Query 005631
Match_columns 687
No_of_seqs 446 out of 2066
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzd_A Transcriptional regulat 100.0 2.1E-30 7.3E-35 279.7 15.6 193 4-243 11-204 (368)
2 1ny5_A Transcriptional regulat 100.0 4.9E-30 1.7E-34 278.4 14.3 202 4-243 11-213 (387)
3 3to5_A CHEY homolog; alpha(5)b 99.9 7.6E-22 2.6E-26 184.7 13.9 110 4-115 23-133 (134)
4 3gl9_A Response regulator; bet 99.8 5.2E-18 1.8E-22 151.6 15.3 108 4-114 13-121 (122)
5 3t6k_A Response regulator rece 99.7 1.3E-17 4.5E-22 151.8 14.9 110 4-116 15-125 (136)
6 3f6p_A Transcriptional regulat 99.7 4.2E-17 1.4E-21 145.0 14.1 105 4-114 13-118 (120)
7 3h1g_A Chemotaxis protein CHEY 99.7 6.9E-17 2.4E-21 145.2 15.5 110 4-114 16-126 (129)
8 2lpm_A Two-component response 99.7 5.1E-19 1.7E-23 163.5 -0.4 100 5-113 20-120 (123)
9 2r25_B Osmosensing histidine p 99.7 1.1E-16 3.6E-21 145.2 14.9 111 4-115 13-127 (133)
10 2pl1_A Transcriptional regulat 99.7 3.5E-16 1.2E-20 137.6 17.1 107 5-116 12-119 (121)
11 3crn_A Response regulator rece 99.7 3.4E-16 1.2E-20 141.2 17.0 108 4-116 14-122 (132)
12 3rqi_A Response regulator prot 99.7 6.4E-17 2.2E-21 155.4 12.3 109 4-117 18-127 (184)
13 3gt7_A Sensor protein; structu 99.7 2.7E-16 9.2E-21 146.1 15.9 112 4-118 18-130 (154)
14 1jbe_A Chemotaxis protein CHEY 99.7 3.6E-16 1.2E-20 139.1 16.0 111 4-116 15-126 (128)
15 3eq2_A Probable two-component 99.7 2.2E-17 7.6E-22 177.5 9.3 163 4-171 16-218 (394)
16 1tmy_A CHEY protein, TMY; chem 99.7 2.6E-16 8.9E-21 138.5 14.3 106 4-113 13-119 (120)
17 1dbw_A Transcriptional regulat 99.7 3.2E-16 1.1E-20 139.6 14.9 106 5-115 15-121 (126)
18 3kht_A Response regulator; PSI 99.7 7.4E-16 2.5E-20 140.4 16.4 115 4-120 16-133 (144)
19 1zgz_A Torcad operon transcrip 99.7 8.9E-16 3.1E-20 135.4 16.4 107 4-116 13-120 (122)
20 3hv2_A Response regulator/HD d 99.7 5.4E-16 1.9E-20 143.3 15.6 111 4-119 25-137 (153)
21 1p6q_A CHEY2; chemotaxis, sign 99.7 2.1E-16 7.3E-21 140.8 12.0 110 4-115 17-127 (129)
22 3m6m_D Sensory/regulatory prot 99.7 6E-16 2.1E-20 142.2 15.4 109 4-115 25-136 (143)
23 3heb_A Response regulator rece 99.7 1.3E-15 4.4E-20 140.4 17.5 114 4-120 15-140 (152)
24 3cfy_A Putative LUXO repressor 99.7 6.9E-16 2.3E-20 140.5 15.4 109 5-118 16-125 (137)
25 3luf_A Two-component system re 99.7 5.4E-16 1.8E-20 158.4 16.2 112 5-119 136-249 (259)
26 1xhf_A DYE resistance, aerobic 99.7 1.1E-15 3.8E-20 135.0 16.1 107 4-116 14-121 (123)
27 3grc_A Sensor protein, kinase; 99.7 2.9E-16 9.9E-21 142.2 12.5 112 4-118 17-130 (140)
28 1srr_A SPO0F, sporulation resp 99.7 5.9E-16 2E-20 137.3 14.2 106 4-114 14-120 (124)
29 3jte_A Response regulator rece 99.7 1.2E-15 4.1E-20 138.6 16.5 114 4-120 14-128 (143)
30 1mb3_A Cell division response 99.7 4.6E-16 1.6E-20 137.4 13.3 108 4-114 12-120 (124)
31 2a9o_A Response regulator; ess 99.7 7.6E-16 2.6E-20 134.9 14.6 106 4-115 12-118 (120)
32 2qzj_A Two-component response 99.7 9.6E-16 3.3E-20 139.4 15.8 109 4-118 15-124 (136)
33 1i3c_A Response regulator RCP1 99.7 1.3E-15 4.6E-20 140.3 16.6 114 4-117 19-139 (149)
34 3i42_A Response regulator rece 99.7 3.7E-16 1.3E-20 139.2 11.8 109 4-116 14-123 (127)
35 3b2n_A Uncharacterized protein 99.7 1.3E-15 4.6E-20 137.4 15.6 108 5-116 15-124 (133)
