 0.00028 44.9 11.1 103 9-118 22-126 (713)
162 PRK13342 recombination factor 79.0 1.1 2.5E-05 50.1 2.0 37 181-221 32-68 (413)
163 cd00452 KDPG_aldolase KDPG and 78.6 16 0.00034 36.5 9.9 78 15-99 95-172 (190)
164 PTZ00454 26S protease regulato 78.1 1.7 3.6E-05 48.9 3.0 35 183-221 177-211 (398)
165 PRK15400 lysine decarboxylase 77.7 15 0.00032 44.5 10.8 103 9-118 22-126 (714)
166 cd04727 pdxS PdxS is a subunit 77.6 41 0.00088 36.4 12.9 103 8-116 103-248 (283)
167 PRK13341 recombination factor 77.1 1.3 2.7E-05 53.5 1.8 40 178-221 45-84 (725)
168 TIGR03345 VI_ClpV1 type VI sec 76.7 1.7 3.6E-05 53.4 2.8 51 187-241 597-647 (852)
169 cd00227 CPT Chloramphenicol (C 76.3 1.6 3.4E-05 42.8 1.9 31 188-221 4-34 (175)
170 PRK13111 trpA tryptophan synth 76.2 24 0.00053 37.4 10.9 85 24-112 22-138 (258)
171 cd04730 NPD_like 2-Nitropropan 75.7 35 0.00075 34.8 11.7 79 14-98 99-185 (236)
172 PRK10128 2-keto-3-deoxy-L-rham 75.4 36 0.00077 36.4 11.9 82 27-111 28-111 (267)
173 PF04131 NanE: Putative N-acet 75.4 35 0.00076 34.9 11.2 86 6-99 82-174 (192)
174 cd00331 IGPS Indole-3-glycerol 75.2 48 0.001 33.6 12.5 79 14-97 118-200 (217)
175 PRK05458 guanosine 5'-monophos 75.1 9 0.00019 42.1 7.5 66 27-96 99-166 (326)
176 cd00564 TMP_TenI Thiamine mono 75.0 25 0.00053 34.2 10.0 75 17-98 95-178 (196)
177 TIGR00262 trpA tryptophan synt 74.9 28 0.00061 36.8 11.0 84 25-112 21-136 (256)
178 cd04723 HisA_HisF Phosphoribos 74.8 15 0.00033 38.1 8.8 66 26-97 147-217 (233)
179 cd04729 NanE N-acetylmannosami 74.7 39 0.00084 34.4 11.7 85 8-98 114-206 (219)
180 TIGR02370 pyl_corrinoid methyl 74.7 20 0.00043 36.3 9.4 86 7-97 102-192 (197)
181 COG2185 Sbm Methylmalonyl-CoA 74.3 59 0.0013 31.8 12.0 105 6-114 29-138 (143)
182 PRK00994 F420-dependent methyl 74.0 22 0.00047 37.5 9.5 92 4-102 18-119 (277)
183 PF00004 AAA: ATPase family as 73.8 1.8 3.9E-05 39.1 1.6 35 188-230 1-35 (132)
184 TIGR00007 phosphoribosylformim 73.7 39 0.00084 34.5 11.5 67 26-97 146-217 (230)
185 TIGR00693 thiE thiamine-phosph 73.6 24 0.00052 34.9 9.7 73 19-97 98-179 (196)
186 TIGR03239 GarL 2-dehydro-3-deo 73.6 42 0.0009 35.4 11.8 83 26-111 21-105 (249)
187 PF01408 GFO_IDH_MocA: Oxidore 72.5 50 0.0011 29.6 10.7 92 8-114 15-111 (120)
188 TIGR01241 FtsH_fam ATP-depende 72.2 2.4 5.2E-05 48.7 2.4 39 183-229 86-124 (495)
189 PRK00748 1-(5-phosphoribosyl)- 72.1 20 0.00043 36.5 8.9 67 26-97 147-219 (233)
190 PRK10558 alpha-dehydro-beta-de 72.0 29 0.00062 36.8 10.2 82 27-111 29-112 (256)
191 PF03060 NMO: Nitronate monoox 72.0 29 0.00062 37.9 10.6 81 11-97 130-218 (330)
192 cd02068 radical_SAM_B12_BD B12 72.0 34 0.00074 31.6 9.7 100 7-110 6-108 (127)
193 PHA02544 44 clamp loader, smal 71.1 2 4.3E-05 45.8 1.3 32 186-221 44-75 (316)
194 COG1222 RPT1 ATP-dependent 26S 70.9 3.1 6.7E-05 46.2 2.7 35 183-221 183-217 (406)
195 cd04722 TIM_phosphate_binding 70.6 38 0.00082 32.3 10.0 85 8-97 104-198 (200)
196 PRK09140 2-dehydro-3-deoxy-6-p 70.1 46 0.00099 34.1 10.9 94 10-108 4-99 (206)
197 COG0467 RAD55 RecA-superfamily 69.7 2.2 4.8E-05 44.5 1.3 53 187-244 25-78 (260)
198 TIGR01243 CDC48 AAA family ATP 69.6 2.9 6.2E-05 50.5 2.4 40 183-230 210-249 (733)
199 CHL00200 trpA tryptophan synth 69.4 32 0.0007 36.6 9.9 83 25-112 26-140 (263)
200 KOG4175 Tryptophan synthase al 69.3 26 0.00057 36.2 8.6 83 27-114 34-145 (268)
201 cd02069 methionine_synthase_B1 68.6 31 0.00067 35.5 9.3 88 6-97 105-200 (213)
202 PF13207 AAA_17: AAA domain; P 68.3 2.2 4.8E-05 38.4 0.8 19 188-207 2-20 (121)
203 TIGR01650 PD_CobS cobaltochela 68.2 3 6.6E-05 45.7 2.0 50 183-243 62-111 (327)
204 PF07724 AAA_2: AAA domain (Cd 67.9 2.6 5.7E-05 41.7 1.3 40 188-231 5-45 (171)
205 KOG0731 AAA+-type ATPase conta 67.8 3.7 8E-05 49.6 2.7 63 155-221 304-376 (774)
206 PRK07261 topology modulation p 67.5 2.9 6.3E-05 41.1 1.6 30 188-221 3-32 (171)
207 PRK07695 transcriptional regul 67.4 74 0.0016 31.9 11.7 72 17-95 95-174 (201)
208 PF01078 Mg_chelatase: Magnesi 67.3 3.7 8E-05 42.3 2.3 28 183-211 20-47 (206)
209 cd02065 B12-binding_like B12 b 67.1 22 0.00047 32.2 7.1 68 7-78 17-89 (125)
210 TIGR01037 pyrD_sub1_fam dihydr 67.0 96 0.0021 33.1 13.1 59 55-116 223-287 (300)
211 PF01583 APS_kinase: Adenylyls 66.9 2.7 5.8E-05 41.4 1.1 33 188-221 5-37 (156)
212 COG4170 SapD ABC-type antimicr 66.7 2.9 6.4E-05 43.4 1.4 17 192-208 39-55 (330)
213 PRK11034 clpA ATP-dependent Cl 66.6 3.2 7E-05 50.4 2.0 38 183-221 205-242 (758)
214 PF01729 QRPTase_C: Quinolinat 66.5 46 0.001 33.1 9.8 70 20-96 83-153 (169)
215 PRK13587 1-(5-phosphoribosyl)- 66.4 32 0.00069 35.8 9.0 65 28-97 151-220 (234)
216 PRK05848 nicotinate-nucleotide 66.2 58 0.0013 35.0 11.1 83 7-97 170-256 (273)
217 COG2022 ThiG Uncharacterized e 65.9 46 0.00099 35.2 9.8 98 9-113 122-231 (262)
218 PF13671 AAA_33: AAA domain; P 65.7 2.5 5.4E-05 39.1 0.7 21 191-211 4-24 (143)
219 TIGR01243 CDC48 AAA family ATP 65.5 4.4 9.5E-05 48.9 2.8 35 183-221 485-519 (733)
220 TIGR02311 HpaI 2,4-dihydroxyhe 65.1 86 0.0019 33.0 12.0 84 25-111 20-105 (249)
221 COG1223 Predicted ATPase (AAA+ 64.8 5.3 0.00012 42.8 2.9 59 159-221 118-183 (368)
222 cd01120 RecA-like_NTPases RecA 64.7 3.5 7.6E-05 38.1 1.5 33 188-221 2-34 (165)
223 PRK12402 replication factor C 64.6 5.7 0.00012 42.4 3.2 34 187-221 38-73 (337)
224 TIGR00735 hisF imidazoleglycer 64.1 75 0.0016 33.3 11.3 79 27-110 157-247 (254)
225 PF13238 AAA_18: AAA domain; P 63.4 3 6.5E-05 37.5 0.7 22 188-210 1-22 (129)
226 TIGR00679 hpr-ser Hpr(Ser) kin 63.1 35 0.00075 37.3 8.7 31 186-221 147-177 (304)
227 TIGR00734 hisAF_rel hisA/hisF 63.0 41 0.00089 34.7 9.0 67 26-97 142-212 (221)
228 PRK00278 trpC indole-3-glycero 62.6 93 0.002 32.9 11.8 86 6-97 150-239 (260)
229 TIGR02030 BchI-ChlI magnesium 62.6 4.6 9.9E-05 44.5 2.1 26 185-211 25-50 (337)
230 KOG1601 GATA-4/5/6 transcripti 61.9 1.1 2.3E-05 45.7 -2.9 71 39-109 62-133 (340)
231 COG0529 CysC Adenylylsulfate k 61.5 4.3 9.2E-05 41.2 1.4 27 188-214 25-51 (197)
232 TIGR01313 therm_gnt_kin carboh 61.1 5.6 0.00012 38.1 2.1 27 192-221 4-30 (163)
233 COG3836 HpcH 2,4-dihydroxyhept 61.0 42 0.00091 35.5 8.5 97 9-109 8-108 (255)
234 PRK00131 aroK shikimate kinase 61.0 4.5 9.9E-05 38.5 1.5 30 188-221 7-36 (175)
235 PRK06843 inosine 5-monophospha 60.8 33 0.00073 38.8 8.4 55 39-96 164-220 (404)
236 PRK06762 hypothetical protein; 60.8 4.4 9.6E-05 38.9 1.4 31 188-221 4-34 (166)
237 PRK02083 imidazole glycerol ph 60.7 85 0.0019 32.7 11.0 80 26-110 154-245 (253)
238 PRK05458 guanosine 5'-monophos 60.6 1.3E+02 0.0028 33.3 12.6 87 6-98 128-230 (326)
239 PLN02274 inosine-5'-monophosph 60.3 33 0.00071 39.9 8.5 67 26-97 248-316 (505)
240 TIGR02026 BchE magnesium-proto 60.3 80 0.0017 36.5 11.7 99 7-111 26-134 (497)
241 cd01124 KaiC KaiC is a circadi 60.3 4.4 9.5E-05 39.3 1.3 33 188-221 2-34 (187)
242 cd04732 HisA HisA. Phosphorib 60.0 49 0.0011 33.6 9.0 67 26-97 147-218 (234)
243 COG0159 TrpA Tryptophan syntha 59.5 73 0.0016 34.2 10.2 82 28-114 34-144 (265)
244 PRK06217 hypothetical protein; 59.1 6.4 0.00014 38.8 2.2 30 188-221 4-33 (183)
245 PF09936 Methyltrn_RNA_4: SAM- 59.0 28 0.00062 35.2 6.7 76 19-102 82-162 (185)
246 KOG0733 Nuclear AAA ATPase (VC 58.0 13 0.00029 44.0 4.7 35 183-221 543-577 (802)
247 TIGR00736 nifR3_rel_arch TIM-b 57.9 55 0.0012 34.3 8.9 65 29-97 152-219 (231)
248 COG2884 FtsE Predicted ATPase 57.3 5.7 0.00012 40.8 1.5 37 183-221 26-62 (223)
249 COG2256 MGS1 ATPase related to 57.2 7.8 0.00017 43.7 2.7 44 176-223 39-82 (436)
250 PRK08118 topology modulation p 57.2 5.4 0.00012 39.1 1.3 30 188-221 4-33 (167)
251 cd00331 IGPS Indole-3-glycerol 56.5 93 0.002 31.5 10.2 67 43-112 48-117 (217)
252 PF13191 AAA_16: AAA ATPase do 56.5 3.5 7.6E-05 39.6 -0.1 40 185-229 24-63 (185)
253 KOG0734 AAA+-type ATPase conta 56.5 6.1 0.00013 46.0 1.7 35 183-221 335-369 (752)
254 PRK08533 flagellar accessory p 56.1 7 0.00015 40.4 2.0 54 185-244 24-79 (230)
255 PF04131 NanE: Putative N-acet 56.1 33 0.00072 35.0 6.7 70 16-97 44-117 (192)
256 PF13555 AAA_29: P-loop contai 55.9 6.6 0.00014 32.9 1.4 19 188-207 26-44 (62)
257 cd02027 APSK Adenosine 5'-phos 55.7 5.8 0.00013 38.0 1.2 31 191-221 4-34 (149)
258 COG3010 NanE Putative N-acetyl 55.4 2.5E+02 0.0055 29.3 12.8 92 13-111 123-224 (229)
259 PRK04328 hypothetical protein; 55.3 6.4 0.00014 41.1 1.6 54 185-243 23-77 (249)
260 PRK10733 hflB ATP-dependent me 55.0 7.3 0.00016 46.5 2.2 38 185-230 185-222 (644)
261 PF13401 AAA_22: AAA domain; P 54.5 3.1 6.8E-05 37.8 -0.8 38 188-230 7-49 (131)
262 PRK00889 adenylylsulfate kinas 54.3 6.1 0.00013 38.4 1.1 34 188-221 6-39 (175)
263 cd01130 VirB11-like_ATPase Typ 54.2 5.7 0.00012 39.4 0.9 27 182-209 22-48 (186)
264 cd04733 OYE_like_2_FMN Old yel 54.0 1.4E+02 0.0029 32.7 11.7 91 4-97 201-320 (338)
265 PRK01033 imidazole glycerol ph 53.9 71 0.0015 33.6 9.1 67 26-97 153-225 (258)
266 PRK04302 triosephosphate isome 53.8 1.7E+02 0.0037 30.0 11.7 81 14-99 111-203 (223)
267 TIGR02322 phosphon_PhnN phosph 53.7 7 0.00015 38.0 1.5 21 188-209 4-24 (179)
268 COG0714 MoxR-like ATPases [Gen 53.6 7.3 0.00016 42.2 1.7 53 181-244 39-91 (329)
269 COG4999 Uncharacterized domain 53.3 19 0.00042 34.2 4.2 94 7-109 25-121 (140)
270 COG4608 AppF ABC-type oligopep 53.2 5.9 0.00013 42.3 0.9 28 183-211 37-64 (268)
271 PRK07259 dihydroorotate dehydr 53.1 1.6E+02 0.0035 31.4 11.9 57 55-114 223-285 (301)
272 PF14606 Lipase_GDSL_3: GDSL-l 52.9 42 0.0009 33.9 6.8 91 13-118 29-133 (178)
273 TIGR01305 GMP_reduct_1 guanosi 52.8 51 0.0011 36.5 8.0 56 40-98 121-178 (343)
274 PF05729 NACHT: NACHT domain 52.6 7.7 0.00017 36.2 1.5 18 188-206 3-20 (166)
275 PF03668 ATP_bind_2: P-loop AT 52.5 8.1 0.00018 41.7 1.8 38 188-237 3-40 (284)
276 PF00290 Trp_syntA: Tryptophan 52.4 51 0.0011 35.2 7.7 77 28-108 27-132 (259)
277 PRK05718 keto-hydroxyglutarate 52.3 1.9E+02 0.0041 29.9 11.7 90 11-107 10-102 (212)
278 PRK13125 trpA tryptophan synth 52.3 1.1E+02 0.0025 31.8 10.3 78 28-111 21-124 (244)
279 PRK05428 HPr kinase/phosphoryl 52.2 1E+02 0.0022 33.8 10.1 59 56-116 70-130 (308)
280 cd04726 KGPDC_HPS 3-Keto-L-gul 52.1 1.5E+02 0.0033 29.3 10.8 79 13-98 99-186 (202)
281 PF00977 His_biosynth: Histidi 52.1 51 0.0011 34.1 7.6 69 24-97 146-219 (229)
282 cd02019 NK Nucleoside/nucleoti 51.9 8.1 0.00018 32.2 1.4 21 188-209 2-22 (69)
283 COG0444 DppD ABC-type dipeptid 51.8 6.9 0.00015 42.8 1.1 27 184-211 30-56 (316)
284 PRK00440 rfc replication facto 51.7 10 0.00022 40.1 2.4 22 187-209 40-61 (319)
285 PF00910 RNA_helicase: RNA hel 51.7 7.9 0.00017 35.0 1.4 18 188-206 1-18 (107)
286 PRK09825 idnK D-gluconate kina 51.5 7.3 0.00016 38.6 1.2 21 188-209 6-26 (176)
287 cd01948 EAL EAL domain. This d 51.3 48 0.001 33.0 7.1 88 11-102 139-238 (240)
288 COG1124 DppF ABC-type dipeptid 51.1 7.5 0.00016 41.1 1.2 30 180-210 28-57 (252)
289 PRK05480 uridine/cytidine kina 51.1 8 0.00017 38.8 1.5 21 188-209 9-29 (209)
290 PRK03846 adenylylsulfate kinas 51.0 11 0.00024 37.7 2.4 37 184-221 23-59 (198)
291 PF13476 AAA_23: AAA domain; P 50.7 6.4 0.00014 38.1 0.7 20 188-208 22-41 (202)
292 cd02023 UMPK Uridine monophosp 50.6 8.1 0.00018 38.3 1.4 18 192-209 5-22 (198)
293 PF07931 CPT: Chloramphenicol 50.6 7 0.00015 39.1 0.9 31 188-221 3-33 (174)
294 KOG2028 ATPase related to the 50.3 16 0.00035 41.0 3.6 70 161-231 137-211 (554)
295 TIGR01302 IMP_dehydrog inosine 50.2 54 0.0012 37.5 8.0 64 27-96 226-291 (450)
296 TIGR00455 apsK adenylylsulfate 50.2 8.8 0.00019 37.7 1.6 34 188-221 20-53 (184)
297 PRK04128 1-(5-phosphoribosyl)- 49.9 1.4E+02 0.0031 31.0 10.4 68 25-98 30-102 (228)
298 TIGR00635 ruvB Holliday juncti 49.8 9.6 0.00021 40.4 1.9 22 186-208 31-52 (305)
299 cd02021 GntK Gluconate kinase 49.6 8.6 0.00019 36.2 1.3 29 189-221 3-31 (150)
300 PRK13948 shikimate kinase; Pro 49.4 9.6 0.00021 38.2 1.7 32 186-221 11-42 (182)
301 PRK05567 inosine 5'-monophosph 49.3 71 0.0015 36.9 8.9 64 28-96 230-295 (486)
302 cd04740 DHOD_1B_like Dihydroor 49.2 2.9E+02 0.0064 29.3 13.1 57 55-114 220-282 (296)
303 TIGR01360 aden_kin_iso1 adenyl 49.2 9.3 0.0002 37.0 1.6 22 186-207 3-24 (188)
304 PF01993 MTD: methylene-5,6,7, 49.2 34 0.00074 36.2 5.6 65 32-102 53-118 (276)
305 KOG0727 26S proteasome regulat 49.2 14 0.00031 39.4 3.0 35 183-221 187-221 (408)
306 KOG0730 AAA+-type ATPase [Post 49.0 10 0.00023 45.0 2.1 35 183-221 466-500 (693)
307 TIGR00763 lon ATP-dependent pr 48.9 9.4 0.0002 46.5 1.8 46 187-242 348-393 (775)
308 PF00478 IMPDH: IMP dehydrogen 48.8 58 0.0013 36.3 7.7 69 25-98 107-177 (352)
309 PF06309 Torsin: Torsin; Inte 48.5 12 0.00027 35.7 2.2 20 188-207 55-74 (127)
310 PRK13523 NADPH dehydrogenase N 48.2 1.4E+02 0.0031 32.8 10.7 69 26-97 225-303 (337)
311 PRK08233 hypothetical protein; 48.0 9.7 0.00021 36.7 1.4 20 188-208 6-25 (182)
312 smart00763 AAA_PrkA PrkA AAA d 48.0 11 0.00024 42.0 2.0 51 187-246 79-133 (361)
313 PRK00080 ruvB Holliday junctio 48.0 11 0.00024 40.8 2.0 23 186-209 52-74 (328)
314 COG1927 Mtd Coenzyme F420-depe 48.0 1.3E+02 0.0029 31.4 9.4 91 5-102 19-119 (277)
315 PF00485 PRK: Phosphoribulokin 47.9 8.2 0.00018 38.4 0.9 28 188-216 2-29 (194)
316 PF02581 TMP-TENI: Thiamine mo 47.8 1.4E+02 0.003 29.5 9.6 71 19-96 97-175 (180)
317 PRK14961 DNA polymerase III su 47.8 8.5 0.00018 42.5 1.1 45 160-206 14-58 (363)
318 TIGR01303 IMP_DH_rel_1 IMP deh 47.6 69 0.0015 37.1 8.4 69 23-96 222-292 (475)
319 TIGR03877 thermo_KaiC_1 KaiC d 47.5 9 0.00019 39.5 1.2 53 186-243 22-75 (237)
320 PRK06547 hypothetical protein; 47.4 10 0.00022 37.6 1.5 30 188-221 18-47 (172)
321 TIGR01618 phage_P_loop phage n 47.3 13 0.00028 38.7 2.3 23 183-206 10-32 (220)
322 PLN00020 ribulose bisphosphate 47.3 12 0.00025 42.2 2.1 31 187-221 150-180 (413)
323 PF06073 DUF934: Bacterial pro 47.2 1.6E+02 0.0035 27.5 9.2 68 40-109 19-89 (110)
324 PRK05541 adenylylsulfate kinas 47.1 9.4 0.0002 37.1 1.2 23 188-211 10-32 (176)
325 TIGR03689 pup_AAA proteasome A 47.0 11 0.00024 43.8 2.0 26 183-209 214-239 (512)
326 KOG0737 AAA+-type ATPase [Post 47.0 10 0.00022 42.2 1.6 48 184-244 126-173 (386)
327 cd00381 IMPDH IMPDH: The catal 47.0 80 0.0017 34.6 8.4 64 29-97 97-162 (325)
328 PRK07028 bifunctional hexulose 46.9 1.9E+02 0.0042 32.7 11.8 96 14-115 104-212 (430)
329 PRK09183 transposase/IS protei 46.8 10 0.00023 39.9 1.6 23 183-206 100-122 (259)
330 TIGR00390 hslU ATP-dependent p 46.7 10 0.00022 43.3 1.5 32 186-221 48-79 (441)
331 PF06745 KaiC: KaiC; InterPro 46.6 5.8 0.00013 40.2 -0.4 54 186-244 20-75 (226)
332 TIGR01334 modD putative molybd 46.6 99 0.0021 33.4 8.9 70 20-95 191-260 (277)
333 PRK05581 ribulose-phosphate 3- 46.4 2E+02 0.0044 28.8 10.8 83 13-98 105-198 (220)
334 KOG0921 Dosage compensation co 46.4 39 0.00084 41.9 6.2 62 28-89 481-545 (1282)
335 PRK10536 hypothetical protein; 46.4 10 0.00022 40.4 1.4 24 183-207 72-95 (262)
336 cd01918 HprK_C HprK/P, the bif 46.3 13 0.00029 36.3 2.1 31 186-221 15-45 (149)
337 TIGR01163 rpe ribulose-phospha 46.3 1.8E+02 0.0039 28.8 10.3 78 27-109 13-97 (210)
338 TIGR00235 udk uridine kinase. 46.2 9.9 0.00021 38.2 1.2 21 188-209 9-29 (207)
339 PRK08385 nicotinate-nucleotide 46.1 1.2E+02 0.0026 32.7 9.4 73 20-96 185-257 (278)
340 PRK00748 1-(5-phosphoribosyl)- 46.0 1.1E+02 0.0024 31.0 9.0 71 24-99 29-104 (233)
341 PRK07428 nicotinate-nucleotide 45.9 2E+02 0.0044 31.2 11.1 82 9-96 186-269 (288)
342 cd02809 alpha_hydroxyacid_oxid 45.7 2.4E+02 0.0052 30.3 11.7 87 8-98 163-256 (299)
343 COG1239 ChlI Mg-chelatase subu 45.6 11 0.00023 42.8 1.4 24 187-211 40-63 (423)
344 cd06346 PBP1_ABC_ligand_bindin 45.4 2.7E+02 0.0058 29.3 12.0 69 7-80 155-229 (312)
345 COG2070 Dioxygenases related t 45.3 1.3E+02 0.0029 33.2 9.9 78 12-94 122-209 (336)
346 cd04726 KGPDC_HPS 3-Keto-L-gul 45.3 1E+02 0.0023 30.4 8.4 72 25-100 10-86 (202)
347 PRK07896 nicotinate-nucleotide 45.2 2.1E+02 0.0045 31.1 11.1 70 20-95 202-271 (289)
348 PF01081 Aldolase: KDPG and KH 45.2 83 0.0018 32.2 7.7 90 11-105 3-94 (196)
349 TIGR03572 WbuZ glycosyl amidat 45.0 1.3E+02 0.0028 30.8 9.2 70 24-98 29-103 (232)
350 TIGR02928 orc1/cdc6 family rep 45.0 9.9 0.00022 41.2 1.1 41 184-229 39-85 (365)
351 PRK06696 uridine kinase; Valid 45.0 11 0.00024 38.4 1.4 21 188-209 25-45 (223)
352 PRK06067 flagellar accessory p 44.9 14 0.00029 37.9 2.0 53 187-244 27-80 (234)
353 PRK05201 hslU ATP-dependent pr 44.8 14 0.00029 42.3 2.1 32 186-221 51-82 (443)
354 PLN02274 inosine-5'-monophosph 44.6 2.3E+02 0.005 33.1 12.1 85 8-98 279-380 (505)
355 PF03215 Rad17: Rad17 cell cyc 44.6 13 0.00029 43.3 2.1 34 173-206 32-65 (519)
356 PRK07807 inosine 5-monophospha 44.5 64 0.0014 37.4 7.6 67 25-96 226-294 (479)
357 PRK00300 gmk guanylate kinase; 44.4 11 0.00023 37.5 1.2 23 188-211 8-30 (205)
358 TIGR03590 PseG pseudaminic aci 44.4 1.4E+02 0.0031 31.5 9.7 80 3-88 17-99 (279)
359 PRK13947 shikimate kinase; Pro 44.3 12 0.00027 35.9 1.5 31 187-221 3-33 (171)
360 TIGR02173 cyt_kin_arch cytidyl 44.1 12 0.00026 35.6 1.5 19 188-207 3-21 (171)
361 cd04731 HisF The cyclase subun 44.1 1.3E+02 0.0028 31.0 9.1 70 24-98 26-100 (243)
362 PRK13125 trpA tryptophan synth 44.0 2.1E+02 0.0046 29.7 10.8 86 9-99 121-215 (244)
363 CHL00206 ycf2 Ycf2; Provisiona 43.9 17 0.00036 48.4 2.9 35 183-221 1628-1662(2281)
364 PRK04128 1-(5-phosphoribosyl)- 43.7 90 0.0019 32.4 7.8 67 24-97 142-210 (228)
365 PF05729 NACHT: NACHT domain 43.5 2.4E+02 0.0051 26.1 10.1 75 39-114 80-164 (166)
366 PRK06096 molybdenum transport 43.5 2.1E+02 0.0046 31.0 10.8 70 20-95 192-261 (284)
367 PRK13586 1-(5-phosphoribosyl)- 43.5 1.3E+02 0.0027 31.5 8.9 66 26-97 147-217 (232)
368 PRK06893 DNA replication initi 43.5 12 0.00025 38.6 1.3 21 186-206 39-59 (229)
369 PLN02898 HMP-P kinase/thiamin- 43.3 1.5E+02 0.0032 34.3 10.3 86 22-114 395-496 (502)
370 TIGR03881 KaiC_arch_4 KaiC dom 43.3 12 0.00026 38.0 1.3 52 187-243 22-74 (229)
371 cd02810 DHOD_DHPD_FMN Dihydroo 43.1 2.5E+02 0.0054 29.6 11.3 40 55-96 230-270 (289)
372 cd00464 SK Shikimate kinase (S 43.0 13 0.00028 34.8 1.4 30 188-221 2-31 (154)
373 PF07475 Hpr_kinase_C: HPr Ser 43.0 13 0.00028 37.2 1.5 30 187-221 20-49 (171)
374 PRK00625 shikimate kinase; Pro 42.9 12 0.00026 37.2 1.2 30 188-221 3-32 (173)
375 cd00429 RPE Ribulose-5-phospha 42.9 1.7E+02 0.0038 28.8 9.6 81 14-98 102-194 (211)
376 PRK08356 hypothetical protein; 42.8 13 0.00029 37.0 1.5 20 187-206 6-25 (195)
377 TIGR01359 UMP_CMP_kin_fam UMP- 42.8 12 0.00027 36.3 1.3 19 188-207 2-20 (183)
378 PHA00729 NTP-binding motif con 42.8 13 0.00028 38.9 1.4 21 187-208 19-39 (226)
379 PF12775 AAA_7: P-loop contain 42.8 10 0.00022 40.4 0.8 24 183-207 31-54 (272)
380 PRK11359 cyclic-di-GMP phospho 42.6 1.9E+02 0.0041 34.6 11.4 99 10-111 684-793 (799)
381 PRK09590 celB cellobiose phosp 42.5 1.6E+02 0.0035 27.0 8.4 85 6-111 18-102 (104)
382 PHA02530 pseT polynucleotide k 42.5 12 0.00026 39.6 1.2 30 188-221 4-33 (300)
383 PRK03731 aroL shikimate kinase 42.4 13 0.00029 35.8 1.4 31 187-221 4-34 (171)
384 COG0352 ThiE Thiamine monophos 42.1 1.4E+02 0.0029 31.0 8.7 68 23-97 110-185 (211)
385 cd02020 CMPK Cytidine monophos 42.0 14 0.00029 34.2 1.4 29 189-221 3-31 (147)
386 TIGR01182 eda Entner-Doudoroff 42.0 2.6E+02 0.0056 28.8 10.7 89 12-106 4-94 (204)
387 COG0563 Adk Adenylate kinase a 41.9 14 0.00029 37.0 1.4 28 188-221 3-30 (178)
388 PF10662 PduV-EutP: Ethanolami 41.7 11 0.00023 36.8 0.6 50 193-243 8-57 (143)
389 PRK13585 1-(5-phosphoribosyl)- 41.7 1.5E+02 0.0033 30.4 9.2 77 26-107 150-237 (241)
390 PF13086 AAA_11: AAA domain; P 41.6 20 0.00044 35.2 2.6 47 188-235 20-75 (236)
391 PRK11545 gntK gluconate kinase 41.6 15 0.00033 35.8 1.7 17 193-209 2-18 (163)
392 TIGR00642 mmCoA_mut_beta methy 41.6 1.9E+02 0.0041 34.8 10.9 99 5-111 511-614 (619)
393 TIGR01668 YqeG_hyp_ppase HAD s 41.5 1.3E+02 0.0029 29.3 8.3 69 31-106 17-98 (170)
394 PRK08084 DNA replication initi 41.3 18 0.00039 37.4 2.3 25 182-207 42-66 (235)
395 PLN03210 Resistant to P. syrin 41.2 63 0.0014 41.3 7.5 24 188-212 210-234 (1153)
396 cd01143 YvrC Periplasmic bindi 41.1 52 0.0011 31.9 5.4 68 39-115 59-127 (195)
397 COG4619 ABC-type uncharacteriz 41.0 15 0.00032 37.3 1.5 20 187-207 31-50 (223)
398 TIGR00150 HI0065_YjeE ATPase, 41.0 17 0.00037 34.9 1.9 24 183-207 20-43 (133)
399 PRK12377 putative replication 40.6 16 0.00034 38.6 1.7 35 186-221 102-136 (248)
400 PRK04182 cytidylate kinase; Pr 40.6 15 0.00032 35.3 1.5 28 188-219 3-30 (180)
401 cd02022 DPCK Dephospho-coenzym 40.6 20 0.00044 35.2 2.4 37 188-235 2-38 (179)
402 PF07364 DUF1485: Protein of u 40.6 98 0.0021 33.6 7.8 83 30-114 87-178 (292)
403 cd02028 UMPK_like Uridine mono 40.5 14 0.00031 36.6 1.3 24 188-212 2-25 (179)
404 PRK03839 putative kinase; Prov 40.5 15 0.00032 35.9 1.4 30 188-221 3-32 (180)
405 TIGR03015 pepcterm_ATPase puta 40.4 14 0.00031 38.0 1.4 23 188-211 46-68 (269)
406 PRK10078 ribose 1,5-bisphospho 40.4 15 0.00032 36.4 1.4 21 188-209 5-25 (186)
407 PRK14114 1-(5-phosphoribosyl)- 40.2 1.2E+02 0.0026 31.8 8.2 67 26-97 145-222 (241)
408 PF13479 AAA_24: AAA domain 40.2 16 0.00035 37.1 1.7 21 185-206 3-23 (213)
409 PRK06806 fructose-bisphosphate 40.1 1.4E+02 0.003 32.2 8.8 70 23-97 151-229 (281)
410 cd03823 GT1_ExpE7_like This fa 40.1 1.7E+02 0.0036 30.1 9.3 74 28-114 254-328 (359)
411 PF06925 MGDG_synth: Monogalac 40.1 1E+02 0.0022 29.9 7.3 69 30-109 81-152 (169)
412 cd00820 PEPCK_HprK Phosphoenol 40.0 15 0.00032 34.0 1.2 21 186-207 16-36 (107)
413 cd01858 NGP_1 NGP-1. Autoanti 40.0 2.6E+02 0.0056 26.5 9.9 20 187-207 104-123 (157)
414 cd03313 enolase Enolase: Enola 39.8 1.7E+02 0.0037 33.1 9.8 80 26-109 262-346 (408)
415 COG1875 NYN ribonuclease and A 39.7 41 0.00088 37.9 4.7 44 55-100 107-150 (436)
416 cd03316 MR_like Mandelate race 39.6 77 0.0017 34.5 7.0 73 24-101 199-273 (357)
417 TIGR02673 FtsE cell division A 39.3 16 0.00034 36.6 1.5 27 181-208 24-50 (214)
418 cd02803 OYE_like_FMN_family Ol 38.9 2.6E+02 0.0056 30.0 10.8 66 27-97 227-309 (327)
419 COG0194 Gmk Guanylate kinase [ 38.8 15 0.00033 37.4 1.2 23 188-210 6-28 (191)
420 PF00005 ABC_tran: ABC transpo 38.8 13 0.00028 34.2 0.7 27 185-212 11-37 (137)
421 PRK11308 dppF dipeptide transp 38.8 16 0.00035 39.8 1.5 30 179-209 35-64 (327)
422 CHL00095 clpC Clp protease ATP 38.7 19 0.00041 44.3 2.3 47 188-238 541-587 (821)
423 PRK01033 imidazole glycerol ph 38.6 1.6E+02 0.0035 31.0 8.9 70 24-98 29-103 (258)
424 PRK14962 DNA polymerase III su 38.5 13 0.00028 42.8 0.8 45 160-206 12-56 (472)
425 PF05673 DUF815: Protein of un 38.5 25 0.00054 37.3 2.8 47 183-231 50-96 (249)
426 PRK06851 hypothetical protein; 38.5 15 0.00032 41.1 1.1 46 188-238 217-262 (367)
427 COG1411 Uncharacterized protei 38.4 1.2E+02 0.0026 31.5 7.4 69 26-98 138-210 (229)
428 COG1493 HprK Serine kinase of 38.4 85 0.0018 34.3 6.7 49 68-116 80-129 (308)
429 PRK13946 shikimate kinase; Pro 38.3 18 0.0004 35.7 1.7 32 186-221 11-42 (184)
430 PF01695 IstB_IS21: IstB-like 38.3 15 0.00032 36.6 1.1 38 183-221 45-82 (178)
431 cd03269 ABC_putative_ATPase Th 38.3 17 0.00037 36.3 1.5 27 181-208 22-48 (210)
432 TIGR02315 ABC_phnC phosphonate 38.1 17 0.00038 37.1 1.6 27 181-208 24-50 (243)
433 PTZ00301 uridine kinase; Provi 38.1 17 0.00037 37.3 1.5 20 188-208 6-25 (210)
434 cd03221 ABCF_EF-3 ABCF_EF-3 E 38.1 17 0.00038 34.5 1.5 29 181-210 22-50 (144)
435 COG5012 Predicted cobalamin bi 38.1 1E+02 0.0022 32.4 7.0 88 7-99 122-214 (227)
436 PRK07414 cob(I)yrinic acid a,c 38.0 1.2E+02 0.0026 30.7 7.4 46 39-87 114-165 (178)
437 PRK15453 phosphoribulokinase; 38.0 17 0.00037 39.4 1.5 22 187-208 6-27 (290)
438 COG3684 LacD Tagatose-1,6-bisp 38.0 1.5E+02 0.0033 31.9 8.3 68 28-98 189-263 (306)
439 cd03230 ABC_DR_subfamily_A Thi 37.9 17 0.00037 35.4 1.4 27 180-207 21-47 (173)
440 PRK06543 nicotinate-nucleotide 37.8 3.8E+02 0.0083 29.1 11.6 80 6-94 180-261 (281)
441 cd03266 ABC_NatA_sodium_export 37.6 18 0.00038 36.3 1.5 28 180-208 26-53 (218)
442 cd03255 ABC_MJ0796_Lo1CDE_FtsE 37.6 18 0.00038 36.3 1.5 27 182-209 27-53 (218)
443 PF13245 AAA_19: Part of AAA d 37.4 18 0.0004 31.0 1.3 26 185-210 9-35 (76)
444 COG0134 TrpC Indole-3-glycerol 37.3 3.4E+02 0.0075 29.0 11.0 83 12-98 151-236 (254)
445 PRK07667 uridine kinase; Provi 37.3 17 0.00037 36.3 1.4 32 188-220 20-51 (193)
446 cd04723 HisA_HisF Phosphoribos 37.2 2.5E+02 0.0054 29.1 9.9 86 24-116 34-123 (233)
447 TIGR03410 urea_trans_UrtE urea 37.2 19 0.0004 36.6 1.6 28 181-209 22-49 (230)
448 PF03102 NeuB: NeuB family; I 37.2 91 0.002 32.9 6.7 91 9-108 61-162 (241)
449 PRK08727 hypothetical protein; 37.2 18 0.00038 37.4 1.5 20 186-206 42-61 (233)
450 smart00052 EAL Putative diguan 37.0 1.5E+02 0.0032 29.6 8.1 90 10-102 139-239 (241)
451 PRK08116 hypothetical protein; 36.9 18 0.00038 38.4 1.4 35 186-221 115-149 (268)
452 cd00071 GMPK Guanosine monopho 36.9 18 0.0004 34.2 1.4 21 188-209 2-22 (137)
453 PRK06843 inosine 5-monophospha 36.8 1.5E+02 0.0032 33.8 8.7 75 21-98 199-285 (404)
454 PRK11124 artP arginine transpo 36.8 19 0.00041 36.9 1.6 28 181-209 24-51 (242)
455 cd03818 GT1_ExpC_like This fam 36.7 2.5E+02 0.0055 30.6 10.5 65 41-115 301-366 (396)
456 COG0464 SpoVK ATPases of the A 36.7 21 0.00045 40.9 2.0 31 187-221 278-308 (494)
457 cd01573 modD_like ModD; Quinol 36.7 1.8E+02 0.0039 31.2 9.0 70 20-97 186-257 (272)
458 PRK06305 DNA polymerase III su 36.6 15 0.00033 41.9 1.0 45 160-206 15-59 (451)
459 cd03283 ABC_MutS-like MutS-lik 36.6 18 0.00039 36.5 1.4 18 188-206 28-45 (199)
460 cd01131 PilT Pilus retraction 36.6 19 0.0004 36.2 1.5 23 188-211 4-27 (198)
461 KOG0652 26S proteasome regulat 36.5 22 0.00047 38.3 2.0 24 183-207 203-226 (424)
462 COG1123 ATPase components of v 36.5 18 0.0004 42.3 1.6 29 182-211 314-342 (539)
463 cd00956 Transaldolase_FSA Tran 36.4 2.3E+02 0.005 29.1 9.4 85 12-99 96-186 (211)
464 PRK06552 keto-hydroxyglutarate 36.4 3.6E+02 0.0077 27.9 10.8 93 11-107 8-103 (213)
465 PRK01130 N-acetylmannosamine-6 36.2 1.3E+02 0.0028 30.6 7.5 40 54-97 44-93 (221)
466 PTZ00314 inosine-5'-monophosph 36.2 1.4E+02 0.0029 34.9 8.5 55 39-96 252-308 (495)
467 TIGR01859 fruc_bis_ald_ fructo 36.2 1.4E+02 0.0031 32.1 8.2 70 23-98 151-230 (282)
468 PRK06526 transposase; Provisio 36.2 18 0.00038 38.2 1.3 38 183-221 96-133 (254)
469 cd01141 TroA_d Periplasmic bin 36.2 88 0.0019 30.4 6.1 74 32-115 63-139 (186)
470 TIGR01761 thiaz-red thiazoliny 36.0 2.6E+02 0.0056 31.1 10.3 91 9-114 18-113 (343)
471 PRK07998 gatY putative fructos 36.0 6E+02 0.013 27.6 13.9 114 2-118 3-126 (283)
472 PF03328 HpcH_HpaI: HpcH/HpaI 35.9 3.1E+02 0.0068 27.8 10.3 85 24-111 7-105 (221)
473 COG1856 Uncharacterized homolo 35.8 1.2E+02 0.0026 32.1 7.0 84 12-101 144-254 (275)
474 TIGR03263 guanyl_kin guanylate 35.7 20 0.00043 34.7 1.5 21 188-209 4-24 (180)
475 cd04962 GT1_like_5 This family 35.7 2.3E+02 0.0051 29.8 9.8 55 51-114 281-335 (371)
476 PRK06106 nicotinate-nucleotide 35.6 5.5E+02 0.012 27.8 12.4 79 8-95 183-263 (281)
477 PRK14957 DNA polymerase III su 35.6 15 0.00032 43.2 0.7 45 160-206 14-58 (546)
478 PRK15093 antimicrobial peptide 35.5 20 0.00043 39.1 1.6 29 180-209 28-56 (330)
479 COG4178 ABC-type uncharacteriz 35.5 35 0.00077 40.5 3.7 28 180-208 414-441 (604)
480 PRK04195 replication factor C 35.5 20 0.00043 41.1 1.7 32 186-221 40-71 (482)
481 TIGR00362 DnaA chromosomal rep 35.5 20 0.00043 40.0 1.6 43 187-234 138-182 (405)
482 PRK08185 hypothetical protein; 35.1 1.5E+02 0.0033 32.0 8.1 63 24-92 148-222 (283)
483 KOG0726 26S proteasome regulat 35.0 23 0.0005 38.7 1.9 35 183-221 217-251 (440)
484 PRK10584 putative ABC transpor 35.0 21 0.00045 36.2 1.5 27 182-209 33-59 (228)
485 PRK14024 phosphoribosyl isomer 35.0 1.8E+02 0.0039 30.2 8.5 77 27-108 148-238 (241)
486 PF12846 AAA_10: AAA-like doma 34.9 20 0.00042 37.0 1.4 37 188-225 4-40 (304)
487 PRK11331 5-methylcytosine-spec 34.8 50 0.0011 38.1 4.6 25 182-207 191-215 (459)
488 PRK00411 cdc6 cell division co 34.8 18 0.00039 39.7 1.1 41 184-229 54-96 (394)
489 PRK09473 oppD oligopeptide tra 34.8 19 0.00041 39.3 1.3 28 180-208 37-64 (330)
490 PRK09302 circadian clock prote 34.7 18 0.00038 41.8 1.1 53 186-243 32-86 (509)
491 TIGR02782 TrbB_P P-type conjug 34.7 20 0.00043 38.7 1.4 25 183-208 130-154 (299)
492 TIGR00735 hisF imidazoleglycer 34.6 1.8E+02 0.0039 30.4 8.5 70 24-98 29-103 (254)
493 cd03260 ABC_PstB_phosphate_tra 34.6 21 0.00045 36.2 1.5 27 182-209 23-49 (227)
494 cd01129 PulE-GspE PulE/GspE Th 34.5 26 0.00057 37.1 2.2 35 186-221 81-115 (264)
495 PF02254 TrkA_N: TrkA-N domain 34.5 2.2E+02 0.0048 25.3 8.0 39 54-96 76-114 (116)
496 PRK15079 oligopeptide ABC tran 34.4 20 0.00044 39.1 1.5 29 180-209 42-70 (331)
497 cd00267 ABC_ATPase ABC (ATP-bi 34.4 21 0.00046 33.9 1.4 26 182-208 22-47 (157)
498 PRK06015 keto-hydroxyglutarate 34.4 3E+02 0.0066 28.3 9.8 86 17-107 5-91 (201)
499 cd03258 ABC_MetN_methionine_tr 34.3 21 0.00046 36.3 1.5 26 181-207 27-52 (233)
500 KOG0921 Dosage compensation co 34.3 95 0.0021 38.7 6.9 12 377-388 989-1000(1282)
No 1
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-40 Score=364.41 Aligned_cols=202 Identities=21% Similarity=0.250 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.++.++..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||++||++++++|++. .+.+||||||+|++++
T Consensus 15 ~ir~~l~~~L~~~G~~-v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~~~Gl~ll~~i~~~--~~~~pVI~~Tg~g~i~ 89 (464)
T COG2204 15 DIRELLEQALELAGYE-VVTAESAEEALEALSE--SPFDLVLLDIRMPGMDGLELLKEIKSR--DPDLPVIVMTGHGDID 89 (464)
T ss_pred HHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhh--CCCCCEEEEeCCCCHH
Confidence 4688999999999999 7899999999999998 6899999999 9999999999999988 4999999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGG 162 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~ 162 (687)
.+++|++.||+|||.|||++++|...|.++++......+.... .........
T Consensus 90 ~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~----------------------------~~~~~~~~~ 141 (464)
T COG2204 90 TAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRS----------------------------LKRAKSLGG 141 (464)
T ss_pred HHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhh----------------------------hhccccccC
Confidence 9999999999999999999999999999999876554321100 000111234
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+++|+++.||.........|.|+++||| +||||||||++||+||.+|.|+++|||+|| |+|||++|+|||||||.
T Consensus 142 ~liG~S~am~~l~~~i~kvA~s~a~VLI-~GESGtGKElvAr~IH~~S~R~~~PFVavN----caAip~~l~ESELFGhe 216 (464)
T COG2204 142 ELVGESPAMQQLRRLIAKVAPSDASVLI-TGESGTGKELVARAIHQASPRAKGPFIAVN----CAAIPENLLESELFGHE 216 (464)
T ss_pred CceecCHHHHHHHHHHHHHhCCCCCEEE-ECCCCCcHHHHHHHHHhhCcccCCCceeee----cccCCHHHHHHHhhccc
Confidence 6889999999999999999999999999 899999999999999999999999999999 99999999999999997
Q ss_pred c
Q 005631 243 L 243 (687)
Q Consensus 243 l 243 (687)
=
T Consensus 217 k 217 (464)
T COG2204 217 K 217 (464)
T ss_pred c
Confidence 5
No 2
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.92 E-value=9e-25 Score=243.22 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|++.+.+
T Consensus 14 ~~~~~L~~~L~~~g~~-v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dgl~~l~~ir~~--~~~~pvIvlt~~~~~~ 88 (469)
T PRK10923 14 SIRWVLERALAGAGLT-CTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLPVIIMTAHSDLD 88 (469)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCHHHHHHHHHhh--CCCCeEEEEECCCCHH
Confidence 3456677888889998 6799999999999987 8899999999 9999999999999976 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGG 162 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~ 162 (687)
.+..+++.||++||.||++.++|...|.+++......... . .. .. .....
T Consensus 89 ~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--------~----~~--~~----------------~~~~~ 138 (469)
T PRK10923 89 AAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP--------R----NI--QV----------------NGPTT 138 (469)
T ss_pred HHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHHHHHHhh--------h----hh--hh----------------ccccc
Confidence 9999999999999999999999999999887654321100 0 00 00 00112
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+++|.+..++.........+.+..+|+| +||+||||+++|++||..|.|..+|||.|| |+++++.+++++||||.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli-~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~----c~~~~~~~~~~~lfg~~ 213 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLI-NGESGTGKELVAHALHRHSPRAKAPFIALN----MAAIPKDLIESELFGHE 213 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEE-EeCCCCcHHHHHHHHHhcCCCCCCCeEeee----CCCCCHHHHHHHhcCCC
Confidence 4667777776666666666789999999 899999999999999999999999999999 99999999999999997
Q ss_pred c
Q 005631 243 L 243 (687)
Q Consensus 243 l 243 (687)
-
T Consensus 214 ~ 214 (469)
T PRK10923 214 K 214 (469)
T ss_pred C
Confidence 4
No 3
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.92 E-value=1.9e-24 Score=238.91 Aligned_cols=198 Identities=17% Similarity=0.166 Sum_probs=157.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-----CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 7 MLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-----mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+...+ .||. |..+.++.+|++.+.. ..|||||+|+ ||+ ++|+++++.|++. .+.+|||++|++.+
T Consensus 12 ~~l~~~l--~~~~-v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~--~~~~piI~lt~~~~ 84 (445)
T TIGR02915 12 KQLKWSF--ADYE-LAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAI--APDTKVIVITGNDD 84 (445)
T ss_pred HHHHHHh--CCCe-EEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh--CCCCCEEEEecCCC
Confidence 3444455 7898 6789999999999988 8899999999 996 8999999999876 58999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccc
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVN 160 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~ 160 (687)
.+.++++++.||+|||.||++.++|..+|++++......... ...+. . ... ..
T Consensus 85 ~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~l~~~~-----~~l~~----~-~~~-----------------~~ 137 (445)
T TIGR02915 85 RENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLYTLETEN-----RRLQS----A-LGG-----------------TA 137 (445)
T ss_pred HHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhhhhHHHH-----HHhhh----h-hhc-----------------cc
Confidence 999999999999999999999999999998887543221100 00000 0 000 00
Q ss_pred cCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccC
Q 005631 161 GGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS 240 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFG 240 (687)
..+++|.+..++.........+.+..+|+| .||+||||+++|++||..|.|..+|||.|| |+++++.+++++|||
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~~~~~vli-~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~----c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAPSDITVLL-LGESGTGKEVLARALHQLSDRKDKRFVAIN----CAAIPENLLESELFG 212 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEE-ECCCCcCHHHHHHHHHHhCCcCCCCeEEEE----CCCCChHHHHHHhcC
Confidence 123455555555544444444578899999 799999999999999999999999999999 999999999999999
Q ss_pred Ccc
Q 005631 241 RDL 243 (687)
Q Consensus 241 h~l 243 (687)
|.-
T Consensus 213 ~~~ 215 (445)
T TIGR02915 213 YEK 215 (445)
T ss_pred CCC
Confidence 863
No 4
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.91 E-value=6.5e-24 Score=235.03 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|...||. |..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|++.+.+.