36 3kto_A Response regulator rece 99.7 3E-16 1E-20 142.2 11.4 110 4-118 17-129 (136)
37 3cnb_A DNA-binding response re 99.7 1.8E-15 6.1E-20 136.6 16.4 112 4-117 19-132 (143)
38 3nhm_A Response regulator; pro 99.7 1E-15 3.6E-20 137.0 14.2 109 5-118 16-125 (133)
39 3n0r_A Response regulator; sig 99.7 1.1E-16 3.8E-21 166.7 9.0 108 4-118 171-280 (286)
40 3r0j_A Possible two component 99.7 1.1E-15 3.8E-20 153.6 16.0 109 4-117 34-143 (250)
41 1dz3_A Stage 0 sporulation pro 99.7 1E-15 3.4E-20 137.2 14.0 109 4-115 13-123 (130)
42 3hdg_A Uncharacterized protein 99.7 1.1E-15 3.7E-20 137.9 14.2 110 4-118 18-128 (137)
43 3eod_A Protein HNR; response r 99.7 8.3E-16 2.9E-20 137.4 13.2 107 4-115 18-126 (130)
44 1zh2_A KDP operon transcriptio 99.6 1.7E-15 5.8E-20 132.9 14.2 106 5-116 13-119 (121)
45 3hzh_A Chemotaxis response reg 99.6 1E-15 3.4E-20 142.6 13.4 107 4-114 47-156 (157)
46 1mvo_A PHOP response regulator 99.6 1.3E-15 4.5E-20 136.9 13.7 107 5-116 15-122 (136)
47 2zay_A Response regulator rece 99.6 1.3E-15 4.4E-20 139.1 13.7 111 6-119 21-132 (147)
48 3hdv_A Response regulator; PSI 99.6 3.3E-15 1.1E-19 134.6 16.1 109 4-116 18-128 (136)
49 3f6c_A Positive transcription 99.6 5.4E-16 1.9E-20 139.0 10.7 109 4-116 12-121 (134)
50 3c3m_A Response regulator rece 99.6 1.4E-15 4.9E-20 138.1 13.5 109 4-115 14-123 (138)
51 3mm4_A Histidine kinase homolo 99.6 9.3E-16 3.2E-20 150.7 12.8 113 4-118 72-199 (206)
52 3cwo_X Beta/alpha-barrel prote 99.6 9.2E-17 3.2E-21 158.1 5.6 186 20-242 7-198 (237)
53 4e7p_A Response regulator; DNA 99.6 3.3E-15 1.1E-19 137.6 15.4 109 4-116 31-141 (150)
54 2jba_A Phosphate regulon trans 99.6 4E-16 1.4E-20 138.4 8.9 109 4-115 13-122 (127)
55 3snk_A Response regulator CHEY 99.6 2.2E-16 7.5E-21 142.7 6.8 107 4-115 25-133 (135)
56 3eul_A Possible nitrate/nitrit 99.6 4.1E-15 1.4E-19 137.0 15.4 109 4-116 26-136 (152)
57 1k68_A Phytochrome response re 99.6 6.8E-15 2.3E-19 131.7 16.2 115 4-119 13-135 (140)
58 3lua_A Response regulator rece 99.6 9.3E-16 3.2E-20 139.1 10.6 112 4-117 15-129 (140)
59 3h5i_A Response regulator/sens 99.6 1.6E-15 5.4E-20 138.1 12.0 111 4-119 16-128 (140)
60 3cu5_A Two component transcrip 99.6 1.5E-15 5.1E-20 138.9 11.7 110 5-118 14-126 (141)
61 3cg4_A Response regulator rece 99.6 1.3E-15 4.3E-20 138.0 11.1 114 4-120 18-132 (142)
62 2ayx_A Sensor kinase protein R 99.6 1.6E-15 5.6E-20 154.0 13.0 110 4-118 140-250 (254)
63 1k66_A Phytochrome response re 99.6 9.2E-15 3.2E-19 132.5 16.6 115 4-119 17-142 (149)
64 1a04_A Nitrate/nitrite respons 99.6 5.3E-15 1.8E-19 144.5 15.7 108 4-115 16-125 (215)
65 3lte_A Response regulator; str 99.6 7.6E-15 2.6E-19 131.2 15.3 108 4-115 17-125 (132)
66 4dad_A Putative pilus assembly 99.6 1.3E-15 4.6E-20 139.0 10.5 109 4-116 31-142 (146)
67 1yio_A Response regulatory pro 99.6 2E-15 7E-20 146.4 12.2 108 4-116 15-123 (208)
68 3n53_A Response regulator rece 99.6 1.4E-15 4.9E-20 137.9 10.3 111 4-118 14-125 (140)
69 3cg0_A Response regulator rece 99.6 8.2E-15 2.8E-19 132.0 15.2 111 4-119 20-132 (140)
70 2rjn_A Response regulator rece 99.6 9.1E-15 3.1E-19 134.9 15.8 110 4-118 18-129 (154)
71 3kcn_A Adenylate cyclase homol 99.6 9E-15 3.1E-19 134.8 15.1 108 5-118 16-126 (151)
72 3ilh_A Two component response 99.6 1.1E-14 3.8E-19 131.8 15.4 111 4-115 20-139 (146)
73 1w25_A Stalked-cell differenti 99.6 5.2E-15 1.8E-19 161.6 15.6 109 5-116 13-122 (459)
74 2jk1_A HUPR, hydrogenase trans 99.6 1.1E-14 3.7E-19 132.2 15.1 107 5-117 13-121 (139)
75 3a10_A Response regulator; pho 99.6 3.5E-15 1.2E-19 130.5 11.2 103 4-113 12-115 (116)
76 1s8n_A Putative antiterminator 99.6 4.3E-15 1.5E-19 144.3 13.0 109 4-117 24-133 (205)
77 1qkk_A DCTD, C4-dicarboxylate 99.6 8.4E-15 2.9E-19 135.3 14.2 110 4-118 14-124 (155)
78 2qr3_A Two-component system re 99.6 9.6E-15 3.3E-19 131.6 14.0 108 4-116 14-127 (140)
79 1kgs_A DRRD, DNA binding respo 99.6 8.3E-15 2.8E-19 143.5 14.6 109 4-117 13-122 (225)
80 3q9s_A DNA-binding response re 99.6 5E-15 1.7E-19 149.9 13.2 106 4-115 48-154 (249)
81 3cz5_A Two-component response 99.6 1E-14 3.5E-19 134.4 14.0 108 4-115 16-125 (153)
82 1dcf_A ETR1 protein; beta-alph 99.6 1.5E-14 5.1E-19 130.5 14.1 107 4-114 18-128 (136)
83 2qv0_A Protein MRKE; structura 99.6 2.7E-14 9.4E-19 129.6 15.7 109 5-119 21-131 (143)
84 2qxy_A Response regulator; reg 99.6 1.3E-14 4.5E-19 131.5 13.2 109 4-117 15-123 (142)
85 2gkg_A Response regulator homo 99.6 1.1E-14 3.7E-19 128.2 12.3 106 5-114 17-124 (127)
86 1ys7_A Transcriptional regulat 99.6 9.7E-15 3.3E-19 143.8 12.5 109 4-117 18-127 (233)
87 1a2o_A CHEB methylesterase; ba 99.6 1.7E-14 5.8E-19 154.7 14.2 162 4-220 14-188 (349)
88 3bre_A Probable two-component 99.6 1.4E-14 4.7E-19 152.5 13.2 107 5-114 30-138 (358)
89 3sy8_A ROCR; TIM barrel phosph 99.5 1.9E-15 6.6E-20 163.6 5.7 109 4-117 14-130 (400)
90 3kyj_B CHEY6 protein, putative 99.5 1.8E-14 6.3E-19 131.5 11.1 102 4-110 24-130 (145)
91 2qvg_A Two component response 99.5 7.5E-14 2.6E-18 126.4 14.2 108 4-112 18-132 (143)
92 3c3w_A Two component transcrip 99.5 6.4E-15 2.2E-19 146.0 7.7 110 4-117 12-123 (225)
93 2oqr_A Sensory transduction pr 99.5 2.3E-14 7.7E-19 141.1 11.2 106 4-115 15-121 (230)
94 2qsj_A DNA-binding response re 99.5 3.8E-14 1.3E-18 130.5 11.4 109 5-116 15-125 (154)
95 3eqz_A Response regulator; str 99.5 1.7E-14 5.7E-19 128.9 8.6 106 4-115 14-125 (135)
96 3klo_A Transcriptional regulat 99.5 1.1E-14 3.7E-19 143.9 7.7 107 5-115 19-129 (225)
97 2rdm_A Response regulator rece 99.5 1.4E-13 4.6E-18 122.8 14.1 106 4-116 16-124 (132)
98 3t8y_A CHEB, chemotaxis respon 99.5 1.3E-13 4.4E-18 129.6 14.6 104 5-113 37-153 (164)
99 2gwr_A DNA-binding response re 99.5 3.9E-14 1.3E-18 141.1 11.5 106 4-115 16-122 (238)
100 1dc7_A NTRC, nitrogen regulati 99.5 1.1E-15 3.7E-20 134.4 -0.3 107 5-116 15-122 (124)
101 2j48_A Two-component sensor ki 99.5 4.9E-14 1.7E-18 121.7 10.0 103 5-113 13-116 (119)
102 3c97_A Signal transduction his 99.5 8.8E-14 3E-18 126.3 11.0 106 4-115 21-130 (140)
103 1p2f_A Response regulator; DRR 99.5 1.7E-13 5.7E-18 134.3 13.1 105 4-116 13-118 (220)
104 2pln_A HP1043, response regula 99.5 4.4E-13 1.5E-17 120.9 14.6 104 4-116 29-134 (137)
105 1qo0_D AMIR; binding protein, 99.4 1.7E-13 5.8E-18 132.1 9.1 102 5-116 24-126 (196)
106 2hqr_A Putative transcriptiona 99.4 1.9E-12 6.6E-17 126.9 13.0 104 4-115 11-115 (223)
107 2b4a_A BH3024; flavodoxin-like 99.4 8E-13 2.7E-17 119.4 7.6 103 4-114 26-130 (138)