T Consensus 16 ~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~g~~ll~~i~~~--~~~~pvI~lt~~~~~~~ 90 (457)
T PRK11361 16 VRRMLSTAFALQGFE-THCANNGRTALHLFAD--IHPDVVLMDIRMPEMDGIKALKEMRSH--ETRTPVILMTAYAEVET 90 (457)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEeCCCCHHH
Confidence 455677788888998 6789999999999987 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccCC
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGGD 163 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~D 163 (687)
+.++++.||+|||.||++.++|...|.+++......... ..... .... ......
T Consensus 91 ~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~l~~~~-----~~l~~-----~l~~----------------~~~~~~ 144 (457)
T PRK11361 91 AVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEI-----RHLHQ-----ALST----------------SWQWGH 144 (457)
T ss_pred HHHHHHCCccEEEecccCHHHHHHHHhhhccccccchhh-----hhhhh-----hhhc----------------cccccc
Confidence 999999999999999999999999998776543221110 00000 0000 001123
Q ss_pred CCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 164 GSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 164 ~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
+.+.++.++..+......+.+..+|+| .||+||||+++|++||..|.|..+||+.|| |.++++.+++++||||..
T Consensus 145 ii~~S~~~~~~~~~~~~~a~~~~~vli-~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~----c~~~~~~~~~~~lfg~~~ 219 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIALSQASVLI-SGESGTGKELIARAIHYNSRRAKGPFIKVN----CAALPESLLESELFGHEK 219 (457)
T ss_pred eecccHHHhHHHHHHHHHcCCCcEEEE-EcCCCccHHHHHHHHHHhCCCCCCCeEEEE----CCCCCHHHHHHHhcCCCC
Confidence 566667777766666666789999999 899999999999999999999999999999 999999999999999964
No 5
>PRK15115 response regulator GlrR; Provisional
Probab=99.91 E-value=1e-23 Score=233.02 Aligned_cols=194 Identities=16% Similarity=0.240 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|++.+...
T Consensus 17 ~~~~l~~~L~~~g~~-v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~--~~~~pvIvlt~~~~~~~ 91 (444)
T PRK15115 17 LLKLLGMRLTSEGYS-VVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKV--QPGMPVIILTAHGSIPD 91 (444)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHH
Confidence 456677788888997 7799999999999987 8899999999 9999999999999976 58899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccCC
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGGD 163 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~D 163 (687)
+.++++.||+|||.||++.++|...|..+++....... . . . ...
T Consensus 92 ~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~~~~~~---~---~---------------------------~---~~~ 135 (444)
T PRK15115 92 AVAATQQGVFSFLTKPVDRDALYKAIDDALEQSAPATD---E---R---------------------------W---REA 135 (444)
T ss_pred HHHHHhcChhhhccCCCCHHHHHHHHHHHHHhhhcccc---c---c---------------------------h---hhc
Confidence 99999999999999999999999999988764321100 0 0 0 012
Q ss_pred CCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 164 GSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 164 ~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
+++.++.++..+......+.++.+|+| .||+||||+++|++||..|.|...|||.|| |+++++.++|++||||..
T Consensus 136 lig~s~~~~~~~~~~~~~a~~~~~vli-~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~----c~~~~~~~~~~~lfg~~~ 210 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLI-NGQSGTGKEILAQAIHNASPRASKPFIAIN----CGALPEQLLESELFGHAR 210 (444)
T ss_pred ccccCHHHHHHHHHHHhhccCCCeEEE-EcCCcchHHHHHHHHHHhcCCCCCCeEEEe----CCCCCHHHHHHHhcCCCc
Confidence 445555555555555555688889999 899999999999999999999999999999 999999999999999975
Q ss_pred c
Q 005631 244 D 244 (687)
Q Consensus 244 ~ 244 (687)
.
T Consensus 211 ~ 211 (444)
T PRK15115 211 G 211 (444)
T ss_pred C
Confidence 3
No 6
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.90 E-value=2.3e-23 Score=231.20 Aligned_cols=199 Identities=15% Similarity=0.207 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|++.+...
T Consensus 10 ~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g~~ll~~l~~~--~~~~~vIvlt~~~~~~~ 84 (463)
T TIGR01818 10 IRWVLEKALSRAGYE-VRTFGNAASVLRALAR--GQPDLLITDVRMPGEDGLDLLPQIKKR--HPQLPVIVMTAHSDLDT 84 (463)
T ss_pred HHHHHHHHHHHcCCE-EEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHHh--CCCCeEEEEeCCCCHHH
Confidence 456677788889998 6789999999999987 7899999999 9999999999999976 57899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccCC
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGGD 163 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~D 163 (687)
+.++++.|++|||.||++.++|...|.+++......... . .. .. .. . ....
T Consensus 85 ~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--------~---~~----~~-~~---------~----~~~~ 135 (463)
T TIGR01818 85 AVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--------P---AD----AG-EA---------E----DSAE 135 (463)
T ss_pred HHHHHHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--------h---hh----hh-cc---------c----cccc
Confidence 999999999999999999999999999887653221100 0 00 00 00 0 0123
Q ss_pred CCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 164 GSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 164 ~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
++|.++.++..+......+.+..+|+| +||+||||+++|++||..+.|..+|||.|| |+++++.+++++||||.
T Consensus 136 lig~s~~~~~v~~~i~~~a~~~~~vli-~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~----c~~~~~~~~~~~lfg~~ 209 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLI-NGESGTGKELVARALHRHSPRANGPFIALN----MAAIPKDLIESELFGHE 209 (463)
T ss_pred eeecCHHHHHHHHHHHHHhCcCCeEEE-ECCCCCCHHHHHHHHHHhCCCCCCCeEEEe----CCCCCHHHHHHHhcCCC
Confidence 556666666555555555688889999 899999999999999999999999999999 99999999999999985
No 7
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.89 E-value=1.1e-22 Score=224.06 Aligned_cols=198 Identities=20% Similarity=0.256 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+++..+.. ..|||||+|+ ||+++|++++..|+.. .+.+|||++|++.+.+.
T Consensus 17 ~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~--~~~~~vi~lt~~~~~~~ 91 (441)
T PRK10365 17 HCTILQALLRGWGYN-VALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKAL--NPAIPVLIMTAYSSVET 91 (441)
T ss_pred HHHHHHHHHHHCCCe-EEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeEEEEECCCCHHH
Confidence 456677888888998 6789999999999987 7899999999 9999999999999986 58899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccCC
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGGD 163 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~D 163 (687)
+.++++.||++||.||++.++|...|.+++++...... ... .. . . ....
T Consensus 92 ~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~~~~~~-------~~~---------~~---~-----~-------~~~~ 140 (441)
T PRK10365 92 AVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDA-------ETP---------AV---T-----A-------SQFG 140 (441)
T ss_pred HHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-------hhh---------hh---h-----c-------cccc
Confidence 99999999999999999999999999988765322110 000 00 0 0 0012
Q ss_pred CCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 164 GSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 164 ~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
+.+.+..++.........+.+..+|++ .|++||||+++|++||..|.|..+|||.+| |+++++.+++++||||.-
T Consensus 141 lig~s~~~~~~~~~i~~~~~~~~~vli-~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~----c~~~~~~~~~~~lfg~~~ 215 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLI-HGDSGTGKELVARAIHASSARSEKPLVTLN----CAALNESLLESELFGHEK 215 (441)
T ss_pred eEecCHHHHHHHHHHhhccCCCCeEEE-EecCCCCHHHHHHHHHHcCCCCCCCeeeee----CCCCCHHHHHHHhcCCCC
Confidence 345555555555555555678888999 799999999999999999999999999999 999999999999999853
No 8
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.75 E-value=1.2e-17 Score=171.17 Aligned_cols=110 Identities=27% Similarity=0.370 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..++...|+..||. |..+.++.+|++.+.. . |||||+|+ ||+++|+++|++||+. ....+||||+|+.++..
T Consensus 11 ~i~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi~Lta~~~~~ 85 (229)
T COG0745 11 ELAELLKEYLEEEGYE-VDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPIIVLTARDDEE 85 (229)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEEEEECCCcHH
Confidence 4678899999999999 7899999999999998 7 99999999 9999999999999965 45789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
..+.++++||+|||+|||++.||.+.|+.++++...
T Consensus 86 d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 86 DRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred HHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999999999999999999999999887643
No 9
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=4.4e-19 Score=194.84 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=74.5
Q ss_pred cccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhc
Q 005631 159 VNGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAK 238 (687)
Q Consensus 159 ~~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESel 238 (687)
....+++|.+++|...+..+.++|.|+.+||| .||||||||+|||+||..|+|+++|||.+| |+|||++|+||||
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi-~GETGtGKElvAraIH~~S~R~~kPfV~~N----CAAlPesLlESEL 294 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLI-RGETGTGKELVARAIHQLSPRRDKPFVKLN----CAALPESLLESEL 294 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcCCCeEEE-ecCCCccHHHHHHHHHhhCcccCCCceeee----ccccchHHHHHHH
Confidence 34457899999998888888888999999999 899999999999999999999999999999 9999999999999
Q ss_pred cCCcc
Q 005631 239 RSRDL 243 (687)
Q Consensus 239 FGh~l 243 (687)
|||.=
T Consensus 295 FGHeK 299 (550)
T COG3604 295 FGHEK 299 (550)
T ss_pred hcccc
Confidence 99974
No 10
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-18 Score=192.98 Aligned_cols=78 Identities=8% Similarity=-0.056 Sum_probs=71.4
Q ss_pred cCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccC
Q 005631 161 GGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS 240 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFG 240 (687)
..+++|.++.|+......-..|.|+++||| .||||||||||||+||..|+|+++|||+|| |+|||++|+||||||
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A~tdstVLi-~GESGTGKElfA~~IH~~S~R~~~PFIaiN----CaAiPe~LlESELFG 318 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIAKTDSTVLI-LGESGTGKELFARAIHNLSPRANGPFIAIN----CAAIPETLLESELFG 318 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhcCCCCcEEE-ecCCCccHHHHHHHHHhcCcccCCCeEEEe----cccCCHHHHHHHHhC
Confidence 357888888887777777777899999999 899999999999999999999999999999 999999999999999
Q ss_pred Ccc
Q 005631 241 RDL 243 (687)
Q Consensus 241 h~l 243 (687)
+.=
T Consensus 319 ye~ 321 (560)
T COG3829 319 YEK 321 (560)
T ss_pred cCC
Confidence 864
No 11
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.72 E-value=1.9e-18 Score=132.83 Aligned_cols=45 Identities=47% Similarity=0.976 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcccCCCCccchhhhhhhhhhCCCcccceecccc
Q 005631 632 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 676 (687)
Q Consensus 632 r~~~~~r~~~kr~~r~~~k~iry~~rk~~a~~r~r~~g~f~~~~~ 676 (687)
|+++|+||++||+.|+|+|+|||+|||.+||.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 789999999999999999999999999999999999999999854
No 12
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.70 E-value=9.2e-17 Score=157.97 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |.++.++.+.|..... ..|-+||+|+ ||+++|++|..+|.+. ...+||||||+|+|+.
T Consensus 15 ~vr~al~~Ll~s~G~~-v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~--~~~~PVIfiTGhgDIp 89 (202)
T COG4566 15 SVRDALAFLLESAGFQ-VKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAER--GIRLPVIFLTGHGDIP 89 (202)
T ss_pred HHHHHHHHHHHhCCce-eeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhc--CCCCCEEEEeCCCChH
Confidence 3678899999999999 7899999999999655 7899999999 9999999999999988 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+++||+.||.|||.|||+...|+.+|++++++...
T Consensus 90 maV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~ 125 (202)
T COG4566 90 MAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDAS 125 (202)
T ss_pred HHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987544
No 13
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.68 E-value=2.3e-16 Score=174.99 Aligned_cols=103 Identities=25% Similarity=0.511 Sum_probs=96.9
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCC
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG 91 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aG 91 (687)
++..|+++|.+|.+|.+||+++.+ ..|||||+|+ ||+|||++|++.|++. .|.+.+||+|++.+.+.|.+||+.|
T Consensus 23 w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLdLI~~ike~--~p~~~~IILSGy~eFeYak~Am~lG 98 (475)
T COG4753 23 WEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLDLIKAIKEQ--SPDTEFIILSGYDEFEYAKKAMKLG 98 (475)
T ss_pred hhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHh--CCCceEEEEeccchhHHHHHHHhcC
Confidence 466799999999999999999999 9999999999 9999999999999987 6999999999999999999999999
Q ss_pred CCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 92 AVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 92 A~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
+.|||+||++.++|..+|.++.......
T Consensus 99 V~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 99 VKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred chhheeCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765543
No 14
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=4.3e-16 Score=155.86 Aligned_cols=108 Identities=25% Similarity=0.371 Sum_probs=98.7
Q ss_pred HHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 10 LLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 10 ~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
..+-...||.+|.+|.++++|+.+++. ..|||||+|+ ||+.+|++||..|++. ...+-|||+|+..+.+.+.+|+
T Consensus 18 ~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd~~Gi~lL~~ir~~--~~~~DVI~iTAA~d~~tI~~al 93 (224)
T COG4565 18 RYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPDGNGIELLPELRSQ--HYPVDVIVITAASDMETIKEAL 93 (224)
T ss_pred HHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCCCccHHHHHHHHhc--CCCCCEEEEeccchHHHHHHHH
Confidence 334456799999999999999999998 8899999999 9999999999999988 4788999999999999999999
Q ss_pred hCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCC
Q 005631 89 SKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSG 121 (687)
Q Consensus 89 ~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~ 121 (687)
+.||.|||.|||..+.|..+|.+..++++....
T Consensus 94 r~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~ 126 (224)
T COG4565 94 RYGVVDYLIKPFTFERLQQALTRYRQKRHALES 126 (224)
T ss_pred hcCchhheecceeHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998887766543
No 15
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.62 E-value=9.9e-15 Score=129.35 Aligned_cols=103 Identities=28% Similarity=0.428 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||..|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|+... +.+|||++|...+..
T Consensus 9 ~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~ 84 (112)
T PF00072_consen 9 EIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSD 84 (112)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHH
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecccccccccccccccc--ccccEEEecCCCCHH
Confidence 456778888889999558999999999999998 8899999999 99999999999999884 899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
...++++.|+++||.||++.++|..+|+
T Consensus 85 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 85 EVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999998874
No 16
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.54 E-value=2.1e-14 Score=163.39 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=70.2
Q ss_pred cCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhc--------CcccCCCceecCChhhhhhhhhh
Q 005631 161 GGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSN--------AEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~--------S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
..+++|.+..|+.........+.++.|||| +||+|||||++||+||.. |.|.++|||+|| |+++|+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI-~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in----Caal~e~ 292 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLI-QGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN----CGAIAES 292 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEE-ECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee----cccCChh
Confidence 346888888888777777777899999999 899999999999999999 999999999999 9999999
Q ss_pred hhhhhccCCc
Q 005631 233 CENFAKRSRD 242 (687)
Q Consensus 233 L~ESelFGh~ 242 (687)
++|++||||.
T Consensus 293 lleseLFG~~ 302 (538)
T PRK15424 293 LLEAELFGYE 302 (538)
T ss_pred hHHHHhcCCc
Confidence 9999999984
No 17
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.52 E-value=2e-13 Score=138.41 Aligned_cols=110 Identities=24% Similarity=0.339 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 2 MILLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 2 ~l~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
++++..+...+-...++++|..+.++.++++.++. ..||+||+|+ ||+++|++++++|++. +|.++|||+|.+.+
T Consensus 10 ~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~~--~p~~~vvvlt~~~~ 85 (211)
T COG2197 10 PLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRAR--GPDIKVVVLTAHDD 85 (211)
T ss_pred HHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHHH--CCCCcEEEEeccCC
Confidence 44555555555455569999999999999999888 8999999999 9999999999999966 69999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...+.++++.||.+||.|..++++|..+|+.++..
T Consensus 86 ~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 86 PAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999988643
No 18
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=8.2e-14 Score=148.74 Aligned_cols=109 Identities=28% Similarity=0.405 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHh-hcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS-HKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~-~~~~p~iPVIvmTa~~d~~ 82 (687)
....+..+|+..+|. |..|.+|++|++++.. .+||+||+|+ ||+|+|+++|.+|+. .+....+|||++|++.+.+
T Consensus 26 ~~~~~~~lL~~~~y~-v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d~~ 102 (360)
T COG3437 26 NLEALRQLLRMIGYR-VIEAENGEEALKLLQE--EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYADSE 102 (360)
T ss_pred HHHHHHHHHHhcccc-eeeecCchHHHHHhcc--cCCceEEeeccCCCccHHHHHHHHHhcCCcccccceEEEeecCChH
Confidence 567888999999999 7899999999999988 7899999999 999999999999999 7777889999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...+|+..||+|||.|||++.+|+..+...++.+
T Consensus 103 ~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 103 DRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred HHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987555433
No 19
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.48 E-value=8.3e-13 Score=133.47 Aligned_cols=110 Identities=24% Similarity=0.271 Sum_probs=97.3
Q ss_pred HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
++..+..+|+. .++.+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.++||++|++.+..
T Consensus 16 ~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~gle~~~~l~~~--~~~~~iivls~~~~~~ 91 (225)
T PRK10046 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGRGINLLHELVQA--HYPGDVVFTTAASDME 91 (225)
T ss_pred HHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCEEEEEcCCCHH
Confidence 44556666664 588778999999999999988 8899999999 9999999999999975 3678999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.||++||.||++.++|...|++++.....
T Consensus 92 ~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 92 TVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred HHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988766544
No 20
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.47 E-value=1.4e-14 Score=142.02 Aligned_cols=75 Identities=11% Similarity=0.024 Sum_probs=63.3
Q ss_pred CCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 164 GSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 164 ~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
++|.++.|+....+....+.++.|||| +||+||||+++||+||..|.|+.+|||.|| |++++++++|++|||+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI-~GE~GtGK~~lA~~IH~~s~r~~~pfi~vn----c~~~~~~~~e~~LFG~~~ 75 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLI-TGETGTGKELLARAIHNNSPRKNGPFISVN----CAALPEELLESELFGHEK 75 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEE-ECSTTSSHHHHHHHHHHCSTTTTS-EEEEE----TTTS-HHHHHHHHHEBCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEE-EcCCCCcHHHHHHHHHHhhhcccCCeEEEe----hhhhhcchhhhhhhcccc
Confidence 357777777777777777899999999 899999999999999999999999999999 999999999999999853
No 21
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.46 E-value=5.7e-13 Score=147.25 Aligned_cols=112 Identities=28% Similarity=0.445 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
+.+..+..+|...||. |..+.++.+|+..+.+ ..||+||+|+ ||++||+++++++|.......+|||++++.++..
T Consensus 143 ~~~~~l~~~L~~~g~~-v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~~~~d~~ 219 (435)
T COG3706 143 TQRERLRRILQVEGFR-VVEATDGEEALLQLAE--LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLSSKDDDE 219 (435)
T ss_pred HHHHHHHHHHHhccce-eeeecCHHHHHHHHhc--CCCcEEEEecCCCccCHHHHHHHHhcccccccccEEEEecccchH
Confidence 4667788899999998 7899999999999998 7999999999 9999999999999998877899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
...+|++.|+.|||+||+.+.+|...+++.+++.+.
T Consensus 220 ~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 220 LVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred HHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999988877653
No 22
>PRK10693 response regulator of RpoS; Provisional
Probab=99.46 E-value=4.3e-13 Score=142.62 Aligned_cols=142 Identities=20% Similarity=0.328 Sum_probs=106.2
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC-
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI- 100 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~- 100 (687)
.+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+.+.++++.||+|||.||+
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~--~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNR--GDQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 47899999999987 8899999999 9999999999999976 4789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCC---------------CCCCCcchhhhhhhccccccc------------cCCCCCC---CC
Q 005631 101 RKNELKNLWQHVWRRCHSSS---------------GSGSESCTQTQKSIKSKNVEN------------SGNNTGS---ND 150 (687)
Q Consensus 101 ~~eeL~~~L~~alr~~~~~s---------------~s~~~~~~~~q~~l~~k~i~~------------se~~s~s---~~ 150 (687)
+.++|..+|.++++...... ..+.......+..+.+..... +....|+ ..
T Consensus 78 ~~~~L~~~i~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~a~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~GD~~d~~ 157 (303)
T PRK10693 78 DLNRLREMVFACLYPSMFNSRVEEEERLFRDWDALVDNPAAAAKLLKQLQPPVQQVIAHCRVNYRQLVAADKPGLVLDIA 157 (303)
T ss_pred cHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHhhCHHHHHHHHHhhCChhhhhhhhcccceEeccCCCCCccEEeee
Confidence 58999998887764321111 111122233344444432111 1222333 34
Q ss_pred CCCCCccccccCCCCCCC
Q 005631 151 EDNNGSIGVNGGDGSDDG 168 (687)
Q Consensus 151 ~~d~~~~g~~~~D~sG~G 168 (687)
..+++.+++.+.|++|||
T Consensus 158 ~l~~~~~~~~~~DvsGhg 175 (303)
T PRK10693 158 ALSDNDLAFYCLDVTRAG 175 (303)
T ss_pred ecCCCcEEEEEEecCCCC
Confidence 556778999999999965
No 23
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.45 E-value=4.5e-13 Score=152.48 Aligned_cols=134 Identities=7% Similarity=-0.026 Sum_probs=96.7
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCcccccc
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNG 161 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~ 161 (687)
-....|-+.|....|.-. .+.|..++..+++......... ......... +. . ......
T Consensus 154 ~~~~~A~~~gl~~ili~s--~esi~~a~~~A~~~~~~~~~~~---~~~~~~~~~-~~-----~-----------~~~~~f 211 (526)
T TIGR02329 154 LITDLAEQAGLHGVFLYS--ADSVRQAFDDALDVARATRLRQ---AATLRSATR-NQ-----L-----------RTRYRL 211 (526)
T ss_pred HHHHHHHHcCCceEEEec--HHHHHHHHHHHHHHHHHHHHHH---HhHHHHHhh-hh-----h-----------ccccch
Confidence 445556677777777754 4888888888876544321000 000000000 00 0 001223
Q ss_pred CCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 162 GDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 162 ~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.+++|.++.|+....+....+.++.|||| +||+|||||++||+||..|.|+++|||+|| |+++|+.++|++||||
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI-~GE~GTGKe~lA~~IH~~S~r~~~pfv~in----C~~l~e~lleseLFG~ 286 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLI-LGESGTGKELVAQAIHQLSGRRDFPFVAIN----CGAIAESLLEAELFGY 286 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEE-ECCCCcCHHHHHHHHHHhcCcCCCCEEEec----cccCChhHHHHHhcCC
Confidence 46888888888777777777899999999 899999999999999999999999999999 9999999999999998
Q ss_pred c
Q 005631 242 D 242 (687)
Q Consensus 242 ~ 242 (687)
.
T Consensus 287 ~ 287 (526)
T TIGR02329 287 E 287 (526)
T ss_pred c
Confidence 4
No 24
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-12 Score=117.09 Aligned_cols=106 Identities=28% Similarity=0.443 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHhhCC-CccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGL-QAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~-eALe~L~~~~~-~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+.++..+|...|+. |..+.++. +|++.++. . .||+||+|+ ||+++|++++++|+.. .+.+|||++|++..
T Consensus 16 ~~~~~~~~~l~~~g~~-v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~~pvv~~t~~~~ 90 (130)
T COG0784 16 VNRRLLKRLLEDLGYE-VVEAADGEEEALELLRE--LPQPDLILLDINMPGMDGIELLRRLRAR--GPNIPVILLTAYAD 90 (130)
T ss_pred HHHHHHHHHHHHcCCe-EEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCCCCEEEEEcCcC
Confidence 5678889999999988 78999995 99999998 7 499999999 9999999999999987 46788999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHH-HHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWR 114 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~ee-L~~~L~~alr 114 (687)
......+++.|+.+||.||+...+ |...+.+++.
T Consensus 91 ~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 91 EADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred HHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 888888899999999999977666 7777775544
No 25
>PLN03029 type-a response regulator protein; Provisional
Probab=99.41 E-value=3.3e-12 Score=130.10 Aligned_cols=112 Identities=28% Similarity=0.493 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhh------------------CCCccEEEEcc-CCCCCHHHHHHHHHhh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDL------------------TNHIDLVLTEV-MPCLSGVALLSKIMSH 64 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~------------------~~~pDLVLlDl-MP~mdGleLL~~Ir~~ 64 (687)
..+.++..+|+..||. |..+.++.+|++.+... ...+||||+|+ ||+++|+++++.|++.
T Consensus 19 ~~~~~l~~~L~~~g~~-v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G~e~l~~ir~~ 97 (222)
T PLN03029 19 IDRKLIEKLLKTSSYQ-VTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTGYDLLKKIKES 97 (222)
T ss_pred HHHHHHHHHHHHcCce-EEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 4566778888889998 77999999999998641 01367999999 9999999999999986
Q ss_pred cCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 65 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 65 ~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.....+|||+||+......+.++++.||.+||.||+...+|..++.++++..
T Consensus 98 ~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 98 SSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred cccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 5446899999999999999999999999999999999999988877765543
No 26
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.41 E-value=3.7e-12 Score=126.13 Aligned_cols=106 Identities=24% Similarity=0.355 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
....+...|+..||. |..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|+..+...
T Consensus 12 ~~~~l~~~L~~~g~~-v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~l~~~lr~~--~~~~pii~ls~~~~~~~ 86 (223)
T PRK10816 12 LRHHLKVQLQDAGHQ-VDAAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPILVLTARESWQD 86 (223)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEEEEEcCCCHHH
Confidence 345667778889998 6799999999999987 8899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...+++.||+|||.||++..+|...|..++++
T Consensus 87 ~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 87 KVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred HHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988765
No 27
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.41 E-value=4.3e-12 Score=125.55 Aligned_cols=106 Identities=23% Similarity=0.322 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..||. +..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|++. +.+|||++|++.+...
T Consensus 13 ~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi~lt~~~~~~~ 86 (225)
T PRK10529 13 IRRFLRTALEGDGMR-VFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVIVLSARSEESD 86 (225)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEEEEECCCCHHH
Confidence 455677778888998 6789999999998877 7899999999 9999999999999965 5799999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..++++.||+|||.||++.++|...++.++++.
T Consensus 87 ~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 87 KIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999887653
No 28
>PRK11173 two-component response regulator; Provisional
Probab=99.41 E-value=4e-12 Score=127.69 Aligned_cols=106 Identities=25% Similarity=0.382 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. +.+|||++|++.+...
T Consensus 15 ~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pii~lt~~~~~~~ 88 (237)
T PRK11173 15 TRNTLKSIFEAEGYD-VFEATDGAEMHQILSE--NDINLVIMDINLPGKNGLLLARELREQ---ANVALMFLTGRDNEVD 88 (237)
T ss_pred HHHHHHHHHHHcCCE-EEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCCCEEEEECCCCHHH
Confidence 455677788888998 7899999999999987 7899999999 9999999999999975 5799999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...+++.||+|||.||++..+|...|+.++++.
T Consensus 89 ~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 89 KILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999888764
No 29
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.40 E-value=1.3e-12 Score=124.53 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+...+...++..||. |.++.+.+|||..++. ..|...++|+ |.+.+|+++++.|++. .++..|||+|+|+++..
T Consensus 21 f~~~LaRa~e~RGf~-v~~a~~~~eal~~art--~~PayAvvDlkL~~gsGL~~i~~lr~~--~~d~rivvLTGy~sIAT 95 (182)
T COG4567 21 FLRTLARAMERRGFA-VVTAESVEEALAAART--APPAYAVVDLKLGDGSGLAVIEALRER--RADMRIVVLTGYASIAT 95 (182)
T ss_pred HHHHHHHHHhccCce-eEeeccHHHHHHHHhc--CCCceEEEEeeecCCCchHHHHHHHhc--CCcceEEEEecchHHHH
Confidence 455677888999999 7899999999999998 8999999999 9999999999999988 58999999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
+++|++.||.|||.||-+.+.+..++.+.
T Consensus 96 AV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 96 AVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred HHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 99999999999999999999998887643
No 30
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.40 E-value=5.7e-12 Score=125.08 Aligned_cols=106 Identities=25% Similarity=0.420 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..||. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. .+.+|||++|++.+.+.
T Consensus 12 ~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~--~~~~pii~ls~~~~~~~ 86 (227)
T PRK09836 12 TGEYLTKGLTEAGFV-VDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSA--NKGMPILLLTALGTIEH 86 (227)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEEEEEcCCCHHH
Confidence 455667777888996 7899999999999877 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..++++.||+|||.||++.++|...|+.++++
T Consensus 87 ~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 87 RVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999887764
No 31
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.39 E-value=6.4e-12 Score=124.00 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
....+...|+..||. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||++++..+...
T Consensus 14 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~~ii~l~~~~~~~~ 87 (221)
T PRK10766 14 TRARLQGYFEQEGYT-VSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSR---STVGIILVTGRTDSID 87 (221)
T ss_pred HHHHHHHHHHHcCCE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCEEEEECCCcHHH
Confidence 445566778888998 7899999999999987 7899999999 9999999999999975 5799999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
..++++.||+|||.||++..+|...|..++++..
T Consensus 88 ~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 88 RIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred HHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999998887643
No 32
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.39 E-value=7.7e-12 Score=122.53 Aligned_cols=107 Identities=28% Similarity=0.403 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..|+. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|++.+...
T Consensus 12 ~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~--~~~~pii~ls~~~~~~~ 86 (222)
T PRK10643 12 LLQGLILALQTEGYA-CDCASTAREAEALLES--GHYSLVVLDLGLPDEDGLHLLRRWRQK--KYTLPVLILTARDTLED 86 (222)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHH
Confidence 445667777888998 7889999999999987 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||.|||.||++.++|...|+.++++.
T Consensus 87 ~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 87 RVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred HHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999887654
No 33
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.38 E-value=7.8e-12 Score=124.29 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. +..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||++|++.+...
T Consensus 14 ~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~ 90 (229)
T PRK10161 14 IREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEED 90 (229)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHH
Confidence 445666777888998 5689999999999987 7899999999 99999999999999764347899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..++++.||++||.||++.++|...|..++++
T Consensus 91 ~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 91 RVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988765
No 34
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.37 E-value=9.9e-12 Score=121.86 Aligned_cols=108 Identities=26% Similarity=0.421 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. |..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||++|++.+...
T Consensus 14 ~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~ 90 (226)
T TIGR02154 14 IRELIAYNLEKAGYD-VVEAGDGDEALTLINE--RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEED 90 (226)
T ss_pred HHHHHHHHHHHCCCE-EEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHH
Confidence 345566777788998 5689999999999987 7899999999 99999999999998764346899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..++++.||++||.||++.++|...|..++++
T Consensus 91 ~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 91 RVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred HHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999888765
No 35
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.37 E-value=9.3e-12 Score=124.76 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..||. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++++..+...
T Consensus 17 ~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~--~~~~pii~ls~~~~~~~ 91 (239)
T PRK09468 17 LRALLERYLTEQGFQ-VRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQ--NNPTPIIMLTAKGEEVD 91 (239)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEECCCcHHH
Confidence 456677788889998 6789999999999987 8899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...++..||+|||.||++.++|...|..++++
T Consensus 92 ~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 92 RIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred HHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999988765
No 36
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.36 E-value=1.6e-11 Score=125.18 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=95.0
Q ss_pred HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
++..+..+|.. .++.++..+.++.++++.+......|||||+|+ ||+++|+++++.|++. .+.+|||++|++.+..
T Consensus 13 ~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~--~~~~~vI~ls~~~~~~ 90 (239)
T PRK10430 13 VAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA--GCKSDVIVISSAADAA 90 (239)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--CCCCCEEEEECCCcHH
Confidence 34555666654 578777789999999998862125799999999 9999999999999976 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.++++.||.+||.||++.++|..+|.+++....
T Consensus 91 ~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~ 125 (239)
T PRK10430 91 TIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 (239)
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988766543
No 37
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.36 E-value=1.4e-11 Score=120.81 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
....+..+|+..|+. +..+.++.+++..+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|||++|++.+...
T Consensus 12 ~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~--~~~~~ii~lt~~~~~~~ 86 (219)
T PRK10336 12 IGDGIKTGLSKMGFS-VDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREK--GQREPVLILTARDALAE 86 (219)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHH
Confidence 445566777788998 6789999999999887 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+++..||.+||.||++.++|...|+.++++.
T Consensus 87 ~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 87 RVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred HHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998877653
No 38
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.35 E-value=1.7e-11 Score=121.43 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC--CCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~--mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.+..+...|+..||. |..+.++.+++..+.. ..||+||+|+ ||+ .+|+++++.|+.. .+.+|||++|++.+.
T Consensus 12 ~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~--~~~~pii~ls~~~~~ 86 (227)
T TIGR03787 12 IRENYADALKRQGYQ-VTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSL--SATLPIIFLTARDSD 86 (227)
T ss_pred HHHHHHHHHHHCCcE-EEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCCCCEEEEECCCCH
Confidence 455667777888998 6688999999999987 7899999999 998 5899999999976 478999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+..++++||++||.||++.++|...|+.++++.
T Consensus 87 ~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 87 FDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred HHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888764
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.35 E-value=2.3e-12 Score=134.10 Aligned_cols=107 Identities=20% Similarity=0.364 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..++..+|.+.|+. |..+....+||+.|.. ..|||||+|+ ||+|+|++++++++.. .+.+|||+||+|+.
T Consensus 11 a~~~~l~~iLs~~~~~-~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngiefaeQvr~i--~~~v~iifIssh~e-- 83 (361)
T COG3947 11 AIVKLLSVILSRAGHE-VRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIEFAEQVRDI--ESAVPIIFISSHAE-- 83 (361)
T ss_pred HHHHHHHHHHHhccch-hhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHHHHHHHHHh--hccCcEEEEecchh--
Confidence 3456788889999965 8999999999999998 9999999999 9999999999999998 48999999999975
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+..++..-+.|||+||+.++.|..+|.+++++..
T Consensus 84 ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve 118 (361)
T COG3947 84 YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVE 118 (361)
T ss_pred hhhhhcccchHhhccCCCCHHHHHHHHHHHhcccc
Confidence 77778888889999999999999999988875543
No 40
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.34 E-value=1.8e-11 Score=123.00 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..||. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||++++..+...
T Consensus 13 ~~~~l~~~L~~~g~~-v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii~l~~~~~~~~ 86 (240)
T PRK10701 13 VGSLIAAYLAKHDID-VTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIVLLTSLDSDMN 86 (240)
T ss_pred HHHHHHHHHHHcCCE-EEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEEEEECCCCHHH
Confidence 456677788889998 6788999999999987 8899999999 9999999999999974 4679999999999889
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..++++.||+|||.||++..+|...+..++++.
T Consensus 87 ~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 87 HILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999887664
No 41
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.34 E-value=9.7e-12 Score=125.88 Aligned_cols=106 Identities=8% Similarity=0.016 Sum_probs=88.9
Q ss_pred HHHHHHHHHh-CCCeE-EEEeCCHHHHHHHHHhhCCCccEEE---Ecc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 6 AMLLLLCFEI-AVMKV-ITEATNGLQAWKILEDLTNHIDLVL---TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 6 r~ll~~lLe~-~G~~~-V~~A~sg~eALe~L~~~~~~pDLVL---lDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
+.-+..+|.. .++.+ |..+.+++++++.+.. ..||+|| +|+ ||+++|++++++|++. +|.+||||+|++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~--~p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHH--CCCCCEEEEeCCC
Confidence 3445566643 34443 6789999999999887 7899998 677 8999999999999987 6899999999998
Q ss_pred ChHHHHHHH-hCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCL-SKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 80 d~~~av~Am-~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+...+..++ +.||.+||.||++.++|..+|+.+++.
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 877777766 799999999999999999999988754
No 42
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.34 E-value=2e-11 Score=119.27 Aligned_cols=107 Identities=27% Similarity=0.393 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. +..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||+++...+...
T Consensus 10 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~iivls~~~~~~~ 84 (218)
T TIGR01387 10 TAEYLQQGLSESGYV-VDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRS--GKQTPVLFLTARDSVAD 84 (218)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcc--CCCCcEEEEEcCCCHHH
Confidence 345566677788997 7899999999999987 8899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+++..||++||.||++.++|...++.++++.
T Consensus 85 ~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 85 KVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999998877653
No 43
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.34 E-value=2e-11 Score=123.33 Aligned_cols=106 Identities=20% Similarity=0.348 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecC-CChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL-DSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~-~d~~ 82 (687)
.+..+...|+..||. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||++|+. .+..
T Consensus 13 ~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii~lt~~~~~~~ 86 (241)
T PRK13856 13 MRHLIVEYLTIHAFK-VTAVADSQQFNRVLAS--ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIIIISGDRLEEA 86 (241)
T ss_pred HHHHHHHHHHHcCCE-EEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEEEECCCCcHH
Confidence 456677778888998 7789999999999987 7899999999 9999999999999865 57999999985 4667
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...++++.||+|||.||++.++|...|+.++++.
T Consensus 87 ~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 87 DKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred HHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999887653
No 44
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.33 E-value=3e-11 Score=129.87 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=116.4
Q ss_pred HHHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC-
Q 005631 4 LLAMLLLLCF-EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS- 80 (687)
Q Consensus 4 ~~r~ll~~lL-e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d- 80 (687)
..+.++..+| +..++.++..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|+.. ..+|||++++..+
T Consensus 11 ~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~e~l~~l~~~---~~~pvivvs~~~~~ 85 (337)
T PRK12555 11 LAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGVEATRRIMAE---RPCPILIVTSLTER 85 (337)
T ss_pred HHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHHHHHHHHHHH---CCCcEEEEeCCCCc
Confidence 3455666666 57789866789999999999987 8899999999 9999999999999875 3589999998754
Q ss_pred -hHHHHHHHhCCCCEEEeCCC---------CHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCC
Q 005631 81 -MGLVFKCLSKGAVDFLVKPI---------RKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSND 150 (687)
Q Consensus 81 -~~~av~Am~aGA~DYL~KP~---------~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~ 150 (687)
...+.++++.||+|||.||+ ..++|...|+.+.+..... . . .. ...
T Consensus 86 ~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~~~~~-~---~--------------~~--~~~---- 141 (337)
T PRK12555 86 NASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRLLGRR-L---A--------------PA--AAP---- 141 (337)
T ss_pred CHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhccccc-C---C--------------Cc--ccC----
Confidence 56788999999999999999 3444444444433211000 0 0 00 000
Q ss_pred CCCCCccccccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 151 EDNNGSIGVNGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 151 ~~d~~~~g~~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
. . .... .......|++ .|.++.|.+.+++.+...+.+...|||.+-
T Consensus 142 ----~-~---------------~~~~----~~~~~~~v~~-ig~s~gg~~al~~ll~~l~~~~~~~ivivq 187 (337)
T PRK12555 142 ----A-A---------------ASAA----PFRTTPRLVA-IGASAGGPAALAVLLGGLPADFPAAIVIVQ 187 (337)
T ss_pred ----C-C---------------CCCC----CCCCCceEEE-EEeCcCCHHHHHHHHHhCCCCCCCcEEEEE
Confidence 0 0 0000 0012234556 488888999999999999999998888875
No 45
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.32 E-value=4.2e-13 Score=142.94 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=55.9
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCccc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLD 244 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~ 244 (687)
|-.++|.|| .||||||||++|++-|..|+|..+||+++| |+++|++..|||||||.-.
T Consensus 224 AmlDAPLLI-~GeTGTGKdLlAkaCH~~S~R~~~pFlalN----CA~lPe~~aEsElFG~apg 281 (511)
T COG3283 224 AMLDAPLLI-TGETGTGKDLLAKACHLASPRHSKPFLALN----CASLPEDAAESELFGHAPG 281 (511)
T ss_pred hccCCCeEE-ecCCCchHHHHHHHHhhcCcccCCCeeEee----cCCCchhHhHHHHhcCCCC
Confidence 589999999 899999999999999999999999999999 9999999999999999864
No 46
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.32 E-value=2.5e-11 Score=119.41 Aligned_cols=106 Identities=25% Similarity=0.383 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|...||. |..+.++.+++..+.. ..||+||+|+ ||+.+|+++++.|+.. .+.+|||++|++.+...
T Consensus 15 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~ 89 (228)
T PRK11083 15 IADTLVYALQSEGFT-VEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAF--HPALPVIFLTARSDEVD 89 (228)
T ss_pred HHHHHHHHHHHCCCE-EEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCEEEEEcCCcHHH
Confidence 345566677788998 6689999999999887 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...+++.||++||.||++..+|...|..++++
T Consensus 90 ~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 90 RLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred HHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 99999999999999999999999999887654
No 47
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.32 E-value=3e-11 Score=124.27 Aligned_cols=108 Identities=23% Similarity=0.370 Sum_probs=93.2
Q ss_pred HHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 6 AMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 6 r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..+..+|.. .++.++..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.......+|||++|++.....
T Consensus 15 ~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~ 92 (262)
T TIGR02875 15 CNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKI 92 (262)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHH
Confidence 4455556654 467767789999999999988 8899999999 99999999999999874333489999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..++++.|+.+||.||++.++|...|++++..
T Consensus 93 ~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 93 TQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999887653
No 48
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.32 E-value=3.2e-11 Score=118.71 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. |..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||++++..+...
T Consensus 12 ~~~~l~~~L~~~~~~-v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~ 85 (223)
T PRK11517 12 TQEWVTQGLSEAGYV-IDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLTARDSVDD 85 (223)
T ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEEEEECCCCHHH
Confidence 345566777888997 7899999999999987 7899999999 9999999999999875 4799999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..++++.||+|||.||++.++|...|+.++++
T Consensus 86 ~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 86 RVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred HHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999887654
No 49
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.31 E-value=2.1e-11 Score=147.57 Aligned_cols=108 Identities=29% Similarity=0.376 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+.++..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+|+|+++++.|++. .+.+|||++|+....+
T Consensus 812 ~~~~~l~~~L~~~G~~-v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG~el~~~ir~~--~~~~pII~lTa~~~~~ 886 (924)
T PRK10841 812 INRRLLADQLGSLGYQ-CKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDGYRLTQRLRQL--GLTLPVIGVTANALAE 886 (924)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCCCCEEEEECCCCHH
Confidence 4577888899999998 7899999999999988 8899999999 9999999999999987 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...+|++.|+++||.||++.++|...|.+++++.
T Consensus 887 ~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 887 EKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998876654
No 50
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.31 E-value=3.9e-11 Score=119.46 Aligned_cols=106 Identities=29% Similarity=0.482 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. |..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||++|++.+...
T Consensus 18 ~~~~l~~~l~~~~~~-v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~ 91 (240)
T CHL00148 18 IRKILETRLSIIGYE-VITASDGEEALKLFRK--EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPIIMLTALGDVSD 91 (240)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEEEECCCCHHh
Confidence 345566677788998 6689999999999887 7899999999 9999999999999875 5899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...+++.||++||.||++.++|...|..++++.
T Consensus 92 ~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 92 RITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998887653
No 51
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.31 E-value=4e-11 Score=116.65 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+.++..+.++.++++.+.. ..|||||+|+ ||+++|+++++.++.. .+.+|||++++..+...
T Consensus 12 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~ 87 (204)
T PRK09958 12 AIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGIIIIVSAKNDHFY 87 (204)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeEEEEeCCCCHHH
Confidence 44566777778899854579999999999987 7899999999 9999999999999976 47889999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..+++..||++||.||++.++|...|+.+++.
T Consensus 88 ~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 88 GKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred HHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999887643
No 52
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.31 E-value=3.3e-11 Score=119.37 Aligned_cols=105 Identities=33% Similarity=0.451 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+...|+..|+. |..+.++.++++.+.. .||+||+|+ ||+++|+++++.|+.. .+ +|||++|+..+...
T Consensus 13 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~--~~-~~ii~lt~~~~~~~ 85 (232)
T PRK10955 13 LTSLLKELLEMEGFN-VIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQT--HQ-TPVIMLTARGSELD 85 (232)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhc--CC-CcEEEEECCCCHHH
Confidence 455667777888998 6689999999998753 699999999 9999999999999976 34 99999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..++++.||++||.||++.++|...|..++++.
T Consensus 86 ~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 86 RVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred HHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998887653
No 53
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.30 E-value=1.9e-11 Score=146.05 Aligned_cols=109 Identities=25% Similarity=0.308 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+.++..+|+..|+. |..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|++....+.+|||++|++.+..
T Consensus 678 ~~~~~l~~~L~~~~~~-v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~~~~ 754 (919)
T PRK11107 678 ANLKLIGALLEEQVEH-VVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHAMAG 754 (919)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCCCHH
Confidence 3466778888899998 7899999999999988 8999999999 9999999999999986556789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...+|++.|++|||.||++..+|...|.+++..
T Consensus 755 ~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 755 ERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred HHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 999999999999999999999999998877643
No 54
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.30 E-value=4.9e-11 Score=119.24 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC---CCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 5 LAMLLLLCFEIAVM-KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC---LSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 5 ~r~ll~~lLe~~G~-~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
.+..+..+|+..++ .+|..+.++.++++.+.. ..|||||+|+ ||+ ++|++++++|+.. .+.+|||++|.+.
T Consensus 15 ~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~--~~~~~iIvls~~~ 90 (216)
T PRK10840 15 VLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSLSIIVLTMNN 90 (216)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHH--CCCCcEEEEEecC
Confidence 34556666666554 557889999999999987 7899999999 999 5999999999876 5889999999999
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+...+.++++.||++||.||+++++|..+|+.++.
T Consensus 91 ~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 91 NPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 99999999999999999999999999999987754
No 55
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.30 E-value=7.8e-13 Score=144.93 Aligned_cols=78 Identities=10% Similarity=-0.014 Sum_probs=72.0
Q ss_pred cCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcc-cCCCceecCChhhhhhhhhhhhhhhcc
Q 005631 161 GGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEI-TGSRRVPVTAAKECQDHEERCENFAKR 239 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R-~~~pFV~vn~~~~C~aipe~L~ESelF 239 (687)
..+++|....++....+....+++..+||| .||||||||++|+.||..|.| .+.|||+|| |+++++++.|++||
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~ap~~~~vLi-~GetGtGKel~A~~iH~~s~r~~~~PFI~~N----Ca~~~en~~~~eLF 151 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAYAPSGLPVLI-IGETGTGKELFARLIHALSARRAEAPFIAFN----CAAYSENLQEAELF 151 (403)
T ss_pred hhhhhccCHHHHHHHHHHHhhCCCCCcEEE-ecCCCccHHHHHHHHHHhhhcccCCCEEEEE----HHHhCcCHHHHHHh
Confidence 356888888888888888888899999999 799999999999999999999 799999999 99999999999999
Q ss_pred CCcc
Q 005631 240 SRDL 243 (687)
Q Consensus 240 Gh~l 243 (687)
||-=
T Consensus 152 G~~k 155 (403)
T COG1221 152 GHEK 155 (403)
T ss_pred cccc
Confidence 9864
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.30 E-value=1.2e-11 Score=134.73 Aligned_cols=106 Identities=22% Similarity=0.318 Sum_probs=92.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
+..+..+|... +. +..+.++.+|+..+.. ..|||||+|+ ||+++|+++++.|++....+.+|||++|++.+.+.+
T Consensus 168 ~~~l~~~l~~~-~~-~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls~~~~~~~~ 243 (457)
T PRK09581 168 AERIANILKEE-FR-VVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVPILLLVDEDDDPRL 243 (457)
T ss_pred HHHHHHHHhhc-ce-eeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCcEEEEeCCCChHHH
Confidence 44556666554 55 4579999999999887 8999999999 999999999999998644689999999999999999
Q ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 85 v~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+|++.||.|||.||+++++|...|...+++
T Consensus 244 ~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 244 VKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred HHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876654
No 57
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.29 E-value=1.1e-12 Score=141.55 Aligned_cols=74 Identities=8% Similarity=-0.078 Sum_probs=68.1
Q ss_pred CCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 164 GSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 164 ~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
++|.++.|+..+......+.++.|||| +||+||||+++||+||..|.|.++|||.|| |+++++.++|++||||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI-~GE~GtGK~~lAr~iH~~s~r~~~pfv~vn----c~~~~~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLI-IGERGTGKELIAARLHYLSKRWQGPLVKLN----CAALSENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEE-ECCCCChHHHHHHHHHHhcCccCCCeEEEe----CCCCChHHHHHHHhccc
Confidence 357777787777777777899999999 899999999999999999999999999999 99999999999999986
No 58
>PRK09483 response regulator; Provisional
Probab=99.28 E-value=6.6e-11 Score=116.23 Aligned_cols=107 Identities=25% Similarity=0.315 Sum_probs=94.8
Q ss_pred HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+. .++.++..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|||++|.+.+..
T Consensus 13 ~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 88 (217)
T PRK09483 13 VRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGGLEATRKILRY--TPDVKIIMLTVHTENP 88 (217)
T ss_pred HHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHH--CCCCeEEEEeCCCCHH
Confidence 44556666765 488866789999999999988 8899999999 9999999999999876 5889999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...+++..|+++||.||++.++|...|+.+++.
T Consensus 89 ~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 89 LPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999887653
No 59
>PRK14084 two-component response regulator; Provisional
Probab=99.28 E-value=6.9e-11 Score=119.96 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+..+ +..|..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|++. .+.++||++|++..
T Consensus 12 ~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~G~~~~~~i~~~--~~~~~iI~~t~~~~-- 85 (246)
T PRK14084 12 ARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDESGIELAAKIQKM--KEPPAIIFATAHDQ-- 85 (246)
T ss_pred HHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCEEEEEecChH--
Confidence 3445566666544 5557889999999999987 7899999999 9999999999999986 46788999998754
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|..+|.++++..
T Consensus 86 ~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 86 FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999887654
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.27 E-value=4e-11 Score=143.41 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhc--CCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~--~~p~iPVIvmTa~~d 80 (687)
..+.++..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. ..+.+|||++|++.+
T Consensus 701 ~~~~~l~~~L~~~g~~-v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~ 777 (921)
T PRK15347 701 TNRDIIGMMLVELGQQ-VTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAA 777 (921)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCC
Confidence 3567788888999998 7899999999999988 8899999999 99999999999999742 236799999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.....++++.|+++||.||++.++|...|.++++.
T Consensus 778 ~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 778 PEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999887653
No 61
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.26 E-value=2e-11 Score=145.06 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
+.+.+...+|+..|.+ |.++.+|.||++.+.. .+.||+||+|+ ||.|||+++.++||+... ..+|||.||++....
T Consensus 677 vn~~Va~~~l~~~g~~-~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pIvAlTa~~~~~ 753 (786)
T KOG0519|consen 677 VNRKVATGMLKKLGAE-VTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPIVALTADADPS 753 (786)
T ss_pred chHHHHHHHHHHhCCe-eEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-CCCCEEEEecCCcHH
Confidence 4678889999999999 7788899999999982 37899999999 999999999999998753 689999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
...+|++.|.+.||.|||..+.|...|++.+
T Consensus 754 ~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 754 TEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred HHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 9999999999999999999999998888765
No 62
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.26 E-value=2.8e-10 Score=123.19 Aligned_cols=92 Identities=32% Similarity=0.536 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCC--C
Q 005631 5 LAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD--S 80 (687)
Q Consensus 5 ~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~--d 80 (687)
.+..+..+|... ++.++..+.++.++++.+.. ..|||||+|+ ||+++|++++++|++.. + +|||++|+.. .