108 2vyc_A Biodegradative arginine 99.3 2.2E-12 7.4E-17 151.3 9.0 107 6-117 21-135 (755)
109 3luf_A Two-component system re 99.3 3.2E-12 1.1E-16 130.4 8.0 90 5-102 16-107 (259)
110 1ojl_A Transcriptional regulat 99.0 5.7E-11 1.9E-15 124.6 2.8 75 163-242 3-77 (304)
111 1w25_A Stalked-cell differenti 98.7 1.6E-07 5.4E-12 102.4 15.8 101 11-116 170-271 (459)
112 2bjv_A PSP operon transcriptio 98.6 1.4E-08 4.8E-13 102.9 3.4 75 163-242 7-81 (265)
113 3n70_A Transport activator; si 98.5 2.3E-08 7.8E-13 93.1 2.5 64 163-232 2-65 (145)
114 3hu3_A Transitional endoplasmi 98.4 9.6E-11 3.3E-15 131.0 -21.3 176 41-234 79-279 (489)
115 3co5_A Putative two-component 98.1 6.1E-07 2.1E-11 83.3 1.3 62 163-233 5-66 (143)
116 1qvr_A CLPB protein; coiled co 97.5 7.5E-06 2.6E-10 97.1 -1.5 50 187-241 590-639 (854)
117 4fcw_A Chaperone protein CLPB; 97.1 0.00011 3.8E-09 75.3 0.7 53 186-243 48-100 (311)
118 3n75_A LDC, lysine decarboxyla 97.0 0.00083 2.8E-08 78.5 8.1 100 10-116 23-124 (715)
119 3hws_A ATP-dependent CLP prote 96.5 0.00056 1.9E-08 72.5 0.9 48 184-243 50-97 (363)
120 3cwo_X Beta/alpha-barrel prote 96.2 0.0077 2.6E-07 58.4 7.1 81 26-110 131-221 (237)
121 3q7r_A Transcriptional regulat 96.1 0.014 4.9E-07 51.8 7.4 69 39-116 49-119 (121)
122 3pxi_A Negative regulator of g 96.0 0.0016 5.6E-08 75.9 1.5 45 187-236 523-567 (758)
123 1hqc_A RUVB; extended AAA-ATPa 95.9 0.0022 7.5E-08 66.0 1.7 41 183-231 36-76 (324)
124 3pfi_A Holliday junction ATP-d 95.8 0.0022 7.5E-08 66.7 1.4 62 161-230 28-92 (338)
125 1g8p_A Magnesium-chelatase 38 95.4 0.0029 1E-07 65.6 0.4 45 182-234 42-90 (350)
126 2w58_A DNAI, primosome compone 95.2 0.0054 1.9E-07 58.9 1.4 45 186-235 55-99 (202)
127 1r6b_X CLPA protein; AAA+, N-t 95.2 0.0049 1.7E-07 71.8 1.2 48 187-242 490-537 (758)
128 3cf0_A Transitional endoplasmi 95.1 0.0078 2.7E-07 62.3 2.5 42 183-232 47-88 (301)
129 1d2n_A N-ethylmaleimide-sensit 95.0 0.011 3.8E-07 59.7 3.2 35 183-221 62-96 (272)
130 1um8_A ATP-dependent CLP prote 94.9 0.01 3.5E-07 63.0 2.9 49 183-243 70-118 (376)
131 2r62_A Cell division protease 94.8 0.016 5.4E-07 58.1 3.7 42 183-232 42-83 (268)
132 3d8b_A Fidgetin-like protein 1 94.7 0.011 3.7E-07 62.8 2.2 41 183-231 115-155 (357)
133 3ogl_Q JAZ1 incomplete degron 94.3 0.021 7.2E-07 36.6 2.0 19 629-647 3-21 (21)
134 3vfd_A Spastin; ATPase, microt 94.2 0.0099 3.4E-07 63.6 0.6 41 184-232 147-187 (389)
135 1wv2_A Thiazole moeity, thiazo 94.2 0.25 8.4E-06 50.9 10.8 99 9-114 127-237 (265)
136 1lv7_A FTSH; alpha/beta domain 93.8 0.018 6.3E-07 57.5 1.5 40 184-231 44-83 (257)
137 1ofh_A ATP-dependent HSL prote 93.7 0.023 7.8E-07 57.6 2.1 40 184-231 49-88 (310)
138 1l8q_A Chromosomal replication 93.6 0.023 7.7E-07 58.9 1.9 49 184-237 36-84 (324)
139 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.025 8.6E-07 56.0 2.0 40 183-230 37-76 (262)
140 3b9p_A CG5977-PA, isoform A; A 93.5 0.025 8.4E-07 57.6 2.0 39 184-230 53-91 (297)
141 3m6a_A ATP-dependent protease 92.8 0.024 8.2E-07 63.9 0.8 46 187-243 110-155 (543)
142 3bos_A Putative DNA replicatio 92.8 0.054 1.9E-06 52.2 3.1 46 183-233 50-95 (242)
143 3nbx_X ATPase RAVA; AAA+ ATPas 92.7 0.034 1.1E-06 62.3 1.7 49 182-241 38-87 (500)
144 3syl_A Protein CBBX; photosynt 92.7 0.059 2E-06 54.9 3.4 40 186-230 68-111 (309)