T Consensus 15 ~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dgle~l~~i~~~~--~-~piIvls~~~~~~ 89 (354)
T PRK00742 15 MRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDGLDALEKIMRLR--P-TPVVMVSSLTERG 89 (354)
T ss_pred HHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCChHHHHHHHHHhC--C-CCEEEEecCCCCC
Confidence 455666777665 88866689999999999987 8899999999 99999999999999873 4 9999999764 4
Q ss_pred hHHHHHHHhCCCCEEEeCCCC
Q 005631 81 MGLVFKCLSKGAVDFLVKPIR 101 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~ 101 (687)
.....++++.||+|||.||+.
T Consensus 90 ~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 90 AEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHHHHHHhCCCcEEEeCCcc
Confidence 567889999999999999994
No 63
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.26 E-value=1.3e-10 Score=112.91 Aligned_cols=107 Identities=16% Similarity=0.280 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+.. ++.++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++|++.+..
T Consensus 15 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 90 (210)
T PRK09935 15 IRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQI--QSTVKVLFLSSKSECF 90 (210)
T ss_pred HHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEECCCcHH
Confidence 344556666655 67755578999999999987 7899999999 9999999999999976 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...+++..|+++||.||++.++|...|+.+++.
T Consensus 91 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 91 YAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999887654
No 64
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.23 E-value=1.4e-10 Score=116.67 Aligned_cols=104 Identities=19% Similarity=0.348 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+..+ +.++..+.++.++++.+.. ..|||||+|+ ||+++|+++++.++.. ..++||++|++. +
T Consensus 13 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~~ii~vt~~~--~ 85 (238)
T PRK11697 13 AREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISGLELVGMLDPE---HMPYIVFVTAFD--E 85 (238)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHhccc---CCCEEEEEeccH--H
Confidence 3455666677666 4446679999999999987 7899999999 9999999999998643 356789999875 4
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|...|.++++.
T Consensus 86 ~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 86 YAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999999988654
No 65
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.22 E-value=1e-10 Score=140.93 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCC-ceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN-LPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~-iPVIvmTa~~d~ 81 (687)
..+.++..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+....... +|||++|++...
T Consensus 713 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~ 789 (968)
T TIGR02956 713 VNQMVAQGFLTRLGHK-VTLAESGQSALECFHQ--HAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFN 789 (968)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCH
Confidence 4567788889999998 7899999999999987 8899999999 999999999999998642222 999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+...++++.|+++||.||++.++|...|.+++.
T Consensus 790 ~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 790 EDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999988765
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.22 E-value=9.1e-11 Score=140.69 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+.++..+|+..||. |..+.++.+|++.+.. ...|||||+|+ ||+++|+++++.|++. .+.+|||++|++....
T Consensus 692 ~~~~~l~~~L~~~g~~-v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~~~~~~lr~~--~~~~~ii~~t~~~~~~ 767 (914)
T PRK11466 692 LTQRITAEMLNTSGAQ-VVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGITLARQLAQQ--YPSLVLIGFSAHVIDE 767 (914)
T ss_pred HHHHHHHHHHHhcCCc-eEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCEEEEeCCCchh
Confidence 3466778888889998 6789999999998864 14689999999 9999999999999986 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...++++.|+++||.||++.++|...|.++++.
T Consensus 768 ~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 768 TLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred hHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999988754
No 67
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.22 E-value=4.6e-12 Score=136.36 Aligned_cols=77 Identities=5% Similarity=-0.081 Sum_probs=71.2
Q ss_pred CCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 162 GDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 162 ~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.+++|.++.++....+....+.++.|||| +||+||||+++|++||..|.|.++|||.|| |+++++.+++++||||
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI-~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~----c~~~~~~~~~~~lfg~ 80 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLI-IGERGTGKELIASRLHYLSSRWQGPFISLN----CAALNENLLDSELFGH 80 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEE-ECCCCCcHHHHHHHHHHhCCccCCCeEEEe----CCCCCHHHHHHHHccc
Confidence 45788888888888888888899999999 899999999999999999999999999999 9999999999999998
Q ss_pred cc
Q 005631 242 DL 243 (687)
Q Consensus 242 ~l 243 (687)
.-
T Consensus 81 ~~ 82 (326)
T PRK11608 81 EA 82 (326)
T ss_pred cc
Confidence 74
No 68
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.21 E-value=2.5e-10 Score=113.70 Aligned_cols=106 Identities=24% Similarity=0.373 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|...|+. |..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||+++...+...
T Consensus 22 ~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii~l~~~~~~~~ 95 (240)
T PRK10710 22 LGQLLIDYLQAASYA-TTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRRF---SDIPIVMVTAKIEEID 95 (240)
T ss_pred HHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEEEEEcCCCHHH
Confidence 455677777888998 6789999999999987 7899999999 9999999999999864 5799999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...+++.||+|||.||++.++|...|..++++.
T Consensus 96 ~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 96 RLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred HHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998887654
No 69
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.21 E-value=5.2e-10 Score=97.33 Aligned_cols=110 Identities=20% Similarity=0.380 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
....+...++..++..+..+.+..++++.+.. ..+|+||+|. +++++|+++++.++.....+.+|+|+++...+...
T Consensus 17 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 94 (129)
T PRK10610 17 MRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKEN 94 (129)
T ss_pred HHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCcEEEEECCCCHHH
Confidence 34456667778888657789999999999877 7899999999 99999999999999764346789999999988899
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..++++.|+.+||.||++.++|...+++++++.
T Consensus 95 ~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 95 IIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred HHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999888764
No 70
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.21 E-value=2.4e-10 Score=110.46 Aligned_cols=102 Identities=28% Similarity=0.369 Sum_probs=89.4
Q ss_pred HHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 6 AMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 6 r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..+..+|.. .++.++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.++ +.+|||+++...+.+.
T Consensus 14 ~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~-----~~~~vi~~s~~~~~~~ 86 (196)
T PRK10360 14 RSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLP-----KGMATIMLSVHDSPAL 86 (196)
T ss_pred HHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHc-----cCCCEEEEECCCCHHH
Confidence 4455666654 367767789999999999987 7899999999 99999999999885 3579999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
...+++.||++||.||++.++|..+|+.+++
T Consensus 87 ~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 87 VEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred HHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999988875
No 71
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.19 E-value=3e-10 Score=123.88 Aligned_cols=109 Identities=28% Similarity=0.370 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|...+|. |..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||++|+..+...
T Consensus 14 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~ 90 (457)
T PRK09581 14 NVKLLEAKLLAEYYT-VLTASSGAEAIAICER--EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPED 90 (457)
T ss_pred HHHHHHHHHHhCCCE-EEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHH
Confidence 345566677778888 6789999999999987 7899999999 99999999999999764346899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||++||.||++.++|..+|..+++..
T Consensus 91 ~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 91 RVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877644
No 72
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.19 E-value=4.2e-10 Score=110.18 Aligned_cols=106 Identities=25% Similarity=0.399 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
...+..+|+..|+. +..+.++.++++.+.. ..||+||+|+ ||+++|++++..|+.. .+.+|||+++...+....
T Consensus 13 ~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~--~~~~~ii~lt~~~~~~~~ 87 (221)
T PRK15479 13 AHWLEKALVQNGFA-VDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKR--GQTLPVLLLTARSAVADR 87 (221)
T ss_pred HHHHHHHHHHCCCE-EEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCEEEEECCCCHHHH
Confidence 44566677778887 6789999999999887 7899999999 9999999999999976 478999999999999999
Q ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 85 v~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+++..||++||.||++.++|...++.++++.
T Consensus 88 ~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 88 VKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred HHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998877654
No 73
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.18 E-value=7.1e-12 Score=142.05 Aligned_cols=73 Identities=14% Similarity=0.005 Sum_probs=65.7
Q ss_pred CCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCccc
Q 005631 166 DDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLD 244 (687)
Q Consensus 166 G~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~ 244 (687)
+-++.....+.+....+..+.||++ .||+|||||.+||+||.+|. ..+|||+|| |+|||++|+||||||+.-.
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll-~GEtGtGKe~laraiH~~s~-~~gpfvAvN----CaAip~~liesELFGy~~G 389 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLL-QGETGTGKEVLARAIHQNSE-AAGPFVAVN----CAAIPEALIESELFGYVAG 389 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEe-cCCcchhHHHHHHHHHhccc-ccCCeEEEE----eccchHHhhhHHHhccCcc
Confidence 3444555678888888999999999 89999999999999999999 999999999 9999999999999998754
No 74
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.17 E-value=2.3e-10 Score=141.34 Aligned_cols=107 Identities=27% Similarity=0.348 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+.++..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|||++|++.+..
T Consensus 969 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~i~~~--~~~~pii~lt~~~~~~ 1043 (1197)
T PRK09959 969 TNRLLLKRQLNLLGYD-VDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGFELTRKLREQ--NSSLPIWGLTANAQAN 1043 (1197)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEECCCCHH
Confidence 4566788888999998 7899999999999987 8899999999 9999999999999976 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...++++.|+++||.||++.++|...|++++..
T Consensus 1044 ~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1044 EREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999877543
No 75
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.16 E-value=1.1e-11 Score=140.82 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=71.7
Q ss_pred CCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 162 GDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 162 ~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.+++|.+..++....+....+.++.|||| +||+||||+++|++||..|.|.++|||.|| |+++|++++|++||||
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI-~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~----c~~~~~~~~e~~lfG~ 261 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLI-LGETGVGKELVARAIHAASPRADKPLVYLN----CAALPESLAESELFGH 261 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEE-ECCCCccHHHHHHHHHHhCCcCCCCeEEEE----cccCChHHHHHHhcCc
Confidence 46788888888888888888899999999 899999999999999999999999999999 9999999999999998
Q ss_pred cc
Q 005631 242 DL 243 (687)
Q Consensus 242 ~l 243 (687)
.-
T Consensus 262 ~~ 263 (509)
T PRK05022 262 VK 263 (509)
T ss_pred cc
Confidence 53
No 76
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.16 E-value=3e-10 Score=134.38 Aligned_cols=108 Identities=19% Similarity=0.349 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCC-ceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN-LPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~-iPVIvmTa~~d~ 81 (687)
..+.++..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+. +|||++|++..
T Consensus 536 ~~~~~l~~~L~~~g~~-v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~- 611 (779)
T PRK11091 536 LNVIVARSVLEKLGNS-VDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVL- 611 (779)
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCch-
Confidence 3567788888999998 7899999999999987 8899999999 999999999999998743355 48999998765
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
....+++..|+++||.||++.++|...|.+++..
T Consensus 612 ~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 612 KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 4468899999999999999999999999887643
No 77
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.13 E-value=5.7e-10 Score=106.51 Aligned_cols=107 Identities=23% Similarity=0.382 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
....+..+|...+|. +..+.++.++++.+.. ..||+||+|+ ||+++|++++..|+.. .+.+|||++|...+...
T Consensus 15 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~--~~~~~ii~l~~~~~~~~ 89 (202)
T PRK09390 15 MRDSLAFLLDSAGFE-VRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKAR--GSPLPVIVMTGHGDVPL 89 (202)
T ss_pred HHHHHHHHHHHCCCe-EEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCEEEEECCCCHHH
Confidence 345566777778998 6789999999999887 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
...+++.|+++||.||+...+|...+..+++..
T Consensus 90 ~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 90 AVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred HHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998877654
No 78
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.12 E-value=1.3e-09 Score=105.79 Aligned_cols=105 Identities=24% Similarity=0.331 Sum_probs=92.1
Q ss_pred HHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 6 AMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 6 r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..+..+|... ++.++..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||+++...+...
T Consensus 19 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~~~~~~~~l~~~--~~~~~vi~l~~~~~~~~ 94 (216)
T PRK10651 19 RTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREK--SLSGRIVVFSVSNHEED 94 (216)
T ss_pred HHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCcEEEEeCCCCHHH
Confidence 44455666553 67656679999999999987 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
...+++.|+++||.||++..+|...|..+++
T Consensus 95 ~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 95 VVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 9999999999999999999999999988765
No 79
>PRK13435 response regulator; Provisional
Probab=99.12 E-value=1.3e-09 Score=101.63 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
....+...|+..|+.++..+.++.++++.+.. ..|||||+|+ |+ +.+|+++++.++.. +.+|||+++...+
T Consensus 17 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~~~~~~~~~l~~~---~~~pii~ls~~~~-- 89 (145)
T PRK13435 17 IALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGPTGVEVARRLSAD---GGVEVVFMTGNPE-- 89 (145)
T ss_pred HHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCCcHHHHHHHHHhC---CCCCEEEEeCCHH--
Confidence 34456677777899866689999999999877 7899999999 98 58999999999764 5799999998654
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
...++..|+++||.||++.++|...|++++.....
T Consensus 90 -~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 90 -RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred -HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 35678899999999999999999999988765444
No 80
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.11 E-value=2.6e-11 Score=138.18 Aligned_cols=77 Identities=4% Similarity=-0.134 Sum_probs=68.2
Q ss_pred CCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 162 GDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 162 ~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.+++|.++.++.........+.++.||+| +||+||||+++|++||..|.|..+|||.|| |+++|+.++|++|||+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI-~GE~GtGK~~lA~aiH~~s~r~~~pfv~in----ca~~~~~~~e~elFG~ 278 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLI-TGDTGTGKDLLAYACHLRSPRGKKPFLALN----CASIPDDVVESELFGH 278 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEE-ECCCCccHHHHHHHHHHhCCCCCCCeEEec----cccCCHHHHHHHhcCC
Confidence 35777777776666666566789999999 799999999999999999999999999999 9999999999999998
Q ss_pred cc
Q 005631 242 DL 243 (687)
Q Consensus 242 ~l 243 (687)
.-
T Consensus 279 ~~ 280 (520)
T PRK10820 279 AP 280 (520)
T ss_pred CC
Confidence 64
No 81
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.11 E-value=1.8e-09 Score=104.55 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=91.1
Q ss_pred HHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 6 AMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 6 r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
...+...|+. .++.++..+.++.+++..+.. ..||+||+|+ ||+++|++++..++.. .+.+|+|+++.+.+...
T Consensus 19 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~--~~~~~ii~l~~~~~~~~ 94 (215)
T PRK10403 19 RRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRD--GVTAQIIILTVSDASSD 94 (215)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHh--CCCCeEEEEeCCCChHH
Confidence 3445555654 577755679999999999887 7899999999 9999999999999976 47889999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
...+++.|+++||.||++.++|...|+.++.
T Consensus 95 ~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 95 VFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred HHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999988764
No 82
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.11 E-value=2.6e-11 Score=141.16 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=69.1
Q ss_pred cCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccC
Q 005631 161 GGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS 240 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFG 240 (687)
..+++|.++.++....+....+.++.|||| +||+|||||++||+||..|.|+.+|||.|| |+++|+++++++|||
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli-~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vn----c~~~~~~~~~~elfg 398 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLL-CGEEGVGKALLAQAIHNESERAAGPYIAVN----CQLYPDEALAEEFLG 398 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEE-ECCCCcCHHHHHHHHHHhCCccCCCeEEEE----CCCCChHHHHHHhcC
Confidence 345777777777776666667799999999 899999999999999999999999999999 999999999999999
Q ss_pred Cc
Q 005631 241 RD 242 (687)
Q Consensus 241 h~ 242 (687)
+.
T Consensus 399 ~~ 400 (638)
T PRK11388 399 SD 400 (638)
T ss_pred CC
Confidence 87
No 83
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.10 E-value=2e-09 Score=103.23 Aligned_cols=105 Identities=14% Similarity=0.281 Sum_probs=91.4
Q ss_pred HHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 6 AMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 6 r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..+..+|... ++.++..+.++.++++.+.. ..||+||+|+ ||+++|++++..++.. .+.+|||++|...+...
T Consensus 16 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~~~ii~ls~~~~~~~ 91 (211)
T PRK15369 16 INGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQR--WPAMNILVLTARQEEHM 91 (211)
T ss_pred HHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHH--CCCCcEEEEeCCCCHHH
Confidence 44555666554 56656689999999999887 7899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
...++..|+.+||.||++..+|...+..+++
T Consensus 92 ~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 92 ASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred HHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 9999999999999999999999999887754
No 84
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.08 E-value=4.2e-11 Score=136.76 Aligned_cols=78 Identities=12% Similarity=-0.011 Sum_probs=70.6
Q ss_pred cCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccC
Q 005631 161 GGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS 240 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFG 240 (687)
..+++|.+..++..+......+.++.|||| +||+||||+++|++||..|.|..+|||.|| |+++++.++|++|||
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli-~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~----c~~~~~~~~~~~lfg 269 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLL-RGESGTGKELIAKAIHYLSPRAKRPFVKVN----CAALSETLLESELFG 269 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEE-ECCCCccHHHHHHHHHHhCCCCCCCeEEee----cCCCCHHHHHHHHcC
Confidence 346788888887777777777899999999 899999999999999999999999999999 999999999999999
Q ss_pred Ccc
Q 005631 241 RDL 243 (687)
Q Consensus 241 h~l 243 (687)
|.-
T Consensus 270 ~~~ 272 (534)
T TIGR01817 270 HEK 272 (534)
T ss_pred CCC
Confidence 873
No 85
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.07 E-value=7e-10 Score=119.78 Aligned_cols=94 Identities=33% Similarity=0.501 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 3 ILLAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 3 l~~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
-++|.++..+|...+ +++|.++.|+.+|++.+.+ ..||+|++|+ ||.|||+++|+.|+.. ..+||||+++-..
T Consensus 11 al~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl~~l~~im~~---~p~pVimvsslt~ 85 (350)
T COG2201 11 ALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGLEALRKIMRL---RPLPVIMVSSLTE 85 (350)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHHHHHHHHhcC---CCCcEEEEecccc
Confidence 467888999998888 8889999999999999998 9999999999 9999999999999977 6899999988443
Q ss_pred --hHHHHHHHhCCCCEEEeCCCC
Q 005631 81 --MGLVFKCLSKGAVDFLVKPIR 101 (687)
Q Consensus 81 --~~~av~Am~aGA~DYL~KP~~ 101 (687)
.+...+|++.||.||+.||..
T Consensus 86 ~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 86 EGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ccHHHHHHHHhcCcceeecCCCc
Confidence 678899999999999999974
No 86
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.05 E-value=9.5e-10 Score=112.08 Aligned_cols=102 Identities=10% Similarity=0.126 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHH-HHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL-SKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL-~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
+...+..+|+ .++.++..+.++.++++.+. .|||||+|+ ||+++|++++ +.|+.. .|.++||++|.+.+
T Consensus 22 ~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~--~p~~~vvvlt~~~~-- 92 (216)
T PRK10100 22 QATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRK--NNNIKILLLNTPED-- 92 (216)
T ss_pred hhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHh--CCCCcEEEEECCch--
Confidence 3445555665 55666778999999998743 499999999 9999999997 567766 58999999999877
Q ss_pred HHHHHHh--CCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLS--KGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~--aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
....++. .||.+||.|+.+.++|..+|+.+++.
T Consensus 93 ~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 93 YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 4455555 59999999999999999999988653
No 87
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-09 Score=107.82 Aligned_cols=110 Identities=20% Similarity=0.294 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
+.+..+...|...||.+|+++.++.++.+.+.. ..||+||+|+ ||..|-++-+.+... .+..|||++|++.++.
T Consensus 16 i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~rd~~e~~~~~~~---~~~~piv~lt~~s~p~ 90 (194)
T COG3707 16 LTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPRRDIIEALLLASE---NVARPIVALTAYSDPA 90 (194)
T ss_pred cchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCCccHHHHHHHhhc---CCCCCEEEEEccCChH
Confidence 345667778888999999999999999999998 9999999999 999994444444433 3678999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+..++.+|+..||+||++...|+..|.-+..++..
T Consensus 91 ~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 91 LIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred HHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999988777655443
No 88
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.02 E-value=1.7e-09 Score=125.92 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|...||. |..+.++.++++.+.. ..|||||+|+ ||+++|++++++|+.. .+.+|||++|+..+...
T Consensus 19 ~~~~l~~~l~~~~~~-v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~~--~~~~piI~lt~~~~~~~ 93 (665)
T PRK13558 19 AGPVDCDLDEDGRLD-VTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQT--TAVPPVVVVPTAGDEAV 93 (665)
T ss_pred hHHHHHHHhhccCcc-eEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHhc--CCCCCEEEEECCCCHHH
Confidence 345566668888997 7889999999999987 7899999999 9999999999999976 58899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCH--HHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRK--NELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~--eeL~~~L~~alr~ 115 (687)
+.++++.||.|||.||... .+|...++.++..
T Consensus 94 ~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 94 ARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred HHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999753 3555566655543
No 89
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.98 E-value=9.2e-09 Score=84.97 Aligned_cols=102 Identities=27% Similarity=0.457 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
...+...+...|+. +..+.+..+++..+.. ..+|+||+|. +++.+|+++++.++.. .+.+|+|+++........
T Consensus 10 ~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~ 84 (113)
T cd00156 10 RELLRRLLEKEGYE-VVEAEDGEEALALLAE--EKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTAHGDDEDA 84 (113)
T ss_pred HHHHHHHHhhcCce-EEEecCHHHHHHHHHh--CCCCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEEecccHHHH
Confidence 44556666777887 6889999999999987 7899999999 9999999999999876 478999999988888889
Q ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 85 v~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
.+++..|+.+|+.||+...+|...+.++
T Consensus 85 ~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 85 VEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred HHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 9999999999999999999998887653
No 90
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.97 E-value=2.2e-10 Score=134.65 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=69.4
Q ss_pred CCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 162 GDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 162 ~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.+++|.+..++....+....+.++.|||| +||+||||+++|++||..|.|.++|||.|| |+++++.++|++||||
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI-~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~----c~~~~~~~~~~~lfg~ 450 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLI-LGETGTGKELIARAIHNLSGRNNRRMVKMN----CAAMPAGLLESDLFGH 450 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEE-ECCCCcCHHHHHHHHHHhcCCCCCCeEEEe----cccCChhHhhhhhcCc
Confidence 35778877787777777777899999999 899999999999999999999999999999 9999999999999999
Q ss_pred cc
Q 005631 242 DL 243 (687)
Q Consensus 242 ~l 243 (687)
.-
T Consensus 451 ~~ 452 (686)
T PRK15429 451 ER 452 (686)
T ss_pred cc
Confidence 43
No 91
>PRK09191 two-component response regulator; Provisional
Probab=98.94 E-value=1.1e-08 Score=104.31 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+...|+..|+.++..+.++.++++.+.. ..|||||+|+ ||+ ++|+++++.++.. . .+|||++|+..+..
T Consensus 149 ~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~--~-~~pii~ls~~~~~~ 223 (261)
T PRK09191 149 IAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKT--F-DVPVIFITAFPERL 223 (261)
T ss_pred HHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHh--C-CCCEEEEeCCCcHH
Confidence 34556777788899855579999999999987 7899999999 995 8999999999876 3 79999999987654
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.. +...|+.+||.||++.++|...|++++.+.
T Consensus 224 ~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 224 LT--GERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred HH--HHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 43 344678999999999999999999876653
No 92
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=98.87 E-value=2.4e-08 Score=100.97 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhhCCCccEEEEc--c-CCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 005631 4 LLAMLLLLCFEIAV--MKVITEATNGLQAWKILEDLTNHIDLVLTE--V-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 4 ~~r~ll~~lLe~~G--~~~V~~A~sg~eALe~L~~~~~~pDLVLlD--l-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
+++.-++.+|+..+ +.+|..+.++.++++.+.. ..|||||+| . ||..+|++++++|++. +|.++|||+|++
T Consensus 11 ~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~--~p~~~iivlt~~ 86 (207)
T PRK15411 11 YTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQ--HPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHH--CCCCeEEEEECC
Confidence 44556666666544 4678899999999999987 789999999 4 6777899999999977 589999999999
Q ss_pred CChHHHHHHHhCCCCE-EEeCCCCHHHHHHHHHHHHHH
Q 005631 79 DSMGLVFKCLSKGAVD-FLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 79 ~d~~~av~Am~aGA~D-YL~KP~~~eeL~~~L~~alr~ 115 (687)
++..... ++..|+.. |+.|+.++++|..+|+.++..
T Consensus 87 ~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 87 ANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred CchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 8876543 55555544 899999999999999887643
No 93
>PRK13557 histidine kinase; Provisional
Probab=98.76 E-value=7.1e-08 Score=107.59 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+..||. +..+.++.++++.+.. ...||+||+|. ||+ ++|+++++.|+.. .+.+|||+++.+.+..
T Consensus 427 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~~~~~~~~l~~~--~~~~~ii~~~~~~~~~ 502 (540)
T PRK13557 427 VAELARMILEDFGYR-TLVASNGREALEILDS-HPEVDLLFTDLIMPGGMNGVMLAREARRR--QPKIKVLLTTGYAEAS 502 (540)
T ss_pred HHHHHHHHHHhcCCe-EEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCCHHHHHHHHHHh--CCCCcEEEEcCCCchh
Confidence 455677778888998 6789999999999865 13699999999 997 9999999999986 4789999999999988
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
....++..|+++||.||++.++|...|+.++.
T Consensus 503 ~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 503 IERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred hhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 88999999999999999999999999887654
No 94
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.75 E-value=8.7e-08 Score=114.99 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
..+..+...|...||+ |..+.++.+|++.+......||+||+ .||+++|++++..|+.. .+.+|||++|+......
T Consensus 708 ~~~~~l~~~L~~~G~~-v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~~--~~~ipIIvls~~~~~~~ 783 (828)
T PRK13837 708 ATLERYEEKLAALGYE-PVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHAA--APTLPIILGGNSKTMAL 783 (828)
T ss_pred HHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHhh--CCCCCEEEEeCCCchhh
Confidence 3456677788889999 67899999999999762234799999 47999999999999876 58999999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+++..| +|||.||++..+|..+|.++++..
T Consensus 784 ~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 784 SPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred hhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999999 999999999999999999887643
No 95
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.65 E-value=9.4e-08 Score=99.28 Aligned_cols=105 Identities=25% Similarity=0.429 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..+...+.....++.+..+.++.++++.+.. ..||++|+|+ ||+++|+++...|+.. .+..+||++|++.. .
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~~~G~ela~~i~~~--~~~~~Ivfvt~~~~--~ 87 (244)
T COG3279 14 REELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPDINGIELAARIRKG--DPRPAIVFVTAHDE--Y 87 (244)
T ss_pred HHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCccchHHHHHHhccc--CCCCeEEEEEehHH--H
Confidence 33444444433455556689999999999998 7999999999 9999999999999987 47889999999864 8
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+..+++..|.|||.||+..++|...+.+..++
T Consensus 88 a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 88 AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 88888999999999999999999999887665
No 96
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.58 E-value=2e-08 Score=94.75 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=55.3
Q ss_pred CCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhh
Q 005631 166 DDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFA 237 (687)
Q Consensus 166 G~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESe 237 (687)
|.++.|+....+....+.+..||+| +||.||||+++|++||..+.+...||+.++ |..+|..+++..
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli-~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~----~~~~~~~~l~~a 68 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLI-TGEPGTGKSLLARALHRYSGRANGPFIVID----CASLPAELLEQA 68 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEE-ECCTTSSHHHHHHCCHHTTTTCCS-CCCCC----HHCTCHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEE-EcCCCCCHHHHHHHHHhhcCccCCCeEEec----hhhCcHHHHHHc
Confidence 5666666655556666799999999 899999999999999999999999999999 999998887763
No 97
>PRK15029 arginine decarboxylase; Provisional
Probab=98.28 E-value=6e-06 Score=97.96 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHH----HHHHHHHhhcCCCCceEEEEecC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV----ALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGl----eLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
.+...+...|+..||+ |..+.++.+|++.+.. ...||+||+|+ ||+++|+ +++++||+. .+++||||+|+.
T Consensus 19 ~i~~~L~~~Le~~G~e-V~~a~s~~dAl~~l~~-~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~~--~~~iPIIlLTar 94 (755)
T PRK15029 19 NAVERLADALSQQNVT-VIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIGKLHER--QQNVPVFLLGDR 94 (755)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHh-cCCCcEEEEECCCCCCccchhHHHHHHHHHhh--CCCCCEEEEEcC
Confidence 3577788899999999 7899999999999975 13799999999 9999997 899999975 479999999999
Q ss_pred CC--hHHHHHHHhCCCCEEEeCCCCHHHH-HHHHHHHHHHHh
Q 005631 79 DS--MGLVFKCLSKGAVDFLVKPIRKNEL-KNLWQHVWRRCH 117 (687)
Q Consensus 79 ~d--~~~av~Am~aGA~DYL~KP~~~eeL-~~~L~~alr~~~ 117 (687)
.+ .......++ -+..|+.+--+..++ ...|..+.++..
T Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 95 EKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred CcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 86 333333222 267788887554444 344555555443
No 98
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.98 E-value=6.4e-06 Score=91.94 Aligned_cols=88 Identities=32% Similarity=0.467 Sum_probs=79.0
Q ss_pred EEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 21 V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
|.++..+.+|+..+.. +.||++|+|+ ||+++|+++++.+++.+ .. |||+|...+...-++.+++||.+||+||
T Consensus 15 v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~---~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 15 VATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEP---AT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCC---cc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 5679999999999998 9999999999 99999999999999874 33 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 005631 100 IRKNELKNLWQHVWR 114 (687)
Q Consensus 100 ~~~eeL~~~L~~alr 114 (687)
+....+...+....+
T Consensus 89 ~~~~~~~~r~~~l~~ 103 (435)
T COG3706 89 VNDSQLFLRAKSLVR 103 (435)
T ss_pred CChHHHHHhhhhhcc
Confidence 998888877766543
No 99
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.44 E-value=0.00093 Score=80.48 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..|+. |..+.++.+ +.. ..||+||+|+ ||++.+...+............++|+++......
T Consensus 547 ~~~~~l~~~L~~~g~~-v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 619 (919)
T PRK11107 547 AAAQATLDILSETPLE-VTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQV 619 (919)
T ss_pred HHHHHHHHHHHHCCCE-EEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchh
Confidence 3567788899999998 778888887 344 6899999999 9998877655554433323456788889988899
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
....+.+.|+.+||.||+...+|...+....
T Consensus 620 ~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 620 LAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred hHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999988887654
No 100
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.13 E-value=0.00021 Score=82.33 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=49.0
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhc------Cccc-CCCceecCChhhhhh--hhhhh
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSN------AEIT-GSRRVPVTAAKECQD--HEERC 233 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~------S~R~-~~pFV~vn~~~~C~a--ipe~L 233 (687)
+++|+...++... .+..+..+.+||| +||+||||+++||+||.. |++. +.|||.+| |.. .++..
T Consensus 66 ~iiGqs~~i~~l~--~al~~~~~~~vLi-~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id----~~~~~~~~~~ 138 (531)
T TIGR02902 66 EIIGQEEGIKALK--AALCGPNPQHVII-YGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID----ATTARFDERG 138 (531)
T ss_pred HeeCcHHHHHHHH--HHHhCCCCceEEE-ECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc----cccccCCccc
Confidence 5666655554332 2234567788999 899999999999999863 5554 68999999 874 34433
Q ss_pred hhhhccC
Q 005631 234 ENFAKRS 240 (687)
Q Consensus 234 ~ESelFG 240 (687)
++..|||
T Consensus 139 ~~~~li~ 145 (531)
T TIGR02902 139 IADPLIG 145 (531)
T ss_pred cchhhcC
Confidence 4445555
No 101
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.79 E-value=0.00068 Score=72.00 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=56.1
Q ss_pred CCCcccccchhhhhhh------cCCCCccccCCCCCCCChhHHHHHhhhcC---cccCCCceecCChhhhhhhhhhhhhh
Q 005631 166 DDGSGTQSSWTKKAVE------VDSPRHMSPSDQLAECPDSTCAQVIHSNA---EITGSRRVPVTAAKECQDHEERCENF 236 (687)
Q Consensus 166 G~G~~aqS~~~k~~~e------a~S~~~Vli~~GEsGTGKEl~AraIH~~S---~R~~~pFV~vn~~~~C~aipe~L~ES 236 (687)
-.|++...++..+..| ++|.+|||+ .|+||.||+.+||-|...- .-.+++||-|| |+-+-..-.=|
T Consensus 183 ksgiatrnp~fnrmieqierva~rsr~p~ll-~gptgagksflarriyelk~arhq~sg~fvevn----catlrgd~ams 257 (531)
T COG4650 183 KSGIATRNPHFNRMIEQIERVAIRSRAPILL-NGPTGAGKSFLARRIYELKQARHQFSGAFVEVN----CATLRGDTAMS 257 (531)
T ss_pred HhcccccChHHHHHHHHHHHHHhhccCCeEe-ecCCCcchhHHHHHHHHHHHHHHhcCCceEEEe----eeeecCchHHH
Confidence 3455555555444333 489999999 8999999999999874332 22356899999 99999999999
Q ss_pred hccCCcc
Q 005631 237 AKRSRDL 243 (687)
Q Consensus 237 elFGh~l 243 (687)
.||||--
T Consensus 258 alfghvk 264 (531)
T COG4650 258 ALFGHVK 264 (531)
T ss_pred HHHhhhc
Confidence 9999954
No 102
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.36 E-value=0.0015 Score=68.55 Aligned_cols=50 Identities=8% Similarity=-0.096 Sum_probs=41.7
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+.+..+|++ .|++||||+++|++||. +.+.||+.++ |.. .+..+.|+|..
T Consensus 18 l~~g~~vLL-~G~~GtGKT~lA~~la~---~lg~~~~~i~----~~~---~~~~~dllg~~ 67 (262)
T TIGR02640 18 LKSGYPVHL-RGPAGTGKTTLAMHVAR---KRDRPVMLIN----GDA---ELTTSDLVGSY 67 (262)
T ss_pred HhcCCeEEE-EcCCCCCHHHHHHHHHH---HhCCCEEEEe----CCc---cCCHHHHhhhh
Confidence 578889999 89999999999999996 5578999999 875 55556777764
No 103
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.24 E-value=0.0023 Score=75.07 Aligned_cols=75 Identities=11% Similarity=-0.039 Sum_probs=51.0
Q ss_pred ccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcc-------cCCCceecCChhhhhhhhhh
Q 005631 160 NGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEI-------TGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 160 ~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R-------~~~pFV~vn~~~~C~aipe~ 232 (687)
...+++|+...++.... ..+...+.+|+| .||+||||+++||+||..+.+ .+.+||.++ |..++..
T Consensus 152 ~~~~iiGqs~~~~~l~~--~ia~~~~~~vlL-~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~----~~~l~~d 224 (615)
T TIGR02903 152 AFSEIVGQERAIKALLA--KVASPFPQHIIL-YGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD----GTTLRWD 224 (615)
T ss_pred cHHhceeCcHHHHHHHH--HHhcCCCCeEEE-ECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe----chhccCC
Confidence 34567777766654322 223456666888 799999999999999987743 467999999 9887422
Q ss_pred h--hhhhccCC
Q 005631 233 C--ENFAKRSR 241 (687)
Q Consensus 233 L--~ESelFGh 241 (687)
. +...+||.
T Consensus 225 ~~~i~~~llg~ 235 (615)
T TIGR02903 225 PREVTNPLLGS 235 (615)
T ss_pred HHHHhHHhcCC
Confidence 1 23345663
No 104
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.80 E-value=0.075 Score=49.18 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=76.9
Q ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHH
Q 005631 9 LLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 86 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~ 86 (687)
+...|+..|++ |..+.+.++++..++. ...++.|++|+ -. .....++++.|+.. ...+||.+++.....+.+-.
T Consensus 9 l~~~L~~~~~~-vv~~~~~dd~~~~i~~-~~~i~avvi~~d~~~~~~~~~ll~~i~~~--~~~iPVFl~~~~~~~~~l~~ 84 (115)
T PF03709_consen 9 LAEALEQRGRE-VVDADSTDDALAIIES-FTDIAAVVISWDGEEEDEAQELLDKIRER--NFGIPVFLLAERDTTEDLPA 84 (115)
T ss_dssp HHHHHHHTTTE-EEEESSHHHHHHHHHC-TTTEEEEEEECHHHHHHHHHHHHHHHHHH--STT-EEEEEESCCHHHCCCH
T ss_pred HHHHHHHCCCE-EEEeCChHHHHHHHHh-CCCeeEEEEEcccccchhHHHHHHHHHHh--CCCCCEEEEecCCCcccCCH
Confidence 44455668999 6799999999999986 35688899986 11 13456899999988 58999999999776665555
Q ss_pred HHhCCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 005631 87 CLSKGAVDFLVKPI-RKNELKNLWQHVWRR 115 (687)
Q Consensus 87 Am~aGA~DYL~KP~-~~eeL~~~L~~alr~ 115 (687)
.+-.-+..||...- +++.+-..|..+.++
T Consensus 85 ~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 85 EVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp HHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 66677899999985 456666667776654
No 105
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.67 E-value=0.0059 Score=42.56 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCccchh
Q 005631 630 ADREAAVTKYRQKKTERCFRKKVRYQ 655 (687)
Q Consensus 630 ~~r~~~~~r~~~kr~~r~~~k~iry~ 655 (687)
..|.+.|.||.||||.|++. +.-|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 46999999999999999998 66664
No 106
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.49 E-value=0.0078 Score=72.81 Aligned_cols=44 Identities=7% Similarity=-0.171 Sum_probs=39.9
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccC----CCceecCChhhhhhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITG----SRRVPVTAAKECQDHE 230 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~----~pFV~vn~~~~C~aip 230 (687)
++.+.+||| .|++||||+++||+||..++|.. ++|+.++ |.+..
T Consensus 489 iRgdihVLL-vGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg----LTa~~ 536 (915)
T PTZ00111 489 FRGIINVLL-CGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG----LTASI 536 (915)
T ss_pred ccCCceEEE-eCCCCccHHHHHHHHHHhCCccccCCCCCCcccc----ccchh
Confidence 467889999 79999999999999999999997 8999999 88863
No 107
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.45 E-value=0.0075 Score=68.72 Aligned_cols=56 Identities=5% Similarity=-0.242 Sum_probs=44.9
Q ss_pred hhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhh-hhhhhhhhhhccCCc
Q 005631 176 TKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQ-DHEERCENFAKRSRD 242 (687)
Q Consensus 176 ~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~-aipe~L~ESelFGh~ 242 (687)
......+-+..+||+ .|++||||+++|++||..+.++. +|+.++ |. ..| ++|||+.
T Consensus 30 ~lll~aalag~hVLL-~GpPGTGKT~LAraLa~~~~~~~-~F~~~~----~~fttp-----~DLfG~l 86 (498)
T PRK13531 30 RLCLLAALSGESVFL-LGPPGIAKSLIARRLKFAFQNAR-AFEYLM----TRFSTP-----EEVFGPL 86 (498)
T ss_pred HHHHHHHccCCCEEE-ECCCChhHHHHHHHHHHHhcccC-cceeee----eeecCc-----HHhcCcH
Confidence 334444578899999 79999999999999999999886 999988 76 345 3778863
No 108
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.25 E-value=0.012 Score=59.33 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=39.6
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERC 233 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L 233 (687)
.....+|++ +|++||||+.+|++||....+...+|+-++ |..+...+
T Consensus 35 ~~~~~~lll-~G~~G~GKT~la~~~~~~~~~~~~~~~~i~----~~~~~~~~ 81 (226)
T TIGR03420 35 GKGDRFLYL-WGESGSGKSHLLQAACAAAEERGKSAIYLP----LAELAQAD 81 (226)
T ss_pred cCCCCeEEE-ECCCCCCHHHHHHHHHHHHHhcCCcEEEEe----HHHHHHhH
Confidence 455667888 899999999999999998877778999999 98887543
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.14 E-value=0.01 Score=72.32 Aligned_cols=48 Identities=4% Similarity=-0.124 Sum_probs=42.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS 240 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFG 240 (687)
+|+ .|++||||..+|++||....+.+.+||.++ |....+....+.|||
T Consensus 601 ~Lf-~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id----~se~~~~~~~~~LiG 648 (857)
T PRK10865 601 FLF-LGPTGVGKTELCKALANFMFDSDDAMVRID----MSEFMEKHSVSRLVG 648 (857)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHhhcCCCcEEEEE----hHHhhhhhhHHHHhC
Confidence 455 899999999999999998888888999999 999888887888876
No 110
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=94.78 E-value=0.11 Score=55.87 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=53.6
Q ss_pred EEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEE-ecCCChHHHHHHHhCCCCEEEeC
Q 005631 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM-SSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 21 V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvm-Ta~~d~~~av~Am~aGA~DYL~K 98 (687)
+..+.+..++-+... .-.+||+|. +-. .+...+ .+ +...||++ ....+.+....||+.||.|||.+
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~--~p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 4 LDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAG--LP--RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred eEEccCchhhhhccc----cCCeEEECchhhh----HHHhcc--CC--CCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 456666666654443 367899986 411 111111 22 23335544 44667999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 005631 99 PIRKNELKNLWQHV 112 (687)
Q Consensus 99 P~~~eeL~~~L~~a 112 (687)
|++..+|...|.++
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999998888654
No 111
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=94.58 E-value=0.014 Score=59.43 Aligned_cols=42 Identities=45% Similarity=0.756 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCccchhhhhhhhhhCCCccc
Q 005631 628 KFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRG 669 (687)
Q Consensus 628 ~~~~r~~~~~r~~~kr~~r~~~k~iry~~rk~~a~~r~r~~g 669 (687)
....|++.+.||+++++.|.|.++++|..||..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 457799999999999999999999999999999999999999
No 112
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.45 E-value=0.94 Score=42.14 Aligned_cols=101 Identities=7% Similarity=-0.065 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCCCC--HHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCLS--GVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~md--GleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++.. ....++.++.+.+ ..||+|.+-. ++..- --++++.|++.. +.-..|++-+...
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~--~~~i~i~~GG~~~ 91 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELG--AGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcC--CCCCEEEEECCCC
Confidence 356778899999995443 3446788888888 8999999988 75422 245777777762 3344566666566
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
.+...+..++|.+.||-.--..++....|+
T Consensus 92 ~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 92 PEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 677888889999999999888888776654
No 113
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.37 E-value=1.3 Score=42.24 Aligned_cols=106 Identities=9% Similarity=-0.017 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCceEEEEecCC
Q 005631 5 LAMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdG-leLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
...++..+|+..||+++.. ..+.++.++.+.+ ..+|+|.+-. +.. +.. -++++.|++.. ...+ .||+-+.-
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g-~~~i-~vivGG~~ 93 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLG-RPDI-LVVVGGVI 93 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcC-CCCC-EEEEeCCC
Confidence 3467888999999996554 3467889999888 8999999876 532 222 24667777653 2233 34455444
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
..+...+..++|+++|+..--+..++...|.+.+.
T Consensus 94 ~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 94 PPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred ChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 45567788899999999988899888888877553
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.33 E-value=0.024 Score=69.18 Aligned_cols=49 Identities=6% Similarity=-0.180 Sum_probs=41.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRS 240 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFG 240 (687)
++++.|++||||+.+|++||...-+...+||.+| |....+....+.|+|
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d----~s~~~~~~~~~~l~g 645 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID----MSEYMEKHSVARLIG 645 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe----chhhcccchHHHhcC
Confidence 3444899999999999999999888889999999 988877766666654
No 115
>PHA02244 ATPase-like protein
Probab=94.27 E-value=0.025 Score=62.63 Aligned_cols=53 Identities=9% Similarity=-0.129 Sum_probs=40.0
Q ss_pred CCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 165 SDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 165 sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++..+.++.........+....||+| .|++||||..+|++||.. .+.||+.++
T Consensus 99 ig~sp~~~~~~~ri~r~l~~~~PVLL-~GppGtGKTtLA~aLA~~---lg~pfv~In 151 (383)
T PHA02244 99 IASNPTFHYETADIAKIVNANIPVFL-KGGAGSGKNHIAEQIAEA---LDLDFYFMN 151 (383)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCEEE-ECCCCCCHHHHHHHHHHH---hCCCEEEEe
Confidence 34444444444444444688999999 799999999999999987 456999988
No 116
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.24 E-value=0.03 Score=59.71 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=37.0
Q ss_pred ccccCCCCCCCChhHHH----HHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 187 HMSPSDQLAECPDSTCA----QVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~A----raIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+|++ .|++||||.++| +.+|..+.+..++||.++ |..+ +. .+||+.
T Consensus 60 ~vll-~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~----~~~l----~~-~~~g~~ 109 (284)
T TIGR02880 60 HMSF-TGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT----RDDL----VG-QYIGHT 109 (284)
T ss_pred eEEE-EcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec----HHHH----hH-hhcccc
Confidence 5777 799999999999 888999988888999999 7543 33 456754
No 117
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.08 E-value=0.022 Score=62.60 Aligned_cols=27 Identities=7% Similarity=-0.213 Sum_probs=23.2
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCccc
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEIT 213 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~ 213 (687)
..||| .|++||||+++||+||...++.
T Consensus 39 ~~vli-~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 39 GGVMI-MGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CeEEE-EcCCCCCHHHHHHHHHHHHhhc
Confidence 34888 8999999999999999887753
No 118
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=93.96 E-value=0.042 Score=64.96 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=23.0
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
...||| .|+.||||+++||+||...+
T Consensus 25 ~g~vli-~G~~GtgKs~lar~l~~~lp 50 (633)
T TIGR02442 25 IGGVLI-RGEKGTAKSTAARGLAALLP 50 (633)
T ss_pred CCeEEE-EcCCCCcHHHHHHHHHHhCC
Confidence 345888 89999999999999999885
No 119
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=93.59 E-value=0.036 Score=64.99 Aligned_cols=44 Identities=9% Similarity=-0.162 Sum_probs=35.4
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.||| .|+.||||+++||+||..+++ ..|||.+. |...+ ..|||.
T Consensus 18 ~vLl-~G~~GtgKs~lar~l~~~~~~-~~pfv~i~----~~~t~-----d~L~G~ 61 (589)
T TIGR02031 18 GVAI-RARAGTGKTALARALAEILPP-IMPFVELP----LGVTE-----DRLIGG 61 (589)
T ss_pred eEEE-EcCCCcHHHHHHHHHHHhCCc-CCCeEecC----cccch-----hhcccc
Confidence 4888 899999999999999999998 45999998 65443 355554
No 120
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.25 E-value=1.8 Score=41.57 Aligned_cols=104 Identities=12% Similarity=-0.037 Sum_probs=75.7
Q ss_pred HHHHHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCCC--CHHHHHHHHHhhcCCCCceEEEEecCC--
Q 005631 7 MLLLLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRKNLPVIMMSSLD-- 79 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~m--dGleLL~~Ir~~~~~p~iPVIvmTa~~-- 79 (687)
.++..+|+..||+++..- -..++.++.+.+ ..||+|.+-. |... .-.+++++|++.. .++++|+ +-+..
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~-~~~~~i~-vGG~~~~ 96 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCIEAG-LGDILLY-VGGNLVV 96 (137)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHHhcC-CCCCeEE-EECCCCC
Confidence 467788999999965543 456888888888 8999999988 7643 2346788887763 3466544 44432
Q ss_pred ----ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 80 ----SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 80 ----d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
..+...++.+.|.+.++...-+.+++...|++.|.
T Consensus 97 ~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 97 GKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred CccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 24455678889988888888899999988887764
No 121
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.20 E-value=0.19 Score=57.81 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=31.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ai 229 (687)
..+..||+ .|++||||.++|++|= ...+-||+.++ |+.+
T Consensus 257 ~~pkGILL-~GPpGTGKTllAkaiA---~e~~~~~~~l~----~~~l 295 (489)
T CHL00195 257 PTPRGLLL-VGIQGTGKSLTAKAIA---NDWQLPLLRLD----VGKL 295 (489)
T ss_pred CCCceEEE-ECCCCCcHHHHHHHHH---HHhCCCEEEEE----hHHh
Confidence 45566888 8999999999999993 44567999999 7653
No 122
>smart00350 MCM minichromosome maintenance proteins.
Probab=92.78 E-value=0.051 Score=62.56 Aligned_cols=49 Identities=4% Similarity=-0.102 Sum_probs=37.2
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCE 234 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ 234 (687)
+.++.+||+ .|+.||||+++||+||..++|. +|+... .-.|..++...+
T Consensus 233 ~r~~~~vLL-~G~pGtGKs~lar~l~~~~~r~--~~~~~~-~~~~~~l~~~~~ 281 (509)
T smart00350 233 IRGDINILL-LGDPGTAKSQLLKYVEKTAPRA--VYTTGK-GSSAVGLTAAVT 281 (509)
T ss_pred ccccceEEE-eCCCChhHHHHHHHHHHHcCcc--eEcCCC-CCCcCCccccce
Confidence 357778999 7999999999999999999986 687731 112666655443
No 123
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=92.78 E-value=0.78 Score=42.15 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.++.-+..+|+..|+. +..+.+ .+......+ ...+.+++-. .+ ...++++.+.+. .+.+|||++......
T Consensus 10 ~R~~~L~~ILeFlGe~-~~~~~~-~~~~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~~--~~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 10 ERRQRLSTILEFLGEQ-CEAVSS-SDWSQADWS--SPWEACAVILGSCS--KLAELLKELLKW--APHIPVLLLGEHDSP 81 (109)
T ss_pred HHHHhhhhhhhhcCCC-eEEecH-HHHHHhhhh--cCCcEEEEEecCch--hHHHHHHHHHhh--CCCCCEEEECCCCcc
Confidence 3677788999999999 444544 333344444 4555555544 43 556788888877 599999999887765
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
... ..+..-|..|++..+|...|+++
T Consensus 82 ~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 82 EEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 111 11667799999999999998865
No 124
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.63 E-value=0.066 Score=54.44 Aligned_cols=45 Identities=13% Similarity=-0.045 Sum_probs=37.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
.+..+|++ +|++||||..+|++||....+.+.+++.++ |..+.+.
T Consensus 40 ~~~~~~~l-~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~~~~~ 84 (227)
T PRK08903 40 VADRFFYL-WGEAGSGRSHLLQALVADASYGGRNARYLD----AASPLLA 84 (227)
T ss_pred CCCCeEEE-ECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHHhHHH
Confidence 45567888 899999999999999998877888999999 8776543
No 125
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=92.63 E-value=1.1 Score=40.95 Aligned_cols=87 Identities=7% Similarity=0.004 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCeEEE--EeCCHHHHHHHHHhhCCCccEEEEcc-CCCC--CHHHHHHHHHhhcCCC-CceEEEEecCCC
Q 005631 7 MLLLLCFEIAVMKVIT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRK-NLPVIMMSSLDS 80 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~--~A~sg~eALe~L~~~~~~pDLVLlDl-MP~m--dGleLL~~Ir~~~~~p-~iPVIvmTa~~d 80 (687)
.++..+|+..||+++. .....++.++.+.+ ..||+|.+-. +... ...++++.+++. .+ +++ |++.+..-
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~--~~~~~~-i~vGG~~~ 91 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEA--GLDDIP-VLVGGAIV 91 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHc--CCCCCe-EEEECCCC
Confidence 5678889999999544 23456788888888 8999999987 6543 356788888876 35 555 45555544
Q ss_pred hHHHHHHHhCCCCEEEeC
Q 005631 81 MGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~K 98 (687)
......+...|++.|+..
T Consensus 92 ~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 92 TRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred ChhHHHHHHcCCeEEECC
Confidence 444457788898666653
No 126
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.49 E-value=1.3 Score=46.49 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEE--ccCC---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 11 LCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLT--EVMP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 11 ~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLl--DlMP---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
..|-..||.++ .++.|...|.++.. ..+++|.- .... +..-.++++.|++. ..+|||+=.+-...+.+
T Consensus 117 ~~L~~~Gf~vlpyc~dd~~~ar~l~~---~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda 190 (248)
T cd04728 117 EILVKEGFTVLPYCTDDPVLAKRLED---AGCAAVMPLGSPIGSGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDA 190 (248)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHH
Confidence 33446799987 78888888877765 36777722 1100 22226889999876 57999999999999999
Q ss_pred HHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 005631 85 FKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 85 v~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr~~~ 117 (687)
.+||+.||+..++ |--++..+...+..+++.-+
T Consensus 191 ~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 191 AQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999986 43456777777776665543
No 127
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.29 E-value=1.5 Score=46.20 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=72.9
Q ss_pred HHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEE--ccCC---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 11 LCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLT--EVMP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 11 ~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLl--DlMP---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
..|-..||.++ .++.|...|.++.. ..+++|.- .... +..-.++++.|++. ..+|||+=.+-...+.+
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~---~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda 190 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE---AGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDA 190 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHH
Confidence 33446799987 78888888877765 36887722 1100 12226789999876 57999999999999999
Q ss_pred HHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 005631 85 FKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 85 v~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr~~~ 117 (687)
.+||+.||+..|+ |--++..+...+..+++.-+
T Consensus 191 ~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 191 AQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999986 44456777777777665543
No 128
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.01 E-value=0.09 Score=59.14 Aligned_cols=48 Identities=6% Similarity=-0.080 Sum_probs=36.3
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCccc
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLD 244 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~ 244 (687)
...||+ .|++||||.++|++||.. .+-||+.++ |..+. +...+|+|.+
T Consensus 116 ~~~iLL-~GP~GsGKT~lAraLA~~---l~~pf~~~d----a~~L~----~~gyvG~d~e 163 (413)
T TIGR00382 116 KSNILL-IGPTGSGKTLLAQTLARI---LNVPFAIAD----ATTLT----EAGYVGEDVE 163 (413)
T ss_pred CceEEE-ECCCCcCHHHHHHHHHHh---cCCCeEEec----hhhcc----ccccccccHH
Confidence 446788 799999999999999954 456999999 87653 3346677653
No 129
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.96 E-value=0.088 Score=59.21 Aligned_cols=39 Identities=8% Similarity=-0.113 Sum_probs=31.8
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
..+||+ .|++||||.++||+||.. .+.||+.++ |..+.+
T Consensus 108 ~~~iLl-~Gp~GtGKT~lAr~lA~~---l~~pf~~id----~~~l~~ 146 (412)
T PRK05342 108 KSNILL-IGPTGSGKTLLAQTLARI---LDVPFAIAD----ATTLTE 146 (412)
T ss_pred CceEEE-EcCCCCCHHHHHHHHHHH---hCCCceecc----hhhccc
Confidence 345777 799999999999999954 467999999 876543
No 130
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.66 E-value=3.7 Score=39.42 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCceEEEEecCC--
Q 005631 7 MLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIMMSSLD-- 79 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdG-leLL~~Ir~~~~~p~iPVIvmTa~~-- 79 (687)
.++..+|+..||+++.. .-+.++.++.+.+ ..+|+|.+-. |.. +.. -++.+.|++.. ...+ +||+-+..
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~g-l~~~-~vivGG~~vi 94 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAG-LEGI-LLYVGGNLVV 94 (134)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCC-CCCC-EEEecCCcCc
Confidence 56788999999996544 4577889999988 8999999988 643 222 34666777663 2344 46666631
Q ss_pred -ChH---HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 80 -SMG---LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 80 -d~~---~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
..+ ...++.+.|.+..+...-.++++...|++.|+
T Consensus 95 ~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 95 GKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred ChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 222 23467889988888888889999988887653
No 131
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.19 E-value=4.9 Score=40.15 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCC--------CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHH
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCL--------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 86 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~m--------dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~ 86 (687)
.+..+-..+.+..++++.+. ..+|+|.+.. .|.. .|++.++++++. .+.+||++.-+- +.+.+.+
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~v~a~GGI-~~~~i~~ 176 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA--VGDIPIVAIGGI-TPENAPE 176 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHH
Confidence 34444445667778777764 4799999887 6643 468999999876 355898888766 6788999
Q ss_pred HHhCCCCEEEe-----CCCCHHHHHHHHHHH
Q 005631 87 CLSKGAVDFLV-----KPIRKNELKNLWQHV 112 (687)
Q Consensus 87 Am~aGA~DYL~-----KP~~~eeL~~~L~~a 112 (687)
++..||+.+.. +.-++.+....+...
T Consensus 177 ~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 177 VLEAGADGVAVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred HHHcCCCEEEEeHHhhcCCCHHHHHHHHHHH
Confidence 99999999985 433444444444433
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.67 E-value=0.16 Score=56.49 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..+..||+ .|++||||.++|++|+.... .+|+.++ |..+-
T Consensus 163 ~~p~gvLL-~GppGtGKT~lAkaia~~~~---~~~i~v~----~~~l~ 202 (389)
T PRK03992 163 EPPKGVLL-YGPPGTGKTLLAKAVAHETN---ATFIRVV----GSELV 202 (389)
T ss_pred CCCCceEE-ECCCCCChHHHHHHHHHHhC---CCEEEee----hHHHh
Confidence 34556888 89999999999999997655 4799998 76653
No 133
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=89.78 E-value=1.5 Score=30.54 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP 50 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP 50 (687)
...+...+...|+. +..+.+..+++..+.. ..+|+|++|+ ++
T Consensus 13 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 13 RELLKALLEREGYE-VDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred HHHHHHHHhhcCcE-EEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 34455666778888 7788999999999877 7899999998 64
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=89.00 E-value=0.31 Score=52.15 Aligned_cols=33 Identities=21% Similarity=0.057 Sum_probs=28.8
Q ss_pred cccCCCCCCCChhHHHHHh----hhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVI----HSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI----H~~S~R~~~pFV~vn 221 (687)
|++ .|++||||.++|+++ |...-....+|+.|+
T Consensus 62 ill-~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 62 MSF-TGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 566 799999999999999 777777778899998
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.78 E-value=0.74 Score=55.75 Aligned_cols=46 Identities=7% Similarity=-0.101 Sum_probs=37.6
Q ss_pred ccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 189 SPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 189 li~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
+++.|++|+||..+|+++-.. -+.+||.+| |....+....+.|||.
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~---l~~~~i~id----~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKA---LGIELLRFD----MSEYMERHTVSRLIGA 536 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHH---hCCCcEEee----chhhcccccHHHHcCC
Confidence 444899999999999998443 357999999 9988887777888874
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.32 E-value=1.3 Score=53.40 Aligned_cols=47 Identities=6% Similarity=-0.119 Sum_probs=35.5
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
++++.|++||||..+|++|+..- ..+|+.++ |....+...-+.|+|.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d----~se~~~~~~~~~lig~ 532 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL---GVHLERFD----MSEYMEKHTVSRLIGA 532 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh---cCCeEEEe----CchhhhcccHHHHhcC
Confidence 45668999999999999998765 46899999 7766655544555443
No 137
>PRK12704 phosphodiesterase; Provisional
Probab=88.31 E-value=0.74 Score=53.44 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCceEEEEecCCChH--HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 68 KNLPVIMMSSLDSMG--LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 68 p~iPVIvmTa~~d~~--~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+.+|+||+++... .+..+|..++.||++||++++++...++.-+...
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 346689999999987 9999999999999999999999999988766543
No 138
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.28 E-value=0.41 Score=42.98 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=35.7
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCEN 235 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~E 235 (687)
...|+| +|++|+||..+|+.|...-.....+++.++ |.........
T Consensus 19 ~~~v~i-~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~----~~~~~~~~~~ 64 (151)
T cd00009 19 PKNLLL-YGPPGTGKTTLARAIANELFRPGAPFLYLN----ASDLLEGLVV 64 (151)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHhhcCCCCeEEEe----hhhhhhhhHH
Confidence 455777 899999999999999887766677888888 7665554443
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=84.47 E-value=0.72 Score=48.26 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.1
Q ss_pred ccccCCCCCCCChhHHHHHhh----hcCcccCCCceecCChhhhhhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIH----SNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH----~~S~R~~~pFV~vn~~~~C~ai 229 (687)
+|++ .|++||||.++|++|. ........+||.++ |..+
T Consensus 44 ~vll-~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~----~~~l 85 (261)
T TIGR02881 44 HMIF-KGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE----RADL 85 (261)
T ss_pred eEEE-EcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec----HHHh
Confidence 4667 7999999999999993 33444456788887 7553
No 140
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.46 E-value=14 Score=37.58 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--C------CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--M------P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
.++.++..+.+.+++..... ..+|+|.+.. . .....++++++|+.. -.+|||...+-.+.+.+.++
T Consensus 118 ~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---~~iPvia~GGI~t~~~~~~~ 191 (221)
T PRK01130 118 PGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---VGCPVIAEGRINTPEQAKKA 191 (221)
T ss_pred CCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHH
Confidence 67776777888888865544 4689886642 1 123357889999876 37999999988899999999
Q ss_pred HhCCCCEEEeC
Q 005631 88 LSKGAVDFLVK 98 (687)
Q Consensus 88 m~aGA~DYL~K 98 (687)
++.||+.++.=
T Consensus 192 l~~GadgV~iG 202 (221)
T PRK01130 192 LELGAHAVVVG 202 (221)
T ss_pred HHCCCCEEEEc
Confidence 99999988764
No 141
>CHL00176 ftsH cell division protein; Validated
Probab=84.08 E-value=0.61 Score=55.41 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=32.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
..+..||+ .|++||||.++|++|-. ..+.||+.++ |..+.+
T Consensus 214 ~~p~gVLL-~GPpGTGKT~LAralA~---e~~~p~i~is----~s~f~~ 254 (638)
T CHL00176 214 KIPKGVLL-VGPPGTGKTLLAKAIAG---EAEVPFFSIS----GSEFVE 254 (638)
T ss_pred CCCceEEE-ECCCCCCHHHHHHHHHH---HhCCCeeecc----HHHHHH
Confidence 44556888 79999999999999943 4577999999 877643
No 142
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.86 E-value=26 Score=33.53 Aligned_cols=100 Identities=11% Similarity=-0.016 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCceEEEEecCC--
Q 005631 7 MLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIMMSSLD-- 79 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdG-leLL~~Ir~~~~~p~iPVIvmTa~~-- 79 (687)
.++..+|+..||+++.. .-+.++.++.+.+ ..+|+|.+-. |.. +.. -++.+.|++.. ..+++ |++-+.-
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~g-l~~v~-vivGG~~~i 92 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAG-LKDIL-LYVGGNLVV 92 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCC-CCCCe-EEEECCCCC
Confidence 46788999999996544 4567888888888 8999999988 654 333 35777777763 23544 4444431
Q ss_pred ---C-hHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 80 ---S-MGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 80 ---d-~~~av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
+ .+...+..++|.+..+...-+++++...|+
T Consensus 93 ~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 93 GKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1 234456778999999998888888877664
No 143
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=83.84 E-value=0.71 Score=53.31 Aligned_cols=48 Identities=4% Similarity=-0.123 Sum_probs=36.6
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcC-------------------------cccCCCceecCChhhhhhhhhhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNA-------------------------EITGSRRVPVTAAKECQDHEERCE 234 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S-------------------------~R~~~pFV~vn~~~~C~aipe~L~ 234 (687)
+....++++ .|++||||+++||.||..- ++...||+.++ |.+....++
T Consensus 208 a~~g~~vll-iG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~----~s~s~~~~~ 280 (499)
T TIGR00368 208 AAGGHNLLL-FGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPH----HSASKPALV 280 (499)
T ss_pred ccCCCEEEE-EecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccc----cccchhhhh
Confidence 466677888 7999999999999999632 23457888888 777766653
No 144
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=83.64 E-value=13 Score=33.61 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCC-C-CHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 7 MLLLLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPC-L-SGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~-m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+|+..||++...- .+.++..+.+.+ ..||+|.+-. +.. . ...++++.+++. .|+++||+=-.+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~--~p~~~iv~GG~~~t- 92 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKER--NPNIPIVVGGPHAT- 92 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTT--CTTSEEEEEESSSG-
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhc--CCCCEEEEECCchh-
Confidence 456777888899953331 345777788888 8999999988 533 2 345677787766 57776665544433
Q ss_pred HHHHHHHh--CCCCEEEeC
Q 005631 82 GLVFKCLS--KGAVDFLVK 98 (687)
Q Consensus 82 ~~av~Am~--aGA~DYL~K 98 (687)
.....+++ .|++..+.-
T Consensus 93 ~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 93 ADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp HHHHHHHHHHHTSEEEEEE
T ss_pred cChHHHhccCcCcceecCC
Confidence 33344554 455554443
No 145
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=83.10 E-value=12 Score=40.55 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=63.2
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-C-C----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-M-P----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-P----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
..++..|..++..+.+.++|.+..+ ..+|.|++.- - . ...-++++.++++. -++|||.--+-.+...+
T Consensus 103 ~~lk~~g~~v~~~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~~~ 176 (307)
T TIGR03151 103 PRLKENGVKVIPVVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGRGM 176 (307)
T ss_pred HHHHHcCCEEEEEcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHHHH
Confidence 3445568877778889999877665 4799988844 2 2 22358899999876 36999999889999999
Q ss_pred HHHHhCCCCEEEeC
Q 005631 85 FKCLSKGAVDFLVK 98 (687)
Q Consensus 85 v~Am~aGA~DYL~K 98 (687)
..++..||+....=
T Consensus 177 ~~al~~GA~gV~iG 190 (307)
T TIGR03151 177 AAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHcCCCEeecc
Confidence 99999999987764
No 146
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=82.95 E-value=14 Score=44.83 Aligned_cols=106 Identities=9% Similarity=-0.045 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCCC--CHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 5 LAMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~m--dGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
...++..+|+..||+++.. ..+.+++.+.+.+ ..+|+|++-. +... ..-++++.|++.. .++++ ||+.+.-
T Consensus 598 ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G-~~~v~-vl~GG~~ 673 (714)
T PRK09426 598 GAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKKLG-REDIM-VVVGGVI 673 (714)
T ss_pred hHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHhcC-CCCcE-EEEeCCC
Confidence 3467888999999996433 2568889898887 8899988765 5432 2456888888763 12333 4455542
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
-.+......+.|+++||..-.+..+++..+++.|.
T Consensus 674 ~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 674 PPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred ChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 34444567789999999999998888887776663
No 147
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=82.66 E-value=12 Score=39.18 Aligned_cols=79 Identities=14% Similarity=0.346 Sum_probs=54.5
Q ss_pred HHHHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCCC-----
Q 005631 29 QAWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS----- 80 (687)
Q Consensus 29 eALe~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~d----- 80 (687)
+.++.+.+ ...|+|=+|+ . |-+|| +++++.+|.. ..+||++|+-+..
T Consensus 18 ~~~~~l~~--~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 18 EILKALVE--AGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK---NTIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc---CCCCEEEEEecCHHHHhC
Confidence 44445555 5689999996 3 44554 5566666654 3789999988654
Q ss_pred -hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 81 -MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 81 -~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
...+.++.++|++..+.-.+..+++...+..+
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 55677788999999999767777766555444
No 148
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=82.26 E-value=24 Score=37.67 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=67.5
Q ss_pred HHHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCC--HH---HHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 10 LLCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS--GV---ALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 10 ~~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~md--Gl---eLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
...|-..||.+. .+..|..-|.++.+. ... +++=+ -|=.+ |+ ..++.|++. +.+|||+=.+-...+
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~---Gc~-aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpVivdAGIgt~s 202 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDI---GCA-TVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHc---CCe-EEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEEeCCcCCHH
Confidence 345567899853 233444445444332 233 23334 34333 33 578888876 679999999999999
Q ss_pred HHHHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr~~ 116 (687)
.+.+||+.|++..|+ |--++.++...+..+.+--
T Consensus 203 Da~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 203 EASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred HHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHH
Confidence 999999999999875 5567888888888776543
No 149
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=81.97 E-value=0.36 Score=57.24 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=32.1
Q ss_pred CChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 197 CPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 197 TGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
-.||++|++||.||+|...|||.++ |.. .++||||-
T Consensus 164 ~~~~~~~nllv~ns~~~~aPvi~~~----~p~------~~~LfG~i 199 (637)
T PRK13765 164 KEDAMVPKLLVNNADKKTAPFVDAT----GAH------AGALLGDV 199 (637)
T ss_pred cCceEEEEEEEeCCCCCCCCEEEeC----CCC------HHHcCCcc
Confidence 3699999999999999999999999 888 66899954
No 150
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=81.94 E-value=0.96 Score=51.44 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=28.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+..||+ .|++||||.++|++|+... ..+|+.|.
T Consensus 215 ~~p~gVLL-~GPPGTGKT~LAraIA~el---~~~fi~V~ 249 (438)
T PTZ00361 215 KPPKGVIL-YGPPGTGKTLLAKAVANET---SATFLRVV 249 (438)
T ss_pred CCCcEEEE-ECCCCCCHHHHHHHHHHhh---CCCEEEEe
Confidence 34455888 7999999999999999754 45788887
No 151
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=81.72 E-value=11 Score=41.30 Aligned_cols=98 Identities=8% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 11 LCFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 11 ~lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
..|-..||.+ +.++.|...|.++..- .+ +.++=+ -| +..-.+.++.+.+. +.+|||+=.+-+..+.
T Consensus 191 ~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sd 263 (326)
T PRK11840 191 EILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASD 263 (326)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHH
Confidence 3344569998 7888999988877654 34 333322 11 23345778888876 6799999999999999
Q ss_pred HHHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr~ 115 (687)
+.+||++|++..|+ |--++-.+-.+++.+.+-
T Consensus 264 a~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 264 AAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 99999999999886 445666666666666543
No 152
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=81.09 E-value=21 Score=38.53 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=68.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc---CC----------------------------------CCCHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTEV---MP----------------------------------CLSGVALLS 59 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl---MP----------------------------------~mdGleLL~ 59 (687)
+.-.+.-+.+..||++.+.. .+|+|=+=. -+ ..-++++++
T Consensus 114 ~vpfmad~~~l~EAlrai~~---GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLk 190 (287)
T TIGR00343 114 KVPFVCGARDLGEALRRINE---GAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLL 190 (287)
T ss_pred CCCEEccCCCHHHHHHHHHC---CCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHH
Confidence 44446678888888888765 577776541 01 124889999
Q ss_pred HHHhhcCCCCceEE--EEecCCChHHHHHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHHHH
Q 005631 60 KIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 60 ~Ir~~~~~p~iPVI--vmTa~~d~~~av~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr~~ 116 (687)
++++. ..+||| ...+-.+++.+..++++||+.+++ |.-++.+....+..++.++
T Consensus 191 ei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 191 EVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred HHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 99876 469998 666677999999999999999875 4446777766676666553
No 153
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.91 E-value=14 Score=37.29 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCCC--CHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 7 MLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~m--dGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.++..+|+..||+++.. --..++.++.+.+ ..||+|.+-. |... .-.++++.|++....+.++|++=-..-+.
T Consensus 100 ~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~ 177 (201)
T cd02070 100 NLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ 177 (201)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH
Confidence 56778899999996543 2357788888888 8999999988 7643 23467788887742236666654443333
Q ss_pred HHHHHHHhCCCCEEEe
Q 005631 82 GLVFKCLSKGAVDFLV 97 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~ 97 (687)
+ -+-..||+.|-.
T Consensus 178 ~---~~~~~GaD~~~~ 190 (201)
T cd02070 178 E---FADEIGADGYAE 190 (201)
T ss_pred H---HHHHcCCcEEEC
Confidence 2 455669888765
No 154
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=80.87 E-value=18 Score=38.12 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=60.4
Q ss_pred HHHHHHhCCCeEEEE-eCCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-----HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 9 LLLCFEIAVMKVITE-ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 9 l~~lLe~~G~~~V~~-A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-----leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
....|-..||.+.-. ..|..-|.++ .+ -.... ++=+ -|=.+| ...++.|++. .++|||+=.+-+.+
T Consensus 115 Aae~Lv~eGF~VlPY~~~D~v~akrL-~d--~Gcaa-vMPlgsPIGSg~Gi~n~~~l~~i~~~---~~vPvIvDAGiG~p 187 (247)
T PF05690_consen 115 AAEILVKEGFVVLPYCTDDPVLAKRL-ED--AGCAA-VMPLGSPIGSGRGIQNPYNLRIIIER---ADVPVIVDAGIGTP 187 (247)
T ss_dssp HHHHHHHTT-EEEEEE-S-HHHHHHH-HH--TT-SE-BEEBSSSTTT---SSTHHHHHHHHHH---GSSSBEEES---SH
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHH-HH--CCCCE-EEecccccccCcCCCCHHHHHHHHHh---cCCcEEEeCCCCCH
Confidence 345566889996433 4444445444 44 33443 3334 454443 3678888877 48999999999999
Q ss_pred HHHHHHHhCCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVK-----PIRKNELKNLWQHVWR 114 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~K-----P~~~eeL~~~L~~alr 114 (687)
..+.+||+.|++..|+- --++-.+....+.+.+
T Consensus 188 Sdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 188 SDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 99999999999999985 3456666666665544
No 155
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=80.59 E-value=1.3 Score=48.60 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=27.2
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+..||+ .|++||||.++|++|+.... .+|+.+.
T Consensus 156 p~gvLL-~GppGtGKT~lakaia~~l~---~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLL-YGPPGTGKTLLAKAVAHETN---ATFIRVV 188 (364)
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHhCC---CCEEecc
Confidence 445888 79999999999999987654 4788887
No 156
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.56 E-value=0.59 Score=43.55 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=31.7
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
+|++ .|++||||..+|+.|-..= +.+++.++ |.+. ..+..|+|...
T Consensus 1 ~vlL-~G~~G~GKt~l~~~la~~~---~~~~~~i~----~~~~---~~~~dl~g~~~ 46 (139)
T PF07728_consen 1 PVLL-VGPPGTGKTTLARELAALL---GRPVIRIN----CSSD---TTEEDLIGSYD 46 (139)
T ss_dssp EEEE-EESSSSSHHHHHHHHHHHH---TCEEEEEE-----TTT---STHHHHHCEEE
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHh---hcceEEEE----eccc---cccccceeeee
Confidence 4677 7999999999999885443 67888887 5553 33446655444
No 157
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=80.26 E-value=17 Score=39.29 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=70.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEc------------------------c--CC----------CCCHHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTE------------------------V--MP----------CLSGVALLSK 60 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlD------------------------l--MP----------~mdGleLL~~ 60 (687)
..-.+.-+.+..||++.+.. .+|+|=+= + +. ..-+++++++
T Consensus 121 ~~~fmad~~~l~EAlrai~~---GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~e 197 (293)
T PRK04180 121 TVPFVCGARNLGEALRRIAE---GAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKE 197 (293)
T ss_pred CCCEEccCCCHHHHHHHHHC---CCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHH
Confidence 44446678899999988875 68888776 3 31 2247899999
Q ss_pred HHhhcCCCCceEE--EEecCCChHHHHHHHhCCCCEEEeC-----CCCHHHHHHHHHHHHHHH
Q 005631 61 IMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLVK-----PIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 61 Ir~~~~~p~iPVI--vmTa~~d~~~av~Am~aGA~DYL~K-----P~~~eeL~~~L~~alr~~ 116 (687)
+++. ..+||| ...+-.+++.+..+++.||+.+++= .-++.+....+..++..+
T Consensus 198 i~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 198 VAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred HHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 9886 469998 6666779999999999999998754 347777777777776654
No 158
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.24 E-value=1.4 Score=38.84 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=27.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++ .|++||||.++|+.|-..-......++.++
T Consensus 5 ~~l-~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 5 ILI-VGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred EEE-ECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 556 799999999999999877776655677777
No 159
>PLN02591 tryptophan synthase
Probab=80.24 E-value=14 Score=39.01 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=55.6
Q ss_pred HHHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCCC------
Q 005631 30 AWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS------ 80 (687)
Q Consensus 30 ALe~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~d------ 80 (687)
.++.+.+ ...|+|=+.+ . |-.|| +++++++|.. ..+|+|+||-+..
T Consensus 21 ~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~ 95 (250)
T PLN02591 21 ALRLLDA--CGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ---LSCPIVLFTYYNPILKRGI 95 (250)
T ss_pred HHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC---CCCCEEEEecccHHHHhHH
Confidence 3334444 5688776666 3 33454 6666666633 6789999998664
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
...+.+|.++|++..|+-.+.++|....+..+.
T Consensus 96 ~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 334778889999999999999988887766553
No 160
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=1.2 Score=47.51 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.6
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++-+..||+ .|+.||||.|||||+- .|.+.-||-|-
T Consensus 208 idppkgvll-ygppgtgktl~arava---nrtdacfirvi 243 (435)
T KOG0729|consen 208 IDPPKGVLL-YGPPGTGKTLCARAVA---NRTDACFIRVI 243 (435)
T ss_pred CCCCCceEE-eCCCCCchhHHHHHHh---cccCceEEeeh
Confidence 366667999 8999999999999984 67778899886
No 161
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=79.59 E-value=13 Score=44.92 Aligned_cols=103 Identities=15% Similarity=0.047 Sum_probs=71.0
Q ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 9 LLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
+...|+..||+ |..+.+..+++..++. ...++.|++|+ -. ..+++..|+.. ...+||+++........+-..
T Consensus 22 l~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~Pv~~~~~~~~~~~~~~~ 94 (713)
T PRK15399 22 LESALQAQGFQ-TIWPQNSVDLLKFIEH-NPRICGVIFDWDEY---SLDLCSDINQL--NEYLPLYAFINTHSTMDVSVQ 94 (713)
T ss_pred HHHHHHHCCcE-EEEecCHHHHHHHHhc-ccceeEEEEecccc---hHHHHHHHHHh--CCCCCEEEEcCccccccCChh
Confidence 34456779999 7799999999999885 46789999997 43 25689999987 489999999776544433333
Q ss_pred HhCCCCEEEeCCCC-HHHHHHHHHHHHHHHhc
Q 005631 88 LSKGAVDFLVKPIR-KNELKNLWQHVWRRCHS 118 (687)
Q Consensus 88 m~aGA~DYL~KP~~-~eeL~~~L~~alr~~~~ 118 (687)
.-.-+..|+..--+ .+.+...|..+.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 95 DMRMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred HhhhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 33445666665543 44555556666665544
No 162
>PRK13342 recombination factor protein RarA; Reviewed
Probab=78.96 E-value=1.1 Score=50.13 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=28.3
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+......+++ +|++||||.++|++|..... .+|+.++
T Consensus 32 ~~~~~~~ilL-~GppGtGKTtLA~~ia~~~~---~~~~~l~ 68 (413)
T PRK13342 32 EAGRLSSMIL-WGPPGTGKTTLARIIAGATD---APFEALS 68 (413)
T ss_pred HcCCCceEEE-ECCCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence 3344445777 89999999999999987654 4788887
No 163
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=78.64 E-value=16 Score=36.53 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=59.0
Q ss_pred hCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE
Q 005631 15 IAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 94 (687)
Q Consensus 15 ~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D 94 (687)
..+...+.-+.+.+|+++.++ ..+|+|-++-.+.. |.++++.++.. .+.+|++.+-+- +.+.+.+.++.|++.
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~---~Gad~i~~~p~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~G~~~ 167 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALE---LGADIVKLFPAEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAAGVVA 167 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHH---CCCCEEEEcCCccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHCCCEE
Confidence 345555556779999988875 47999998653333 99999999865 567888877666 889999999999777
Q ss_pred EEeCC
Q 005631 95 FLVKP 99 (687)
Q Consensus 95 YL~KP 99 (687)
.-+--
T Consensus 168 v~v~s 172 (190)
T cd00452 168 VGGGS 172 (190)
T ss_pred EEEch
Confidence 65543
No 164
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=78.05 E-value=1.7 Score=48.89 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+..||+ .|++||||.++|++|.... ..+|+.+.
T Consensus 177 ~~pkgvLL-~GppGTGKT~LAkalA~~l---~~~fi~i~ 211 (398)
T PTZ00454 177 DPPRGVLL-YGPPGTGKTMLAKAVAHHT---TATFIRVV 211 (398)
T ss_pred CCCceEEE-ECCCCCCHHHHHHHHHHhc---CCCEEEEe
Confidence 45566888 7999999999999998764 35899887
No 165
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=77.72 E-value=15 Score=44.50 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=69.2
Q ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 9 LLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
+...|+..||+ |..+.+..+++..++. ...++.|++|+ -- ..+++..|+.. ...+||+++........+-..
T Consensus 22 l~~~l~~~~~~-v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~Pv~~~~~~~~~~~~~~~ 94 (714)
T PRK15400 22 LHRALERLNFQ-IVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKM--NENLPLYAFANTYSTLDVSLN 94 (714)
T ss_pred HHHHHHHCCcE-EEEeCCHHHHHHHHhc-ccceeEEEEecchh---hHHHHHHHHHh--CCCCCEEEEccccccccCChH
Confidence 44467789999 6789999999999885 46789999997 31 25589999887 489999999775543333233
Q ss_pred HhCCCCEEEeCCC-CHHHHHHHHHHHHHHHhc
Q 005631 88 LSKGAVDFLVKPI-RKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 88 m~aGA~DYL~KP~-~~eeL~~~L~~alr~~~~ 118 (687)
.-.-+..|+..-- +.+.+...|..+.++...
T Consensus 95 ~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (714)
T PRK15400 95 DLRLQVSFFEYALGAADDIANKIKQTTDEYID 126 (714)
T ss_pred HhhhccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 3333555665443 345555556666655543
No 166
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=77.57 E-value=41 Score=36.35 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=71.1
Q ss_pred HHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc---CC---------------------------------C
Q 005631 8 LLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV---MP---------------------------------C 51 (687)
Q Consensus 8 ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl---MP---------------------------------~ 51 (687)
++..+-+..+.-.+.-+.+.+||+..++. .+|+|=+=+ -+ .
T Consensus 103 ~~~~iK~~~~~l~MAD~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 103 EHHIDKHKFKVPFVCGARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHcCCcEEccCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 33333333344456678899999998875 688776543 11 1
Q ss_pred CCHHHHHHHHHhhcCCCCceEE--EEecCCChHHHHHHHhCCCCEEEeCC-----CCHHHHHHHHHHHHHHH
Q 005631 52 LSGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLVKP-----IRKNELKNLWQHVWRRC 116 (687)
Q Consensus 52 mdGleLL~~Ir~~~~~p~iPVI--vmTa~~d~~~av~Am~aGA~DYL~KP-----~~~eeL~~~L~~alr~~ 116 (687)
.-++++|+++++. ..+||| ...+-.+++.+.++++.||+.+++=- -++.+....+..++.++
T Consensus 180 ~~d~elLk~l~~~---~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 180 QAPYELVKETAKL---GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCCHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 2478999999876 368997 66667799999999999999987643 35666666666665543
No 167
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=77.09 E-value=1.3 Score=53.52 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.0
Q ss_pred hhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 178 KAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 178 ~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
...+.....++++ +|++||||.++|++||... ..+|+.+|
T Consensus 45 ~~i~~~~~~slLL-~GPpGtGKTTLA~aIA~~~---~~~f~~ln 84 (725)
T PRK13341 45 RAIKADRVGSLIL-YGPPGVGKTTLARIIANHT---RAHFSSLN 84 (725)
T ss_pred HHHhcCCCceEEE-ECCCCCCHHHHHHHHHHHh---cCcceeeh
Confidence 3344444445766 8999999999999999654 35788888
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=76.73 E-value=1.7 Score=53.45 Aligned_cols=51 Identities=4% Similarity=-0.113 Sum_probs=39.1
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
.++++.|++|+||..+|++|...--.....|+.+| |....+..-.+.|+|.
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d----mse~~~~~~~~~l~g~ 647 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAELLYGGEQNLITIN----MSEFQEAHTVSRLKGS 647 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe----HHHhhhhhhhccccCC
Confidence 35666899999999999988765444456899999 8888777666677554
No 169
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=76.29 E-value=1.6 Score=42.77 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=24.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++++|.+|+||+++|+.+....+ .+|+.++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~ 34 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA---EPWLHFG 34 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---CCccccC
Confidence 455589999999999999987754 4677554
No 170
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.21 E-value=24 Score=37.40 Aligned_cols=85 Identities=14% Similarity=0.299 Sum_probs=58.0
Q ss_pred eCCHHHHHHH---HHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEec
Q 005631 24 ATNGLQAWKI---LEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSS 77 (687)
Q Consensus 24 A~sg~eALe~---L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa 77 (687)
..+.+..++. +.+ ...|+|=+.+ . |-.|| ++++++||+. .+++|+|+||-
T Consensus 22 ~P~~~~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~--~~~~p~vlm~Y 97 (258)
T PRK13111 22 DPDLETSLEIIKALVE--AGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK--DPTIPIVLMTY 97 (258)
T ss_pred CCCHHHHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEEEec
Confidence 3455555554 444 5688776666 3 33444 5666666633 47899999996
Q ss_pred CC------ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 78 LD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 78 ~~------d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
+. -...+.+|.++|++..|+-.+.++|....+..+
T Consensus 98 ~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 98 YNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred ccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 54 344588889999999999778888887666554
No 171
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=75.68 E-value=35 Score=34.76 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=57.1
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 14 e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
+..+..++..+.+.+++.+.. + ...|.|+++- -++ ...+++++++++. ..+|||+.-+-...+.+.
T Consensus 99 ~~~~i~~i~~v~~~~~~~~~~-~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~---~~~Pvi~~GGI~~~~~v~ 172 (236)
T cd04730 99 KAAGIKVIPTVTSVEEARKAE-A--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA---VDIPVIAAGGIADGRGIA 172 (236)
T ss_pred HHcCCEEEEeCCCHHHHHHHH-H--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH---hCCCEEEECCCCCHHHHH
Confidence 344666566666777765544 3 4589888864 222 2457788888865 368999988888889999
Q ss_pred HHHhCCCCEEEeC
Q 005631 86 KCLSKGAVDFLVK 98 (687)
Q Consensus 86 ~Am~aGA~DYL~K 98 (687)
+++..||+..++-
T Consensus 173 ~~l~~GadgV~vg 185 (236)
T cd04730 173 AALALGADGVQMG 185 (236)
T ss_pred HHHHcCCcEEEEc
Confidence 9999999988775
No 172
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=75.37 E-value=36 Score=36.43 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC-CHHH
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNE 104 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~-~~ee 104 (687)
.-.+.+++.. ..||.|++|+ -...+--++...|+.... ..++.|+-....+...+.+++..||...|+-=+ +.++
T Consensus 28 sp~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saee 104 (267)
T PRK10128 28 TSYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQ 104 (267)
T ss_pred CcHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHH
Confidence 3466677776 6799999999 666666666666665542 344445455566789999999999999998666 4677
Q ss_pred HHHHHHH
Q 005631 105 LKNLWQH 111 (687)
Q Consensus 105 L~~~L~~ 111 (687)
.+.+++.
T Consensus 105 A~~~V~a 111 (267)
T PRK10128 105 ARQVVSA 111 (267)
T ss_pred HHHHHHh
Confidence 6666653
No 173
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=75.36 E-value=35 Score=34.86 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc---CC----CCCHHHHHHHHHhhcCCCCceEEEEecC
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV---MP----CLSGVALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl---MP----~mdGleLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
..++..+-+.. ..+..-+++.+|++...+. .+|+|=+=+ -| ....++|+++|.+. .+|||.=-..
T Consensus 82 ~~li~~i~~~~-~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri 153 (192)
T PF04131_consen 82 EELIREIKEKY-QLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRI 153 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS-
T ss_pred HHHHHHHHHhC-cEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCC
Confidence 44455554433 5556678999999998774 699887655 22 33568999999864 6888887788
Q ss_pred CChHHHHHHHhCCCCEEEeCC
Q 005631 79 DSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 79 ~d~~~av~Am~aGA~DYL~KP 99 (687)
.+++.+.+||++||+..++=-
T Consensus 154 ~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 154 HTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp -SHHHHHHHHHTT-SEEEE-H
T ss_pred CCHHHHHHHHhcCCeEEEECc
Confidence 899999999999999998754
No 174
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=75.17 E-value=48 Score=33.57 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=57.8
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--C-CCCCHHHHHHHHHhhcCC-CCceEEEEecCCChHHHHHHHh
Q 005631 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTR-KNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 14 e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--M-P~mdGleLL~~Ir~~~~~-p~iPVIvmTa~~d~~~av~Am~ 89 (687)
...|...+..+.+.+++.+.++ ..+|.|.+-- . ....+++++.+|++. . ..+|||...+-.+.+.+.+++.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~---~g~~~i~~t~~~~~~~~~~~~~~~~l~~~--~~~~~pvia~gGI~s~edi~~~~~ 192 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA---LGAKIIGINNRDLKTFEVDLNTTERLAPL--IPKDVILVSESGISTPEDVKRLAE 192 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH---cCCCEEEEeCCCccccCcCHHHHHHHHHh--CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 4468876667788888766654 4688776542 1 112345788888765 2 4689999999999999999999
Q ss_pred CCCCEEEe
Q 005631 90 KGAVDFLV 97 (687)
Q Consensus 90 aGA~DYL~ 97 (687)
.||+.+++
T Consensus 193 ~Ga~gviv 200 (217)
T cd00331 193 AGADAVLI 200 (217)
T ss_pred cCCCEEEE
Confidence 99999875
No 175
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=75.06 E-value=9 Score=42.11 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-CCCCC-HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-MP~md-GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
.+++.++++. +..+|+|.+|+ .+... -.+++++|++. +|++|||+= .-.+.+.+..++++||+-.+
T Consensus 99 ~~~~~~Lv~a-g~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 99 YDFVDQLAAE-GLTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHhc-CCCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 3555566553 11469999999 87644 45789999976 677877762 12378899999999998865
No 176
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=75.04 E-value=25 Score=34.15 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC--------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~--------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
+..+-..+.+..++.+.+. ..+|+|++.. .|. ..+++.++++++. ..+||+++.+- +.+.+.++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~ 167 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEV 167 (196)
T ss_pred CCEEEeeCCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHH
Confidence 4443344567777777655 3599999886 553 3567888888765 57899988776 46889999
Q ss_pred HhCCCCEEEeC
Q 005631 88 LSKGAVDFLVK 98 (687)
Q Consensus 88 m~aGA~DYL~K 98 (687)
+..|++.+..=
T Consensus 168 ~~~Ga~~i~~g 178 (196)
T cd00564 168 LAAGADGVAVI 178 (196)
T ss_pred HHcCCCEEEEe
Confidence 99999887654
No 177
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.94 E-value=28 Score=36.82 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=57.0
Q ss_pred CCHHHHH---HHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecC
Q 005631 25 TNGLQAW---KILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 25 ~sg~eAL---e~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
.+.+..+ +.+.+ ...|+|=+.+ . |-.|| +++++.||+. ...+|+++|+-+
T Consensus 21 P~~~~~~~~~~~l~~--~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~plv~m~Y~ 96 (256)
T TIGR00262 21 PTLETSLEIIKTLIE--AGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQK--HPNIPIGLLTYY 96 (256)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEEEEec
Confidence 3454444 44444 5689777766 3 33454 4556666643 257898888887
Q ss_pred CC------hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 79 DS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 79 ~d------~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
.. ...+.+|.++|++.+|.-....+++...+..+
T Consensus 97 Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 97 NLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred cHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 65 56788899999999999888888776655544
No 178
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=74.80 E-value=15 Score=38.08 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhhCCCc-cEEEEcc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHI-DLVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~p-DLVLlDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.+.. . + .|+++|+ .-+ +. .+++++.|.+. ..+|||+-.+-.+.+.+.+++..||+..++
T Consensus 147 ~~~~~~~~~~~--~-~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAK--W-PEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHH--h-CCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 36677777777 5 5 4999999 533 23 36788888765 589999999999999999999999998886
No 179
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.73 E-value=39 Score=34.42 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--C------CCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 8 LLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 8 ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--M------P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
+++.+.+.....++..+.+.+++..... ..+|+|.+.. + .....+++++.|++. -++|||...+-.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~---~~ipvia~GGI~ 187 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA---LGIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHh---cCCCEEEeCCCC
Confidence 3333333323665667788888866654 4688876531 2 123457899999876 379999998888
Q ss_pred ChHHHHHHHhCCCCEEEeC
Q 005631 80 SMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~K 98 (687)
+.+.+.+++..||+.++.=
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999988764
No 180
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=74.65 E-value=20 Score=36.28 Aligned_cols=86 Identities=9% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 7 MLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.++..+|+..||+++.. -...++.++.+.+ ..||+|.+-. |+. +.. .++++.|++....+.++|+ +-+..-.
T Consensus 102 ~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~-vGG~~~~ 178 (197)
T TIGR02370 102 NIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFM-VGGAPVT 178 (197)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEE-EEChhcC
Confidence 56778899999996433 3456788888988 8999999998 654 333 3577788776433445554 4443322
Q ss_pred HHHHHHHhCCCCEEEe
Q 005631 82 GLVFKCLSKGAVDFLV 97 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~ 97 (687)
. .-+.+.||+.|-.
T Consensus 179 ~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 179 Q--DWADKIGADVYGE 192 (197)
T ss_pred H--HHHHHhCCcEEeC
Confidence 2 2355779998864
No 181
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.27 E-value=59 Score=31.76 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCeEEE--EeCCHHHHHHHHHhhCCCccEEEEccCCC---CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVIT--EATNGLQAWKILEDLTNHIDLVLTEVMPC---LSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~--~A~sg~eALe~L~~~~~~pDLVLlDlMP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++. ...+.+|+.+..-+ ...|+|.+-.+-+ ...-++.+.+++.. ..++. ++.-+.-.
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~h~~l~~~lve~lre~G-~~~i~-v~~GGvip 104 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGGHLTLVPGLVEALREAG-VEDIL-VVVGGVIP 104 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccchHHHHHHHHHHHHHHhC-CcceE-EeecCccC
Confidence 35788899999999643 36788999988866 7899888755211 12234566666653 23333 35555556
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
++...+..+.|++.|+.--....+...-|...+.
T Consensus 105 ~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 105 PGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred chhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 6777777789999999877887777666655543
No 182
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=73.98 E-value=22 Score=37.52 Aligned_cols=92 Identities=15% Similarity=0.261 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHH--------HHH-HHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEE
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGL--------QAW-KILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 73 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~--------eAL-e~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVI 73 (687)
++..++.....+.+++ |..+.+|. +.. .++++ +.||+||+=- -|..-|-.-.+.+... .++|.|
T Consensus 18 ~idl~lDErAdRedI~-vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~I 91 (277)
T PRK00994 18 VIDLLLDERADREDID-VRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCI 91 (277)
T ss_pred HHHHHHHhhhcccCce-EEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEE
Confidence 3445555666677887 66776653 222 24456 8999999865 6677777666666654 588999
Q ss_pred EEecCCChHHHHHHHhCCCCEEEeCCCCH
Q 005631 74 MMSSLDSMGLVFKCLSKGAVDFLVKPIRK 102 (687)
Q Consensus 74 vmTa~~d~~~av~Am~aGA~DYL~KP~~~ 102 (687)
+|+...... ..++|+..-+.||.-+.++
T Consensus 92 vI~D~p~~K-~~d~l~~~g~GYIivk~Dp 119 (277)
T PRK00994 92 VIGDAPGKK-VKDAMEEQGLGYIIVKADP 119 (277)
T ss_pred EEcCCCccc-hHHHHHhcCCcEEEEecCc
Confidence 999866655 3488998888998877654
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.84 E-value=1.8 Score=39.05 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=27.7
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
||+ .|+.||||.++|+.|=... +-+|+.++ |..+.
T Consensus 1 ill-~G~~G~GKT~l~~~la~~l---~~~~~~i~----~~~~~ 35 (132)
T PF00004_consen 1 ILL-HGPPGTGKTTLARALAQYL---GFPFIEID----GSELI 35 (132)
T ss_dssp EEE-ESSTTSSHHHHHHHHHHHT---TSEEEEEE----TTHHH
T ss_pred CEE-ECcCCCCeeHHHHHHHhhc---cccccccc----ccccc
Confidence 456 7999999999999885554 45899999 77765
No 184
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.71 E-value=39 Score=34.46 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-CCC-CCH--HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-MP~-mdG--leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.+.+ ..++ ++++|+ --+ +.| +++++++++. ..+|||+=.+-.+.+.+.+++..||+.+++
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 45566666766 6677 777887 432 223 6888888876 579999988899999999999999999876
No 185
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=73.63 E-value=24 Score=34.95 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=53.5
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC--------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 19 ~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~--------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
.+-..+.+.+++.+.++ ..+|+|+++- .|. ..|+++++++.+. .+.+||+++-+- +.+.+.+++.
T Consensus 98 ~ig~s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~--~~~~pv~a~GGI-~~~~~~~~~~ 171 (196)
T TIGR00693 98 IIGVSTHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT--SIDIPIVAIGGI-TLENAAEVLA 171 (196)
T ss_pred EEEEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHHHHH
Confidence 33456777788766443 5799999877 652 2389999999865 356898888665 5788889999
Q ss_pred CCCCEEEe
Q 005631 90 KGAVDFLV 97 (687)
Q Consensus 90 aGA~DYL~ 97 (687)
.|++.+.+
T Consensus 172 ~G~~gva~ 179 (196)
T TIGR00693 172 AGADGVAV 179 (196)
T ss_pred cCCCEEEE
Confidence 99987654
No 186
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.58 E-value=42 Score=35.44 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=60.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC-CHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKN 103 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~-~~e 103 (687)
..-.+.|++.. ..+|.|++|+ -..++--++...|+.... ..++.|+=....+...+.+++..||...++-=+ +.+
T Consensus 21 ~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~-~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~tae 97 (249)
T TIGR03239 21 GNPITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKG-SASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAE 97 (249)
T ss_pred CCcHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHH
Confidence 33466677776 6799999999 777776677777766542 345555555667889999999999999987555 567
Q ss_pred HHHHHHHH
Q 005631 104 ELKNLWQH 111 (687)
Q Consensus 104 eL~~~L~~ 111 (687)
+.+.+++.
T Consensus 98 ea~~~v~a 105 (249)
T TIGR03239 98 EAERAVAA 105 (249)
T ss_pred HHHHHHHH
Confidence 77666653
No 187
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=72.50 E-value=50 Score=29.56 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=57.2
Q ss_pred HHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCC--ChHHH
Q 005631 8 LLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLD--SMGLV 84 (687)
Q Consensus 8 ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~--d~~~a 84 (687)
.+..++.. .++.++..+....+..+.+.+. ..+. ++.|+ +.+.+. +.+-+|+++... -.+.+
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~~----------~~ll~~---~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTDL----------EELLAD---EDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESSH----------HHHHHH---TTESEEEEESSGGGHHHHH
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhHH----------HHHHHh---hcCCEEEEecCCcchHHHH
Confidence 34445555 6777666666666655554331 4444 44432 233332 244455554433 46789
Q ss_pred HHHHhCCCCEEEeCCC--CHHHHHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVKPI--RKNELKNLWQHVWR 114 (687)
Q Consensus 85 v~Am~aGA~DYL~KP~--~~eeL~~~L~~alr 114 (687)
.+|++.|..=|+.||+ +.+++...++.+-+
T Consensus 80 ~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 80 KKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 9999999999999997 78888877765543
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=72.23 E-value=2.4 Score=48.69 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=30.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ai 229 (687)
..+..+|+ .|++||||.++|++|= ...+-||+.++ |..+
T Consensus 86 ~~~~giLL-~GppGtGKT~la~alA---~~~~~~~~~i~----~~~~ 124 (495)
T TIGR01241 86 KIPKGVLL-VGPPGTGKTLLAKAVA---GEAGVPFFSIS----GSDF 124 (495)
T ss_pred CCCCcEEE-ECCCCCCHHHHHHHHH---HHcCCCeeecc----HHHH
Confidence 34455888 8999999999999993 33567999998 6554
No 189
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=72.08 E-value=20 Score=36.55 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-CCC-CCH--HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCC-CCEEEe
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-MP~-mdG--leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aG-A~DYL~ 97 (687)
+..+..+.+.. ..++ ++++|+ .-+ ..| +++++++++. ..+|||.-.+-.+.+.+.++++.| |+.+++
T Consensus 147 ~~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 147 TAEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CHHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 34666677766 5677 788877 432 344 7889999876 359999998899999999999988 888875
No 190
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=72.05 E-value=29 Score=36.79 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC-CHHH
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNE 104 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~-~~ee 104 (687)
.-.+.|.+.. ..+|.|++|+ -..+|--++...|+.... ..++.|+=....+...+.++++.||..++.-=+ +.++
T Consensus 29 sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~ 105 (256)
T PRK10558 29 NPITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKG-SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEE 105 (256)
T ss_pred CcHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHH
Confidence 3466677776 6799999999 766776677777766543 344555555666889999999999999987555 5677
Q ss_pred HHHHHHH
Q 005631 105 LKNLWQH 111 (687)
Q Consensus 105 L~~~L~~ 111 (687)
.+.+++.
T Consensus 106 a~~~v~a 112 (256)
T PRK10558 106 ARRAVAS 112 (256)
T ss_pred HHHHHHH
Confidence 7666653
No 191
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=72.04 E-value=29 Score=37.93 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC------CC-CHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP------CL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP------~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..++..|..++..+.+.++|...++. .+|.|++-= -- .. +-+.|+.+++.. -++|||.--+-.+..
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~dg~ 203 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIADGR 203 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCCHH
Confidence 45677899989999999999987764 699888753 21 12 257788888877 469999988889999
Q ss_pred HHHHHHhCCCCEEEe
Q 005631 83 LVFKCLSKGAVDFLV 97 (687)
Q Consensus 83 ~av~Am~aGA~DYL~ 97 (687)
.+..++.+||+....
T Consensus 204 ~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 204 GIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHHCT-SEEEE
T ss_pred HHHHHHHcCCCEeec
Confidence 999999999999875
No 192
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=72.02 E-value=34 Score=31.57 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCCeEEEE-eCCHHHHHHHHHhhCCCccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 7 MLLLLCFEIAVMKVITE-ATNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~-A~sg~eALe~L~~~~~~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
..+...|+..|+.+... ....++.++.+.. ...||+|.+-+ .+.. ..+++++.||+. +|+++||+--.+.+. .