145 3ogk_Q JAZ1 incomplete degron 92.2 0.036 1.2E-06 36.0 0.7 19 632-650 1-19 (22)
146 2yxb_A Coenzyme B12-dependent 92.2 2.2 7.4E-05 40.4 13.4 107 6-116 35-146 (161)
147 2ce7_A Cell division protein F 91.8 0.064 2.2E-06 59.8 2.5 41 184-232 48-88 (476)
148 3eie_A Vacuolar protein sortin 91.5 0.068 2.3E-06 55.6 2.2 39 185-231 51-89 (322)
149 3pvs_A Replication-associated 91.4 0.067 2.3E-06 58.9 2.2 34 184-221 49-82 (447)
150 3f9v_A Minichromosome maintena 91.3 0.048 1.6E-06 62.3 0.9 50 183-237 325-375 (595)
151 3pxg_A Negative regulator of g 91.2 0.061 2.1E-06 59.3 1.5 38 183-221 199-243 (468)
152 1ypw_A Transitional endoplasmi 90.9 0.13 4.3E-06 60.9 4.0 65 159-231 201-276 (806)
153 2p65_A Hypothetical protein PF 90.8 0.071 2.4E-06 49.1 1.4 42 183-229 41-89 (187)
154 2v1u_A Cell division control p 90.8 0.061 2.1E-06 55.9 1.0 43 183-230 42-90 (387)
155 1jbk_A CLPB protein; beta barr 90.6 0.079 2.7E-06 48.7 1.6 42 183-229 41-89 (195)
156 2qp9_X Vacuolar protein sortin 90.6 0.079 2.7E-06 56.2 1.7 39 185-231 84-122 (355)
157 3uk6_A RUVB-like 2; hexameric 90.5 0.078 2.7E-06 55.4 1.5 38 186-229 71-108 (368)
158 2htm_A Thiazole biosynthesis p 90.5 0.62 2.1E-05 48.1 8.0 99 10-114 117-228 (268)
159 3h4m_A Proteasome-activating n 90.1 0.078 2.7E-06 53.4 1.1 40 183-230 49-88 (285)
160 2dhr_A FTSH; AAA+ protein, hex 89.6 0.14 4.9E-06 57.2 2.8 39 185-231 64-102 (499)
161 1ccw_A Protein (glutamate muta 89.3 4.9 0.00017 36.8 12.6 103 6-112 20-133 (137)
162 1xwi_A SKD1 protein; VPS4B, AA 89.2 0.11 3.8E-06 54.3 1.4 33 186-221 46-78 (322)
163 2zan_A Vacuolar protein sortin 89.1 0.13 4.5E-06 56.3 2.0 38 185-229 167-204 (444)
164 3t15_A Ribulose bisphosphate c 88.8 0.12 4.1E-06 53.3 1.3 39 185-231 36-74 (293)
165 3q58_A N-acetylmannosamine-6-p 88.3 2.2 7.5E-05 42.7 10.2 83 8-98 121-210 (229)
166 2qby_B CDC6 homolog 3, cell di 87.5 0.13 4.5E-06 53.6 0.7 42 184-230 44-93 (384)
167 3k1j_A LON protease, ATP-depen 86.9 0.22 7.4E-06 56.7 2.1 42 179-221 54-95 (604)
168 3igs_A N-acetylmannosamine-6-p 86.7 3.1 0.00011 41.6 10.2 83 8-98 121-210 (232)
169 2z4s_A Chromosomal replication 86.3 0.24 8.3E-06 54.1 1.9 47 185-236 130-178 (440)
170 1iy2_A ATP-dependent metallopr 86.2 0.27 9.4E-06 49.6 2.2 38 186-231 74-111 (278)
171 1xi3_A Thiamine phosphate pyro 85.9 8.5 0.00029 36.8 12.6 75 16-97 107-189 (215)
172 2ekc_A AQ_1548, tryptophan syn 85.6 2.4 8.2E-05 43.1 8.9 83 25-111 28-142 (262)
173 2qgz_A Helicase loader, putati 85.5 0.25 8.6E-06 51.4 1.5 45 185-234 152-197 (308)
174 1yad_A Regulatory protein TENI 85.3 12 0.00042 36.3 13.6 74 17-97 110-191 (221)
175 1ixz_A ATP-dependent metallopr 85.1 0.33 1.1E-05 48.1 2.1 37 186-230 50-86 (254)
176 1fnn_A CDC6P, cell division co 83.9 0.38 1.3E-05 50.0 2.0 39 187-230 46-85 (389)
177 2r44_A Uncharacterized protein 83.8 0.21 7.2E-06 51.6 0.0 34 184-221 45-78 (331)
178 2chg_A Replication factor C sm 83.7 0.4 1.4E-05 44.9 1.9 35 186-221 39-75 (226)
179 3pxi_A Negative regulator of g 83.5 0.38 1.3E-05 56.0 1.9 38 183-221 199-243 (758)
180 2qby_A CDC6 homolog 1, cell di 83.1 0.32 1.1E-05 50.2 1.1 43 183-230 43-88 (386)
181 3vnd_A TSA, tryptophan synthas 82.9 2.1 7.2E-05 44.0 7.0 79 28-110 35-142 (267)
182 1geq_A Tryptophan synthase alp 81.6 3.8 0.00013 40.6 8.2 73 30-108 24-125 (248)
183 3u61_B DNA polymerase accessor 81.4 0.53 1.8E-05 48.3 2.0 39 186-232 49-87 (324)
184 2c9o_A RUVB-like 1; hexameric 80.9 0.55 1.9E-05 51.4 1.9 39 186-230 64-102 (456)
185 1r6b_X CLPA protein; AAA+, N-t 80.9 0.46 1.6E-05 55.1 1.4 27 183-210 205-231 (758)
186 1sxj_A Activator 1 95 kDa subu 80.8 0.62 2.1E-05 51.8 2.4 38 186-231 78-115 (516)
187 1qop_A Tryptophan synthase alp 79.8 3.7 0.00013 41.8 7.6 77 31-111 37-142 (268)
188 3bo9_A Putative nitroalkan dio 79.2 10 0.00035 39.6 11.0 79 13-97 120-204 (326)
189 3qja_A IGPS, indole-3-glycerol 79.2 13 0.00044 38.1 11.5 81 13-98 158-242 (272)
190 2chq_A Replication factor C sm 78.9 0.48 1.7E-05 47.8 0.6 34 187-221 40-75 (319)
191 2gjl_A Hypothetical protein PA 78.9 15 0.0005 38.2 12.0 79 13-97 114-200 (328)
192 4b4t_H 26S protease regulatory 78.5 0.7 2.4E-05 51.3 1.8 39 183-229 241-279 (467)
193 1sxj_D Activator 1 41 kDa subu 77.7 0.97 3.3E-05 46.4 2.5 34 187-221 60-96 (353)
194 1xrs_B D-lysine 5,6-aminomutas 77.5 14 0.00049 37.8 11.1 98 13-115 152-258 (262)
195 3o63_A Probable thiamine-phosp 77.3 21 0.00071 36.0 12.2 92 17-113 135-239 (243)
196 1xm3_A Thiazole biosynthesis p 77.0 8.2 0.00028 39.2 9.2 76 17-98 126-207 (264)
197 2ayx_A Sensor kinase protein R 76.3 1.9 6.5E-05 42.8 4.1 82 4-113 22-104 (254)
198 1y0e_A Putative N-acetylmannos 75.7 21 0.00072 34.4 11.4 86 7-98 108-204 (223)
199 2i2x_B MTAC, methyltransferase 75.6 20 0.00067 36.2 11.5 98 6-113 140-242 (258)
200 3tsm_A IGPS, indole-3-glycerol 75.6 16 0.00053 37.7 10.8 81 13-97 165-248 (272)
201 3kp1_A D-ornithine aminomutase 75.5 9.6 0.00033 43.9 9.8 101 10-115 627-735 (763)
202 2xij_A Methylmalonyl-COA mutas 75.4 20 0.00068 42.1 12.8 108 6-117 621-733 (762)
203 4b4t_M 26S protease regulatory 75.2 0.95 3.3E-05 49.8 1.7 35 183-221 213-247 (434)
204 4b4t_J 26S protease regulatory 75.1 0.99 3.4E-05 49.3 1.8 35 183-221 180-214 (405)
205 1h1y_A D-ribulose-5-phosphate 75.1 21 0.00072 35.0 11.4 79 14-97 110-200 (228)
206 2v82_A 2-dehydro-3-deoxy-6-pho 75.1 14 0.00049 35.5 10.0 80 12-98 96-176 (212)
207 3nav_A Tryptophan synthase alp 75.1 5.2 0.00018 41.2 7.1 81 25-109 31-143 (271)
208 1ujp_A Tryptophan synthase alp 75.0 4.3 0.00015 41.7 6.5 81 25-111 27-139 (271)
209 4b4t_L 26S protease subunit RP 74.8 0.97 3.3E-05 49.8 1.6 35 183-221 213-247 (437)
210 3bw2_A 2-nitropropane dioxygen 74.3 28 0.00097 36.7 12.9 77 15-97 143-236 (369)
211 1ka9_F Imidazole glycerol phos 74.0 17 0.0006 35.7 10.5 78 27-109 154-242 (252)
212 2z6i_A Trans-2-enoyl-ACP reduc 73.4 22 0.00074 37.1 11.5 78 14-97 107-190 (332)
213 3ec2_A DNA replication protein 73.2 1.3 4.4E-05 41.4 1.8 44 185-233 38-82 (180)
214 1req_A Methylmalonyl-COA mutas 73.2 19 0.00064 42.1 11.8 106 6-115 613-723 (727)
215 4b4t_K 26S protease regulatory 73.1 1.1 3.9E-05 49.1 1.6 35 183-221 204-238 (428)
216 3f4w_A Putative hexulose 6 pho 72.4 13 0.00046 35.5 9.0 97 13-114 99-208 (211)
217 1h5y_A HISF; histidine biosynt 71.1 22 0.00074 34.5 10.3 79 26-109 155-244 (253)
218 3ezx_A MMCP 1, monomethylamine 71.0 8 0.00027 38.2 7.1 87 6-97 109-202 (215)
219 4b4t_I 26S protease regulatory 69.3 1.5 5.1E-05 48.3 1.5 35 183-221 214-248 (437)