T Consensus 6 ~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~pdiv~~S~~~~~~~~~~~~~~~ik~~--~p~~~iv~GG~~~t~-~ 81 (127)
T cd02068 6 AYLAAVLEDAGFIVAEHDVLSADDIVEDIKE-LLKPDVVGISLMTSAIYEALELAKIAKEV--LPNVIVVVGGPHATF-F 81 (127)
T ss_pred HHHHHHHHHCCCeeeecCCCCHHHHHHHHHH-hcCCCEEEEeeccccHHHHHHHHHHHHHH--CCCCEEEECCcchhh-C
Confidence 45666777778773211 2344556666643 15899999988 4443 467799999987 578877765444432 2
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
....+..-..||++.---..-|...++
T Consensus 82 p~~~~~~~~~D~vv~GEgE~~~~~l~~ 108 (127)
T cd02068 82 PEEILEEPGVDFVVIGEGEETFLKLLE 108 (127)
T ss_pred HHHHhcCCCCCEEEECCcHHHHHHHHH
Confidence 222245556789987643333444443
No 193
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=71.06 E-value=2 Score=45.76 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=25.0
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+|+ +|++|+||..+|++|+..- ..+|+.+|
T Consensus 44 ~~lll-~G~~G~GKT~la~~l~~~~---~~~~~~i~ 75 (316)
T PHA02544 44 NMLLH-SPSPGTGKTTVAKALCNEV---GAEVLFVN 75 (316)
T ss_pred eEEEe-eCcCCCCHHHHHHHHHHHh---CccceEec
Confidence 33555 8999999999999997643 45788888
No 194
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.88 E-value=3.1 Score=46.21 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+-|.-||+ +|+.||||-|+|+|+-.. .+-.||-|.
T Consensus 183 ~PPKGVLL-YGPPGTGKTLLAkAVA~~---T~AtFIrvv 217 (406)
T COG1222 183 DPPKGVLL-YGPPGTGKTLLAKAVANQ---TDATFIRVV 217 (406)
T ss_pred CCCCceEe-eCCCCCcHHHHHHHHHhc---cCceEEEec
Confidence 56666999 899999999999999543 344799987
No 195
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=70.62 E-value=38 Score=32.27 Aligned_cols=85 Identities=20% Similarity=0.087 Sum_probs=52.2
Q ss_pred HHHHHHHhC-CCeEEEEeCCHHHHHHH-HHhhCCCccEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCceEEEEec
Q 005631 8 LLLLCFEIA-VMKVITEATNGLQAWKI-LEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVIMMSS 77 (687)
Q Consensus 8 ll~~lLe~~-G~~~V~~A~sg~eALe~-L~~~~~~pDLVLlDl-MP~mdG-------leLL~~Ir~~~~~p~iPVIvmTa 77 (687)
++..+.+.. ++.++.......+..+. +.. ...|.|.++. .+...+ ...+..++.. ..+|||+..+
T Consensus 104 ~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pi~~~GG 178 (200)
T cd04722 104 LIRELREAVPDVKVVVKLSPTGELAAAAAEE--AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG---SKVPVIAGGG 178 (200)
T ss_pred HHHHHHHhcCCceEEEEECCCCccchhhHHH--cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc---CCCCEEEECC
Confidence 344444432 45543344333332222 444 5689999888 765432 2344444433 6799999888
Q ss_pred CCChHHHHHHHhCCCCEEEe
Q 005631 78 LDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 78 ~~d~~~av~Am~aGA~DYL~ 97 (687)
-.+.+.+.++++.||+.+.+
T Consensus 179 i~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 179 INDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCHHHHHHHHHhCCCEEEe
Confidence 88889999999999887754
No 196
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=70.13 E-value=46 Score=34.08 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEE-EEecCCChHHHHHH
Q 005631 10 LLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI-MMSSLDSMGLVFKC 87 (687)
Q Consensus 10 ~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVI-vmTa~~d~~~av~A 87 (687)
...|+..+.-.|....+.+++++.++.. ..-.+=++.+ |-.-++++.++.|++. ++. +++ =.-.--+.+.+..|
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~--~~~-~~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKA--LGD-RALIGAGTVLSPEQVDRL 79 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHH--cCC-CcEEeEEecCCHHHHHHH
Confidence 3455666766677888999998887642 1223446777 7777899999999876 343 332 22223457899999
Q ss_pred HhCCCCEEEeCCCCHHHHHHH
Q 005631 88 LSKGAVDFLVKPIRKNELKNL 108 (687)
Q Consensus 88 m~aGA~DYL~KP~~~eeL~~~ 108 (687)
+.+|| +||.-|....++...
T Consensus 80 ~~aGA-~fivsp~~~~~v~~~ 99 (206)
T PRK09140 80 ADAGG-RLIVTPNTDPEVIRR 99 (206)
T ss_pred HHcCC-CEEECCCCCHHHHHH
Confidence 99999 677778555555443
No 197
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=69.74 E-value=2.2 Score=44.49 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=41.9
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhh-ccCCccc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFA-KRSRDLD 244 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESe-lFGh~l~ 244 (687)
.||| +|++||||.+||--.=.+.-+.+.|.+-|. -..-|++|.+.. -||.|++
T Consensus 25 ~~lI-~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs----~~e~~~~l~~~~~~~g~d~~ 78 (260)
T COG0467 25 VVLI-TGPPGTGKTIFALQFLYEGAREGEPVLYVS----TEESPEELLENARSFGWDLE 78 (260)
T ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHhcCCcEEEEE----ecCCHHHHHHHHHHcCCCHH
Confidence 4777 899999999988766667777788888888 677788887653 3788886
No 198
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=69.61 E-value=2.9 Score=50.48 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=31.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..+..||+ .|++||||.++|++|.... ..+|+.|+ |..+.
T Consensus 210 ~~~~giLL-~GppGtGKT~laraia~~~---~~~~i~i~----~~~i~ 249 (733)
T TIGR01243 210 EPPKGVLL-YGPPGTGKTLLAKAVANEA---GAYFISIN----GPEIM 249 (733)
T ss_pred CCCceEEE-ECCCCCChHHHHHHHHHHh---CCeEEEEe----cHHHh
Confidence 44556888 8999999999999997543 46899999 76554
No 199
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=69.45 E-value=32 Score=36.64 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=57.0
Q ss_pred CCHHHHHH---HHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecC
Q 005631 25 TNGLQAWK---ILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 25 ~sg~eALe---~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
.+.+.-++ .+.+ ...|+|=+.+ . |-.|| ++++++||.. ..+|+|+||-+
T Consensus 26 P~~~~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~---~~~p~vlm~Y~ 100 (263)
T CHL00200 26 PDIVITKKALKILDK--KGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE---IKAPIVIFTYY 100 (263)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC---CCCCEEEEecc
Confidence 35544444 4444 5688776666 3 33444 6666677643 68999999986
Q ss_pred CC------hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 79 DS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 79 ~d------~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
.. ...+.+|.++|++.+|+-.+..+|....+..+
T Consensus 101 N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 101 NPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred cHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 53 44688899999999999988888876555543
No 200
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=69.26 E-value=26 Score=36.17 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecC-----
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSL----- 78 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~----- 78 (687)
-..+|+-|.. ...|+|=+.+ . |-.|| ++++++.|.. .-.+|||+|+-|
T Consensus 34 T~kilkglq~--gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~--gvt~PIiLmgYYNPIl~ 109 (268)
T KOG4175|consen 34 TAKILKGLQS--GGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ--GVTCPIILMGYYNPILR 109 (268)
T ss_pred HHHHHHHHhc--CCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc--CcccceeeeecccHHHh
Confidence 3445666666 6688877666 3 22344 3344444432 357999999875
Q ss_pred -CChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 79 -DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 79 -~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+....+..+.++||..||+-.+.++|-.. ++.-.+
T Consensus 110 yG~e~~iq~ak~aGanGfiivDlPpEEa~~-~Rne~~ 145 (268)
T KOG4175|consen 110 YGVENYIQVAKNAGANGFIIVDLPPEEAET-LRNEAR 145 (268)
T ss_pred hhHHHHHHHHHhcCCCceEeccCChHHHHH-HHHHHH
Confidence 46778899999999999999988888653 333333
No 201
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=68.60 E-value=31 Score=35.53 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++..- -..++.++.+.+ ..||+|.+-. |+. +.. .++++.|++. .++++|++=-+--+
T Consensus 105 ~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~~--~~~~~i~vGG~~~~ 180 (213)
T cd02069 105 KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNRR--GIKIPLLIGGAATS 180 (213)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHhc--CCCCeEEEEChhcC
Confidence 3567888999999965543 346788888888 8999999998 764 333 4578888776 35777665544444
Q ss_pred hHHHHH---HHhCCCCEEEe
Q 005631 81 MGLVFK---CLSKGAVDFLV 97 (687)
Q Consensus 81 ~~~av~---Am~aGA~DYL~ 97 (687)
.+.+.. +-..||+.|-.
T Consensus 181 ~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 181 RKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred HHHHhhhhccccCCCceEec
Confidence 444332 23468877655
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=68.28 E-value=2.2 Score=38.43 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=16.1
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|+| .|.+|+||+++|+.+=
T Consensus 2 I~I-~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 2 III-SGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEE-EESTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 345 8999999999999983
No 203
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=68.15 E-value=3 Score=45.71 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=39.0
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
....+|++ .|.+||||.++|+.|... -+.||+.|+ |... +..+.|+|++.
T Consensus 62 ~~~~~ilL-~G~pGtGKTtla~~lA~~---l~~~~~rV~----~~~~---l~~~DliG~~~ 111 (327)
T TIGR01650 62 AYDRRVMV-QGYHGTGKSTHIEQIAAR---LNWPCVRVN----LDSH---VSRIDLVGKDA 111 (327)
T ss_pred hcCCcEEE-EeCCCChHHHHHHHHHHH---HCCCeEEEE----ecCC---CChhhcCCCce
Confidence 45667888 899999999999988644 446999999 6654 56667888864
No 204
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=67.88 E-value=2.6 Score=41.72 Aligned_cols=40 Identities=5% Similarity=-0.114 Sum_probs=32.0
Q ss_pred cccCCCCCCCChhHHHHHhhhcCc-ccCCCceecCChhhhhhhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAE-ITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~-R~~~pFV~vn~~~~C~aipe 231 (687)
++++.|+||+||-.+|++|-..-. -...+|+.+| |....+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d----~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRID----MSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE----GGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh----hhcccc
Confidence 344489999999998888876655 5667999999 888777
No 205
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.83 E-value=3.7 Score=49.60 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=41.5
Q ss_pred CccccccCCCCCCCcccccc----------hhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 155 GSIGVNGGDGSDDGSGTQSS----------WTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 155 ~~~g~~~~D~sG~G~~aqS~----------~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
...++...|+.|-..+-+.. -.=..+-|.-|.-||+ +|+.||||-|+|+||= .-++=||+.|.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL-~GPPGTGKTLLAKAiA---GEAgVPF~svS 376 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLL-VGPPGTGKTLLAKAIA---GEAGVPFFSVS 376 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEE-ECCCCCcHHHHHHHHh---cccCCceeeec
Confidence 34566777877765443211 0111111355666999 8999999999999995 34556999987
No 206
>PRK07261 topology modulation protein; Provisional
Probab=67.53 E-value=2.9 Score=41.08 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=22.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||+++|+.|... .+-|+|..+
T Consensus 3 i~i-~G~~GsGKSTla~~l~~~---~~~~~i~~D 32 (171)
T PRK07261 3 IAI-IGYSGSGKSTLARKLSQH---YNCPVLHLD 32 (171)
T ss_pred EEE-EcCCCCCHHHHHHHHHHH---hCCCeEecC
Confidence 566 799999999999998533 344666655
No 207
>PRK07695 transcriptional regulator TenI; Provisional
Probab=67.44 E-value=74 Score=31.88 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=51.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
+..+-..+.+.+++.+.. + ...|.|++.. .|. ..|+++++++... -.+|||.+-+- +.+.+.+++
T Consensus 95 ~~~ig~s~~s~e~a~~a~-~--~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~ 167 (201)
T PRK07695 95 YLHVGYSVHSLEEAIQAE-K--NGADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVL 167 (201)
T ss_pred CCEEEEeCCCHHHHHHHH-H--cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHH
Confidence 333334567777776544 3 5789998875 442 2367888888765 46999988776 788999999
Q ss_pred hCCCCEE
Q 005631 89 SKGAVDF 95 (687)
Q Consensus 89 ~aGA~DY 95 (687)
..||+.+
T Consensus 168 ~~Ga~gv 174 (201)
T PRK07695 168 AAGVSGI 174 (201)
T ss_pred HcCCCEE
Confidence 9998876
No 208
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=67.29 E-value=3.7 Score=42.26 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=20.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
.....||+ .|+.||||.++|+.|+..=+
T Consensus 20 aG~h~lLl-~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 20 AGGHHLLL-IGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp HCC--EEE-ES-CCCTHHHHHHHHHHCS-
T ss_pred cCCCCeEE-ECCCCCCHHHHHHHHHHhCC
Confidence 45677999 79999999999999986544
No 209
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=67.05 E-value=22 Score=32.19 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCC-CceEEEEecC
Q 005631 7 MLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRK-NLPVIMMSSL 78 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p-~iPVIvmTa~ 78 (687)
.++..+++..||+++.. .....+.++.+.+ ..||+|.+-. +.. ...+.++..+++. .+ +++|++=-.+
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~--~p~~~~ivvGG~~ 89 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKE--LGIDIPVVVGGAH 89 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHh--cCCCCeEEEeCCc
Confidence 45677789999995433 2356677777777 8999999988 543 3456677777766 35 6766654433
No 210
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=66.99 E-value=96 Score=33.09 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE------EEeCCCCHHHHHHHHHHHHHHH
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD------FLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D------YL~KP~~~eeL~~~L~~alr~~ 116 (687)
++++.+|++. -.+|||..-+-.+.+.+.+++..||+. +|.+|.-..+++.-|.++++..
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 3667777765 469999999999999999999999875 5667765566666666555543
No 211
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=66.87 E-value=2.7 Score=41.38 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=24.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|.+ +|.+|+||.++|++++..=...+.+-+.++
T Consensus 5 Iwl-tGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 5 IWL-TGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEE-ESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 455 999999999999999866554444555555
No 212
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=66.71 E-value=2.9 Score=43.42 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=15.3
Q ss_pred CCCCCCChhHHHHHhhh
Q 005631 192 DQLAECPDSTCAQVIHS 208 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH~ 208 (687)
.||||+||+|+|+||-.
T Consensus 39 VGESGSGKSLiAK~Ic~ 55 (330)
T COG4170 39 VGESGSGKSLIAKAICG 55 (330)
T ss_pred eccCCCchhHHHHHHhc
Confidence 69999999999999953
No 213
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=66.56 E-value=3.2 Score=50.37 Aligned_cols=38 Identities=5% Similarity=-0.164 Sum_probs=29.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
....++|+ .||+||||..+|++++..--..+-||...+
T Consensus 205 ~~~~n~LL-vGppGvGKT~lae~la~~i~~~~vP~~l~~ 242 (758)
T PRK11034 205 RRKNNPLL-VGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_pred cCCCCeEE-ECCCCCCHHHHHHHHHHHHHhcCCCchhcC
Confidence 45666777 799999999999999977655666666555
No 214
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=66.51 E-value=46 Score=33.14 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=49.8
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
+...+.+.+|+.+.++. .+|+|+||- -| .+=-++++.|+... +. ..|..++--+.+.+.+..+.|++-|-
T Consensus 83 I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~--~~-v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 83 IEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELN--PR-VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHT--TT-SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcC--Cc-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 45689999999999885 699999998 44 22334555555552 44 57778888888888888899975543
No 215
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.38 E-value=32 Score=35.83 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCC-ccEEEEcc-CCCC-C--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 28 LQAWKILEDLTNH-IDLVLTEV-MPCL-S--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 28 ~eALe~L~~~~~~-pDLVLlDl-MP~m-d--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+.++.+.. .. -.+|++|+ .-++ . .+++++++.+. ..+|||+--+-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~--~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSD--IPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHH--cCCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 555555555 33 36999999 6442 3 36788998876 579999999999999999999999999887
No 216
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.22 E-value=58 Score=34.98 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhh--cCCCCceEEEEecCCChH
Q 005631 7 MLLLLCFEIAV--MKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH--KTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 7 ~ll~~lLe~~G--~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~--~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+-+..+ ..+...+.+.+||++.+.. .+|+|++|-| .++.++++.+. ...+++ +|..++.-+++
T Consensus 170 ~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~----~~e~l~~~v~~~~~~~~~~-~ieAsGgIt~~ 241 (273)
T PRK05848 170 EFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNM----SVEEIKEVVAYRNANYPHV-LLEASGNITLE 241 (273)
T ss_pred HHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhhccCCCe-EEEEECCCCHH
Confidence 34445545444 2355689999999999874 6999999863 22333333332 112444 56677777999
Q ss_pred HHHHHHhCCCCEEEe
Q 005631 83 LVFKCLSKGAVDFLV 97 (687)
Q Consensus 83 ~av~Am~aGA~DYL~ 97 (687)
.+.+..+.|++-+.+
T Consensus 242 ni~~ya~~GvD~Isv 256 (273)
T PRK05848 242 NINAYAKSGVDAISS 256 (273)
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999976543
No 217
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=65.94 E-value=46 Score=35.17 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=63.2
Q ss_pred HHHHHHhCCCeEEEE-eCCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-----HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 9 LLLCFEIAVMKVITE-ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 9 l~~lLe~~G~~~V~~-A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-----leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
...+|-..||.+.-. ..|.--|- .|++ ..+ .+++=+ -|-.+| -..|+.|++. -++|||+=.+-+.+
T Consensus 122 Aae~Lv~eGF~VlPY~~dD~v~ar-rLee--~Gc-aavMPl~aPIGSg~G~~n~~~l~iiie~---a~VPviVDAGiG~p 194 (262)
T COG2022 122 AAEQLVKEGFVVLPYTTDDPVLAR-RLEE--AGC-AAVMPLGAPIGSGLGLQNPYNLEIIIEE---ADVPVIVDAGIGTP 194 (262)
T ss_pred HHHHHHhCCCEEeeccCCCHHHHH-HHHh--cCc-eEeccccccccCCcCcCCHHHHHHHHHh---CCCCEEEeCCCCCh
Confidence 345677789985322 33444443 3444 222 244445 454444 3577888877 49999999999999
Q ss_pred HHHHHHHhCCCCEEEeCC-----CCHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKP-----IRKNELKNLWQHVW 113 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP-----~~~eeL~~~L~~al 113 (687)
..+..+|+.|++..|.-- -++-.+-.....+.
T Consensus 195 SdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 195 SDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred hHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 999999999999999753 24444444444444
No 218
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=65.67 E-value=2.5 Score=39.11 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=17.8
Q ss_pred CCCCCCCChhHHHHHhhhcCc
Q 005631 191 SDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 191 ~~GEsGTGKEl~AraIH~~S~ 211 (687)
+.|.+|+||.++|+.++..-.
T Consensus 4 ~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEESTTSSHHHHHHHHHHHST
T ss_pred EECCCCCCHHHHHHHHHHHCC
Confidence 379999999999999985544
No 219
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=65.50 E-value=4.4 Score=48.94 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+..||+ .|++||||.++|++|...+. .+|+.|.
T Consensus 485 ~~~~giLL-~GppGtGKT~lakalA~e~~---~~fi~v~ 519 (733)
T TIGR01243 485 RPPKGVLL-FGPPGTGKTLLAKAVATESG---ANFIAVR 519 (733)
T ss_pred CCCceEEE-ECCCCCCHHHHHHHHHHhcC---CCEEEEe
Confidence 34455888 89999999999999987664 5899998
No 220
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=65.05 E-value=86 Score=32.99 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC-CCH
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP-IRK 102 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP-~~~ 102 (687)
.......+.+.. ..+|.|++|+ -...+--++...|+....... .+|+=....+...+.+++..||...+.-= -+.
T Consensus 20 ~~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~-~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~ 96 (249)
T TIGR02311 20 LADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAPYPS-SPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETA 96 (249)
T ss_pred CCCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCC-CcEEECCCCCHHHHHHHhCCCCCEEEecCcCCH
Confidence 334566777776 6799999999 555677777777776532233 44444455567789999999999877644 467
Q ss_pred HHHHHHHHH
Q 005631 103 NELKNLWQH 111 (687)
Q Consensus 103 eeL~~~L~~ 111 (687)
++++.+++.
T Consensus 97 e~a~~~v~~ 105 (249)
T TIGR02311 97 EQAEAAVAA 105 (249)
T ss_pred HHHHHHHHH
Confidence 887766654
No 221
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=64.82 E-value=5.3 Score=42.81 Aligned_cols=59 Identities=10% Similarity=-0.019 Sum_probs=39.0
Q ss_pred cccCCCCCCCcccccchhhhhh-hc------CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 159 VNGGDGSDDGSGTQSSWTKKAV-EV------DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 159 ~~~~D~sG~G~~aqS~~~k~~~-ea------~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+.+.|++|+--+-+-|.....+ +- =.+.+||- .|++||||-+.|+|+ +.-..-||+.|+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLF-yGppGTGKTm~Akal---ane~kvp~l~vk 183 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLF-YGPPGTGKTMMAKAL---ANEAKVPLLLVK 183 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEE-ECCCCccHHHHHHHH---hcccCCceEEec
Confidence 4455667665555443322111 10 24556888 899999999999998 455667999999
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=64.67 E-value=3.5 Score=38.15 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=24.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++| .|++|+||.++|+.|-..-...+++.+-++
T Consensus 2 ~~i-~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILV-FGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeE-eCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 345 799999999999988655555566666666
No 223
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=64.59 E-value=5.7 Score=42.41 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=24.2
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCc--ccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAE--ITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~--R~~~pFV~vn 221 (687)
.+++ .|++||||.++|+++...-. ....+|+.+|
T Consensus 38 ~lll-~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 38 HLLV-QGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 4666 89999999999988654322 1234678888
No 224
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=64.06 E-value=75 Score=33.27 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCccE-EEEcc-C-C--CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCC-CCEEEe---
Q 005631 27 GLQAWKILEDLTNHIDL-VLTEV-M-P--CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLV--- 97 (687)
Q Consensus 27 g~eALe~L~~~~~~pDL-VLlDl-M-P--~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aG-A~DYL~--- 97 (687)
..+..+.+.+ ..+|. +++|+ - . ..-.+++++++++. ..+|||..-+-.+.+.+.++++.| ++..+.
T Consensus 157 ~~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 157 AVEWAKEVEK--LGAGEILLTSMDKDGTKSGYDLELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHHHHH--cCCCEEEEeCcCcccCCCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 3455566665 56774 45454 1 1 11236888999876 579999999999999999999988 877444
Q ss_pred ---CCCCHHHHHHHHH
Q 005631 98 ---KPIRKNELKNLWQ 110 (687)
Q Consensus 98 ---KP~~~eeL~~~L~ 110 (687)
.-++..+++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 232 FHYREITIGEVKEYLA 247 (254)
T ss_pred HhCCCCCHHHHHHHHH
Confidence 3356666655443
No 225
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.39 E-value=3 Score=37.45 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=18.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S 210 (687)
|+| .|.+|+||.++|+.+...-
T Consensus 1 I~i-~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGI-SGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHH
T ss_pred CEE-ECCCCCCHHHHHHHHHHHH
Confidence 456 7999999999999997553
No 226
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=63.10 E-value=35 Score=37.29 Aligned_cols=31 Identities=13% Similarity=-0.046 Sum_probs=23.5
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..||| +|+||.||+.+|=++.... ..||+-|
T Consensus 147 ~gvli-~G~sg~GKS~lal~Li~rg----~~lvaDD 177 (304)
T TIGR00679 147 VGVLI-TGKSGVGKSETALELINRG----HRLVADD 177 (304)
T ss_pred EEEEE-EcCCCCCHHHHHHHHHHcC----CceeecC
Confidence 34788 8999999998888776543 4588854
No 227
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=62.96 E-value=41 Score=34.71 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+..+.+.. ...-+|++|+ --+ +. .+++++++.+. ..+|||+=-+-.+.+.+.++.+.||+..++
T Consensus 142 ~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 45556666655 3347999999 433 33 47899999876 579999888899999999999999998876
No 228
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=62.65 E-value=93 Score=32.93 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCC-CCHHHHHHHHHhhcCCC-CceEEEEecCCCh
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKTRK-NLPVIMMSSLDSM 81 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~-mdGleLL~~Ir~~~~~p-~iPVIvmTa~~d~ 81 (687)
..++... +..|..++..+.+.+|+.+.+. ..+|+|-+.- +-. ...++++.+|... .| ..++|..++-.+.
T Consensus 150 ~~li~~a-~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d~~~~~~l~~~--~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 150 KELLDYA-HSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVDLETTERLAPL--IPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHH-HHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCCHHHHHHHHHh--CCCCCEEEEEeCCCCH
Confidence 3344444 4468888888999999976654 4688876542 211 1126677777654 24 4689999999999
Q ss_pred HHHHHHHhCCCCEEEe
Q 005631 82 GLVFKCLSKGAVDFLV 97 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~ 97 (687)
+.+.+++..||+.+++
T Consensus 224 ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 224 EDLKRLAKAGADAVLV 239 (260)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999875
No 229
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=62.55 E-value=4.6 Score=44.46 Aligned_cols=26 Identities=8% Similarity=-0.155 Sum_probs=21.5
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
...|+| .|++||||++++|+|+..-+
T Consensus 25 ~g~vli-~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 25 IGGVMV-MGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred CCeEEE-EcCCCCCHHHHHHHHHHhhc
Confidence 345888 79999999999999996553
No 230
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=61.88 E-value=1.1 Score=45.70 Aligned_cols=71 Identities=32% Similarity=0.328 Sum_probs=56.3
Q ss_pred CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Q 005631 39 NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 109 (687)
Q Consensus 39 ~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L 109 (687)
..+|+++.++ ||.+.++.++.++........++++++............+..++.+|+.+|....++....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 133 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSR 133 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCC
Confidence 4689999999 9999999999988864445667778888777777788888888999999998854444433
No 231
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=61.51 E-value=4.3 Score=41.15 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=20.0
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITG 214 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~ 214 (687)
|+-+||.||+||+++|.++-..=...+
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 555599999999999988754433333
No 232
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=61.13 E-value=5.6 Score=38.08 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=20.9
Q ss_pred CCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 192 DQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.|++|+||+++|+.|-... +.+||..+
T Consensus 4 ~G~~GsGKSTla~~l~~~l---~~~~v~~D 30 (163)
T TIGR01313 4 MGVAGSGKSTIASALAHRL---GAKFIEGD 30 (163)
T ss_pred ECCCCCCHHHHHHHHHHhc---CCeEEeCc
Confidence 6999999999999987654 34565544
No 233
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=61.04 E-value=42 Score=35.48 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=70.4
Q ss_pred HHHHHHhCCCeEEEEeCCHHH--HHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 9 LLLCFEIAVMKVITEATNGLQ--AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~e--ALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
++..|..... +|.......+ ..|++.. ..||.+++|. --..|.-.++.+|+....++..|||-+.. ++...+.
T Consensus 8 fK~~L~~g~~-qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ik 83 (255)
T COG3836 8 FKAALAAGRP-QIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIK 83 (255)
T ss_pred HHHHHhCCCc-eEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHH
Confidence 3444443333 3555555554 3466666 7899999999 88888889999999887778888887654 6788999
Q ss_pred HHHhCCCCEEEeCCCC-HHHHHHHH
Q 005631 86 KCLSKGAVDFLVKPIR-KNELKNLW 109 (687)
Q Consensus 86 ~Am~aGA~DYL~KP~~-~eeL~~~L 109 (687)
+.+..||..+|+-=++ .++-+..+
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V 108 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAV 108 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHH
Confidence 9999999999986664 45544444
No 234
>PRK00131 aroK shikimate kinase; Reviewed
Probab=61.01 E-value=4.5 Score=38.50 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=22.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++ .|.+|+||+++|+.+ +.+.+-+||-.+
T Consensus 7 i~l-~G~~GsGKstla~~L---a~~l~~~~~d~d 36 (175)
T PRK00131 7 IVL-IGFMGAGKSTIGRLL---AKRLGYDFIDTD 36 (175)
T ss_pred EEE-EcCCCCCHHHHHHHH---HHHhCCCEEECh
Confidence 555 899999999999988 344455777655
No 235
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.85 E-value=33 Score=38.83 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 39 NHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 39 ~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
..+|+|++|. -+. ..-++++++|++. +|+++|| +-.-.+.+.+..++++||+-..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 5799999999 764 4566889999876 6787744 4455678899999999988765
No 236
>PRK06762 hypothetical protein; Provisional
Probab=60.83 E-value=4.4 Score=38.90 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=22.5
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++++|.+|+||+++|+.++..-+ ..++.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~ 34 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG---RGTLLVS 34 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEEec
Confidence 334489999999999999986542 2455555
No 237
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=60.72 E-value=85 Score=32.69 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-C---CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC-CCCEEEe--
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-GAVDFLV-- 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-M---P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a-GA~DYL~-- 97 (687)
+..+..+.+.. ..++ |+++|+ - -.+-.+++++++++. ..+|||.--+-.+.+.+.++++. |++..++
T Consensus 154 ~~~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~ 228 (253)
T PRK02083 154 DAVEWAKEVEE--LGAGEILLTSMDRDGTKNGYDLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAAS 228 (253)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhH
Confidence 34455566665 5665 667664 2 222347788888876 47999999999999999999975 9988877
Q ss_pred ----CCCCHHHHHHHHH
Q 005631 98 ----KPIRKNELKNLWQ 110 (687)
Q Consensus 98 ----KP~~~eeL~~~L~ 110 (687)
.-+++.+++..+.
T Consensus 229 al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 229 IFHFGEITIGELKAYLA 245 (253)
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 3466666665553
No 238
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.58 E-value=1.3e+02 Score=33.29 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCC-CeEEE-EeCCHHHHHHHHHhhCCCccEEEEccCCC------------CC--HHHHHHHHHhhcCCCC
Q 005631 6 AMLLLLCFEIAV-MKVIT-EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS--GVALLSKIMSHKTRKN 69 (687)
Q Consensus 6 r~ll~~lLe~~G-~~~V~-~A~sg~eALe~L~~~~~~pDLVLlDlMP~------------md--GleLL~~Ir~~~~~p~ 69 (687)
..+++.+-+... ..++. .+.+.++|..++.. .+|+|++-.-|+ .. ++..+..+++. ..
T Consensus 128 ~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~---~~ 201 (326)
T PRK05458 128 INMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA---AR 201 (326)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH---cC
Confidence 344555544443 44333 47899999877764 688877442222 12 45568888765 36
Q ss_pred ceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 70 LPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 70 iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
+|||.-.+-.....+++|+..||+.+..=
T Consensus 202 ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 202 KPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred CCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 99999999999999999999999988764
No 239
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=60.34 E-value=33 Score=39.94 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+-.+.|-+ ...|+|.+|. -. ...-++++++||+. +|+++||+ ..-.+.+.+..++++||+...+
T Consensus 248 ~~~~r~~~l~~--ag~d~i~iD~~~g~~~~~~~~i~~ik~~--~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVK--AGVDVVVLDSSQGDSIYQLEMIKYIKKT--YPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHH--cCCCEEEEeCCCCCcHHHHHHHHHHHHh--CCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 44444444444 5799999999 32 23345899999986 57776654 3346788999999999998755
No 240
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.32 E-value=80 Score=36.48 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHHHHhCC-CeEEEEeC------CHHHHHHHHHhhCCCccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEec
Q 005631 7 MLLLLCFEIAV-MKVITEAT------NGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSS 77 (687)
Q Consensus 7 ~ll~~lLe~~G-~~~V~~A~------sg~eALe~L~~~~~~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa 77 (687)
..+...|+..| ++ |...+ +.++..+.+.+ ..||||.+-. -+.. ...++++.+|+. .|+++||+=-.
T Consensus 26 ~~lAa~L~~~G~~~-V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~--~P~~~iV~GG~ 100 (497)
T TIGR02026 26 AYIGGALLDAGYHD-VTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARER--LPNAIIVLGGI 100 (497)
T ss_pred HHHHHHHHhcCCcc-eEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHH--CCCCEEEEcCC
Confidence 34556677789 55 44432 33455566776 7899999977 5544 355788888877 58887776544
Q ss_pred CCChHHHHHHHh-CCCCEEEeCCCCHHHHHHHHHH
Q 005631 78 LDSMGLVFKCLS-KGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 78 ~~d~~~av~Am~-aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
+.+. ...+++. ....||++.--....|...++.
T Consensus 101 h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~ 134 (497)
T TIGR02026 101 HPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAA 134 (497)
T ss_pred CcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHH
Confidence 5442 2344554 4567999987555555555544
No 241
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=60.28 E-value=4.4 Score=39.29 Aligned_cols=33 Identities=15% Similarity=-0.062 Sum_probs=22.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++| .|++||||.++|.-|=....+.+.+.+-+.
T Consensus 2 ~li-~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLL-SGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEE-EcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 456 799999999988754333334556666655
No 242
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=60.01 E-value=49 Score=33.64 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=50.0
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-CCC---CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-MPC---LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-MP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.+.+ ..++ ++++|+ .-+ .-.+++++++++. -.+|||...+-.+.+.+.++++.||+.+++
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 45566676766 5565 556666 322 1347888888876 479999999999999999999999999776
No 243
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.45 E-value=73 Score=34.19 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=55.5
Q ss_pred HHHHHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCCC----
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS---- 80 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~d---- 80 (687)
.+++..|.+ ...|++=+-+ . |-.|| +++++.+|+. ...+|||+||-+..
T Consensus 34 ~e~i~~L~~--~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~--~~~~Pivlm~Y~Npi~~~ 109 (265)
T COG0159 34 LEIIKTLVE--AGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK--GVKVPIVLMTYYNPIFNY 109 (265)
T ss_pred HHHHHHHHh--CCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--CCCCCEEEEEeccHHHHh
Confidence 344444445 6688766655 3 34555 6777778765 48999999998664
Q ss_pred --hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 81 --MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 81 --~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
..-+.+|.+.|++.+|+-.+.+++-.. +..+.+
T Consensus 110 Gie~F~~~~~~~GvdGlivpDLP~ee~~~-~~~~~~ 144 (265)
T COG0159 110 GIEKFLRRAKEAGVDGLLVPDLPPEESDE-LLKAAE 144 (265)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCChHHHHH-HHHHHH
Confidence 334678889999999998777766553 334433
No 244
>PRK06217 hypothetical protein; Validated
Probab=59.13 E-value=6.4 Score=38.77 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=24.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|-+|+||+++|+.|...- +-|||..|
T Consensus 4 I~i-~G~~GsGKSTla~~L~~~l---~~~~~~~D 33 (183)
T PRK06217 4 IHI-TGASGSGTTTLGAALAERL---DIPHLDTD 33 (183)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHc---CCcEEEcC
Confidence 566 7999999999999998654 34777766
No 245
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=59.04 E-value=28 Score=35.25 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=40.9
Q ss_pred eEEEEeCCHHHHHHHHHhh-CCCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEE--ecCCChHHHHHHHhCCCC
Q 005631 19 KVITEATNGLQAWKILEDL-TNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAV 93 (687)
Q Consensus 19 ~~V~~A~sg~eALe~L~~~-~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvm--Ta~~d~~~av~Am~aGA~ 93 (687)
..|..+.+.++|++.+++. +..|-+|.+|. -|..=.++-++++... .+-|++++ |+++-.+++.+ ..
T Consensus 82 ~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~---~~~P~LllFGTGwGL~~ev~~-----~~ 153 (185)
T PF09936_consen 82 SLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEE---EDRPVLLLFGTGWGLAPEVME-----QC 153 (185)
T ss_dssp TTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH-----S-EEEEE--TT---HHHHT-----T-
T ss_pred hHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhc---cCCeEEEEecCCCCCCHHHHH-----hc
Confidence 3578999999999998753 35689999999 5666666666555433 23444444 88876665544 36
Q ss_pred EEEeCCCCH
Q 005631 94 DFLVKPIRK 102 (687)
Q Consensus 94 DYL~KP~~~ 102 (687)
||+..|+.-
T Consensus 154 D~iLePI~g 162 (185)
T PF09936_consen 154 DYILEPIRG 162 (185)
T ss_dssp SEEB--TTT
T ss_pred CeeEccccc
Confidence 899999853
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=57.97 E-value=13 Score=44.02 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+.+.-||+ .|+.|+||-|+|+|+-.-+. -.||+|-
T Consensus 543 ~~PsGvLL-~GPPGCGKTLlAKAVANEag---~NFisVK 577 (802)
T KOG0733|consen 543 DAPSGVLL-CGPPGCGKTLLAKAVANEAG---ANFISVK 577 (802)
T ss_pred CCCCceEE-eCCCCccHHHHHHHHhhhcc---CceEeec
Confidence 55666999 69999999999999964443 4799987
No 247
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=57.90 E-value=55 Score=34.33 Aligned_cols=65 Identities=20% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHHHHhhCCCccEEEEcc-CCCC--CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 29 QAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 29 eALe~L~~~~~~pDLVLlDl-MP~m--dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.+.+ ...|.|.+|. .|+. -.++++++|++. .+.+|||-.-+-.+.+.+.++++.||+...+
T Consensus 152 ~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~--~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEE--FNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHh--cCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 44455666 7799999999 8764 358899999876 3459999888888899999999999988754
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=57.32 E-value=5.7 Score=40.82 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=24.0
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+-..-+++ +|.||+||++|-+.|- ..+|...--|.++
T Consensus 26 ~~Gef~fl-~GpSGAGKSTllkLi~-~~e~pt~G~i~~~ 62 (223)
T COG2884 26 PKGEFVFL-TGPSGAGKSTLLKLIY-GEERPTRGKILVN 62 (223)
T ss_pred cCceEEEE-ECCCCCCHHHHHHHHH-hhhcCCCceEEEC
Confidence 33444777 8999999999999984 3333333334433
No 249
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.22 E-value=7.8 Score=43.67 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=32.4
Q ss_pred hhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCCh
Q 005631 176 TKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAA 223 (687)
Q Consensus 176 ~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~ 223 (687)
..+.++......|++ .|+.||||.++|++|=. -.+-.|+.++..
T Consensus 39 lrr~v~~~~l~SmIl-~GPPG~GKTTlA~liA~---~~~~~f~~~sAv 82 (436)
T COG2256 39 LRRAVEAGHLHSMIL-WGPPGTGKTTLARLIAG---TTNAAFEALSAV 82 (436)
T ss_pred HHHHHhcCCCceeEE-ECCCCCCHHHHHHHHHH---hhCCceEEeccc
Confidence 345555566666777 59999999999999954 445578887743
No 250
>PRK08118 topology modulation protein; Reviewed
Probab=57.15 E-value=5.4 Score=39.12 Aligned_cols=30 Identities=10% Similarity=-0.126 Sum_probs=22.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||+++|+.|-. +.+-|++.+|
T Consensus 4 I~I-~G~~GsGKSTlak~L~~---~l~~~~~~lD 33 (167)
T PRK08118 4 IIL-IGSGGSGKSTLARQLGE---KLNIPVHHLD 33 (167)
T ss_pred EEE-ECCCCCCHHHHHHHHHH---HhCCCceecc
Confidence 566 69999999999999853 3444666655
No 251
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=56.54 E-value=93 Score=31.48 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=45.7
Q ss_pred EEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe--CCCCHHHHHHHHHHH
Q 005631 43 LVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--KPIRKNELKNLWQHV 112 (687)
Q Consensus 43 LVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~--KP~~~eeL~~~L~~a 112 (687)
|-++|. .--...++.++.|++. .++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 444454 3334567888888876 489999876556666899999999999973 224445555555544
No 252
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=56.50 E-value=3.5 Score=39.56 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ai 229 (687)
...++| .|++|+||..+.+.+-..-.....-|+.++ |...
T Consensus 24 ~~~~ll-~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~----~~~~ 63 (185)
T PF13191_consen 24 PRNLLL-TGESGSGKTSLLRALLDRLAERGGYVISIN----CDDS 63 (185)
T ss_dssp ---EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEE----EETT
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHhcCCEEEEEE----Eecc
Confidence 344666 899999999988854433333333477777 5555
No 253
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.50 E-value=6.1 Score=46.00 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=27.1
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-|.-||+ +|+.||||-|+||||- .-++=||....
T Consensus 335 KLPKGVLL-vGPPGTGKTlLARAvA---GEA~VPFF~~s 369 (752)
T KOG0734|consen 335 KLPKGVLL-VGPPGTGKTLLARAVA---GEAGVPFFYAS 369 (752)
T ss_pred cCCCceEE-eCCCCCchhHHHHHhh---cccCCCeEecc
Confidence 34555999 8999999999999994 44566887744
No 254
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=56.13 E-value=7 Score=40.40 Aligned_cols=54 Identities=9% Similarity=-0.070 Sum_probs=32.5
Q ss_pred CCccccCCCCCCCChhHHH-HHhhhcCcccCCCceecCChhhhhhhhhhhhhh-hccCCccc
Q 005631 185 PRHMSPSDQLAECPDSTCA-QVIHSNAEITGSRRVPVTAAKECQDHEERCENF-AKRSRDLD 244 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~A-raIH~~S~R~~~pFV~vn~~~~C~aipe~L~ES-elFGh~l~ 244 (687)
...+++ .|++||||.++| +.+...- +.+.+.+-+. +..-|+++++. .-||.+++
T Consensus 24 g~~~~i-~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~----~e~~~~~~~~~~~~~g~~~~ 79 (230)
T PRK08533 24 GSLILI-EGDESTGKSILSQRLAYGFL-QNGYSVSYVS----TQLTTTEFIKQMMSLGYDIN 79 (230)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe----CCCCHHHHHHHHHHhCCchH
Confidence 344677 799999999997 5555332 2334555555 44555555544 24566553
No 255
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=56.08 E-value=33 Score=35.02 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=51.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-C---CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCC
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG 91 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-M---P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aG 91 (687)
.++. |.+..+.+++.+++.. ..|+|-+|. . | .+-.+|+++|++. + +++|..-.+.+++..|.++|
T Consensus 44 ~~~~-V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~--~----~l~MADist~ee~~~A~~~G 112 (192)
T PF04131_consen 44 PDSD-VYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEK--Y----QLVMADISTLEEAINAAELG 112 (192)
T ss_dssp TTSS---BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHC--T----SEEEEE-SSHHHHHHHHHTT
T ss_pred CCCC-eEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHh--C----cEEeeecCCHHHHHHHHHcC
Confidence 3555 7789999999999875 799999999 4 6 7777899999876 2 78888889999999999999
Q ss_pred CCEEEe
Q 005631 92 AVDFLV 97 (687)
Q Consensus 92 A~DYL~ 97 (687)
+|||-
T Consensus 113 -~D~I~ 117 (192)
T PF04131_consen 113 -FDIIG 117 (192)
T ss_dssp --SEEE
T ss_pred -CCEEE
Confidence 56664
No 256
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=55.88 E-value=6.6 Score=32.87 Aligned_cols=19 Identities=16% Similarity=-0.041 Sum_probs=16.4
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
++| +|++|+||+++-.||.
T Consensus 26 tli-~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLI-TGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 566 8999999999988874
No 257
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=55.70 E-value=5.8 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 191 SDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 191 ~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+.|.+|+||+++|+.|-..-...+-..+.++
T Consensus 4 i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3899999999999999776543333334444
No 258
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=55.37 E-value=2.5e+02 Score=29.35 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=67.3
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--------CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--------MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--------MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
.+..|.-...-+++.+|++-..+. .+|+|=+-+ -|....++|++++.+ ..++||.=-.+.+++.+
T Consensus 123 ~k~~~~l~MAD~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~----~~~~vIAEGr~~tP~~A 195 (229)
T COG3010 123 IKYPGQLAMADCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD----AGCRVIAEGRYNTPEQA 195 (229)
T ss_pred hhcCCcEEEeccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHHHHHHh----CCCeEEeeCCCCCHHHH
Confidence 444555545667889999877653 688774322 345567899999986 47889988889999999
Q ss_pred HHHHhCCCCEEEeCC-C-CHHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVKP-I-RKNELKNLWQH 111 (687)
Q Consensus 85 v~Am~aGA~DYL~KP-~-~~eeL~~~L~~ 111 (687)
.++++.||+..++=- + +++++......
T Consensus 196 k~a~~~Ga~aVvVGsAITRp~~It~~F~~ 224 (229)
T COG3010 196 KKAIEIGADAVVVGSAITRPEEITQWFVD 224 (229)
T ss_pred HHHHHhCCeEEEECcccCCHHHHHHHHHH
Confidence 999999999998876 2 45555444333
No 259
>PRK04328 hypothetical protein; Provisional
Probab=55.29 E-value=6.4 Score=41.09 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=35.5
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhh-hccCCcc
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENF-AKRSRDL 243 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ES-elFGh~l 243 (687)
...+|| .|++||||+++|.-+=...-+.+.+-+-|. ...-|+.+.+- .-||-|+
T Consensus 23 gs~ili-~G~pGsGKT~l~~~fl~~~~~~ge~~lyis----~ee~~~~i~~~~~~~g~d~ 77 (249)
T PRK04328 23 RNVVLL-SGGPGTGKSIFSQQFLWNGLQMGEPGVYVA----LEEHPVQVRRNMRQFGWDV 77 (249)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHhcCCcEEEEE----eeCCHHHHHHHHHHcCCCH
Confidence 334777 899999999877654333345566767777 66667766643 4457665
No 260
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=55.01 E-value=7.3 Score=46.50 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=30.3
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
+..|++ .|++||||.++|++|.. +.+-||+.++ |..+.
T Consensus 185 ~~gill-~G~~G~GKt~~~~~~a~---~~~~~f~~is----~~~~~ 222 (644)
T PRK10733 185 PKGVLM-VGPPGTGKTLLAKAIAG---EAKVPFFTIS----GSDFV 222 (644)
T ss_pred CCcEEE-ECCCCCCHHHHHHHHHH---HcCCCEEEEe----hHHhH
Confidence 445888 79999999999999964 4456999998 66543
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=54.55 E-value=3.1 Score=37.77 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=26.7
Q ss_pred cccCCCCCCCChhHHHHHhhhcCccc-----CCCceecCChhhhhhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEIT-----GSRRVPVTAAKECQDHE 230 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~-----~~pFV~vn~~~~C~aip 230 (687)
++| .|++|+||..+++.+...-... ..+++.++ |....
T Consensus 7 ~~i-~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 49 (131)
T PF13401_consen 7 LVI-SGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSR 49 (131)
T ss_dssp EEE-EE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHS
T ss_pred cEE-EcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCC
Confidence 556 7999999999998887764332 45677777 55544
No 262
>PRK00889 adenylylsulfate kinase; Provisional
Probab=54.27 E-value=6.1 Score=38.41 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=24.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++.+.|.+|+||+++|+.|-..-...+..++.++
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3344899999999999998765544444555566
No 263
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=54.17 E-value=5.7 Score=39.36 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=21.6
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
++....++| .|++|+||.+++++|=..
T Consensus 22 v~~g~~i~I-~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 22 VEARKNILI-SGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HhCCCEEEE-ECCCCCCHHHHHHHHHhh
Confidence 355667788 799999999999988543
No 264
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.04 E-value=1.4e+02 Score=32.72 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCC--CeEEEEe---------CCHHHHHHHHHhhC-CCccEEEEcc-CC--------------CCCH--
Q 005631 4 LLAMLLLLCFEIAV--MKVITEA---------TNGLQAWKILEDLT-NHIDLVLTEV-MP--------------CLSG-- 54 (687)
Q Consensus 4 ~~r~ll~~lLe~~G--~~~V~~A---------~sg~eALe~L~~~~-~~pDLVLlDl-MP--------------~mdG-- 54 (687)
+..++++.+-+..| +.+..-. -+.++++++++... ..+|+|-+-. .. ...+
T Consensus 201 f~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
T cd04733 201 LLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYF 280 (338)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhh
Confidence 44556666666554 4322212 35666665554321 4577765322 11 0112
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+++.++|++. -++|||+.....+.+.+.++++.|..|++.
T Consensus 281 ~~~~~~ik~~---v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKV---TKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 5778888876 479999998888999999999999888864
No 265
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.90 E-value=71 Score=33.65 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH-hCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL-SKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am-~aGA~DYL~ 97 (687)
+..+.++.+.+ ..++ ++++|+ --+ +. -+++++++++. ..+|||.--+-.+.+.+.+++ ..|++..++
T Consensus 153 ~~~e~~~~~~~--~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEA--LGAGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 45666677766 4555 788877 322 23 46788888876 679999999899999999999 789887654
No 266
>PRK04302 triosephosphate isomerase; Provisional
Probab=53.79 E-value=1.7e+02 Score=29.96 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=55.8
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc---CC---C-----CCH-HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV---MP---C-----LSG-VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 14 e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl---MP---~-----mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
...|+..+.++.+.+++.. +.. ..+|+|-..- +. + -.+ .++++.|++. ...+|||.-.+-.+.
T Consensus 111 ~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~--~~~~pvi~GggI~~~ 185 (223)
T PRK04302 111 KKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV--NPDVKVLCGAGISTG 185 (223)
T ss_pred HHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc--cCCCEEEEECCCCCH
Confidence 4468887877888777665 444 5678776532 10 1 112 3456667764 257899998888899
Q ss_pred HHHHHHHhCCCCEEEeCC
Q 005631 82 GLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP 99 (687)
+.+.+++..||+.+|+=-
T Consensus 186 e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 186 EDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHcCCCCEEEEeh
Confidence 999999999999998754
No 267
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=53.65 E-value=7 Score=38.00 Aligned_cols=21 Identities=5% Similarity=-0.099 Sum_probs=17.3
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
++| .|++|+||.++|++|-..
T Consensus 4 ~~i-~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 4 IYV-VGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 445 799999999999998544
No 268
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=53.55 E-value=7.3 Score=42.21 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=40.1
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCccc
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLD 244 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~ 244 (687)
.+-+..+||+ -|+.||||.++|+.+= .+-+.+|+-|. |.. .+..+.++|...-
T Consensus 39 a~~~~~~vll-~G~PG~gKT~la~~lA---~~l~~~~~~i~----~t~---~l~p~d~~G~~~~ 91 (329)
T COG0714 39 ALLAGGHVLL-EGPPGVGKTLLARALA---RALGLPFVRIQ----CTP---DLLPSDLLGTYAY 91 (329)
T ss_pred HHHcCCCEEE-ECCCCccHHHHHHHHH---HHhCCCeEEEe----cCC---CCCHHHhcCchhH
Confidence 3478888999 7999999999999884 44457999999 753 5566666666553
No 269
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=53.33 E-value=19 Score=34.21 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHH--HHHHhhcCCCCceEEEEecCCChHH
Q 005631 7 MLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL--SKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL--~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.....+|..-+.+ |+.- .++..+-. ..+|++|+.+ .+-..-+.+. +..++.. .-+--|+.+-+ ...-.
T Consensus 25 ~~t~~iL~~tple-Vtyr----~t~~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~-mtd~vilalPs-~~qv~ 95 (140)
T COG4999 25 QCTLDILSETPLE-VTYR----PTFSALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALS-MTDFVILALPS-HAQVN 95 (140)
T ss_pred HHHHHHHhcCCce-EEec----ccccccCh--hhhceeeecccccccCCchHHHHHHHHHHh-hhcceEEecCc-HHHHh
Confidence 3445667778888 4332 23333333 5799999999 7654433222 2222221 11222333333 34557
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLW 109 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L 109 (687)
+.+.++.|+.++|.||++...|+-.+
T Consensus 96 AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 96 AEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred HHHHhhcchHhHhhCcchhhhhHHHH
Confidence 78888999999999999998887754
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=53.18 E-value=5.9 Score=42.31 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
.....+-+ .||||+||+++||+|=..=+
T Consensus 37 ~~ge~~gl-VGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 37 KEGETLGL-VGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred cCCCEEEE-EecCCCCHHHHHHHHHcCcC
Confidence 34444445 69999999999999965544
No 271
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=53.14 E-value=1.6e+02 Score=31.39 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE------EeCCCCHHHHHHHHHHHHH
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF------LVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY------L~KP~~~eeL~~~L~~alr 114 (687)
++++.+|++. -.+|||...+-.+.+.+.+++.+||+-. |..|.-+.+++.-+.++++
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 223 LRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 6788888875 3799999999999999999999997533 3345444555555544444
No 272
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=52.89 E-value=42 Score=33.90 Aligned_cols=91 Identities=12% Similarity=0.196 Sum_probs=49.2
Q ss_pred HHhCCCeEEEEeCCH-----HHHHHHHHhhCCCccEEEEccCCCCC-------HHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 13 FEIAVMKVITEATNG-----LQAWKILEDLTNHIDLVLTEVMPCLS-------GVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 13 Le~~G~~~V~~A~sg-----~eALe~L~~~~~~pDLVLlDlMP~md-------GleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
-+..|++++-..-+| .+..++|.+ .+.|++++|+.|.++ -..+++.||+. .|.+|||+++...-
T Consensus 29 aR~l~~~~iNLGfsG~~~le~~~a~~ia~--~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~--hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 29 ARRLGLDVINLGFSGNGKLEPEVADLIAE--IDADLIVLDCGPNMSPEEFRERLDGFVKTIREA--HPDTPILLVSPIPY 104 (178)
T ss_dssp HHHHT-EEEEEE-TCCCS--HHHHHHHHH--S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE----
T ss_pred HHHcCCCeEeeeecCccccCHHHHHHHhc--CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEecCCc
Confidence 344566655554444 345567777 678999999932232 24588888877 69999999985322
Q ss_pred hHHHHHHHhCCCCEEEeCC--CCHHHHHHHHHHHHHHHhc
Q 005631 81 MGLVFKCLSKGAVDFLVKP--IRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP--~~~eeL~~~L~~alr~~~~ 118 (687)
... ++..+ ....+....++++.+....
T Consensus 105 ~~~-----------~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 105 PAG-----------YFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp TTT-----------TS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred ccc-----------ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22221 2456777777777766543
No 273
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=52.80 E-value=51 Score=36.53 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=41.7
Q ss_pred CccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 40 HIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 40 ~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.+|+|++|+ -... .=++.+++||+. +|.++|| --.-.+.+.+..++.+||+...+=
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~--~p~~~vi-aGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREA--FPEHTIM-AGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhh--CCCCeEE-EecccCHHHHHHHHHcCCCEEEEc
Confidence 599999999 5433 346789999976 5765443 222677899999999999988654
No 274
>PF05729 NACHT: NACHT domain
Probab=52.56 E-value=7.7 Score=36.23 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=14.6
Q ss_pred cccCCCCCCCChhHHHHHh
Q 005631 188 MSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI 206 (687)
|+| +|+.|+||+++++.|
T Consensus 3 l~I-~G~~G~GKStll~~~ 20 (166)
T PF05729_consen 3 LWI-SGEPGSGKSTLLRKL 20 (166)
T ss_pred EEE-ECCCCCChHHHHHHH
Confidence 455 899999999987654
No 275
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=52.49 E-value=8.1 Score=41.65 Aligned_cols=38 Identities=11% Similarity=-0.055 Sum_probs=29.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFA 237 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESe 237 (687)
++|+||.||+||++..+++= +--|..|| .+|..|++.-
T Consensus 3 ~vIiTGlSGaGKs~Al~~lE------D~Gy~cvD------NlP~~Ll~~l 40 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALE------DLGYYCVD------NLPPSLLPQL 40 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHH------hcCeeEEc------CCcHHHHHHH
Confidence 34449999999999999884 44577777 6888888754
No 276
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=52.37 E-value=51 Score=35.18 Aligned_cols=77 Identities=18% Similarity=0.402 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCCC----
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS---- 80 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~d---- 80 (687)
.++++.|.+ ...|+|=+.+ . |-.|| ++++++||.. .+.+|||+||-+..
T Consensus 27 ~~~~~~l~~--~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~--~~~~pivlm~Y~N~i~~~ 102 (259)
T PF00290_consen 27 LEILKALEE--AGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKK--EPDIPIVLMTYYNPIFQY 102 (259)
T ss_dssp HHHHHHHHH--TTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHH--CTSSEEEEEE-HHHHHHH
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhcc--CCCCCEEEEeeccHHhcc
Confidence 455555666 6788776666 3 44555 5777788744 48999999998653
Q ss_pred --hHHHHHHHhCCCCEEEeCCCCHHHHHHH
Q 005631 81 --MGLVFKCLSKGAVDFLVKPIRKNELKNL 108 (687)
Q Consensus 81 --~~~av~Am~aGA~DYL~KP~~~eeL~~~ 108 (687)
...+.+|-++|++++|.-.+.++|-...
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP~ee~~~~ 132 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLPPEESEEL 132 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSBGGGHHHH
T ss_pred chHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 3456677789999999988877766433
No 277
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.32 E-value=1.9e+02 Score=29.89 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhC-CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~-~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
..+...+.-.|....+.++|++.++..- ..++ ++++ |-.-.+++.++.|++. +|++-| -.-.--+.+.+..++
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~--~p~~~I-GAGTVl~~~~a~~a~ 84 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE--VPEALI-GAGTVLNPEQLAQAI 84 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH--CCCCEE-EEeeccCHHHHHHHH
Confidence 3445666666788999999998876521 2355 4556 6555799999999976 566433 222234568999999
Q ss_pred hCCCCEEEeCC-CCHHHHHH
Q 005631 89 SKGAVDFLVKP-IRKNELKN 107 (687)
Q Consensus 89 ~aGA~DYL~KP-~~~eeL~~ 107 (687)
++||. |++-| ++. ++..
T Consensus 85 ~aGA~-FivsP~~~~-~vi~ 102 (212)
T PRK05718 85 EAGAQ-FIVSPGLTP-PLLK 102 (212)
T ss_pred HcCCC-EEECCCCCH-HHHH
Confidence 99985 67777 455 4443
No 278
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.29 E-value=1.1e+02 Score=31.75 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCC--CCHH---------------HHHHHHHhhcCCCCceEEEEecC-----CChHHH
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPC--LSGV---------------ALLSKIMSHKTRKNLPVIMMSSL-----DSMGLV 84 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~--mdGl---------------eLL~~Ir~~~~~p~iPVIvmTa~-----~d~~~a 84 (687)
.++++.+.+ . .|+|=+.+ .|+ .||. ++++.++.. ..+|+++|+-. +-...+
T Consensus 21 ~~~~~~l~~--~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~---~~~Pl~lM~y~n~~~~~~~~~i 94 (244)
T PRK13125 21 KEFIIGLVE--L-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD---VSVPIILMTYLEDYVDSLDNFL 94 (244)
T ss_pred HHHHHHHHh--h-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc---CCCCEEEEEecchhhhCHHHHH
Confidence 334444544 4 88887877 655 3564 356666643 57898877532 333447
Q ss_pred HHHHhCCCCEEEeC--CCC-HHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVK--PIR-KNELKNLWQH 111 (687)
Q Consensus 85 v~Am~aGA~DYL~K--P~~-~eeL~~~L~~ 111 (687)
.++.+.|++.++.- |+. .+++...+..
T Consensus 95 ~~~~~~Gadgvii~dlp~e~~~~~~~~~~~ 124 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDYPDDLEKYVEI 124 (244)
T ss_pred HHHHHcCCCEEEECCCCCCcHHHHHHHHHH
Confidence 77888999999985 343 4555544433
No 279
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=52.24 E-value=1e+02 Score=33.81 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCC-h-HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 56 ALLSKIMSHKTRKNLPVIMMSSLDS-M-GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 56 eLL~~Ir~~~~~p~iPVIvmTa~~d-~-~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+..+.+.+.- ...+|.||+|..-. + +....|-+.+.-=| .-|....+|...|...|...
T Consensus 70 ~r~~~~~~l~-~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll-~t~~~t~~~i~~l~~~L~~~ 130 (308)
T PRK05428 70 ERKERLKKLF-SLEPPCIIVTRGLEPPPELLEAAKEAGIPLL-RTPLSTTRLISKLTNYLDRK 130 (308)
T ss_pred HHHHHHHHHh-CCCCCEEEEECcCCCCHHHHHHHHHcCCcEE-EeCCcHHHHHHHHHHHHHHH
Confidence 3333444332 35788888887543 3 34444445555544 44567788888888877654
No 280
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=52.11 E-value=1.5e+02 Score=29.28 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=54.0
Q ss_pred HHhCCCeEE---EEeCCHHHHHHHHHhhCCCccEEEEcc--CC----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 13 FEIAVMKVI---TEATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 13 Le~~G~~~V---~~A~sg~eALe~L~~~~~~pDLVLlDl--MP----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..|...+ ..+.+..++++.+ . ..+|.|++.. .+ ...+.+.++++++. .++||++.-+- +.+.
T Consensus 99 ~~~~g~~~~v~~~~~~t~~e~~~~~-~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~GGI-~~~~ 171 (202)
T cd04726 99 AKKYGKEVQVDLIGVEDPEKRAKLL-K--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAGGI-TPDT 171 (202)
T ss_pred HHHcCCeEEEEEeCCCCHHHHHHHH-H--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEECCc-CHHH
Confidence 344566643 3566888888744 3 5789888864 22 23457777777754 56777766555 5889
Q ss_pred HHHHHhCCCCEEEeC
Q 005631 84 VFKCLSKGAVDFLVK 98 (687)
Q Consensus 84 av~Am~aGA~DYL~K 98 (687)
+.++++.||+.++.=
T Consensus 172 i~~~~~~Gad~vvvG 186 (202)
T cd04726 172 LPEFKKAGADIVIVG 186 (202)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999987653
No 281
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=52.09 E-value=51 Score=34.07 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=51.8
Q ss_pred eCCHHHHHHHHHhhCCCc-cEEEEcc-CC-CCCH--HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 24 ATNGLQAWKILEDLTNHI-DLVLTEV-MP-CLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~p-DLVLlDl-MP-~mdG--leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.-+..+.++.+.+ ..+ .+|++|+ -- -+.| +++++++++. -.+|||.--+-.+.+.+.++.+.|++..|+
T Consensus 146 ~~~~~~~~~~~~~--~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~---~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 146 GIDLEEFAKRLEE--LGAGEIILTDIDRDGTMQGPDLELLKQLAEA---VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEHHHHHHHHHH--TT-SEEEEEETTTTTTSSS--HHHHHHHHHH---HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CcCHHHHHHHHHh--cCCcEEEEeeccccCCcCCCCHHHHHHHHHH---cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3467777887777 444 6999999 43 3444 5788888876 389999999999999999999999988875
No 282
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=51.91 E-value=8.1 Score=32.18 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=17.3
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.| .|.+|+||.++|+++-..
T Consensus 2 i~i-~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAI-TGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 345 799999999999998654
No 283
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=51.76 E-value=6.9 Score=42.75 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=19.9
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
....+=| .||||+||++.|++|=..=+
T Consensus 30 ~GE~lgi-VGESGsGKS~~~~aim~llp 56 (316)
T COG0444 30 KGEILGI-VGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred CCcEEEE-EcCCCCCHHHHHHHHHhccC
Confidence 3333444 69999999999999965443
No 284
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=51.71 E-value=10 Score=40.11 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=18.8
Q ss_pred ccccCCCCCCCChhHHHHHhhhc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
++++ +|+.||||.++|++++..
T Consensus 40 ~~ll-~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 40 HLLF-AGPPGTGKTTAALALARE 61 (319)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHH
Confidence 4666 899999999999999754
No 285
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=51.69 E-value=7.9 Score=34.95 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=14.8
Q ss_pred cccCCCCCCCChhHHHHHh
Q 005631 188 MSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI 206 (687)
|.| .|++|+||.++|+.|
T Consensus 1 I~i-~G~~G~GKS~l~~~l 18 (107)
T PF00910_consen 1 IWI-YGPPGIGKSTLAKEL 18 (107)
T ss_pred CEE-ECCCCCCHHHHHHHH
Confidence 345 799999999998774
No 286
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=51.53 E-value=7.3 Score=38.57 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=17.6
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.+ .|.+|+||+++|+.|...
T Consensus 6 i~l-~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 6 YIL-MGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred EEE-ECCCCCCHHHHHHHHHHh
Confidence 444 799999999999998754
No 287
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=51.31 E-value=48 Score=33.02 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=58.9
Q ss_pred HHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-C-CCC----CHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 11 LCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 11 ~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-M-P~m----dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..++..|+. +.. +..+...++.+.. ..||.|-+|. + -.+ ....+++.|...-....++ |++++-.+..
T Consensus 139 ~~l~~~G~~-l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~~ 214 (240)
T cd01948 139 RRLRALGVR-IALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETEE 214 (240)
T ss_pred HHHHHCCCe-EEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCCHH
Confidence 346778988 333 4566777788887 7899999997 3 232 2355666665442123443 5577888999
Q ss_pred HHHHHHhCCC----CEEEeCCCCH
Q 005631 83 LVFKCLSKGA----VDFLVKPIRK 102 (687)
Q Consensus 83 ~av~Am~aGA----~DYL~KP~~~ 102 (687)
....+...|+ -.|+.||...
T Consensus 215 ~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 215 QLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHcCCCeeeeceeccCCCC
Confidence 9999999998 3456677654
No 288
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=51.13 E-value=7.5 Score=41.10 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=21.3
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhhcC
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S 210 (687)
+++.....+=| .||||+||+++||+|=-.-
T Consensus 28 ~~i~~Ge~lgi-vGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 28 LEIERGETLGI-VGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEecCCCEEEE-EcCCCCCHHHHHHHHhccc
Confidence 33444444545 6999999999999985443
No 289
>PRK05480 uridine/cytidine kinase; Provisional
Probab=51.09 E-value=8 Score=38.76 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=18.2
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|.| .|.+|+||.++|++|...
T Consensus 9 I~I-~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 9 IGI-AGGSGSGKTTVASTIYEE 29 (209)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 556 899999999999999764
No 290
>PRK03846 adenylylsulfate kinase; Provisional
Probab=51.01 E-value=11 Score=37.69 Aligned_cols=37 Identities=14% Similarity=0.008 Sum_probs=24.6
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.+..|.+ +|.+|+||+++|+.|-..-...+...+.++
T Consensus 23 ~~~~i~i-~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWF-TGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 3333555 899999999999999654332334455555
No 291
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=50.67 E-value=6.4 Score=38.07 Aligned_cols=20 Identities=15% Similarity=-0.115 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
++| +|++||||++++.||..
T Consensus 22 ~vi-~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 22 NVI-YGPNGSGKSTILEAIRY 41 (202)
T ss_dssp EEE-EESTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 455 79999999999999953
No 292
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=50.63 E-value=8.1 Score=38.34 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=16.3
Q ss_pred CCCCCCChhHHHHHhhhc
Q 005631 192 DQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH~~ 209 (687)
.|++|+||+++|+.|...
T Consensus 5 ~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 799999999999999654
No 293
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=50.59 E-value=7 Score=39.07 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=23.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++++|.|-+||+.+||+|-...+ .||+.+-
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~---~p~~~l~ 33 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLP---EPWLHLS 33 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSS---S-EEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCc---CCeEEEe
Confidence 344499999999999999988665 5999876
No 294
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=50.30 E-value=16 Score=40.97 Aligned_cols=70 Identities=19% Similarity=0.092 Sum_probs=47.5
Q ss_pred cCCCCCCC-cccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChh----hhhhhhh
Q 005631 161 GGDGSDDG-SGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAK----ECQDHEE 231 (687)
Q Consensus 161 ~~D~sG~G-~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~----~C~aipe 231 (687)
+.|.+|.. .-.|+...+...|...--.|++| |+.||||..+||.|-..|.-.+-.||.+-.++ +|-.|-|
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlW-GppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILW-GPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEe-cCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 34555553 22345566666665444447775 99999999999999999998888899875433 4544443
No 295
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=50.18 E-value=54 Score=37.49 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
.+.+..+++ ..+|+|.+|. -.. ..-++++++|++. ++++|||+ -.-.+.+.+..++++||+-+.
T Consensus 226 ~~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 345554444 4799999999 543 3456788888876 57888876 344578899999999997764
No 296
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=50.16 E-value=8.8 Score=37.65 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=23.7
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++++.|.+|+||+++|++|-..-...+...+.++
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3444899999999999999866543333445555
No 297
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.85 E-value=1.4e+02 Score=30.97 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHhhCCCcc-EEEEcc--CC-CC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 25 TNGLQAWKILEDLTNHID-LVLTEV--MP-CL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pD-LVLlDl--MP-~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.+..+..+.+.+ . ++ |+++|+ +- +. .-++++++|.+. ..+||++=-+-.+.+.+.+.+..|++..++=
T Consensus 30 ~dp~~~a~~~~~--~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSE--Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHH--h-CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 478888888877 5 65 777777 32 22 457889988765 5789998778889999999999999987763
No 298
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=49.81 E-value=9.6 Score=40.35 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.4
Q ss_pred CccccCCCCCCCChhHHHHHhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
.+|++ +|++||||..+|++|-.
T Consensus 31 ~~~ll-~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 31 DHLLL-YGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHH
Confidence 34777 89999999999999853
No 299
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=49.56 E-value=8.6 Score=36.18 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=20.7
Q ss_pred ccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 189 SPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 189 li~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++ +|.+|+||+++|+.|-.. .+-++|..+
T Consensus 3 ~l-~G~~GsGKST~a~~l~~~---~~~~~i~~D 31 (150)
T cd02021 3 VV-MGVSGSGKSTVGKALAER---LGAPFIDGD 31 (150)
T ss_pred EE-EcCCCCCHHHHHHHHHhh---cCCEEEeCc
Confidence 44 799999999999998654 333454433
No 300
>PRK13948 shikimate kinase; Provisional
Probab=49.37 E-value=9.6 Score=38.22 Aligned_cols=32 Identities=3% Similarity=-0.113 Sum_probs=24.8
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++++ .|..|+||+++++.+- .+.+.+||-.|
T Consensus 11 ~~I~L-iG~~GsGKSTvg~~La---~~lg~~~iD~D 42 (182)
T PRK13948 11 TWVAL-AGFMGTGKSRIGWELS---RALMLHFIDTD 42 (182)
T ss_pred CEEEE-ECCCCCCHHHHHHHHH---HHcCCCEEECC
Confidence 34555 7999999999999984 44566898766
No 301
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=49.29 E-value=71 Score=36.91 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
.++.+.|.+ ..+|+|++|. -.. ..-++++++|+.. ++++|||+ -.-.+.+.+..++++||+-..
T Consensus 230 ~e~a~~L~~--agvdvivvD~a~g~~~~vl~~i~~i~~~--~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVE--AGVDVLVVDTAHGHSEGVLDRVREIKAK--YPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHH--hCCCEEEEECCCCcchhHHHHHHHHHhh--CCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 455555655 6799999997 443 3455788888876 57888887 555678899999999997664
No 302
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.24 E-value=2.9e+02 Score=29.28 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE------eCCCCHHHHHHHHHHHHH
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL------VKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL------~KP~~~eeL~~~L~~alr 114 (687)
++++.+|++. -.+|||...+-.+.+.+.+++.+||+-.. .-|.-+.+++.-+.+.++
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 5778888765 37999999999999999999999986543 235444555555554444
No 303
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=49.23 E-value=9.3 Score=37.02 Aligned_cols=22 Identities=9% Similarity=-0.198 Sum_probs=17.5
Q ss_pred CccccCCCCCCCChhHHHHHhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH 207 (687)
.+++++.|.+|+||.++|+.|-
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3444447999999999998884
No 304
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=49.23 E-value=34 Score=36.19 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=45.2
Q ss_pred HHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCH
Q 005631 32 KILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK 102 (687)
Q Consensus 32 e~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~ 102 (687)
+++.+ +.||+||+=- -|..-|-.-.+.+... .++|.|||+.-.... +.++|+..-+.||.-+.++
T Consensus 53 ~~~~~--~~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 53 KMLKE--WDPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKK-AKDALEEEGFGYIIVKADP 118 (276)
T ss_dssp HHHHH--H--SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS-
T ss_pred HHHHh--hCCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecCc
Confidence 34456 8899999866 7788888888877765 689999999855444 5788999999999887765
No 305
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.17 E-value=14 Score=39.42 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=29.0
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+-+..||+ .|+.||||.++|+|+-.+... .||-|+
T Consensus 187 dpprgvll-ygppg~gktml~kava~~t~a---~firvv 221 (408)
T KOG0727|consen 187 DPPRGVLL-YGPPGTGKTMLAKAVANHTTA---AFIRVV 221 (408)
T ss_pred CCCcceEE-eCCCCCcHHHHHHHHhhccch---heeeec
Confidence 66777999 899999999999999655443 688887
No 306
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.04 E-value=10 Score=44.99 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+.-||. +|+.||||-++|+||=. -+..+|++|-
T Consensus 466 ~ppkGVLl-yGPPGC~KT~lAkalAn---e~~~nFlsvk 500 (693)
T KOG0730|consen 466 SPPKGVLL-YGPPGCGKTLLAKALAN---EAGMNFLSVK 500 (693)
T ss_pred CCCceEEE-ECCCCcchHHHHHHHhh---hhcCCeeecc
Confidence 44445888 89999999999999954 4556999998
No 307
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=48.91 E-value=9.4 Score=46.51 Aligned_cols=46 Identities=7% Similarity=-0.030 Sum_probs=33.1
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+++++.|++||||..+|++|-..-. .+|+.++ |+.+. ..+++.||.
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~---~~~~~i~----~~~~~---~~~~i~g~~ 393 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALN---RKFVRFS----LGGVR---DEAEIRGHR 393 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc---CCeEEEe----CCCcc---cHHHHcCCC
Confidence 3455589999999999999976654 4899988 65442 235566664
No 308
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=48.75 E-value=58 Score=36.31 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.+..+-++.|-+ ...|+|++|+ --. ..=++++++|++. +|++|||. -.-.+.+.+...++.||+...+=
T Consensus 107 ~~~~er~~~L~~--agvD~ivID~a~g~s~~~~~~ik~ik~~--~~~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 107 DDDFERAEALVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKK--FPDVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TCHHHHHHHHHH--TT-SEEEEE-SSTTSHHHHHHHHHHHHH--STTSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHH--cCCCEEEccccCccHHHHHHHHHHHHHh--CCCceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 345666666666 6799999999 432 2346789999987 67787773 34567888999999998887664
No 309
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=48.54 E-value=12 Score=35.69 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=16.6
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
||-+.|.|||||..+|+.|=
T Consensus 55 VlSfHG~tGtGKn~v~~liA 74 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVSRLIA 74 (127)
T ss_pred EEEeecCCCCcHHHHHHHHH
Confidence 77779999999998777663
No 310
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=48.19 E-value=1.4e+02 Score=32.82 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhhC-CCccEEEEcc-C------CCCCH--HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE
Q 005631 26 NGLQAWKILEDLT-NHIDLVLTEV-M------PCLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 26 sg~eALe~L~~~~-~~pDLVLlDl-M------P~mdG--leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY 95 (687)
+.++++++++... ..+|+|-+.. . +...| +++.++|++. -.+|||......+.+.+.++++.|..|+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~---~~ipVi~~G~i~~~~~a~~~l~~g~~D~ 301 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH---ANIATGAVGLITSGAQAEEILQNNRADL 301 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh---cCCcEEEeCCCCCHHHHHHHHHcCCCCh
Confidence 4566555443211 4588887766 4 11234 5788888876 4799999888889999999999998776
Q ss_pred Ee
Q 005631 96 LV 97 (687)
Q Consensus 96 L~ 97 (687)
+.
T Consensus 302 V~ 303 (337)
T PRK13523 302 IF 303 (337)
T ss_pred HH
Confidence 53
No 311
>PRK08233 hypothetical protein; Provisional
Probab=48.03 E-value=9.7 Score=36.70 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=16.9
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| .|.+|+||.++|+.|-.
T Consensus 6 I~I-~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 6 ITI-AAVSGGGKTTLTERLTH 25 (182)
T ss_pred EEE-ECCCCCCHHHHHHHHHh
Confidence 455 89999999999998854
No 312
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=48.01 E-value=11 Score=41.99 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=34.9
Q ss_pred ccccCCCCCCCChhHHHHHhhhcC----cccCCCceecCChhhhhhhhhhhhhhhccCCccccc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNA----EITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVG 246 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S----~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~~~ 246 (687)
.++++.|+.|+||+++|++|-..- ..-.+||.++. -. .++|.++.|.|-+.
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~----~~-----~~~sp~~e~Pl~l~ 133 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK----WN-----GEESPMHEDPLHLF 133 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE----ec-----CCCCCCccCCcccC
Confidence 344448999999999999885443 34467888875 11 15667777777654
No 313
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=47.99 E-value=11 Score=40.80 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.2
Q ss_pred CccccCCCCCCCChhHHHHHhhhc
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
.+|++ +|++||||.++|++|...
T Consensus 52 ~~~ll-~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLL-YGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEE-ECCCCccHHHHHHHHHHH
Confidence 34777 899999999999998654
No 314
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=47.97 E-value=1.3e+02 Score=31.36 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCH--------HHHH-HHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEE
Q 005631 5 LAMLLLLCFEIAVMKVITEATNG--------LQAW-KILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 74 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg--------~eAL-e~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIv 74 (687)
+..++.....+.+++ |..+.+| +.|. +.+++ ..||.|+.=- -|..-|-.-.+.|... .++|.|+
T Consensus 19 ~dlllDErAdRedi~-vrVvgsgaKM~Pe~veaav~~~~e~--~~pDfvi~isPNpaaPGP~kARE~l~~---s~~Paii 92 (277)
T COG1927 19 VDLLLDERADREDIE-VRVVGSGAKMDPECVEAAVTEMLEE--FNPDFVIYISPNPAAPGPKKAREILSD---SDVPAII 92 (277)
T ss_pred HHHHHHhhcccCCce-EEEeccccccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEE
Confidence 344555555667777 5666655 2333 45666 8899999877 8888888888888765 6899999
Q ss_pred EecCCChHHHHHHHhCCCCEEEeCCCCH
Q 005631 75 MSSLDSMGLVFKCLSKGAVDFLVKPIRK 102 (687)
Q Consensus 75 mTa~~d~~~av~Am~aGA~DYL~KP~~~ 102 (687)
++... --.+.+.|+.--..||.-+.++
T Consensus 93 igDaP-g~~vkdeleeqGlGYIivk~Dp 119 (277)
T COG1927 93 IGDAP-GLKVKDELEEQGLGYIIVKADP 119 (277)
T ss_pred ecCCc-cchhHHHHHhcCCeEEEecCCc
Confidence 87654 4456677776667777655443
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=47.93 E-value=8.2 Score=38.41 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=21.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSR 216 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~p 216 (687)
|-| .|.+|+||.+||+.|...=...+.+
T Consensus 2 IgI-~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 2 IGI-AGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred EEE-ECCCCCCHHHHHHHHHHHhCccCcC
Confidence 345 8999999999999997655544433
No 316
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=47.79 E-value=1.4e+02 Score=29.46 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=51.3
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCC-------HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC
Q 005631 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-------GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 90 (687)
Q Consensus 19 ~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~md-------GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a 90 (687)
.+-..+.+.+|+.+..+ ..+|.|++-- .|..+ |++.+.++.+. ..+||+.|-+- +.+.+.++++.
T Consensus 97 ~ig~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~---~~~pv~AlGGI-~~~~i~~l~~~ 169 (180)
T PF02581_consen 97 IIGASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA---SPIPVYALGGI-TPENIPELREA 169 (180)
T ss_dssp EEEEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH---TSSCEEEESS---TTTHHHHHHT
T ss_pred EEEeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHc
Confidence 33457889999666553 5789999987 66443 99999999877 46999999776 46677888899
Q ss_pred CCCEEE
Q 005631 91 GAVDFL 96 (687)
Q Consensus 91 GA~DYL 96 (687)
||..+-
T Consensus 170 Ga~gvA 175 (180)
T PF02581_consen 170 GADGVA 175 (180)
T ss_dssp T-SEEE
T ss_pred CCCEEE
Confidence 998764
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.76 E-value=8.5 Score=42.45 Aligned_cols=45 Identities=7% Similarity=-0.160 Sum_probs=0.0
Q ss_pred ccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHh
Q 005631 160 NGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 160 ~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
...|++|+.-.. ..+......-.-+..+|+ +|+.||||.++|+++
T Consensus 14 ~~~~iiGq~~~~-~~l~~~~~~~~~~h~~L~-~Gp~G~GKTtla~~l 58 (363)
T PRK14961 14 YFRDIIGQKHIV-TAISNGLSLGRIHHAWLL-SGTRGVGKTTIARLL 58 (363)
T ss_pred chhhccChHHHH-HHHHHHHHcCCCCeEEEE-ecCCCCCHHHHHHHH
No 318
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=47.57 E-value=69 Score=37.06 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=49.9
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
...+..+-++.|-+ ...|+|++|. -+- ..=++++++|+.. ++++|||+ -.-.+.+.+..++++||+-.-
T Consensus 222 ~~~~~~~ra~~Lv~--aGVd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 222 INGDVGGKAKALLD--AGVDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred eCccHHHHHHHHHH--hCCCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 33455565566655 6799999999 743 3345788899876 68888877 225678899999999997654
No 319
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.53 E-value=9 Score=39.52 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=34.1
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhh-hccCCcc
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENF-AKRSRDL 243 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ES-elFGh~l 243 (687)
..||| .|++|+||+++|.-+=...-+.+.+-+-|. +..-|+++++. .-||.++
T Consensus 22 s~~lI-~G~pGsGKT~la~~~l~~~~~~ge~~lyvs----~ee~~~~i~~~~~~~g~~~ 75 (237)
T TIGR03877 22 NVVLL-SGGPGTGKSIFSQQFLWNGLQMGEPGIYVA----LEEHPVQVRRNMAQFGWDV 75 (237)
T ss_pred eEEEE-EcCCCCCHHHHHHHHHHHHHHcCCcEEEEE----eeCCHHHHHHHHHHhCCCH
Confidence 34778 899999999988643233234466666666 66667777663 2346554
No 320
>PRK06547 hypothetical protein; Provisional
Probab=47.38 E-value=10 Score=37.61 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=22.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||.++|+.|-.. .+-++|..+
T Consensus 18 i~i-~G~~GsGKTt~a~~l~~~---~~~~~~~~d 47 (172)
T PRK06547 18 VLI-DGRSGSGKTTLAGALAAR---TGFQLVHLD 47 (172)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---hCCCeeccc
Confidence 555 899999999999998654 234556555
No 321
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=47.34 E-value=13 Score=38.65 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=19.3
Q ss_pred CCCCccccCCCCCCCChhHHHHHh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
+.+..+|| +|.+|+||.++|+.+
T Consensus 10 ~~~~~~li-yG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 10 RIPNMYLI-YGKPGTGKTSTIKYL 32 (220)
T ss_pred CCCcEEEE-ECCCCCCHHHHHHhc
Confidence 34556777 899999999999987
No 322
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=47.31 E-value=12 Score=42.20 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=24.9
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
-++| .|+.||||.++|++|=... +-+||.++
T Consensus 150 gllL-~GPPGcGKTllAraiA~el---g~~~i~vs 180 (413)
T PLN00020 150 ILGI-WGGKGQGKSFQCELVFKKM---GIEPIVMS 180 (413)
T ss_pred EEEe-eCCCCCCHHHHHHHHHHHc---CCCeEEEE
Confidence 3666 7999999999999996543 45788888
No 323
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.21 E-value=1.6e+02 Score=27.52 Aligned_cols=68 Identities=7% Similarity=-0.032 Sum_probs=52.5
Q ss_pred CccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC-CCHHHHHHHH
Q 005631 40 HIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP-IRKNELKNLW 109 (687)
Q Consensus 40 ~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP-~~~eeL~~~L 109 (687)
..+||.++. .-|.-|+.+.+.||+.. .-.--|-.++.--.+.+.-..+.|.+.|.++. .+++.....+
T Consensus 19 ~l~lI~i~FP~F~DGRgfS~ArlLR~r~--gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l 89 (110)
T PF06073_consen 19 RLPLIAIDFPKFTDGRGFSQARLLRERY--GYTGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAAL 89 (110)
T ss_pred CCCEEEEECCCcCCchHhHHHHHHHHHc--CCCCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH
Confidence 478888888 67889999999999663 33334667788888999999999999999997 4555554443
No 324
>PRK05541 adenylylsulfate kinase; Provisional
Probab=47.13 E-value=9.4 Score=37.12 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=18.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcCc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
+++ .|.+|+||+++|+.|-..-.
T Consensus 10 I~i-~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 10 IWI-TGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEE-EcCCCCCHHHHHHHHHHHHH
Confidence 444 89999999999999865443
No 325
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=47.00 E-value=11 Score=43.82 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.2
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
..+..||+ +|++||||.++|++|-..
T Consensus 214 ~~p~GILL-yGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 214 KPPKGVLL-YGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCCcceEE-ECCCCCcHHHHHHHHHHh
Confidence 45556888 899999999999998543
No 326
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.98 E-value=10 Score=42.23 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCccc
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLD 244 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~ 244 (687)
-+..||+ .|+.||||-+||.||- .+++.+||-|. -+.|.+ .-||-..+
T Consensus 126 p~kGiLL-~GPpG~GKTmlAKA~A---keaga~fInv~----~s~lt~-----KWfgE~eK 173 (386)
T KOG0737|consen 126 PPKGILL-YGPPGTGKTMLAKAIA---KEAGANFINVS----VSNLTS-----KWFGEAQK 173 (386)
T ss_pred CCcccee-cCCCCchHHHHHHHHH---HHcCCCcceee----ccccch-----hhHHHHHH
Confidence 3445888 7999999999999995 67778999998 555554 45566554
No 327
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=46.97 E-value=80 Score=34.58 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=44.9
Q ss_pred HHHHHHHhhCCCccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 29 QAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 29 eALe~L~~~~~~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+-++.+.+ ..+|+|.+|. -... .-++++++|++. .|.++||+ ..-.+.+.+..++++||+-..+
T Consensus 97 ~~~~~l~e--agv~~I~vd~~~G~~~~~~~~i~~ik~~--~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 97 ERAEALVE--AGVDVIVIDSAHGHSVYVIEMIKFIKKK--YPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHHHHH--CCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 44444444 5799999998 5332 346788888876 45677765 3346678999999999987664
No 328
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=46.87 E-value=1.9e+02 Score=32.65 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=59.7
Q ss_pred HhCCCeEEE---EeCCHHHHHHHHHhhCCCccEEEEcc-C----CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 14 EIAVMKVIT---EATNGLQAWKILEDLTNHIDLVLTEV-M----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 14 e~~G~~~V~---~A~sg~eALe~L~~~~~~pDLVLlDl-M----P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
+..|...+. ...+..+.++.+.+ ...|.|.+.. . ....+++.+++++.. ..+||++.-+- ..+.+.
T Consensus 104 ~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI-~~~n~~ 177 (430)
T PRK07028 104 RKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL-DAETAA 177 (430)
T ss_pred HHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC-CHHHHH
Confidence 345666332 22343444444444 4688887654 3 124567888888865 34888887665 578899
Q ss_pred HHHhCCCCEE-----EeCCCCHHHHHHHHHHHHHH
Q 005631 86 KCLSKGAVDF-----LVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 86 ~Am~aGA~DY-----L~KP~~~eeL~~~L~~alr~ 115 (687)
+++..||+.+ |.+.-++.+....++..++.
T Consensus 178 ~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 178 KAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 9999999855 44555666666555555543
No 329
>PRK09183 transposase/IS protein; Provisional
Probab=46.84 E-value=10 Score=39.91 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=19.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
+...+|+| .|++||||..+|.+|
T Consensus 100 ~~~~~v~l-~Gp~GtGKThLa~al 122 (259)
T PRK09183 100 ERNENIVL-LGPSGVGKTHLAIAL 122 (259)
T ss_pred hcCCeEEE-EeCCCCCHHHHHHHH
Confidence 44556777 799999999999998
No 330
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=46.74 E-value=10 Score=43.28 Aligned_cols=32 Identities=6% Similarity=0.060 Sum_probs=26.5
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..||+ .|++||||.++||+|= ...+-||+.++
T Consensus 48 ~~ILL-iGppG~GKT~lAraLA---~~l~~~fi~vd 79 (441)
T TIGR00390 48 KNILM-IGPTGVGKTEIARRLA---KLANAPFIKVE 79 (441)
T ss_pred ceEEE-ECCCCCCHHHHHHHHH---HHhCCeEEEee
Confidence 34777 7999999999999984 44567999999
No 331
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=46.64 E-value=5.8 Score=40.21 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=31.5
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCccc-CCCceecCChhhhhhhhhhhhhh-hccCCccc
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEIT-GSRRVPVTAAKECQDHEERCENF-AKRSRDLD 244 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~-~~pFV~vn~~~~C~aipe~L~ES-elFGh~l~ 244 (687)
..+|| .|++||||+++|.-+=.+.-+. +.+-+-|. ...-|+.+++. .-||.|++
T Consensus 20 s~~li-~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs----~ee~~~~l~~~~~s~g~d~~ 75 (226)
T PF06745_consen 20 SVVLI-SGPPGSGKTTLALQFLYNGLKNFGEKVLYVS----FEEPPEELIENMKSFGWDLE 75 (226)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHHHHHT--EEEEE----SSS-HHHHHHHHHTTTS-HH
T ss_pred cEEEE-EeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE----ecCCHHHHHHHHHHcCCcHH
Confidence 34778 8999999999987655455444 66655555 44445555543 23466654
No 332
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=46.62 E-value=99 Score=33.35 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=49.2
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY 95 (687)
+...+.+.++|.+.+.. .+|+|++|-|+..+=.++++.|++. .+.+ +|-.++--+.+.+.+-...|++-+
T Consensus 191 IeVEv~tleea~ea~~~---GaDiI~lDn~~~e~l~~~v~~l~~~--~~~~-~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 191 ITVEADTIEQALTVLQA---SPDILQLDKFTPQQLHHLHERLKFF--DHIP-TLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred EEEECCCHHHHHHHHHc---CcCEEEECCCCHHHHHHHHHHHhcc--CCCE-EEEEECCCCHHHHHHHHhcCCCEE
Confidence 45689999999999875 6999999974333334455555433 2343 567788888888888888886654
No 333
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=46.43 E-value=2e+02 Score=28.81 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=47.5
Q ss_pred HHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCc-eEEEEecCCCh
Q 005631 13 FEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNL-PVIMMSSLDSM 81 (687)
Q Consensus 13 Le~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-------leLL~~Ir~~~~~p~i-PVIvmTa~~d~ 81 (687)
++..|......+ .+..+.++.+.. .+|.|+++. -|+.+| ++.+++++.......+ ++|++.+--+.
T Consensus 105 ~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~ 181 (220)
T PRK05581 105 IKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA 181 (220)
T ss_pred HHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH
Confidence 344566543333 244555555533 478888877 676554 3444555443100122 45556565566
Q ss_pred HHHHHHHhCCCCEEEeC
Q 005631 82 GLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~K 98 (687)
+.+.++++.|++.+++-
T Consensus 182 ~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 182 DNIKECAEAGADVFVAG 198 (220)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 88889999999866543
No 334
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=46.39 E-value=39 Score=41.87 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhh-cCCCCceEEEEecCCChHHHHHHHh
Q 005631 28 LQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSH-KTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~-~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
.-.+..+...-..+-+|+.|- |-+.++.=|+..++.. ..++++.||+|++.-+.+.....+.
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~ 545 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFS 545 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhc
Confidence 334444443113345555665 7777775544444432 2257777888877666555544443
No 335
>PRK10536 hypothetical protein; Provisional
Probab=46.37 E-value=10 Score=40.43 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=18.3
Q ss_pred CCCCccccCCCCCCCChhHHHHHhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.....|++ +|++||||.++|.+.=
T Consensus 72 ~~~~lV~i-~G~aGTGKT~La~a~a 95 (262)
T PRK10536 72 ESKQLIFA-TGEAGCGKTWISAAKA 95 (262)
T ss_pred hcCCeEEE-ECCCCCCHHHHHHHHH
Confidence 33345666 8999999999998843
No 336
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=46.35 E-value=13 Score=36.26 Aligned_cols=31 Identities=13% Similarity=-0.083 Sum_probs=22.9
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..||| +|+||+||+++|-++.... .+||+-|
T Consensus 15 ~gvLi-~G~sG~GKStlal~L~~~g----~~lvaDD 45 (149)
T cd01918 15 IGVLI-TGPSGIGKSELALELIKRG----HRLVADD 45 (149)
T ss_pred EEEEE-EcCCCCCHHHHHHHHHHcC----CeEEECC
Confidence 34788 8999999999997766543 4566643
No 337
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=46.31 E-value=1.8e+02 Score=28.78 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhCCCccEEEEc---c--CCC-CCHHHHHHHHHhhcCCCCceE-EEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 27 GLQAWKILEDLTNHIDLVLTE---V--MPC-LSGVALLSKIMSHKTRKNLPV-IMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlD---l--MP~-mdGleLL~~Ir~~~~~p~iPV-IvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
..+.++.+.+ ...|.|=+| - .|. .-|++++++|++. ..+|| +.+..++..+.+..+.+.||+..++-.
T Consensus 13 ~~~~~~~~~~--~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~ 87 (210)
T TIGR01163 13 LGEEVKAVEE--AGADWIHVDVMDGHFVPNLTFGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHP 87 (210)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEcc
Confidence 3455555555 556665555 2 233 2578899999864 34565 324444566788888899999877765
Q ss_pred CCHHHHHHHH
Q 005631 100 IRKNELKNLW 109 (687)
Q Consensus 100 ~~~eeL~~~L 109 (687)
...++....+
T Consensus 88 ~~~~~~~~~~ 97 (210)
T TIGR01163 88 EASEHIHRLL 97 (210)
T ss_pred CCchhHHHHH
Confidence 5445554444
No 338
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=46.19 E-value=9.9 Score=38.23 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=17.6
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|.| .|.+|+||+++|++|-..
T Consensus 9 i~I-~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 9 IGI-GGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 444 899999999999999654
No 339
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.07 E-value=1.2e+02 Score=32.72 Aligned_cols=73 Identities=12% Similarity=-0.021 Sum_probs=49.2
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
+...+.+.+||.+.+.. .+|+|+||-|..-+=-++.+.++.....+. ..|..++--+.+.+.+..+.|++-+-
T Consensus 185 IeVEv~~leea~~a~~a---gaDiI~LDn~~~e~l~~~v~~l~~~~~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 185 VEVEVESLEDALKAAKA---GADIIMLDNMTPEEIREVIEALKREGLRER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEeCCHHHHHHHHHc---CcCEEEECCCCHHHHHHHHHHHHhcCcCCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45689999999999875 789999998422222234444444311123 35677777888899888888876544
No 340
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=46.05 E-value=1.1e+02 Score=31.04 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=53.5
Q ss_pred eCCHHHHHHHHHhhCCCcc-EEEEcc--CCC--CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 24 ATNGLQAWKILEDLTNHID-LVLTEV--MPC--LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pD-LVLlDl--MP~--mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
..+..+..+.+.+ ..+| |+++|+ +.. ..-++++++|++. ..+||++=-+-.+.+.+.+++..||+..++-
T Consensus 29 ~~~~~~~a~~~~~--~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~---~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 29 SDDPVAQAKAWED--QGAKWLHLVDLDGAKAGKPVNLELIEAIVKA---VDIPVQVGGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred cCCHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHH---CCCCEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 4588888888876 5554 777887 322 2457888888776 4789998778889999999999998877754
Q ss_pred C
Q 005631 99 P 99 (687)
Q Consensus 99 P 99 (687)
-
T Consensus 104 ~ 104 (233)
T PRK00748 104 T 104 (233)
T ss_pred c
Confidence 3
No 341
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.87 E-value=2e+02 Score=31.16 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=50.9
Q ss_pred HHHHHHhCC--CeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHH
Q 005631 9 LLLCFEIAV--MKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 86 (687)
Q Consensus 9 l~~lLe~~G--~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~ 86 (687)
+..+-+..+ ..+...+.+.+||.+.+. ..+|+|++|-|.-.+=-++++.++.. .+.++ |..++--+.+.+.+
T Consensus 186 v~~~r~~~~~~~~I~VEv~tleea~eA~~---~GaD~I~LDn~~~e~l~~av~~~~~~--~~~i~-leAsGGIt~~ni~~ 259 (288)
T PRK07428 186 ITRIRQRIPYPLTIEVETETLEQVQEALE---YGADIIMLDNMPVDLMQQAVQLIRQQ--NPRVK-IEASGNITLETIRA 259 (288)
T ss_pred HHHHHHhCCCCCEEEEECCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHHHhc--CCCeE-EEEECCCCHHHHHH
Confidence 333434444 344567899999999986 47999999973211111233334332 35665 44555567888888
Q ss_pred HHhCCCCEEE
Q 005631 87 CLSKGAVDFL 96 (687)
Q Consensus 87 Am~aGA~DYL 96 (687)
....|++-.-
T Consensus 260 ya~tGvD~Is 269 (288)
T PRK07428 260 VAETGVDYIS 269 (288)
T ss_pred HHHcCCCEEE
Confidence 8889987554
No 342
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=45.73 E-value=2.4e+02 Score=30.31 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=58.3
Q ss_pred HHHHHHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-C-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 8 LLLLCFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-M-----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 8 ll~~lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-----P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
.++.+.+..+..+ |..+.+.++|....+ ..+|.|.+.- - .+...++++.++++.- ...+|||.-.+-.+
T Consensus 163 ~i~~l~~~~~~pvivK~v~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~~ 238 (299)
T cd02809 163 DLAWLRSQWKGPLILKGILTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHhcCCCEEEeecCCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCCC
Confidence 3444444433332 344567777766554 5788877744 1 1335678888887652 13699999999999
Q ss_pred hHHHHHHHhCCCCEEEeC
Q 005631 81 MGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~K 98 (687)
...+++++..||+....=
T Consensus 239 ~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 239 GTDVLKALALGADAVLIG 256 (299)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999987653
No 343
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=45.57 E-value=11 Score=42.80 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=21.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
.||| .|+-||||+++||+|+..=+
T Consensus 40 gvLI-~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 40 GALI-AGEKGTAKSTLARALADLLP 63 (423)
T ss_pred eeEE-ecCCCccHHHHHHHHHHhCC
Confidence 4899 89999999999999997766
No 344
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=45.42 E-value=2.7e+02 Score=29.26 Aligned_cols=69 Identities=10% Similarity=-0.018 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCeEEEE------eCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 7 MLLLLCFEIAVMKVITE------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~------A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..++..|.++|.. ..+....+..++. ..||+||+-.. ..++..+++++++.. -..++|..++..+
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~-~~~~~~~~~~~~~~G--~~~~~~~~~~~~~ 229 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY-PETGSGILRSAYEQG--LFDKFLLTDGMKS 229 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc-cchHHHHHHHHHHcC--CCCceEeeccccC
Confidence 34556677778875542 2466677777777 78998886442 237778888888763 3556665544334
No 345
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=45.34 E-value=1.3e+02 Score=33.16 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=60.5
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccC--CCCCH--------HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVM--PCLSG--------VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlM--P~mdG--------leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.+...|..++..+.+..+|.+..+. ..|.|+..-. .+-.| +.|+.+|+..- ..+|||.--+-.+.
T Consensus 122 ~~~~~g~~v~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg 196 (336)
T COG2070 122 RLKAAGIKVIHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADG 196 (336)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccCh
Confidence 4455777778889999999888664 6788877542 22223 78999998872 33999999999999
Q ss_pred HHHHHHHhCCCCE
Q 005631 82 GLVFKCLSKGAVD 94 (687)
Q Consensus 82 ~~av~Am~aGA~D 94 (687)
..+..|+.+||..
T Consensus 197 ~~i~AAlalGA~g 209 (336)
T COG2070 197 RGIAAALALGADG 209 (336)
T ss_pred HHHHHHHHhccHH
Confidence 9999999999976
No 346
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.27 E-value=1e+02 Score=30.43 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCC--CCHHHHHHHHHhhcCCCCceEEEEecCCCh--HHHHHHHhCCCCEEEeCC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIMMSSLDSM--GLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~--mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~--~~av~Am~aGA~DYL~KP 99 (687)
.+.++++++++.....+++ +.+ +|- -.|+++++.|++. .+++||++..-..+. ..+..+.++||+-.++-.
T Consensus 10 ~~~~~~~~~~~~l~~~i~~--ieig~~~~~~~g~~~i~~i~~~--~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 10 LDLEEALELAKKVPDGVDI--IEAGTPLIKSEGMEAVRALREA--FPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred CCHHHHHHHHHHhhhcCCE--EEcCCHHHHHhCHHHHHHHHHH--CCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 4677888877663223454 444 442 3578999999876 367888764222222 346778899998776544
Q ss_pred C
Q 005631 100 I 100 (687)
Q Consensus 100 ~ 100 (687)
.
T Consensus 86 ~ 86 (202)
T cd04726 86 A 86 (202)
T ss_pred e
Confidence 3
No 347
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.23 E-value=2.1e+02 Score=31.15 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=47.9
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY 95 (687)
+...+.+.+||.+.+.. .+|+|+||-|.--+=-+.++.++.. .+.+ +|..++--+.+.+.+-...|++-+
T Consensus 202 IeVEv~tl~ea~eal~~---gaDiI~LDnm~~e~vk~av~~~~~~--~~~v-~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE---GAELVLLDNFPVWQTQEAVQRRDAR--APTV-LLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEEcCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHhcc--CCCE-EEEEECCCCHHHHHHHHhcCCCEE
Confidence 45689999999999864 7999999974321122233333333 2443 577788888888888888887654
No 348
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=45.23 E-value=83 Score=32.20 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=55.6
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
..|+..+.-.|....+.+++++.++.. ..-.+=++++ |-.-+.+++++.+++. +|++- |=.-.--+.+.+.+|++
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al-~~gGi~~iEiT~~t~~a~~~I~~l~~~--~p~~~-vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEAL-IEGGIRAIEITLRTPNALEAIEALRKE--FPDLL-VGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHH-HHTT--EEEEETTSTTHHHHHHHHHHH--HTTSE-EEEES--SHHHHHHHHH
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEecCCccHHHHHHHHHHH--CCCCe-eEEEeccCHHHHHHHHH
Confidence 345555655566677777777766531 1123446788 8777899999999987 46643 33333457889999999
Q ss_pred CCCCEEEeCC-CCHHHH
Q 005631 90 KGAVDFLVKP-IRKNEL 105 (687)
Q Consensus 90 aGA~DYL~KP-~~~eeL 105 (687)
+||. ||+-| ++++-+
T Consensus 79 aGA~-FivSP~~~~~v~ 94 (196)
T PF01081_consen 79 AGAQ-FIVSPGFDPEVI 94 (196)
T ss_dssp HT-S-EEEESS--HHHH
T ss_pred cCCC-EEECCCCCHHHH
Confidence 9996 66667 444433
No 349
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=45.04 E-value=1.3e+02 Score=30.79 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=53.7
Q ss_pred eCCHHHHHHHHHhhCCCcc-EEEEcc-CC---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 24 ATNGLQAWKILEDLTNHID-LVLTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pD-LVLlDl-MP---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
..+..++.+.+.. ..++ |+++|+ -- ...-++++++|.+. ..+||++=.+-.+.+.+.+++..|+...+.-
T Consensus 29 ~~dp~~~a~~~~~--~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNA--KGADELIVLDIDASKRGREPLFELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEeCCCcccCCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4588888888876 6665 889999 42 23456788888776 4789988888888999999999998877654
No 350
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=44.97 E-value=9.9 Score=41.22 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=28.1
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcC-cccC-----CCceecCChhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNA-EITG-----SRRVPVTAAKECQDH 229 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S-~R~~-----~pFV~vn~~~~C~ai 229 (687)
.+..++| .|++||||..+++++-..= .... -++|.|| |...