220 1y80_A Predicted cobalamin bin 69.1 11 0.00039 36.5 7.7 86 7-97 106-196 (210)
221 2tps_A Protein (thiamin phosph 68.4 40 0.0014 32.4 11.5 69 23-97 122-199 (227)
222 3ffs_A Inosine-5-monophosphate 68.3 45 0.0016 36.1 12.9 87 8-97 175-274 (400)
223 1rd5_A Tryptophan synthase alp 67.9 6.6 0.00023 39.5 5.8 74 31-110 38-137 (262)
224 1vzw_A Phosphoribosyl isomeras 67.7 17 0.00059 35.7 8.8 79 26-109 147-239 (244)
225 4adt_A Pyridoxine biosynthetic 67.7 44 0.0015 34.7 12.2 93 16-114 124-259 (297)
226 3inp_A D-ribulose-phosphate 3- 67.4 11 0.00037 38.3 7.3 83 26-112 41-130 (246)
227 1njg_A DNA polymerase III subu 67.4 2 6.9E-05 40.4 1.8 26 185-211 45-70 (250)
228 3lw7_A Adenylate kinase relate 67.4 1.4 4.8E-05 39.8 0.6 26 191-220 6-31 (179)
229 1iqp_A RFCS; clamp loader, ext 67.2 0.96 3.3E-05 45.7 -0.6 34 187-221 48-83 (327)
230 3cf2_A TER ATPase, transitiona 66.5 2.1 7.1E-05 50.7 2.0 39 184-230 237-275 (806)
231 1qvr_A CLPB protein; coiled co 66.4 1.7 5.7E-05 51.4 1.2 43 183-230 189-238 (854)
232 1ypw_A Transitional endoplasmi 65.9 2.2 7.4E-05 50.4 2.0 38 185-230 511-548 (806)
233 2w6r_A Imidazole glycerol phos 65.6 21 0.0007 35.5 9.0 68 26-98 157-229 (266)
234 4e38_A Keto-hydroxyglutarate-a 64.0 18 0.00061 36.4 8.1 90 12-106 30-120 (232)
235 1qo2_A Molecule: N-((5-phospho 63.9 46 0.0016 32.6 11.1 77 26-108 145-239 (241)
236 1qhx_A CPT, protein (chloramph 63.5 2.3 7.9E-05 39.2 1.3 30 188-221 6-35 (178)
237 1jr3_A DNA polymerase III subu 63.5 2.7 9.1E-05 43.4 2.0 26 184-210 37-62 (373)
238 1wa3_A 2-keto-3-deoxy-6-phosph 63.3 39 0.0013 32.1 10.2 92 14-113 101-197 (205)
239 1eep_A Inosine 5'-monophosphat 63.1 36 0.0012 36.4 10.9 87 8-97 184-284 (404)
240 4eun_A Thermoresistant glucoki 63.1 2.6 8.9E-05 40.2 1.7 22 185-207 29-50 (200)
241 3f8t_A Predicted ATPase involv 62.9 1.5 5.3E-05 48.9 0.0 35 183-221 237-272 (506)
242 2x8a_A Nuclear valosin-contain 62.9 2.4 8.3E-05 43.1 1.5 31 187-221 46-76 (274)
243 1ka9_F Imidazole glycerol phos 62.9 26 0.00089 34.4 9.1 68 25-97 31-103 (252)
244 2p10_A MLL9387 protein; putati 62.1 97 0.0033 32.1 13.2 84 11-99 157-260 (286)
245 1ep3_A Dihydroorotate dehydrog 61.6 58 0.002 32.9 11.7 104 6-114 153-292 (311)
246 1geq_A Tryptophan synthase alp 61.5 50 0.0017 32.4 10.8 80 12-98 128-220 (248)
247 1yxy_A Putative N-acetylmannos 61.0 47 0.0016 32.3 10.4 85 7-98 122-215 (234)
248 3o07_A Pyridoxine biosynthesis 60.8 19 0.00065 37.5 7.6 94 17-116 115-252 (291)
249 2yw3_A 4-hydroxy-2-oxoglutarat 60.7 76 0.0026 30.8 11.8 92 16-115 103-200 (207)
250 3kts_A Glycerol uptake operon 60.4 14 0.00049 36.2 6.4 79 11-97 95-178 (192)
251 1tqj_A Ribulose-phosphate 3-ep 60.1 21 0.00072 35.3 7.8 82 25-112 17-108 (230)
252 1kag_A SKI, shikimate kinase I 60.0 2.9 9.9E-05 38.3 1.3 20 188-208 7-26 (173)
253 3khj_A Inosine-5-monophosphate 59.8 41 0.0014 35.8 10.4 88 8-98 136-236 (361)
254 3ceu_A Thiamine phosphate pyro 59.8 19 0.00064 35.0 7.2 72 19-97 90-171 (210)
255 1ko7_A HPR kinase/phosphatase; 59.5 9.8 0.00033 40.0 5.4 48 68-116 79-128 (314)
256 1thf_D HISF protein; thermophI 59.4 32 0.0011 33.8 9.0 79 26-109 152-241 (253)
257 3lab_A Putative KDPG (2-keto-3 59.1 17 0.00057 36.4 6.7 90 12-106 9-99 (217)
258 3uie_A Adenylyl-sulfate kinase 58.7 3.7 0.00013 39.1 1.9 25 184-209 24-48 (200)