T Consensus 39 ~~~~i~I-~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~ 85 (365)
T TIGR02928 39 RPSNVFI-YGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQIL 85 (365)
T ss_pred CCCcEEE-ECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCC
Confidence 3445788 8999999999999885421 1111 3577788 7654
No 351
>PRK06696 uridine kinase; Validated
Probab=44.97 E-value=11 Score=38.37 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.5
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|.| .|.+|+||+++|+.|=..
T Consensus 25 I~I-~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 25 VAI-DGITASGKTTFADELAEE 45 (223)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 556 999999999999988543
No 352
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=44.94 E-value=14 Score=37.85 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=32.1
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhh-hhccCCccc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCEN-FAKRSRDLD 244 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~E-SelFGh~l~ 244 (687)
.+++ .|++||||.++|..+=..--+.+.+-+-+. ...-|+.+++ .+-||.++.
T Consensus 27 ~~~i-~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~----~e~~~~~~~~~~~~~g~~~~ 80 (234)
T PRK06067 27 LILI-EGDHGTGKSVLSQQFVYGALKQGKKVYVIT----TENTSKSYLKQMESVKIDIS 80 (234)
T ss_pred EEEE-ECCCCCChHHHHHHHHHHHHhCCCEEEEEE----cCCCHHHHHHHHHHCCCChh
Confidence 3777 799999999999887322222344555555 4444555544 244565553
No 353
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=44.77 E-value=14 Score=42.27 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=26.7
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+|+ .|++|+||.++|++|-.. .+.||+.++
T Consensus 51 ~~ILl-iGp~G~GKT~LAr~LAk~---l~~~fi~vD 82 (443)
T PRK05201 51 KNILM-IGPTGVGKTEIARRLAKL---ANAPFIKVE 82 (443)
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHH---hCChheeec
Confidence 34777 799999999999999554 467999999
No 354
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=44.58 E-value=2.3e+02 Score=33.15 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=60.6
Q ss_pred HHHHHHHhC-CCeEE-EEeCCHHHHHHHHHhhCCCccEEEEc--------------c-CCCCCHHHHHHHHHhhcCCCCc
Q 005631 8 LLLLCFEIA-VMKVI-TEATNGLQAWKILEDLTNHIDLVLTE--------------V-MPCLSGVALLSKIMSHKTRKNL 70 (687)
Q Consensus 8 ll~~lLe~~-G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlD--------------l-MP~mdGleLL~~Ir~~~~~p~i 70 (687)
+++.+-+.. +..++ .-+.+.++|..+++. ..|.|.+- + .|....+.++..+.+. ..+
T Consensus 279 ~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~---~~v 352 (505)
T PLN02274 279 MIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ---HGV 352 (505)
T ss_pred HHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh---cCC
Confidence 344444433 34433 358899999888764 78888653 2 2444566667777654 469
Q ss_pred eEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 71 PVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 71 PVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
|||.-.+-.....+++|+.+||+..+.=
T Consensus 353 pVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 353 PVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999999987763
No 355
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=44.57 E-value=13 Score=43.27 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=23.5
Q ss_pred cchhhhhhhcCCCCccccCCCCCCCChhHHHHHh
Q 005631 173 SSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 173 S~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
..|.+..+.-.+...+|+++|++|+||.+..+++
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~L 65 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVL 65 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHHHHH
Confidence 3455443332344458888999999999988876
No 356
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.52 E-value=64 Score=37.35 Aligned_cols=67 Identities=9% Similarity=0.061 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
.+..+.++.|.. ...|+|++|. =....-++++++||+. +|+++||. -.-.+.+.+..++++||+-.-
T Consensus 226 ~~~~~~a~~Lv~--aGvd~i~~D~a~~~~~~~~~~i~~ik~~--~p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 226 GDVAAKARALLE--AGVDVLVVDTAHGHQEKMLEALRAVRAL--DPGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hhHHHHHHHHHH--hCCCEEEEeccCCccHHHHHHHHHHHHH--CCCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 344555555555 6799999999 4566677899999986 57766553 234567889999999988754
No 357
>PRK00300 gmk guanylate kinase; Provisional
Probab=44.43 E-value=11 Score=37.48 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=18.8
Q ss_pred cccCCCCCCCChhHHHHHhhhcCc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
+.| .|+||+||.++|+.|-..-+
T Consensus 8 i~i-~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 8 IVL-SGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEE-ECCCCCCHHHHHHHHHhhCc
Confidence 444 79999999999999976643
No 358
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.40 E-value=1.4e+02 Score=31.53 Aligned_cols=80 Identities=6% Similarity=-0.008 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 3 ILLAMLLLLCFEIAVMKVITEATNGLQA-WKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 3 l~~r~ll~~lLe~~G~~~V~~A~sg~eA-Le~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
++++..+...|+..|+.++....+.... .+.++. ..++++.+.- -+..|--++++.|++. .+.+||++.+.
T Consensus 17 v~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~--~g~~v~~~~~~~~~~~d~~~~~~~l~~~----~~d~vV~D~y~ 90 (279)
T TIGR03590 17 VMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS--AGFPVYELPDESSRYDDALELINLLEEE----KFDILIVDHYG 90 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH--cCCeEEEecCCCchhhhHHHHHHHHHhc----CCCEEEEcCCC
Confidence 4667777777777787754444433332 455555 5566555432 1112233455555543 23456666654
Q ss_pred ChHHHHHHH
Q 005631 80 SMGLVFKCL 88 (687)
Q Consensus 80 d~~~av~Am 88 (687)
-.....+.+
T Consensus 91 ~~~~~~~~~ 99 (279)
T TIGR03590 91 LDADWEKLI 99 (279)
T ss_pred CCHHHHHHH
Confidence 333333334
No 359
>PRK13947 shikimate kinase; Provisional
Probab=44.32 E-value=12 Score=35.86 Aligned_cols=31 Identities=3% Similarity=-0.055 Sum_probs=24.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+|++ .|..|+||.++|+.+- .+.+-+||..+
T Consensus 3 ~I~l-~G~~GsGKst~a~~La---~~lg~~~id~d 33 (171)
T PRK13947 3 NIVL-IGFMGTGKTTVGKRVA---TTLSFGFIDTD 33 (171)
T ss_pred eEEE-EcCCCCCHHHHHHHHH---HHhCCCEEECc
Confidence 3566 7999999999999984 55566888877
No 360
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=44.11 E-value=12 Score=35.61 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=16.4
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|.| +|++|+||.++|+.|-
T Consensus 3 I~i-~G~~GSGKstia~~la 21 (171)
T TIGR02173 3 ITI-SGPPGSGKTTVAKILA 21 (171)
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 344 8999999999999984
No 361
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.08 E-value=1.3e+02 Score=31.00 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=53.2
Q ss_pred eCCHHHHHHHHHhhCCCcc-EEEEcc-CCC-C--CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 24 ATNGLQAWKILEDLTNHID-LVLTEV-MPC-L--SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pD-LVLlDl-MP~-m--dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
..+..+..+.+.+ ..+| |+++|+ --+ . .-++++++|++. ..+||++--+-.+.+.+.+++..|++..++=
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 4478888888877 5676 888888 421 1 235788888876 4699999999999999999999997766553
No 362
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.95 E-value=2.1e+02 Score=29.75 Aligned_cols=86 Identities=14% Similarity=-0.015 Sum_probs=54.2
Q ss_pred HHHHHHhCCCeEEEEeCC--HHHHHHHHHhhCCCccEEEEcc-CCCCC------HHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 9 LLLCFEIAVMKVITEATN--GLQAWKILEDLTNHIDLVLTEV-MPCLS------GVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~s--g~eALe~L~~~~~~pDLVLlDl-MP~md------GleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
+...++..|...+..+.. ..+.++.+.. ....++++ . +|+.. -.+.++++|+. .+..||++=.+-.
T Consensus 121 ~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~--~~~~~i~v~gGI~ 195 (244)
T PRK13125 121 YVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNL--VGNKYLVVGFGLD 195 (244)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHh--cCCCCEEEeCCcC
Confidence 334456778775444443 2445555544 45667777 5 77632 23466677765 2456665444444
Q ss_pred ChHHHHHHHhCCCCEEEeCC
Q 005631 80 SMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP 99 (687)
+.+.+.+++++||+.+++=-
T Consensus 196 ~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 196 SPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CHHHHHHHHHcCCCEEEECH
Confidence 78899999999999999864
No 363
>CHL00206 ycf2 Ycf2; Provisional
Probab=43.91 E-value=17 Score=48.39 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=29.3
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+..||+ .|+.||||.++|+||=..+. -|||.|.
T Consensus 1628 ~pPKGILL-iGPPGTGKTlLAKALA~es~---VPFIsIS 1662 (2281)
T CHL00206 1628 SPSRGILV-IGSIGTGRSYLVKYLATNSY---VPFITVF 1662 (2281)
T ss_pred CCCCceEE-ECCCCCCHHHHHHHHHHhcC---CceEEEE
Confidence 34445888 79999999999999977765 5999998
No 364
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.66 E-value=90 Score=32.42 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=49.5
Q ss_pred eCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
-.+..++++.+.+ ..-.+|++|+ -- -+.|++ .|.+. .+++|||.--+-.+.+.+.++.+.|++..|+
T Consensus 142 ~~~~~~~~~~~~~--~~~~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 142 SIKVEDAYEMLKN--YVNRFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CCCHHHHHHHHHH--HhCEEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3445677777776 3346999999 43 457877 33322 2579999998899999999999999998776
No 365
>PF05729 NACHT: NACHT domain
Probab=43.54 E-value=2.4e+02 Score=26.07 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCccEEEEcc---CCCCCHH-------HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Q 005631 39 NHIDLVLTEV---MPCLSGV-------ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 108 (687)
Q Consensus 39 ~~pDLVLlDl---MP~mdGl-------eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~ 108 (687)
...-+||+|- +....+. +++..+-.....+.+.||+.+....... ....-....-|-+.|++.+++...
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-LRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-HHHhcCCCcEEEECCCCHHHHHHH
Confidence 4455777776 4443332 3444444332357888887776555444 333334456788999999999998
Q ss_pred HHHHHH
Q 005631 109 WQHVWR 114 (687)
Q Consensus 109 L~~alr 114 (687)
+++.++
T Consensus 159 ~~~~f~ 164 (166)
T PF05729_consen 159 LRKYFS 164 (166)
T ss_pred HHHHhh
Confidence 887764
No 366
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=43.50 E-value=2.1e+02 Score=30.95 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=48.0
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY 95 (687)
+...+.+.++|.+.++. .+|+|++|-|+..+=-++.+.+++. .+.+ +|-.++--+.+.+.+-...|++-+
T Consensus 192 IeVEv~tleqa~ea~~a---gaDiI~LDn~~~e~l~~av~~~~~~--~~~~-~leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 192 IVVEADTPKEAIAALRA---QPDVLQLDKFSPQQATEIAQIAPSL--APHC-TLSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred EEEECCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhhcc--CCCe-EEEEECCCCHHHHHHHHhcCCCEE
Confidence 45689999999999975 6999999984332223344444322 2333 566777778888888888886554
No 367
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.48 E-value=1.3e+02 Score=31.47 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhCCCc-cEEEEcc-CCC-CCH--HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHI-DLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~p-DLVLlDl-MP~-mdG--leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.+.+ ..+ .+|++|+ --+ +.| +++++.+++. +. |+|.--+-.+.+.+.++.+.|++..|+
T Consensus 147 ~~~e~~~~l~~--~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~-~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNE--LELLGIIFTYISNEGTTKGIDYNVKDYARLI---RG-LKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHh--cCCCEEEEecccccccCcCcCHHHHHHHHhC---CC-CEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 55677777766 444 7999999 443 244 5788888754 33 466655567888998988999998876
No 368
>PRK06893 DNA replication initiation factor; Validated
Probab=43.46 E-value=12 Score=38.56 Aligned_cols=21 Identities=5% Similarity=-0.213 Sum_probs=16.9
Q ss_pred CccccCCCCCCCChhHHHHHh
Q 005631 186 RHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraI 206 (687)
.|.+++.|++||||..+|+||
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai 59 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAV 59 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 354334799999999999998
No 369
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=43.28 E-value=1.5e+02 Score=34.28 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=56.9
Q ss_pred EEeCCHHHHHHHHHhhCCCccEEEEcc-CCCC-------CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCC
Q 005631 22 TEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 93 (687)
Q Consensus 22 ~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~m-------dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~ 93 (687)
..+.+.+++.+... ..+|.|.+-- .|.. -|++.++++... ..+|||.+-+- +.+.+.+++..|++
T Consensus 395 ~S~h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 395 VSCKTPEQAEQAWK---DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA---SKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred EeCCCHHHHHHHhh---cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc---CCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 45677777766544 4799988655 4432 278999998765 57999988554 57888999999988
Q ss_pred ---EE-----EeCCCCHHHHHHHHHHHHH
Q 005631 94 ---DF-----LVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 94 ---DY-----L~KP~~~eeL~~~L~~alr 114 (687)
.+ |...-++.+....+.+++.
T Consensus 468 ~~~gvav~~~i~~~~d~~~~~~~~~~~~~ 496 (502)
T PLN02898 468 NLKGVAVVSALFDQEDVLKATRKLHAILT 496 (502)
T ss_pred cCceEEEEeHHhcCCCHHHHHHHHHHHHH
Confidence 33 3334455544444444443
No 370
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=43.27 E-value=12 Score=37.98 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=30.5
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhh-hhccCCcc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCEN-FAKRSRDL 243 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~E-SelFGh~l 243 (687)
.++| .|++|+||+++|..+=.+--+.+.+-+-+. ....++.+.+ ..-||.++
T Consensus 22 ~~~i-~G~~G~GKT~l~~~~~~~~~~~g~~~~~is----~e~~~~~i~~~~~~~g~~~ 74 (229)
T TIGR03881 22 FVAV-TGEPGTGKTIFCLHFAYKGLRDGDPVIYVT----TEESRESIIRQAAQFGMDF 74 (229)
T ss_pred EEEE-ECCCCCChHHHHHHHHHHHHhcCCeEEEEE----ccCCHHHHHHHHHHhCCCH
Confidence 4677 799999999998753222223455656666 4444454443 23345544
No 371
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.09 E-value=2.5e+02 Score=29.61 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCC-CceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 55 VALLSKIMSHKTRK-NLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 55 leLL~~Ir~~~~~p-~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
++++++|++. .+ ++|||...+-.+.+.+.+++.+||+-..
T Consensus 230 ~~~v~~i~~~--~~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAAR--LQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 5667777765 33 7999999999999999999999977543
No 372
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=43.03 E-value=13 Score=34.79 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=22.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++ .|.+|+||.++|+.| +...+-+|+..+
T Consensus 2 i~l-~G~~GsGKstla~~l---a~~l~~~~~~~d 31 (154)
T cd00464 2 IVL-IGMMGAGKTTVGRLL---AKALGLPFVDLD 31 (154)
T ss_pred EEE-EcCCCCCHHHHHHHH---HHHhCCCEEEch
Confidence 455 799999999999998 334455677655
No 373
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=43.00 E-value=13 Score=37.25 Aligned_cols=30 Identities=17% Similarity=0.008 Sum_probs=23.2
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.||| +|+||.||+.+|=.+... +..||+-|
T Consensus 20 GVLi-~G~SG~GKS~lAl~Li~r----Gh~lvaDD 49 (171)
T PF07475_consen 20 GVLI-TGPSGIGKSELALELIKR----GHRLVADD 49 (171)
T ss_dssp EEEE-EESTTSSHHHHHHHHHHT----T-EEEESS
T ss_pred EEEE-ECCCCCCHHHHHHHHHHC----CCeEEeCC
Confidence 4888 899999999988887754 44788844
No 374
>PRK00625 shikimate kinase; Provisional
Probab=42.89 E-value=12 Score=37.17 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=24.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ .|..|+||.++|+.+ +++-+-+||.++
T Consensus 3 I~L-iG~pGsGKTT~~k~L---a~~l~~~~id~D 32 (173)
T PRK00625 3 IFL-CGLPTVGKTSFGKAL---AKFLSLPFFDTD 32 (173)
T ss_pred EEE-ECCCCCCHHHHHHHH---HHHhCCCEEEhh
Confidence 556 799999999999998 455567888877
No 375
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=42.86 E-value=1.7e+02 Score=28.85 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=48.8
Q ss_pred HhCCCeEEEEeC--CHHHHHHHHHhhCCCccEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCceEEEEecCCCh
Q 005631 14 EIAVMKVITEAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMMSSLDSM 81 (687)
Q Consensus 14 e~~G~~~V~~A~--sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-------leLL~~Ir~~~--~~p~iPVIvmTa~~d~ 81 (687)
+..+..+...+. +..+.++.+.. .+|.|+++. .|+.+| ++.++++++.- ..+.+||++.-+-. .
T Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~ 177 (211)
T cd00429 102 KELGMKAGVALNPGTPVEVLEPYLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-L 177 (211)
T ss_pred HHCCCeEEEEecCCCCHHHHHHHHh---hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-H
Confidence 344555333332 23454554443 389999887 776544 44555555441 01247876665544 5
Q ss_pred HHHHHHHhCCCCEEEeC
Q 005631 82 GLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~K 98 (687)
+.+.++++.||+.+++=
T Consensus 178 env~~~~~~gad~iivg 194 (211)
T cd00429 178 ETIPLLAEAGADVLVAG 194 (211)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 88999999999988764
No 376
>PRK08356 hypothetical protein; Provisional
Probab=42.83 E-value=13 Score=36.98 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=17.1
Q ss_pred ccccCCCCCCCChhHHHHHh
Q 005631 187 HMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraI 206 (687)
.+++++|.+|+||.++|+.|
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 44445899999999999999
No 377
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=42.83 E-value=12 Score=36.30 Aligned_cols=19 Identities=11% Similarity=-0.221 Sum_probs=16.0
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|++ .|.+|+||.++|+.|-
T Consensus 2 i~i-~G~pGsGKst~a~~la 20 (183)
T TIGR01359 2 VFV-LGGPGSGKGTQCAKIV 20 (183)
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 345 7999999999999884
No 378
>PHA00729 NTP-binding motif containing protein
Probab=42.82 E-value=13 Score=38.90 Aligned_cols=21 Identities=10% Similarity=-0.146 Sum_probs=17.7
Q ss_pred ccccCCCCCCCChhHHHHHhhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~ 208 (687)
.++| +|.+||||+.+|.+|-.
T Consensus 19 nIlI-tG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 19 SAVI-FGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEE-ECCCCCCHHHHHHHHHH
Confidence 4777 89999999999998743
No 379
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.81 E-value=10 Score=40.37 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=20.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
....|||+ .|++||||.++.+..=
T Consensus 31 ~~~~pvLl-~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 31 SNGRPVLL-VGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HCTEEEEE-ESSTTSSHHHHHHHHH
T ss_pred HcCCcEEE-ECCCCCchhHHHHhhh
Confidence 67889999 8999999999987753
No 380
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=42.64 E-value=1.9e+02 Score=34.63 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=69.6
Q ss_pred HHHHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-C-CCC----CHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 10 LLCFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 10 ~~lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-P~m----dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
-..|+..||.+ +.-+.++-..+..|.. -+||.|=+|. + -+. ....+++.|...-..-.+. +|.++-.+.+
T Consensus 684 l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-via~gVe~~~ 760 (799)
T PRK11359 684 IQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT-VVAEGVETKE 760 (799)
T ss_pred HHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-EEEEcCCCHH
Confidence 34578889984 2335678888899988 7899999998 4 332 2344566655432113444 4567888888
Q ss_pred HHHHHHhCCCC----EEEeCCCCHHHHHHHHHH
Q 005631 83 LVFKCLSKGAV----DFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 83 ~av~Am~aGA~----DYL~KP~~~eeL~~~L~~ 111 (687)
....+.+.|++ .|+.||...++|...|+.
T Consensus 761 ~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 761 QFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 99999999986 578899999999886543
No 381
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.46 E-value=1.6e+02 Score=27.00 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
...++.+++..|+.+-..+.+..+.-+.+.. ..+|+||+-- ... =.+..|++.-...++||.+|..
T Consensus 18 a~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~--~~~DvIll~P--Qi~--~~~~~i~~~~~~~~ipv~~I~~-------- 83 (104)
T PRK09590 18 AKKTTEYLKEQGKDIEVDAITATEGEKAIAA--AEYDLYLVSP--QTK--MYFKQFEEAGAKVGKPVVQIPP-------- 83 (104)
T ss_pred HHHHHHHHHHCCCceEEEEecHHHHHHhhcc--CCCCEEEECh--HHH--HHHHHHHHHhhhcCCCEEEeCH--------
Confidence 3445788888999854556666666555544 5799999852 221 1233444331125799998864
Q ss_pred HHHhCCCCEEEeCCCCHHHHHHHHHH
Q 005631 86 KCLSKGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 86 ~Am~aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
.+|-.-|.+.+++...|..
T Consensus 84 -------~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 84 -------QAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred -------HHcCCCccCHHHHHHHHHh
Confidence 3476667788877766653
No 382
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=42.46 E-value=12 Score=39.56 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=20.8
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++++.|.+|+||+++|+.|=..-+ .|+.++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~----~~~~l~ 33 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP----KAVNVN 33 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC----CCEEEe
Confidence 344489999999999999843321 355555
No 383
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=42.37 E-value=13 Score=35.79 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.2
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++++ .|.+|+||.++|+.+- ++.+-||+..+
T Consensus 4 ~i~~-~G~~GsGKst~~~~la---~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFL-VGARGCGKTTVGMALA---QALGYRFVDTD 34 (171)
T ss_pred eEEE-ECCCCCCHHHHHHHHH---HHhCCCEEEcc
Confidence 3555 7999999999999985 44456888766
No 384
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=42.08 E-value=1.4e+02 Score=31.03 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=53.8
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 94 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D 94 (687)
.+.+.+|+++..+. .+|.|.+-- .|. --|++.++++++. ..+|+|.|-+ -+.+.+.+.+..||+.
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~---~~iP~vAIGG-i~~~nv~~v~~~Ga~g 182 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIREL---VNIPVVAIGG-INLENVPEVLEAGADG 182 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh---CCCCEEEEcC-CCHHHHHHHHHhCCCe
Confidence 56688888888764 499999876 653 4599999999987 4599999876 4678999999999987
Q ss_pred EEe
Q 005631 95 FLV 97 (687)
Q Consensus 95 YL~ 97 (687)
.-+
T Consensus 183 VAv 185 (211)
T COG0352 183 VAV 185 (211)
T ss_pred EEe
Confidence 543
No 385
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=41.98 E-value=14 Score=34.20 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=20.9
Q ss_pred ccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 189 SPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 189 li~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.| .|++|+||.++|+.| +++.+-|||..+
T Consensus 3 ~i-~G~~GsGKst~a~~l---a~~~~~~~~~~~ 31 (147)
T cd02020 3 AI-DGPAGSGKSTVAKLL---AKKLGLPYLDTG 31 (147)
T ss_pred EE-ECCCCCCHHHHHHHH---HHHhCCceeccc
Confidence 44 799999999999987 344455665543
No 386
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.96 E-value=2.6e+02 Score=28.81 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=58.9
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhhC-CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~~-~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
.|...+.-.|....+.+++++.++..- ..+. ++++ |-.-+.++.+++|++. ++++.|-. -.--+.+.+.++++
T Consensus 4 ~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~--~~~~~vGA-GTVl~~~~a~~a~~ 78 (204)
T TIGR01182 4 LLREAKIVPVIRIDDVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE--VPDALIGA-GTVLNPEQLRQAVD 78 (204)
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH--CCCCEEEE-EeCCCHHHHHHHHH
Confidence 445566666778889999888765321 3455 4455 5556689999999876 56543322 22356889999999
Q ss_pred CCCCEEEeCCCCHHHHH
Q 005631 90 KGAVDFLVKPIRKNELK 106 (687)
Q Consensus 90 aGA~DYL~KP~~~eeL~ 106 (687)
+||. ||+-|.-..++.
T Consensus 79 aGA~-FivsP~~~~~v~ 94 (204)
T TIGR01182 79 AGAQ-FIVSPGLTPELA 94 (204)
T ss_pred cCCC-EEECCCCCHHHH
Confidence 9985 777775444443
No 387
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=41.93 E-value=14 Score=37.02 Aligned_cols=28 Identities=11% Similarity=-0.101 Sum_probs=22.0
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||.++|+.|... -+++.++
T Consensus 3 iii-lG~pGaGK~T~A~~La~~-----~~i~hls 30 (178)
T COG0563 3 ILI-LGPPGAGKSTLAKKLAKK-----LGLPHLD 30 (178)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH-----hCCcEEc
Confidence 455 599999999999999766 3556665
No 388
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=41.73 E-value=11 Score=36.75 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=34.0
Q ss_pred CCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 193 QLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 193 GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
|.+|+||.+++|+|+...-+..+.-. |.-...+-.-|.+.+|.-.|-|.|
T Consensus 8 G~~g~GKTTL~q~L~~~~~~~~KTq~-i~~~~~~IDTPGEyiE~~~~y~aL 57 (143)
T PF10662_consen 8 GPSGSGKTTLAQALNGEEIRYKKTQA-IEYYDNTIDTPGEYIENPRFYHAL 57 (143)
T ss_pred CCCCCCHHHHHHHHcCCCCCcCccce-eEecccEEECChhheeCHHHHHHH
Confidence 99999999999999987665544421 111223555677777776666666
No 389
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.69 E-value=1.5e+02 Score=30.37 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-CC---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe---
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--- 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-MP---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~--- 97 (687)
+..+..+.+.. ..++ |+++|+ .- ..-.+++++++.+. -.+|||+.-+-.+.+.+.+.+..||+.+++
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 55666666666 5666 555565 21 22457889999876 479999999999899999999999998765
Q ss_pred ---CCCCHHHHHH
Q 005631 98 ---KPIRKNELKN 107 (687)
Q Consensus 98 ---KP~~~eeL~~ 107 (687)
.|+.+++++.
T Consensus 225 ~~~~~~~~~~~~~ 237 (241)
T PRK13585 225 LYKGKFTLEEAIE 237 (241)
T ss_pred HhcCCcCHHHHHH
Confidence 4555555543
No 390
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=41.61 E-value=20 Score=35.25 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=28.7
Q ss_pred cccCCCCCCCChh-HHHHHhhhc--------CcccCCCceecCChhhhhhhhhhhhh
Q 005631 188 MSPSDQLAECPDS-TCAQVIHSN--------AEITGSRRVPVTAAKECQDHEERCEN 235 (687)
Q Consensus 188 Vli~~GEsGTGKE-l~AraIH~~--------S~R~~~pFV~vn~~~~C~aipe~L~E 235 (687)
.+| .|+.||||. +++.+|+.. ..+...-.|.-.+..-+..+=+.|.+
T Consensus 20 ~~i-~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLI-QGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEE-E-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred EEE-ECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 566 799999999 577777777 34444444443444455555555555
No 391
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=41.59 E-value=15 Score=35.76 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.6
Q ss_pred CCCCCChhHHHHHhhhc
Q 005631 193 QLAECPDSTCAQVIHSN 209 (687)
Q Consensus 193 GEsGTGKEl~AraIH~~ 209 (687)
|.+|+||+++|++|-..
T Consensus 2 G~sGsGKSTla~~la~~ 18 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQ 18 (163)
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 89999999999987433
No 392
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=41.57 E-value=1.9e+02 Score=34.78 Aligned_cols=99 Identities=6% Similarity=-0.048 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc---CCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 5 LAMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl---MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
+......++.-.||+++.. +.+.+++.+.+.. ...+|+++-. -..-.+-++++.||+.. ..+|+|.+..
T Consensus 511 Ra~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~--sga~i~viCssD~~Y~~~a~~~~~al~~ag----~~~v~lAG~p 584 (619)
T TIGR00642 511 REGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK--AGAQVAVLCSSDKVYAQQGLEVAKALKAAG----AKALYLAGAF 584 (619)
T ss_pred HHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh--cCCCEEEEeCCCcchHHHHHHHHHHHHhCC----CCEEEEeCCC
Confidence 3455677888899985422 3567788888877 6777776644 23345778899998762 2477788776
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
.. ..+...+|+++||.-=.+.-+++..+++
T Consensus 585 ~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 585 KE--FGDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred cc--hhhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 43 4446678999999998887666555544
No 393
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=41.52 E-value=1.3e+02 Score=29.31 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHHhhCCCccEEEEcc---CCC------CCH-HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH-hCCCCEEE--e
Q 005631 31 WKILEDLTNHIDLVLTEV---MPC------LSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL-SKGAVDFL--V 97 (687)
Q Consensus 31 Le~L~~~~~~pDLVLlDl---MP~------mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am-~aGA~DYL--~ 97 (687)
.+++.+ ..+++||+|+ +-. ..| .++|+.+++. .++++++|.......+.... ..|...|. .
T Consensus 17 ~~~~~~--~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~----g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~ 90 (170)
T TIGR01668 17 IDLLKK--VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAA----GRKLLIVSNNAGEQRAKAVEKALGIPVLPHAV 90 (170)
T ss_pred HHHHHH--CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHc----CCEEEEEeCCchHHHHHHHHHHcCCEEEcCCC
Confidence 345666 6788999888 221 122 3678888754 58899999865323333322 45655443 3
Q ss_pred CCCCHHHHH
Q 005631 98 KPIRKNELK 106 (687)
Q Consensus 98 KP~~~eeL~ 106 (687)
|| .++-+.
T Consensus 91 KP-~p~~~~ 98 (170)
T TIGR01668 91 KP-PGCAFR 98 (170)
T ss_pred CC-ChHHHH
Confidence 77 344333
No 394
>PRK08084 DNA replication initiation factor; Provisional
Probab=41.33 E-value=18 Score=37.36 Aligned_cols=25 Identities=4% Similarity=-0.190 Sum_probs=18.7
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.....+++| +|++|+||..+|++|=
T Consensus 42 ~~~~~~l~l-~Gp~G~GKThLl~a~~ 66 (235)
T PRK08084 42 QEHSGYIYL-WSREGAGRSHLLHAAC 66 (235)
T ss_pred CCCCCeEEE-ECCCCCCHHHHHHHHH
Confidence 344445666 8999999999998753
No 395
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=41.24 E-value=63 Score=41.31 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=18.7
Q ss_pred cccCCCCCCCChhHHHHHh-hhcCcc
Q 005631 188 MSPSDQLAECPDSTCAQVI-HSNAEI 212 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI-H~~S~R 212 (687)
|-| .|..|.||.++|++| +..+.+
T Consensus 210 vgI-~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 210 VGI-WGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred EEE-EcCCCCchHHHHHHHHHHHhhc
Confidence 555 799999999999999 444443
No 396
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=41.10 E-value=52 Score=31.91 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 39 NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 39 ~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+|||||... +. -++.+++.+. .+||+++....+.+...+.++. .-..+-|+-..+++...++..+..
T Consensus 59 l~PDlii~~~~~~----~~~~~~l~~~----gi~v~~~~~~~~~~~~~~~~~~-lg~~~g~~~~a~~~~~~~~~~~~~ 127 (195)
T cd01143 59 LKPDLVIVSSSSL----AELLEKLKDA----GIPVVVLPAASSLDEIYDQIEL-IGKITGAEEEAEKLVKEMKQKIDK 127 (195)
T ss_pred cCCCEEEEcCCcC----HHHHHHHHHc----CCcEEEeCCCCCHHHHHHHHHH-HHHHhCChHHHHHHHHHHHHHHHH
Confidence 5688887754 32 1245555543 5667666544334444443332 011233444455555554444433
No 397
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=40.99 E-value=15 Score=37.35 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=17.1
Q ss_pred ccccCCCCCCCChhHHHHHhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH 207 (687)
-++| +|+||+||+++-++|-
T Consensus 31 ~iai-tGPSG~GKStllk~va 50 (223)
T COG4619 31 FIAI-TGPSGCGKSTLLKIVA 50 (223)
T ss_pred eEEE-eCCCCccHHHHHHHHH
Confidence 3677 8999999999998873
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=40.98 E-value=17 Score=34.87 Aligned_cols=24 Identities=13% Similarity=-0.121 Sum_probs=18.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.....+++ .|+.|+||.+|+|.|=
T Consensus 20 ~~~~~i~l-~G~lGaGKTtl~~~l~ 43 (133)
T TIGR00150 20 DFGTVVLL-KGDLGAGKTTLVQGLL 43 (133)
T ss_pred CCCCEEEE-EcCCCCCHHHHHHHHH
Confidence 33444555 8999999999999873
No 399
>PRK12377 putative replication protein; Provisional
Probab=40.62 E-value=16 Score=38.59 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=26.6
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++++ .|.+||||.-+|.||-..-.+.+..++.+.
T Consensus 102 ~~l~l-~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVF-SGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34666 799999999999999776666666655555
No 400
>PRK04182 cytidylate kinase; Provisional
Probab=40.61 E-value=15 Score=35.26 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=19.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCcee
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVP 219 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~ 219 (687)
|.| +|.+|+||+++|+.+ ..+-+-+|+.
T Consensus 3 I~i-~G~~GsGKstia~~l---a~~lg~~~id 30 (180)
T PRK04182 3 ITI-SGPPGSGKTTVARLL---AEKLGLKHVS 30 (180)
T ss_pred EEE-ECCCCCCHHHHHHHH---HHHcCCcEec
Confidence 344 899999999999998 3333445543
No 401
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=40.58 E-value=20 Score=35.23 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=27.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCEN 235 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~E 235 (687)
|.| +|..|+||+++|+.+-. . -|..++ |..+-..+.+
T Consensus 2 i~i-tG~~gsGKst~~~~l~~----~--g~~~i~----~D~~~~~~~~ 38 (179)
T cd02022 2 IGL-TGGIGSGKSTVAKLLKE----L--GIPVID----ADKIAHEVYE 38 (179)
T ss_pred EEE-ECCCCCCHHHHHHHHHH----C--CCCEEe----cCHHHHhhhh
Confidence 345 89999999999999865 2 356677 7776666655
No 402
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=40.58 E-value=98 Score=33.59 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCccEEEEcc---CC--CCC--HHHHHHHHHhhcCCCCceEEEE-ecCCChHHHHHHHhCCCCEEEeCC-C
Q 005631 30 AWKILEDLTNHIDLVLTEV---MP--CLS--GVALLSKIMSHKTRKNLPVIMM-SSLDSMGLVFKCLSKGAVDFLVKP-I 100 (687)
Q Consensus 30 ALe~L~~~~~~pDLVLlDl---MP--~md--GleLL~~Ir~~~~~p~iPVIvm-Ta~~d~~~av~Am~aGA~DYL~KP-~ 100 (687)
.++.|+. ..++|-|++++ |- +.+ --+||++||+.- .+++||++- =-|+.+....-..--....|-+.| +
T Consensus 87 il~~l~~-agp~Dgv~L~LHGAmv~e~~~D~EG~Ll~rvR~~v-Gp~vpI~~tlDlHaNvs~~mv~~ad~~~~yrtyPH~ 164 (292)
T PF07364_consen 87 ILDRLRA-AGPLDGVLLDLHGAMVAEGYDDGEGDLLRRVRAIV-GPDVPIAATLDLHANVSPRMVEAADIIVGYRTYPHI 164 (292)
T ss_dssp HHHHHHH-S---SEEEEEE-S---BSS-SSHHHHHHHHHHHHH-TTTSEEEEEE-TT----HHHHHH-SEEEE---SS--
T ss_pred HHHHHHh-cCCcCEEEEeccCcEeecCCCCchHHHHHHHHHHh-CCCCeEEEEeCCCCCccHHHHHhCCEEEEcCCCCcc
Confidence 3444454 25799999999 62 222 126999999863 578988654 346776666666666788888999 5
Q ss_pred CHHHHHHHHHHHHH
Q 005631 101 RKNELKNLWQHVWR 114 (687)
Q Consensus 101 ~~eeL~~~L~~alr 114 (687)
|..|=-...-+++.
T Consensus 165 D~~etg~~aa~ll~ 178 (292)
T PF07364_consen 165 DMYETGERAARLLL 178 (292)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66554444444443
No 403
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=40.50 E-value=14 Score=36.57 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=19.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEI 212 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R 212 (687)
|.| .|.+|+||.++|+.|-..-.+
T Consensus 2 i~i-~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGI-AGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHH
Confidence 445 899999999999999766443
No 404
>PRK03839 putative kinase; Provisional
Probab=40.48 E-value=15 Score=35.89 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=22.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||+++|+.|-.. .+-+||.++
T Consensus 3 I~l-~G~pGsGKsT~~~~La~~---~~~~~id~d 32 (180)
T PRK03839 3 IAI-TGTPGVGKTTVSKLLAEK---LGYEYVDLT 32 (180)
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---hCCcEEehh
Confidence 455 699999999999998543 345777655
No 405
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=40.41 E-value=14 Score=38.00 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=19.0
Q ss_pred cccCCCCCCCChhHHHHHhhhcCc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
+++ +|++|+||.++++.+...-.
T Consensus 46 ~~l-~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 46 ILI-TGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEE-EcCCCCCHHHHHHHHHHhcC
Confidence 555 89999999999999976544
No 406
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=40.37 E-value=15 Score=36.36 Aligned_cols=21 Identities=0% Similarity=-0.108 Sum_probs=17.4
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.| .|++|+||.++++.|-..
T Consensus 5 i~l-~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 5 IWL-MGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEE-ECCCCCCHHHHHHHHhcc
Confidence 445 699999999999999544
No 407
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.21 E-value=1.2e+02 Score=31.80 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCC-ccEEEEcc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC-----C-CCE
Q 005631 26 NGLQAWKILEDLTNH-IDLVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-----G-AVD 94 (687)
Q Consensus 26 sg~eALe~L~~~~~~-pDLVLlDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a-----G-A~D 94 (687)
+..+.++.+.. .. =.+|++|+ --+ +. .+++++++++. ..+|||.--+-.+.+.+.++... | +..
T Consensus 145 ~~~e~~~~~~~--~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~---~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~g 219 (241)
T PRK14114 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEHDFSLTRKIAIE---AEVKVFAAGGISSENSLKTAQRVHRETNGLLKG 219 (241)
T ss_pred CHHHHHHHHHh--cCCCEEEEEeechhhcCCCcCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHhcccccCCcEEE
Confidence 34666666665 33 37999999 433 23 46799999876 58999999889999999988886 5 777
Q ss_pred EEe
Q 005631 95 FLV 97 (687)
Q Consensus 95 YL~ 97 (687)
.|+
T Consensus 220 viv 222 (241)
T PRK14114 220 VIV 222 (241)
T ss_pred EEE
Confidence 665
No 408
>PF13479 AAA_24: AAA domain
Probab=40.18 E-value=16 Score=37.12 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=17.8
Q ss_pred CCccccCCCCCCCChhHHHHHh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraI 206 (687)
+..++| .|++|+||.++|.-+
T Consensus 3 ~~~~lI-yG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILI-YGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEE-ECCCCCCHHHHHHhC
Confidence 345788 899999999999877
No 409
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=40.15 E-value=1.4e+02 Score=32.19 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=54.2
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEcc---CC---C--CCHHHHHHHHHhhcCCCCceEEEEecCC-ChHHHHHHHhCCCC
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEV---MP---C--LSGVALLSKIMSHKTRKNLPVIMMSSLD-SMGLVFKCLSKGAV 93 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDl---MP---~--mdGleLL~~Ir~~~~~p~iPVIvmTa~~-d~~~av~Am~aGA~ 93 (687)
.+.+.++|.+.++. ..+|.+-+-+ -+ + .=|+++|++|++. ..+|++++-+.+ ..+.+.++++.|+.
T Consensus 151 s~t~~eea~~f~~~--tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~---~~iPlV~hG~SGI~~e~~~~~i~~G~~ 225 (281)
T PRK06806 151 LLTSTTEAKRFAEE--TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV---VHIPLVLHGGSGISPEDFKKCIQHGIR 225 (281)
T ss_pred eeCCHHHHHHHHHh--hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 46899999999876 6799888833 22 1 2389999999976 479999887554 67889999999988
Q ss_pred EEEe
Q 005631 94 DFLV 97 (687)
Q Consensus 94 DYL~ 97 (687)
.+=+
T Consensus 226 kinv 229 (281)
T PRK06806 226 KINV 229 (281)
T ss_pred EEEE
Confidence 7654
No 410
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=40.15 E-value=1.7e+02 Score=30.05 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHH
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 106 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~ 106 (687)
++..+++.. .|++|+=. ..+.-|+.+++.+. ..+|||. |... ...+.+..|...++.+|.+.++|.
T Consensus 254 ~~~~~~~~~----ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~ 320 (359)
T cd03823 254 EEIDDFYAE----IDVLVVPSIWPENFPLVIREALA-----AGVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLA 320 (359)
T ss_pred HHHHHHHHh----CCEEEEcCcccCCCChHHHHHHH-----CCCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHH
Confidence 444444443 56666533 34556677777764 3577775 3322 344556777889999999999999
Q ss_pred HHHHHHHH
Q 005631 107 NLWQHVWR 114 (687)
Q Consensus 107 ~~L~~alr 114 (687)
..|..++.
T Consensus 321 ~~i~~l~~ 328 (359)
T cd03823 321 AALERLID 328 (359)
T ss_pred HHHHHHHh
Confidence 99998875
No 411
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=40.15 E-value=1e+02 Score=29.94 Aligned_cols=69 Identities=20% Similarity=0.413 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCccEEEEcc-CCCCCHHHH-HHHHHhhcCCCCceEE-EEecCCChHHHHHHHhCCCCEEEeCCCCHHHHH
Q 005631 30 AWKILEDLTNHIDLVLTEV-MPCLSGVAL-LSKIMSHKTRKNLPVI-MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 106 (687)
Q Consensus 30 ALe~L~~~~~~pDLVLlDl-MP~mdGleL-L~~Ir~~~~~p~iPVI-vmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~ 106 (687)
..++|++ .+||+||+=- +|. .+ +..+++....+.+|++ ++|.++.. =...+.-+++-|++- -++++
T Consensus 81 l~~~l~~--~~PD~IIsThp~~~----~~~l~~lk~~~~~~~~p~~tvvTD~~~~--H~~W~~~~~D~y~Va---se~~~ 149 (169)
T PF06925_consen 81 LIRLLRE--FQPDLIISTHPFPA----QVPLSRLKRRGRLPNIPVVTVVTDFDTV--HPFWIHPGVDRYFVA---SEEVK 149 (169)
T ss_pred HHHHHhh--cCCCEEEECCcchh----hhHHHHHHHhhcccCCcEEEEEcCCCCC--CcCeecCCCCEEEEC---CHHHH
Confidence 4455666 8999999977 765 34 5555555434578864 77876421 123456788888874 34444
Q ss_pred HHH
Q 005631 107 NLW 109 (687)
Q Consensus 107 ~~L 109 (687)
..+
T Consensus 150 ~~l 152 (169)
T PF06925_consen 150 EEL 152 (169)
T ss_pred HHH
Confidence 443
No 412
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=39.99 E-value=15 Score=34.03 Aligned_cols=21 Identities=5% Similarity=-0.219 Sum_probs=17.5
Q ss_pred CccccCCCCCCCChhHHHHHhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH 207 (687)
.-+.| .|+||+||+++++++.
T Consensus 16 e~v~I-~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLI-TGDSGIGKTELALELI 36 (107)
T ss_pred EEEEE-EcCCCCCHHHHHHHhh
Confidence 33566 6999999999999986
No 413
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=39.98 E-value=2.6e+02 Score=26.51 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=15.8
Q ss_pred ccccCCCCCCCChhHHHHHhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH 207 (687)
.|.+ .|.+|+||+++-.++-
T Consensus 104 ~v~~-~G~~nvGKStliN~l~ 123 (157)
T cd01858 104 SVGF-IGYPNVGKSSIINTLR 123 (157)
T ss_pred EEEE-EeCCCCChHHHHHHHh
Confidence 3545 6999999999987774
No 414
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=39.78 E-value=1.7e+02 Score=33.11 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecC---CChHHHHHHHhCCCCEE-EeCCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL---DSMGLVFKCLSKGAVDF-LVKPI 100 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~---~d~~~av~Am~aGA~DY-L~KP~ 100 (687)
+.++|++++...-..++|++++- ++..| ++-+.+|++.- ...+|| +... .+...+.++++.|+.|+ ++||-
T Consensus 262 t~~eai~~~~~l~e~~~i~~iEdPl~~~D-~eg~~~L~~~~-g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~ 337 (408)
T cd03313 262 TSEELIDYYKELVKKYPIVSIEDPFDEDD-WEGWAKLTAKL-GDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVN 337 (408)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCCCcC-HHHHHHHHHhc-CCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEccc
Confidence 45888887765323588999988 87655 56666666541 123444 3332 35888999999886554 56887
Q ss_pred CHHHHHHHH
Q 005631 101 RKNELKNLW 109 (687)
Q Consensus 101 ~~eeL~~~L 109 (687)
..--|...+
T Consensus 338 ~iGGite~~ 346 (408)
T cd03313 338 QIGTLTETI 346 (408)
T ss_pred ccCCHHHHH
Confidence 654444443
No 415
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=39.74 E-value=41 Score=37.88 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 100 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~ 100 (687)
+.++..|.+. .+..+||++|-.-.+..-.+|+..-|.||..+-+
T Consensus 107 L~~~~~L~~~--~~~~~VvLVSKDi~~RvkA~a~Gl~AeDY~~dr~ 150 (436)
T COG1875 107 LAVVLNLQEE--EPGRRVVLVSKDINLRVKASALGLAAEDYENDRV 150 (436)
T ss_pred HHHHHHHHhc--CCCCcEEEEECCccceeehhhcCccHHHhhhhhh
Confidence 5677777766 4678999999765555555555555889988765
No 416
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=39.63 E-value=77 Score=34.55 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=50.3
Q ss_pred eCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCC
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIR 101 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~ 101 (687)
.-+.++|++.++.. ..+++.+++- +|. +.++.++.|++. ..+||++=-.-.+...+.++++.|+.|++ .||..
T Consensus 199 ~~~~~~a~~~~~~l-~~~~i~~iEqP~~~-~~~~~~~~l~~~---~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 199 RWDLAEAIRLARAL-EEYDLFWFEEPVPP-DDLEGLARLRQA---TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred CCCHHHHHHHHHHh-CccCCCeEcCCCCc-cCHHHHHHHHHh---CCCCEEeccccccHHHHHHHHHhCCCCEEecCccc
Confidence 34667888887763 2456667777 664 346777778766 46787765555678899999999988887 45533
No 417
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=39.31 E-value=16 Score=36.58 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=20.8
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
.+.....+.| .|++|+||++++++|=-
T Consensus 24 ~i~~G~~~~l-~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 24 HIRKGEFLFL-TGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEcCCCEEEE-ECCCCCCHHHHHHHHhC
Confidence 3455555666 69999999999999943
No 418
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.88 E-value=2.6e+02 Score=30.05 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHHH---HHHhhCCCccEEEEcc-CC-------------CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 27 GLQAWK---ILEDLTNHIDLVLTEV-MP-------------CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 27 g~eALe---~L~~~~~~pDLVLlDl-MP-------------~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
.+++++ .|.+ ..+|.|-+.. .. ....+++++.|++. -.+|||..-+..+.+.+.++++
T Consensus 227 ~~e~~~la~~l~~--~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 227 LEEAIEIAKALEE--AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA---VKIPVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH---CCCCEEEeCCCCCHHHHHHHHH
Confidence 455544 4444 4588776543 21 13356788888876 3799998888888999999999
Q ss_pred CCCCEEEe
Q 005631 90 KGAVDFLV 97 (687)
Q Consensus 90 aGA~DYL~ 97 (687)
.|..|++.
T Consensus 302 ~g~aD~V~ 309 (327)
T cd02803 302 EGKADLVA 309 (327)
T ss_pred CCCCCeee
Confidence 97777654
No 419
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=38.81 E-value=15 Score=37.39 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=18.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S 210 (687)
+++++|+||+||.++.+++-..-
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 45558999999999999986443
No 420
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=38.81 E-value=13 Score=34.20 Aligned_cols=27 Identities=7% Similarity=-0.156 Sum_probs=20.7
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcc
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEI 212 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R 212 (687)
...+.| .|++|+||+++.++|--.-+.
T Consensus 11 g~~~~i-~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAI-VGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHTTSSHE
T ss_pred CCEEEE-EccCCCccccceeeecccccc
Confidence 334566 699999999999999655543
No 421
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=38.80 E-value=16 Score=39.82 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=22.8
Q ss_pred hhhcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 179 AVEVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 179 ~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
-+++.....+-| .||+|+||++++++|--.
T Consensus 35 sl~i~~Ge~~~I-vG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 35 SFTLERGKTLAV-VGESGCGKSTLARLLTMI 64 (327)
T ss_pred EEEECCCCEEEE-ECCCCCcHHHHHHHHHcC
Confidence 344455556667 699999999999999654
No 422
>CHL00095 clpC Clp protease ATP binding subunit
Probab=38.73 E-value=19 Score=44.26 Aligned_cols=47 Identities=4% Similarity=-0.147 Sum_probs=29.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAK 238 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESel 238 (687)
++++.|++|+||..+|+++=..=--...+||.+| +....+....+.|
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d----~s~~~~~~~~~~l 587 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD----MSEYMEKHTVSKL 587 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE----chhccccccHHHh
Confidence 4555899999999999887432111135788888 5544443333333
No 423
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.58 E-value=1.6e+02 Score=31.00 Aligned_cols=70 Identities=13% Similarity=0.272 Sum_probs=53.8
Q ss_pred eCCHHHHHHHHHhhCCCc-cEEEEcc-CCC---CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 24 ATNGLQAWKILEDLTNHI-DLVLTEV-MPC---LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~p-DLVLlDl-MP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
..+..+..+.+.. ..+ .|+++|+ --+ ..-++++++|.+. ..+||++=.+-.+.+.+.+.+..|+.-+++-
T Consensus 29 ~~dp~~~a~~~~~--~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNE--KEVDELIVLDIDASKRGSEPNYELIENLASE---CFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEECCCCcCCCcccHHHHHHHHHh---CCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 4577777777776 444 5899999 443 3347899998876 5789988788889999999999999887764
No 424
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.49 E-value=13 Score=42.82 Aligned_cols=45 Identities=4% Similarity=-0.114 Sum_probs=0.0
Q ss_pred ccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHh
Q 005631 160 NGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 160 ~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
...|++|+-... ..+...+..-.-+..+|+ +|+.||||.++|+++
T Consensus 12 ~~~divGq~~i~-~~L~~~i~~~~l~~~~Lf-~GPpGtGKTTlA~~l 56 (472)
T PRK14962 12 TFSEVVGQDHVK-KLIINALKKNSISHAYIF-AGPRGTGKTTVARIL 56 (472)
T ss_pred CHHHccCcHHHH-HHHHHHHHcCCCCeEEEE-ECCCCCCHHHHHHHH
No 425
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=38.48 E-value=25 Score=37.29 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=32.7
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
....+||+ .|+.||||+.+.+++...=...+=..|-|. ......||+
T Consensus 50 ~pannvLL-~G~rGtGKSSlVkall~~y~~~GLRlIev~-k~~L~~l~~ 96 (249)
T PF05673_consen 50 LPANNVLL-WGARGTGKSSLVKALLNEYADQGLRLIEVS-KEDLGDLPE 96 (249)
T ss_pred CCCcceEE-ecCCCCCHHHHHHHHHHHHhhcCceEEEEC-HHHhccHHH
Confidence 34445899 699999999999999876555555667766 233444444
No 426
>PRK06851 hypothetical protein; Provisional
Probab=38.45 E-value=15 Score=41.14 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=34.8
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAK 238 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESel 238 (687)
++| +|.+||||.++.+.|=..-...+-.-.... |+--|+.|+=.-+
T Consensus 217 ~~i-~G~pG~GKstl~~~i~~~a~~~G~~v~~~h----C~~dPdslD~viI 262 (367)
T PRK06851 217 YFL-KGRPGTGKSTMLKKIAKAAEERGFDVEVYH----CGFDPDSLDMVII 262 (367)
T ss_pred EEE-eCCCCCcHHHHHHHHHHHHHhCCCeEEEEe----CCCCCCCcceEEe
Confidence 566 999999999988877666555565666667 9999988765443
No 427
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=38.44 E-value=1.2e+02 Score=31.50 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc--CCCCCH--HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl--MP~mdG--leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
+..+.++.|.. ...++||++|+ ...+.| .+++..+... ..-||++=-+-.-++....+...|+...|+-
T Consensus 138 d~le~Vk~l~~-~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~---s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 138 DFLETVKDLNY-RRDPGLIVLDIGAVGTKSGPDYELLTKVLEL---SEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred hHHHHHHHHhc-cCCCCeEEEEccccccccCCCHHHHHHHHHh---ccCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 33444443332 24689999999 555665 5799998876 5678888778888999999999999998874
No 428
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=38.35 E-value=85 Score=34.34 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=34.9
Q ss_pred CCceEEEEecC-CChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 68 KNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 68 p~iPVIvmTa~-~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.++|.||+|-. ..+...+.+-+.--.-.|.-++...+|...|...|.+.
T Consensus 80 ~~~P~iI~sk~~~~p~~l~~~a~~~~~pil~s~~~ts~l~~~l~~yL~~~ 129 (308)
T COG1493 80 LDTPALIVSKGLPIPEELLDAAKKYNIPILTSKLSTSELSFTLTNYLSRP 129 (308)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCceEEecchHHHHHHHHHHHhhhh
Confidence 57888888763 44556666666555667777888899998888877654
No 429
>PRK13946 shikimate kinase; Provisional
Probab=38.34 E-value=18 Score=35.68 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=25.5
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..|++ .|..|+||.++|+.+ +.+-+-|||-.+
T Consensus 11 ~~I~l-~G~~GsGKsti~~~L---A~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVL-VGLMGAGKSTVGRRL---ATMLGLPFLDAD 42 (184)
T ss_pred CeEEE-ECCCCCCHHHHHHHH---HHHcCCCeECcC
Confidence 45666 799999999999998 555567888766
No 430
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=38.30 E-value=15 Score=36.56 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=24.3
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+...++++ .|.+||||..+|.+|-..--+.+.+-+-++
T Consensus 45 ~~~~~l~l-~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 45 ENGENLIL-YGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp SC--EEEE-EESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred ccCeEEEE-EhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 55566777 799999999999998544333444444444
No 431
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.26 E-value=17 Score=36.29 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=20.8
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
.+....-+.| .|++|+||+++.++|=-
T Consensus 22 ~i~~G~~~~i-~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 22 SVEKGEIFGL-LGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEcCCcEEEE-ECCCCCCHHHHHHHHhC
Confidence 3445555667 79999999999999943
No 432
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=38.14 E-value=17 Score=37.06 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=20.8
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
++.....+.| .|++|+||++++++|=-
T Consensus 24 ~i~~Ge~~~l-~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 24 NINPGEFVAI-IGPSGAGKSTLLRCINR 50 (243)
T ss_pred EEcCCCEEEE-ECCCCCCHHHHHHHHhC
Confidence 3445555667 79999999999999943
No 433
>PTZ00301 uridine kinase; Provisional
Probab=38.12 E-value=17 Score=37.31 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.6
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|-| .|.||+||+++|+.|..
T Consensus 6 IgI-aG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 6 IGI-SGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEE-ECCCcCCHHHHHHHHHH
Confidence 344 89999999999998853
No 434
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=38.09 E-value=17 Score=34.46 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=22.1
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhhcC
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~~S 210 (687)
++.....+.| .|++|+||+++.++|=-.-
T Consensus 22 ~~~~Ge~~~i-~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 22 TINPGDRIGL-VGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCEEEE-ECCCCCCHHHHHHHHcCCC
Confidence 3455555777 7999999999999985443
No 435
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=38.05 E-value=1e+02 Score=32.39 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC--HHHHHHHHHhhCCCccEEEEcc-CC-CCCHH-HHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 7 MLLLLCFEIAVMKVITEATN--GLQAWKILEDLTNHIDLVLTEV-MP-CLSGV-ALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~A~s--g~eALe~L~~~~~~pDLVLlDl-MP-~mdGl-eLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.++..+|+..||+++..-.+ .++.++.+++ .+||+|-+-. |- -|-++ ++.++|++.. -.-+|+++-+-..
T Consensus 122 ~iV~~ml~~aGfevidLG~dvP~e~fve~a~e--~k~d~v~~SalMTttm~~~~~viE~L~eeG--iRd~v~v~vGGAp- 196 (227)
T COG5012 122 NIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE--LKPDLVSMSALMTTTMIGMKDVIELLKEEG--IRDKVIVMVGGAP- 196 (227)
T ss_pred HHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH--cCCcEEechHHHHHHHHHHHHHHHHHHHcC--CccCeEEeecCcc-
Confidence 46778899999997766544 5778888888 8899999887 74 34554 4777888763 4667777754332
Q ss_pred HHHHHHHhCCCCEEEeCC
Q 005631 82 GLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP 99 (687)
-...-+-+.||+.|-.-+
T Consensus 197 vtq~~a~~iGAD~~~~dA 214 (227)
T COG5012 197 VTQDWADKIGADAYAEDA 214 (227)
T ss_pred ccHHHHHHhCCCccCcCH
Confidence 222234467888886544
No 436
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=38.04 E-value=1.2e+02 Score=30.71 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=31.4
Q ss_pred CCccEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 39 NHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 39 ~~pDLVLlDl-MP-----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
..+||||+|= +. -++--++++.|+..+ +.+. ||||++.-++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp--~~~e-vILTGR~~p~~Lie~ 165 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP--SHVD-VILTGPEMPESLLAI 165 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC--CCCE-EEEECCCCCHHHHHh
Confidence 6799999997 43 234557888887663 4444 557888776665554
No 437
>PRK15453 phosphoribulokinase; Provisional
Probab=38.04 E-value=17 Score=39.38 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=17.9
Q ss_pred ccccCCCCCCCChhHHHHHhhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~ 208 (687)
+++.++|-||+||.++|++|..
T Consensus 6 piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4444499999999999999864
No 438
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.01 E-value=1.5e+02 Score=31.94 Aligned_cols=68 Identities=25% Similarity=0.246 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCCCccEEEEccCCC---CCHHHHHHHHHhhcCCCCceEEEEecCCC----hHHHHHHHhCCCCEEEeC
Q 005631 28 LQAWKILEDLTNHIDLVLTEVMPC---LSGVALLSKIMSHKTRKNLPVIMMSSLDS----MGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDlMP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~d----~~~av~Am~aGA~DYL~K 98 (687)
.+|++.+.+ ...||.=+.+ |. ..--+++..++......++|.|++|+--+ .+.++-||++||..||.=
T Consensus 189 ~~a~k~fsd--~GadvlKvev-PvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~G 263 (306)
T COG3684 189 IEAMKEFSD--SGADVLKVEV-PVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAG 263 (306)
T ss_pred HHHHHHhcc--CCCceEEeec-ceeccCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEec
Confidence 455555554 4566555554 43 23456888887776567999999998666 456777899999999974
No 439
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.87 E-value=17 Score=35.38 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=21.1
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhh
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
+++.....+.| .|++|+||+++.++|=
T Consensus 21 ~~i~~Ge~~~i-~G~nGsGKStLl~~l~ 47 (173)
T cd03230 21 LTVEKGEIYGL-LGPNGAGKTTLIKIIL 47 (173)
T ss_pred EEEcCCcEEEE-ECCCCCCHHHHHHHHh
Confidence 33455556777 7999999999999983
No 440
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.83 E-value=3.8e+02 Score=29.05 Aligned_cols=80 Identities=14% Similarity=-0.023 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 6 AMLLLLCFEIAV--MKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 6 r~ll~~lLe~~G--~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
...+..+-+..+ ..+...+.+.+++.+.+.. .+|+|+||-|.- -++-+.+... +...+|-.++.-+.+.
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~---e~l~~av~~~---~~~~~leaSGgI~~~n 250 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSL---DDLREGVELV---DGRAIVEASGNVNLNT 250 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCH---HHHHHHHHHh---CCCeEEEEECCCCHHH
Confidence 344455555554 3345689999999999864 799999997322 2333333322 2223677888888888
Q ss_pred HHHHHhCCCCE
Q 005631 84 VFKCLSKGAVD 94 (687)
Q Consensus 84 av~Am~aGA~D 94 (687)
+.+-...|++-
T Consensus 251 i~~yA~tGVD~ 261 (281)
T PRK06543 251 VGAIASTGVDV 261 (281)
T ss_pred HHHHHhcCCCE
Confidence 88888888653
No 441
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=37.59 E-value=18 Score=36.35 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=21.3
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
+.+.....+.| .|++|+||+++.++|=-
T Consensus 26 l~i~~Ge~~~i-~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 26 FTVKPGEVTGL-LGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEEcCCcEEEE-ECCCCCCHHHHHHHHhC
Confidence 33445555777 79999999999999943
No 442
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=37.55 E-value=18 Score=36.35 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.7
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.....+.| .|++|+||+++.++|=-.
T Consensus 27 i~~G~~~~l-~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 27 IEKGEFVAI-VGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCEEEE-EcCCCCCHHHHHHHHhCC
Confidence 445555666 799999999999999433
No 443
>PF13245 AAA_19: Part of AAA domain
Probab=37.39 E-value=18 Score=31.04 Aligned_cols=26 Identities=12% Similarity=-0.103 Sum_probs=18.9
Q ss_pred CCccccCCCCCCCChh-HHHHHhhhcC
Q 005631 185 PRHMSPSDQLAECPDS-TCAQVIHSNA 210 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKE-l~AraIH~~S 210 (687)
..+++++.|..||||. ++++.|...-
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555899999999 7777776554
No 444
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=37.34 E-value=3.4e+02 Score=29.02 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
.....|++++..+.+.+|+-+.+.. ...||=++- +-.. -.++....|...- ..+..+|.-|+-.+.+.+.+..
T Consensus 151 ~A~~LGm~~LVEVh~~eEl~rAl~~---ga~iIGINnRdL~tf~vdl~~t~~la~~~-p~~~~~IsESGI~~~~dv~~l~ 226 (254)
T COG0134 151 RAHELGMEVLVEVHNEEELERALKL---GAKIIGINNRDLTTLEVDLETTEKLAPLI-PKDVILISESGISTPEDVRRLA 226 (254)
T ss_pred HHHHcCCeeEEEECCHHHHHHHHhC---CCCEEEEeCCCcchheecHHHHHHHHhhC-CCCcEEEecCCCCCHHHHHHHH
Confidence 3467899999999999999888764 566664443 3322 1334455554331 1345566667778899999999
Q ss_pred hCCCCEEEeC
Q 005631 89 SKGAVDFLVK 98 (687)
Q Consensus 89 ~aGA~DYL~K 98 (687)
+.||+.||+=
T Consensus 227 ~~ga~a~LVG 236 (254)
T COG0134 227 KAGADAFLVG 236 (254)
T ss_pred HcCCCEEEec
Confidence 9999999984
No 445
>PRK07667 uridine kinase; Provisional
Probab=37.25 E-value=17 Score=36.26 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=23.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
|.| +|.+|+||+++|+.|...-...+-+.+.+
T Consensus 20 IgI-~G~~gsGKStla~~L~~~l~~~~~~~~~i 51 (193)
T PRK07667 20 LGI-DGLSRSGKTTFVANLKENMKQEGIPFHIF 51 (193)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 555 99999999999999977554444453333
No 446
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=37.23 E-value=2.5e+02 Score=29.10 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=60.8
Q ss_pred eCCHHHHHHHHHhhCCCc-cEEEEcc---CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 24 ATNGLQAWKILEDLTNHI-DLVLTEV---MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~p-DLVLlDl---MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
..+..+..+.+.+ ..+ .|.|+|+ +....-+++++.|.+. ..+||.+=-+-.+.+.+.+.+..||.-.++--
T Consensus 34 ~~dp~~~a~~~~~--~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~---~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 34 TSDPLDVARAYKE--LGFRGLYIADLDAIMGRGDNDEAIRELAAA---WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEeCccccCCCccHHHHHHHHHh---CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 4577777777766 444 4778888 3334457888888765 46899888888899999999999999888765
Q ss_pred CCHHHHHHHHHHHHHHH
Q 005631 100 IRKNELKNLWQHVWRRC 116 (687)
Q Consensus 100 ~~~eeL~~~L~~alr~~ 116 (687)
..... ..+..+++++
T Consensus 109 ~~~~~--~~~~~~~~~~ 123 (233)
T cd04723 109 ETLPS--DDDEDRLAAL 123 (233)
T ss_pred eeccc--hHHHHHHHhc
Confidence 44333 3445555544
No 447
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=37.21 E-value=19 Score=36.59 Aligned_cols=28 Identities=11% Similarity=-0.078 Sum_probs=21.5
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
.+.....+.| .|++|+||++++++|--.
T Consensus 22 ~i~~Ge~~~l-~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 22 EVPKGEVTCV-LGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EECCCCEEEE-ECCCCCCHHHHHHHHhCC
Confidence 3445555667 799999999999999544
No 448
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=37.18 E-value=91 Score=32.88 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=51.2
Q ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 9 LLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
+....+..|... ....-..++++.|.+ +++-++=+ -.+.+-+.||+.+.+. ..|||+=|+-.+.+++.+|
T Consensus 61 L~~~~~~~gi~f-~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~t----gkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 61 LFEYCKELGIDF-FSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAKT----GKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHTT-EE-EEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHcCCEE-EECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHHh----CCcEEEECCCCCHHHHHHH
Confidence 455667889884 455556777888876 44555556 6788899999999864 7899999998876665554
Q ss_pred ---H-hCCCCEEEe------CCCCHHHHHHH
Q 005631 88 ---L-SKGAVDFLV------KPIRKNELKNL 108 (687)
Q Consensus 88 ---m-~aGA~DYL~------KP~~~eeL~~~ 108 (687)
+ +.|..+++. .|..++++-..
T Consensus 132 v~~~~~~~~~~l~llHC~s~YP~~~e~~NL~ 162 (241)
T PF03102_consen 132 VEVLREAGNEDLVLLHCVSSYPTPPEDVNLR 162 (241)
T ss_dssp HHHHHHHCT--EEEEEE-SSSS--GGG--TT
T ss_pred HHHHHhcCCCCEEEEecCCCCCCChHHcChH
Confidence 4 346555553 35555555433
No 449
>PRK08727 hypothetical protein; Validated
Probab=37.18 E-value=18 Score=37.38 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=17.1
Q ss_pred CccccCCCCCCCChhHHHHHh
Q 005631 186 RHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraI 206 (687)
.++++ .|++||||.-+|++|
T Consensus 42 ~~l~l-~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYL-SGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEE-ECCCCCCHHHHHHHH
Confidence 34677 799999999999997
No 450
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=37.04 E-value=1.5e+02 Score=29.55 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=57.9
Q ss_pred HHHHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-C-CCC----CHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 10 LLCFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 10 ~~lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-P~m----dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
...|+..|+.+ +.-+..+..-+..+.. .+||.|-+|. + -.. ....+++.|......-.+. ||.++-.+.+
T Consensus 139 i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~~ 215 (241)
T smart00052 139 LQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVETPE 215 (241)
T ss_pred HHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCCHH
Confidence 34567788873 2224456677788887 7899999997 3 222 1334566555442123444 5567888889
Q ss_pred HHHHHHhCCCC----EEEeCCCCH
Q 005631 83 LVFKCLSKGAV----DFLVKPIRK 102 (687)
Q Consensus 83 ~av~Am~aGA~----DYL~KP~~~ 102 (687)
....+...|++ .|+.||...
T Consensus 216 ~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 216 QLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHcCCCEEeeceeccCCCC
Confidence 99999999985 456677654
No 451
>PRK08116 hypothetical protein; Validated
Probab=36.95 E-value=18 Score=38.45 Aligned_cols=35 Identities=11% Similarity=-0.101 Sum_probs=25.7
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++++ .|++||||..+|.+|-..--..+.+++-++
T Consensus 115 ~gl~l-~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLL-WGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34777 799999999999998544333356777766
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=36.90 E-value=18 Score=34.15 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=17.8
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.| .|+||+||.++++.|...
T Consensus 2 i~i-~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVL-SGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEE-ECCCCCCHHHHHHHHHhc
Confidence 445 699999999999999765
No 453
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.84 E-value=1.5e+02 Score=33.76 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred EEEeCCHHHHHHHHHhhCCCccEEEEccCCCC------------CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 21 ITEATNGLQAWKILEDLTNHIDLVLTEVMPCL------------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 21 V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~m------------dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
+.-+.+.++|..++.. ..|.|.+-+=|+. .-+.++..+.+.-....+|||.--+-.....+.+|+
T Consensus 199 ~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KAL 275 (404)
T PRK06843 199 AGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAI 275 (404)
T ss_pred EEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH
Confidence 3457888888888764 6888774431211 123344333332112469999988899999999999
Q ss_pred hCCCCEEEeC
Q 005631 89 SKGAVDFLVK 98 (687)
Q Consensus 89 ~aGA~DYL~K 98 (687)
.+||+..+.=
T Consensus 276 alGA~aVmvG 285 (404)
T PRK06843 276 AAGADSVMIG 285 (404)
T ss_pred HcCCCEEEEc
Confidence 9999988763
No 454
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=36.80 E-value=19 Score=36.90 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=21.4
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
.+.....+.| .|++|+||++++++|=-.
T Consensus 24 ~i~~Ge~~~i-~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 24 DCPQGETLVL-LGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEcCCCEEEE-ECCCCCCHHHHHHHHhCC
Confidence 3455555777 799999999999998433
No 455
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=36.74 E-value=2.5e+02 Score=30.58 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=44.3
Q ss_pred ccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 41 pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.|+.++ . .|..-|+.+++.+. ..+|||. |... .+.+.+..|...||+.|.++++|...|.+++..
T Consensus 301 adv~v~-~s~~e~~~~~llEAmA-----~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 301 SDVHVY-LTYPFVLSWSLLEAMA-----CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred CcEEEE-cCcccccchHHHHHHH-----CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 344443 3 45555666777664 4678875 3333 344556678899999999999999999888753
No 456
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=21 Score=40.93 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=25.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
-||+ .|+.||||.++|+||=..+. -+|+.|.
T Consensus 278 giLl-~GpPGtGKT~lAkava~~~~---~~fi~v~ 308 (494)
T COG0464 278 GVLL-YGPPGTGKTLLAKAVALESR---SRFISVK 308 (494)
T ss_pred eeEE-ECCCCCCHHHHHHHHHhhCC---CeEEEee
Confidence 3666 89999999999999966444 4899998
No 457
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=36.73 E-value=1.8e+02 Score=31.15 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=49.8
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHH-HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGl-eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+...+.+.+|+.+.+. ...|.|.+|- -|. ++ ++++.++.. .+.+||+.+-+ -+.+.+.+..+.|++.+.+
T Consensus 186 IgVev~t~eea~~A~~---~gaD~I~ld~~~p~--~l~~~~~~~~~~--~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 186 IVVEVDSLEEALAAAE---AGADILQLDKFSPE--ELAELVPKLRSL--APPVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEEcCCHHHHHHHHH---cCCCEEEECCCCHH--HHHHHHHHHhcc--CCCceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 3467899999999875 4799999998 664 22 344445433 35677665544 5778999999999987743
No 458
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=36.64 E-value=15 Score=41.90 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred ccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHh
Q 005631 160 NGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 160 ~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
...|++|+..... ..+.......-...+++.|+.|+||.++|+++
T Consensus 15 ~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 15 TFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred CHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHH
No 459
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=36.60 E-value=18 Score=36.55 Aligned_cols=18 Identities=17% Similarity=-0.005 Sum_probs=16.0
Q ss_pred cccCCCCCCCChhHHHHHh
Q 005631 188 MSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI 206 (687)
++| +|++|+||+++.|.|
T Consensus 28 ~~l-tGpNg~GKSTllr~i 45 (199)
T cd03283 28 ILI-TGSNMSGKSTFLRTI 45 (199)
T ss_pred EEE-ECCCCCChHHHHHHH
Confidence 445 899999999999998
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=36.59 E-value=19 Score=36.25 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=17.3
Q ss_pred cccCCCCCCCChhHHHHH-hhhcCc
Q 005631 188 MSPSDQLAECPDSTCAQV-IHSNAE 211 (687)
Q Consensus 188 Vli~~GEsGTGKEl~Ara-IH~~S~ 211 (687)
|+| .|++|+||.+++++ ++...+
T Consensus 4 ilI-~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLV-TGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHhhh
Confidence 455 89999999999986 444443
No 461
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=22 Score=38.28 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=20.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.-+..||. +|+.||||.|.|||--
T Consensus 203 ~pPKGvLm-YGPPGTGKTlmARAcA 226 (424)
T KOG0652|consen 203 RPPKGVLM-YGPPGTGKTLMARACA 226 (424)
T ss_pred CCCCceEe-eCCCCCcHHHHHHHHH
Confidence 56666999 8999999999999953
No 462
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=36.49 E-value=18 Score=42.28 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=21.4
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
+.....+=| .||||+||+++||+|=-.-+
T Consensus 314 l~~GE~lgl-VGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 314 LREGETLGL-VGESGSGKSTLARILAGLLP 342 (539)
T ss_pred ecCCCEEEE-ECCCCCCHHHHHHHHhCCCC
Confidence 344445555 69999999999999964443
No 463
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=36.43 E-value=2.3e+02 Score=29.12 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc--C--CCCCHHHHHHHHHhhcCCCCce-EEEEecCCChHHHH
Q 005631 12 CFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV--M--PCLSGVALLSKIMSHKTRKNLP-VIMMSSLDSMGLVF 85 (687)
Q Consensus 12 lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl--M--P~mdGleLL~~Ir~~~~~p~iP-VIvmTa~~d~~~av 85 (687)
.|+..|+.+ ++.+-+..+|+..+.. ..+.|--=+ | -+.||+++++.+.+.-.....+ -|+..+..+...+.
T Consensus 96 ~L~~~gi~v~~T~V~s~~Qa~~Aa~A---GA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~ 172 (211)
T cd00956 96 KLSEEGIKTNVTAIFSAAQALLAAKA---GATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVI 172 (211)
T ss_pred HHHHcCCceeeEEecCHHHHHHHHHc---CCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHH
Confidence 345556653 6678888888888775 244433222 2 3678999988887653222323 45667778899999
Q ss_pred HHHhCCCCEEEeCC
Q 005631 86 KCLSKGAVDFLVKP 99 (687)
Q Consensus 86 ~Am~aGA~DYL~KP 99 (687)
+++.+|++-+-+-|
T Consensus 173 ~a~~~Gad~vTv~~ 186 (211)
T cd00956 173 EAALAGADAITLPP 186 (211)
T ss_pred HHHHcCCCEEEeCH
Confidence 99999998765544
No 464
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.41 E-value=3.6e+02 Score=27.87 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=63.6
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCce-EEE-EecCCChHHHHHH
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP-VIM-MSSLDSMGLVFKC 87 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iP-VIv-mTa~~d~~~av~A 87 (687)
..|...+.-.|....+.++++.+++.. ..--+=++++ |-.-..++.++.|++. ++.-| +++ .-.--+.+.+.+|
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~--~~~~p~~~vGaGTV~~~~~~~~a 84 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVEL--YKDDPEVLIGAGTVLDAVTARLA 84 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHH--cCCCCCeEEeeeeCCCHHHHHHH
Confidence 455666766688899999999887652 2334557788 8777899999999876 33322 322 2223468899999
Q ss_pred HhCCCCEEEeCCCCHHHHHH
Q 005631 88 LSKGAVDFLVKPIRKNELKN 107 (687)
Q Consensus 88 m~aGA~DYL~KP~~~eeL~~ 107 (687)
+++||. ||+-|.-..+|..
T Consensus 85 ~~aGA~-FivsP~~~~~v~~ 103 (213)
T PRK06552 85 ILAGAQ-FIVSPSFNRETAK 103 (213)
T ss_pred HHcCCC-EEECCCCCHHHHH
Confidence 999985 7777855444443
No 465
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=36.23 E-value=1.3e+02 Score=30.63 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCC----------ChHHHHHHHhCCCCEEEe
Q 005631 54 GVALLSKIMSHKTRKNLPVIMMSSLD----------SMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 54 GleLL~~Ir~~~~~p~iPVIvmTa~~----------d~~~av~Am~aGA~DYL~ 97 (687)
+++.++.+++. ..+|||.|+..+ ..+.+.+|.++||+ ||+
T Consensus 44 ~~~~i~~i~~~---~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~ 93 (221)
T PRK01130 44 GVEDIKAIRAV---VDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIA 93 (221)
T ss_pred CHHHHHHHHHh---CCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEE
Confidence 37888888876 478988665422 34578999999998 665
No 466
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=36.22 E-value=1.4e+02 Score=34.86 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=40.8
Q ss_pred CCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 39 NHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 39 ~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
..+|+|.+|. -.. ..-++++++|++. ++.++||. -.-.+.+.+..++++||+-+.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~--~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSN--YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhh--CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 5799999998 432 2347899999986 57776665 234567899999999999664
No 467
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=36.21 E-value=1.4e+02 Score=32.06 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=52.8
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEcc---------CCCCCHHHHHHHHHhhcCCCCceEEEEecCC-ChHHHHHHHhCCC
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEV---------MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD-SMGLVFKCLSKGA 92 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDl---------MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~-d~~~av~Am~aGA 92 (687)
...+.++|.+.+++ ..+|.+-+-+ -|.. ++++|++|++. -.+|++++-+.+ +.+.+.++++.|+
T Consensus 151 ~~t~~eea~~f~~~--tgvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~---~~iPlv~hGgSGi~~e~i~~~i~~Gi 224 (282)
T TIGR01859 151 ELADPDEAEQFVKE--TGVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKEL---TNIPLVLHGASGIPEEQIKKAIKLGI 224 (282)
T ss_pred ccCCHHHHHHHHHH--HCcCEEeeccCccccccCCCCcc-CHHHHHHHHHH---hCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 36699999999986 6799888542 1333 58999999887 369998886433 5678889999999
Q ss_pred CEEEeC
Q 005631 93 VDFLVK 98 (687)
Q Consensus 93 ~DYL~K 98 (687)
..+=+-
T Consensus 225 ~kiNv~ 230 (282)
T TIGR01859 225 AKINID 230 (282)
T ss_pred CEEEEC
Confidence 887553
No 468
>PRK06526 transposase; Provisional
Probab=36.19 E-value=18 Score=38.25 Aligned_cols=38 Identities=13% Similarity=-0.055 Sum_probs=25.1
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+...++++ .|++||||..+|++|-..--+.+...+-+.
T Consensus 96 ~~~~nlll-~Gp~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 96 TGKENVVF-LGPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred hcCceEEE-EeCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 34456777 799999999999988544333344433333
No 469
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.17 E-value=88 Score=30.42 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe--CCCCHHHHHHH
Q 005631 32 KILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--KPIRKNELKNL 108 (687)
Q Consensus 32 e~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~--KP~~~eeL~~~ 108 (687)
|.|.. .+|||||... .... ++.++|.+. .+|++++....+.....+.++.= -..+- |+-..++|...
T Consensus 63 E~ll~--l~PDlii~~~~~~~~---~~~~~l~~~----gIpvv~i~~~~~~~~~~~~i~~~-g~~~g~~~~~~a~~~i~~ 132 (186)
T cd01141 63 ELIVA--LKPDLVILYGGFQAQ---TILDKLEQL----GIPVLYVNEYPSPLGRAEWIKFA-AAFYGVGKEDKADEAFAQ 132 (186)
T ss_pred HHHhc--cCCCEEEEecCCCch---hHHHHHHHc----CCCEEEeCCCCChhhHHHHHHHH-HHHcCCchHHHHHHHHHH
Confidence 44444 6899999854 3221 567777654 58888886533333333332210 11122 44445555555
Q ss_pred HHHHHHH
Q 005631 109 WQHVWRR 115 (687)
Q Consensus 109 L~~alr~ 115 (687)
+++.+..
T Consensus 133 ~~~~~~~ 139 (186)
T cd01141 133 IAGRYRD 139 (186)
T ss_pred HHHHHHH
Confidence 5544433
No 470
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=36.05 E-value=2.6e+02 Score=31.07 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=55.3
Q ss_pred HHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEec----CCChHH
Q 005631 9 LLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSS----LDSMGL 83 (687)
Q Consensus 9 l~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa----~~d~~~ 83 (687)
+..+.+.. ++++|..++...+..+.+.+. ..+. +..|+ -+++ . .+++-+|.+.. ..-.+.
T Consensus 18 ~~al~~~~~~~eLvaV~d~~~erA~~~A~~-~gi~-~y~~~------eell----~---d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 18 LAAFAAAPERFELAGILAQGSERSRALAHR-LGVP-LYCEV------EELP----D---DIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred HHHHHhCCCCcEEEEEEcCCHHHHHHHHHH-hCCC-ccCCH------HHHh----c---CCCEEEEEeCCCCCCccHHHH
Confidence 33344444 688777777666655544430 2222 23332 1122 1 25676666622 234789
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+.+|+++|..=++.||+..+|....++.+-+
T Consensus 83 a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 83 ARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred HHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998777776665543
No 471
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.99 E-value=6e+02 Score=27.57 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEE-eCCHHHHH---HHHHhhCCCccEEEEcc--CCCCCHHHHHH-HHHhhcCCCCceEEE
Q 005631 2 MILLAMLLLLCFEIAVMKVITE-ATNGLQAW---KILEDLTNHIDLVLTEV--MPCLSGVALLS-KIMSHKTRKNLPVIM 74 (687)
Q Consensus 2 ~l~~r~ll~~lLe~~G~~~V~~-A~sg~eAL---e~L~~~~~~pDLVLlDl--MP~mdGleLL~-~Ir~~~~~p~iPVIv 74 (687)
++....++... +..+|-+... +.+.+.+. +..++ ..-.+||.-. .-...|++.+. .++.......+||.+
T Consensus 3 lv~~k~ll~~A-~~~~yaV~AfN~~n~e~~~avi~AAe~--~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l 79 (283)
T PRK07998 3 LVNGRILLDRI-QEKHVLAGAFNTTNLETTISILNAIER--SGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL 79 (283)
T ss_pred CCcHHHHHHHH-HHCCCEEEEEeeCCHHHHHHHHHHHHH--hCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34455666554 4456773221 33444443 33444 3444555433 11223444333 333222236899999
Q ss_pred EecCC-ChHHHHHHHhCCCCEEEeC--CCCHHHHHHHHHHHHHHHhc
Q 005631 75 MSSLD-SMGLVFKCLSKGAVDFLVK--PIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 75 mTa~~-d~~~av~Am~aGA~DYL~K--P~~~eeL~~~L~~alr~~~~ 118 (687)
-..|+ +.+.+.+|+++|......= -++.+|=....+++.+..+.
T Consensus 80 HLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~ 126 (283)
T PRK07998 80 HLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKS 126 (283)
T ss_pred ECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99988 6789999999999888873 24555555566666665543
No 472
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=35.92 E-value=3.1e+02 Score=27.81 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=51.9
Q ss_pred eCCHHHHHHHHHhhCCCccEEEEcc-CCC---------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHH---HHhC
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLTEV-MPC---------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK---CLSK 90 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLlDl-MP~---------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~---Am~a 90 (687)
-.+-.+.++.+.. ..+|.|++|+ -.. .+-.+++..++... .....+++=....+...+.+ ++..
T Consensus 7 p~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~-~~~~~~~VRvn~~~~~~~~~Dl~~l~~ 83 (221)
T PF03328_consen 7 PANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAAR-AAGSEIIVRVNSLDSPHIERDLEALDA 83 (221)
T ss_dssp ESTSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHT-TSSSEEEEE-SSTTCHHHHHHHHHHHT
T ss_pred eCCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccc-cccccceecCCCCCcchhhhhhhhccc
Confidence 4455666777766 7899999999 433 23335566665532 12345555555555556666 9999
Q ss_pred CCCEEEeCCC-CHHHHHHHHHH
Q 005631 91 GAVDFLVKPI-RKNELKNLWQH 111 (687)
Q Consensus 91 GA~DYL~KP~-~~eeL~~~L~~ 111 (687)
|+..+++-=+ +.++++..+..
T Consensus 84 g~~gI~lP~ves~~~~~~~~~~ 105 (221)
T PF03328_consen 84 GADGIVLPKVESAEDARQAVAA 105 (221)
T ss_dssp TSSEEEETT--SHHHHHHHHHH
T ss_pred CCCeeeccccCcHHHHHHHHHH
Confidence 9988776555 56676655543
No 473
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=35.81 E-value=1.2e+02 Score=32.11 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred HHHhCCCeEEEE---------eCCHHHHHHHHHhhCCCccEEEEcc-CCCC----------C---HHHHHHHHHhhcCCC
Q 005631 12 CFEIAVMKVITE---------ATNGLQAWKILEDLTNHIDLVLTEV-MPCL----------S---GVALLSKIMSHKTRK 68 (687)
Q Consensus 12 lLe~~G~~~V~~---------A~sg~eALe~L~~~~~~pDLVLlDl-MP~m----------d---GleLL~~Ir~~~~~p 68 (687)
+|...|..+|-. ..--.+|+++|.. .+||.+++++ ||-- + .+.+++..|.. +|
T Consensus 144 ~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~--~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~--f~ 219 (275)
T COG1856 144 LLKENGIRVVPHITIGLDFGKIHGEFKAIDILVN--YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKK--FP 219 (275)
T ss_pred HHHHcCceeceeEEEEeccCcccchHHHHHHHhc--CCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHh--CC
Confidence 456666664322 2345679999988 8999999999 8732 1 24555555655 67
Q ss_pred CceEEEEecCCC--hHHH--HHHHhCCCCEEEeCCCC
Q 005631 69 NLPVIMMSSLDS--MGLV--FKCLSKGAVDFLVKPIR 101 (687)
Q Consensus 69 ~iPVIvmTa~~d--~~~a--v~Am~aGA~DYL~KP~~ 101 (687)
+ ||++=..+.- ...- ..|..+| .|-|++|.+
T Consensus 220 ~-pv~iGCmrP~Ge~rvk~d~~av~~g-Vd~It~P~~ 254 (275)
T COG1856 220 N-PVSIGCMRPRGEWRVKLDKEAVLAG-VDRITFPPR 254 (275)
T ss_pred C-CeeEeecCcCchhHHHHHHHHHHcC-CceeecCCc
Confidence 8 7776544332 2222 2233344 566888854
No 474
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=35.71 E-value=20 Score=34.74 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=17.6
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+++ .|++|+||.++|+.|-..
T Consensus 4 i~l-~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 4 IVI-SGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEE-ECCCCCCHHHHHHHHHcc
Confidence 444 799999999999999764
No 475
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.66 E-value=2.3e+02 Score=29.83 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 51 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 51 ~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+.-|+.+++.+. ..+|||.. ... ...+.+..|...|+.+|-+.++|...|..++.
T Consensus 281 E~~~~~~~EAma-----~g~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 281 ESFGLAALEAMA-----CGVPVVAS-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CCCccHHHHHHH-----cCCCEEEe-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 344667777664 35788763 322 34556777888999999999999998887764
No 476
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.60 E-value=5.5e+02 Score=27.84 Aligned_cols=79 Identities=15% Similarity=-0.054 Sum_probs=51.0
Q ss_pred HHHHHHHhCC--CeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 8 LLLLCFEIAV--MKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 8 ll~~lLe~~G--~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
.+..+-+..+ ..+...+.+.+|+.+.+.. .+|+|+||-|.- -++-+.+.... ... +|..++--+.+.+.
T Consensus 183 ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~---e~l~~av~~~~--~~~-~leaSGGI~~~ni~ 253 (281)
T PRK06106 183 AIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTP---DTLREAVAIVA--GRA-ITEASGRITPETAP 253 (281)
T ss_pred HHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCH---HHHHHHHHHhC--CCc-eEEEECCCCHHHHH
Confidence 3344444443 2345689999999999864 799999997322 23333333221 233 37788888888888
Q ss_pred HHHhCCCCEE
Q 005631 86 KCLSKGAVDF 95 (687)
Q Consensus 86 ~Am~aGA~DY 95 (687)
+-...|++-+
T Consensus 254 ~yA~tGVD~I 263 (281)
T PRK06106 254 AIAASGVDLI 263 (281)
T ss_pred HHHhcCCCEE
Confidence 8888887543
No 477
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.57 E-value=15 Score=43.16 Aligned_cols=45 Identities=4% Similarity=-0.071 Sum_probs=0.0
Q ss_pred ccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHh
Q 005631 160 NGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 160 ~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
...|++|+.... ..+...+..-+-+..+|+ +|+.|+||.++|+++
T Consensus 14 ~f~diiGq~~~v-~~L~~~i~~~rl~ha~Lf-~Gp~GvGKTTlAr~l 58 (546)
T PRK14957 14 SFAEVAGQQHAL-NSLVHALETQKVHHAYLF-TGTRGVGKTTLGRLL 58 (546)
T ss_pred cHHHhcCcHHHH-HHHHHHHHcCCCCeEEEE-ECCCCCCHHHHHHHH
No 478
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=35.51 E-value=20 Score=39.06 Aligned_cols=29 Identities=10% Similarity=-0.068 Sum_probs=21.4
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+++.....+.| .|++|+||++++++|=-.
T Consensus 28 l~i~~Ge~~~i-vG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 28 MTLTEGEIRGL-VGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEECCCCEEEE-ECCCCCCHHHHHHHHHcc
Confidence 33445555666 699999999999999543
No 479
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=35.49 E-value=35 Score=40.53 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=22.5
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
++++...-++| +||||+||.++-|||=-
T Consensus 414 ~~v~~G~~llI-~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 414 FEVRPGERLLI-TGESGAGKTSLLRALAG 441 (604)
T ss_pred eeeCCCCEEEE-ECCCCCCHHHHHHHHhc
Confidence 33456666899 89999999999999843
No 480
>PRK04195 replication factor C large subunit; Provisional
Probab=35.48 E-value=20 Score=41.14 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=24.0
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++|| +|++||||.++|++|-..- +-+++-+|
T Consensus 40 ~~lLL-~GppG~GKTtla~ala~el---~~~~ieln 71 (482)
T PRK04195 40 KALLL-YGPPGVGKTSLAHALANDY---GWEVIELN 71 (482)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHc---CCCEEEEc
Confidence 34666 8999999999999994432 34667776
No 481
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=35.45 E-value=20 Score=40.00 Aligned_cols=43 Identities=7% Similarity=-0.070 Sum_probs=28.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCccc--CCCceecCChhhhhhhhhhhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEIT--GSRRVPVTAAKECQDHEERCE 234 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~--~~pFV~vn~~~~C~aipe~L~ 234 (687)
+++| .|++||||..+|++|-..-.+. +..++-++ |..+-..+.
T Consensus 138 ~l~l-~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----~~~~~~~~~ 182 (405)
T TIGR00362 138 PLFI-YGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----SEKFTNDFV 182 (405)
T ss_pred eEEE-ECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----HHHHHHHHH
Confidence 4667 8999999999999985432222 45677777 655443333
No 482
>PRK08185 hypothetical protein; Provisional
Probab=35.09 E-value=1.5e+02 Score=32.04 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred eCCHHHHHHHHHhhCCCccEEEE---------cc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCC-ChHHHHHHHhCC
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLT---------EV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD-SMGLVFKCLSKG 91 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLl---------Dl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~-d~~~av~Am~aG 91 (687)
.++.+||.+.++. ..+|.+-+ .. -|..+ +++|+.|++. -++|+++.-+.+ ..+.+.+|++.|
T Consensus 148 ~t~peea~~f~~~--TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~---~~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 148 YTDPEQAEDFVSR--TGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINER---VDIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCHHHHHHHHHh--hCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHh---hCCCEEEECCCCCCHHHHHHHHHCC
Q ss_pred C
Q 005631 92 A 92 (687)
Q Consensus 92 A 92 (687)
+
T Consensus 222 I 222 (283)
T PRK08185 222 V 222 (283)
T ss_pred C
No 483
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=23 Score=38.70 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=23.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+..|++ +|+.||||-|+|+|+- |+. +.-|+-|-
T Consensus 217 kpPKGVIl-yG~PGTGKTLLAKAVA-NqT--SATFlRvv 251 (440)
T KOG0726|consen 217 KPPKGVIL-YGEPGTGKTLLAKAVA-NQT--SATFLRVV 251 (440)
T ss_pred CCCCeeEE-eCCCCCchhHHHHHHh-ccc--chhhhhhh
Confidence 34444777 8999999999999984 332 22555543
No 484
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=35.00 E-value=21 Score=36.20 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=21.0
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+....-+.| .|++|+||++++++|--.
T Consensus 33 i~~Ge~~~i-~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 33 VKRGETIAL-IGESGSGKSTLLAILAGL 59 (228)
T ss_pred EcCCCEEEE-ECCCCCCHHHHHHHHHcC
Confidence 445555677 799999999999999543
No 485
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=34.97 E-value=1.8e+02 Score=30.24 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCcc-EEEEcc-CCCC---CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh---CCCCEEEe-
Q 005631 27 GLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS---KGAVDFLV- 97 (687)
Q Consensus 27 g~eALe~L~~~~~~pD-LVLlDl-MP~m---dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~---aGA~DYL~- 97 (687)
..+.++.+.+ ...+ |+++|+ .-++ -.+++++++++. ..+|||.=-+-.+.+.+.++++ .|++..++
T Consensus 148 ~~~~~~~l~~--~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~---~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 148 LWEVLERLDS--AGCSRYVVTDVTKDGTLTGPNLELLREVCAR---TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred HHHHHHHHHh--cCCCEEEEEeecCCCCccCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEe
Confidence 3555666665 4454 888888 4322 247888888876 5799998887888899888864 49988664
Q ss_pred -----CCCCHHHHHHH
Q 005631 98 -----KPIRKNELKNL 108 (687)
Q Consensus 98 -----KP~~~eeL~~~ 108 (687)
.++++++++..
T Consensus 223 ra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 223 KALYAGAFTLPEALAV 238 (241)
T ss_pred HHHHcCCCCHHHHHHH
Confidence 46677666544
No 486
>PF12846 AAA_10: AAA-like domain
Probab=34.90 E-value=20 Score=37.04 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=29.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKE 225 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~ 225 (687)
++| .|.||+||.++++.+=..--+.+.+.|.+|-..+
T Consensus 4 ~~i-~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 4 TLI-LGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred EEE-ECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 567 6999999999999887777777778888874434
No 487
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=34.82 E-value=50 Score=38.07 Aligned_cols=25 Identities=4% Similarity=0.014 Sum_probs=20.4
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
+....++++ .|.+||||.++|+.+-
T Consensus 191 L~~~~~iil-~GppGtGKT~lA~~la 215 (459)
T PRK11331 191 LTIKKNIIL-QGPPGVGKTFVARRLA 215 (459)
T ss_pred HhcCCCEEE-ECCCCCCHHHHHHHHH
Confidence 345667777 8999999999999874
No 488
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=34.81 E-value=18 Score=39.71 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhc-Cccc-CCCceecCChhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSN-AEIT-GSRRVPVTAAKECQDH 229 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~-S~R~-~~pFV~vn~~~~C~ai 229 (687)
.+..++| +|++||||.++++.+=.. ..+. .-+||.|| |...
T Consensus 54 ~~~~~lI-~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~ 96 (394)
T PRK00411 54 RPLNVLI-YGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQID 96 (394)
T ss_pred CCCeEEE-ECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcC
Confidence 3345777 899999999999977432 2222 35688888 7544
No 489
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=34.76 E-value=19 Score=39.33 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=21.0
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
+.+.....+.| .||||+||++++++|=-
T Consensus 37 l~i~~Ge~~~i-vG~sGsGKSTL~~~l~G 64 (330)
T PRK09473 37 FSLRAGETLGI-VGESGSGKSQTAFALMG 64 (330)
T ss_pred EEEcCCCEEEE-ECCCCchHHHHHHHHHc
Confidence 33445555666 69999999999999943
No 490
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=34.69 E-value=18 Score=41.75 Aligned_cols=53 Identities=21% Similarity=0.026 Sum_probs=37.4
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCccc-CCCceecCChhhhhhhhhhhhhh-hccCCcc
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEIT-GSRRVPVTAAKECQDHEERCENF-AKRSRDL 243 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~-~~pFV~vn~~~~C~aipe~L~ES-elFGh~l 243 (687)
..+|| .|++||||.+||.-+-.+.-+. +.+-+-|. +..-|+++.+. .-||-|+
T Consensus 32 s~~li-~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis----~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 32 RPTLV-SGTAGTGKTLFALQFLVNGIKRFDEPGVFVT----FEESPEDIIRNVASFGWDL 86 (509)
T ss_pred cEEEE-EeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE----ccCCHHHHHHHHHHcCCCH
Confidence 34777 8999999999998765555555 67777777 67777776654 2346554
No 491
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=34.65 E-value=20 Score=38.74 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=20.8
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
....+++| .|++|+||.++++++=.
T Consensus 130 ~~~~~ilI-~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 130 LARKNILV-VGGTGSGKTTLANALLA 154 (299)
T ss_pred HcCCeEEE-ECCCCCCHHHHHHHHHH
Confidence 45567888 89999999999998743
No 492
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.62 E-value=1.8e+02 Score=30.41 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=53.6
Q ss_pred eCCHHHHHHHHHhhCCCc-cEEEEcc-CCC---CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 24 ATNGLQAWKILEDLTNHI-DLVLTEV-MPC---LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~p-DLVLlDl-MP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
..+..+..+.+.. ..+ .|+++|+ -.+ ..-++++++|++. -.+||++--+-.+.+.+.+++..||.-.++=
T Consensus 29 ~~dp~~~a~~~~~--~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDE--EGADELVFLDITASSEGRTTMIDVVERTAET---VFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEcCCcccccChhhHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4578888888776 444 5888999 432 2345677888765 4789999999999999999999998887764
No 493
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=34.61 E-value=21 Score=36.15 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=20.5
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+....-+.| .|++|+||+++.++|=-.
T Consensus 23 i~~Ge~~~i-~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 23 IPKGEITAL-IGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EcCCCEEEE-ECCCCCCHHHHHHHHHhh
Confidence 344555666 799999999999998543
No 494
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=34.54 E-value=26 Score=37.08 Aligned_cols=35 Identities=9% Similarity=-0.056 Sum_probs=23.4
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..|+| +|++|+||.++.+++=..-.+....+|.|.
T Consensus 81 Glili-sG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 81 GIILV-TGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CEEEE-ECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 34666 899999999999976322222344566665
No 495
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.49 E-value=2.2e+02 Score=25.26 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 54 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 54 GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
-+.++..+++. .+.++||+... +........+.||+..+
T Consensus 76 n~~~~~~~r~~--~~~~~ii~~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 76 NLLIALLAREL--NPDIRIIARVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp HHHHHHHHHHH--TTTSEEEEEES--SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHH--CCCCeEEEEEC--CHHHHHHHHHCCcCEEE
Confidence 34555666655 46666665554 34455555567776554
No 496
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=34.42 E-value=20 Score=39.12 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=21.8
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+++.....+.| .||+|+||++++++|=-.
T Consensus 42 l~i~~Ge~~~l-vG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 42 LRLYEGETLGV-VGESGCGKSTFARAIIGL 70 (331)
T ss_pred EEEcCCCEEEE-ECCCCCCHHHHHHHHHCC
Confidence 33455555666 699999999999999544
No 497
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.39 E-value=21 Score=33.94 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=20.0
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
+.....+.| .|++|+||+++.++|-.
T Consensus 22 i~~g~~~~i-~G~nGsGKStll~~l~g 47 (157)
T cd00267 22 LKAGEIVAL-VGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EcCCCEEEE-ECCCCCCHHHHHHHHhC
Confidence 344445666 79999999999999943
No 498
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.39 E-value=3e+02 Score=28.27 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=55.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY 95 (687)
+.-.|....+.+++++.++.. ..--+=++++ |-.-..++.+++|++. ++++ +|=.-.--+.+.+.+|+++||. |
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al-~~gGi~~iEit~~tp~a~~~I~~l~~~--~~~~-~vGAGTVl~~e~a~~ai~aGA~-F 79 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARAL-AAGGLPAIEITLRTPAALDAIRAVAAE--VEEA-IVGAGTILNAKQFEDAAKAGSR-F 79 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHH--CCCC-EEeeEeCcCHHHHHHHHHcCCC-E
Confidence 333456677888888776541 1122336777 7777799999999876 4552 2222223468899999999985 7
Q ss_pred EeCCCCHHHHHH
Q 005631 96 LVKPIRKNELKN 107 (687)
Q Consensus 96 L~KP~~~eeL~~ 107 (687)
|+-|.-..+|..
T Consensus 80 ivSP~~~~~vi~ 91 (201)
T PRK06015 80 IVSPGTTQELLA 91 (201)
T ss_pred EECCCCCHHHHH
Confidence 777854444443
No 499
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.32 E-value=21 Score=36.26 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=20.5
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhh
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.+.....+.| .|++|+||+++.++|=
T Consensus 27 ~i~~Ge~~~l-~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 27 SVPKGEIFGI-IGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEcCCCEEEE-ECCCCCCHHHHHHHHh
Confidence 3455555667 7999999999999984
No 500
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=34.26 E-value=95 Score=38.72 Aligned_cols=12 Identities=25% Similarity=-0.175 Sum_probs=4.9
Q ss_pred cCCCCcccccCC
Q 005631 377 RSDSSAFSRYNT 388 (687)
Q Consensus 377 hS~~SAFsrY~~ 388 (687)
.+-+-+|=-||.
T Consensus 989 ~~lL~~~lypn~ 1000 (1282)
T KOG0921|consen 989 RSLLVMALYPNV 1000 (1282)
T ss_pred HHHHHhhcCCcc
Confidence 333444444443
Done!