259 2y88_A Phosphoribosyl isomeras 58.6 34 0.0012 33.3 9.0 78 26-108 150-241 (244)
260 3cf2_A TER ATPase, transitiona 57.8 4.9 0.00017 47.5 3.0 34 184-221 510-543 (806)
261 2jeo_A Uridine-cytidine kinase 57.1 3.5 0.00012 40.7 1.4 26 182-208 22-47 (245)
262 3ajx_A 3-hexulose-6-phosphate 56.6 11 0.00039 35.9 5.0 80 25-109 10-96 (207)
263 3kb2_A SPBC2 prophage-derived 55.8 3.8 0.00013 37.2 1.4 30 188-221 4-33 (173)
264 1sxj_E Activator 1 40 kDa subu 55.8 3.2 0.00011 42.7 0.9 45 160-207 12-57 (354)
265 3cmw_A Protein RECA, recombina 55.6 3.9 0.00013 52.1 1.8 55 184-244 1081-1135(1706)
266 1jcn_A Inosine monophosphate d 55.6 67 0.0023 35.4 11.7 85 7-97 285-386 (514)
267 3t61_A Gluconokinase; PSI-biol 55.1 3.9 0.00013 38.8 1.3 20 188-208 21-40 (202)
268 2px2_A Genome polyprotein [con 54.8 18 0.00063 37.2 6.3 63 39-116 138-202 (269)
269 1via_A Shikimate kinase; struc 54.1 4.1 0.00014 37.6 1.3 30 188-221 7-36 (175)
270 4fo4_A Inosine 5'-monophosphat 54.1 72 0.0025 34.0 11.2 87 9-98 140-240 (366)
271 3f4w_A Putative hexulose 6 pho 53.8 23 0.00077 33.9 6.6 83 25-110 10-97 (211)
272 1qv9_A F420-dependent methylen 53.7 19 0.00065 36.6 6.0 62 35-102 61-123 (283)
273 2w6r_A Imidazole glycerol phos 53.5 29 0.00098 34.5 7.5 70 25-99 30-104 (266)
274 1sxj_B Activator 1 37 kDa subu 53.5 2.7 9.1E-05 42.3 -0.1 33 188-221 45-79 (323)
275 1g41_A Heat shock protein HSLU 53.5 6.2 0.00021 43.5 2.8 32 186-221 51-82 (444)
276 2fli_A Ribulose-phosphate 3-ep 53.3 28 0.00095 33.4 7.2 80 14-97 106-197 (220)
277 3fro_A GLGA glycogen synthase; 52.9 98 0.0033 31.6 11.8 92 8-114 301-394 (439)
278 1zp6_A Hypothetical protein AT 52.6 5.7 0.0002 36.9 2.0 30 188-221 12-41 (191)
279 2p9j_A Hypothetical protein AQ 52.5 60 0.0021 28.9 9.0 56 40-99 8-82 (162)
280 1znw_A Guanylate kinase, GMP k 52.4 5.1 0.00018 38.4 1.7 27 181-208 16-42 (207)
281 3r2g_A Inosine 5'-monophosphat 52.4 32 0.0011 36.8 8.0 65 28-97 102-168 (361)
282 2v5j_A 2,4-dihydroxyhept-2-ENE 52.2 1.7E+02 0.006 29.9 13.4 82 25-110 47-131 (287)
283 3kta_A Chromosome segregation 52.2 4 0.00014 37.8 0.9 21 188-209 29-49 (182)
284 3tqf_A HPR(Ser) kinase; transf 51.7 5.3 0.00018 39.0 1.6 30 187-221 18-47 (181)
285 3iij_A Coilin-interacting nucl 51.0 5.8 0.0002 36.7 1.8 31 187-221 13-43 (180)
286 2iyv_A Shikimate kinase, SK; t 50.5 5.2 0.00018 37.1 1.4 30 188-221 5-34 (184)
287 1cke_A CK, MSSA, protein (cyti 50.4 5.1 0.00017 38.4 1.3 19 188-207 8-26 (227)
288 1knq_A Gluconate kinase; ALFA/ 50.3 5.2 0.00018 36.8 1.3 20 188-208 11-30 (175)
289 2vws_A YFAU, 2-keto-3-deoxy su 50.3 2E+02 0.0068 28.9 13.3 80 26-110 27-110 (267)
290 3vaa_A Shikimate kinase, SK; s 50.3 5.7 0.0002 37.7 1.7 31 187-221 27-57 (199)
291 2j41_A Guanylate kinase; GMP, 50.0 6.1 0.00021 37.1 1.8 22 187-209 8-29 (207)
292 1ly1_A Polynucleotide kinase; 49.6 5.4 0.00019 36.4 1.3 20 188-208 5-24 (181)
293 3te6_A Regulatory protein SIR3 49.6 3.6 0.00012 43.3 0.1 55 183-243 43-110 (318)
294 3fkq_A NTRC-like two-domain pr 49.1 1.2E+02 0.0043 31.6 12.0 89 6-113 35-126 (373)
295 2kjq_A DNAA-related protein; s 49.0 5 0.00017 37.0 1.0 35 186-221 37-71 (149)
296 1thf_D HISF protein; thermophI 48.7 86 0.003 30.6 10.1 68 25-97 30-102 (253)
297 1p0k_A Isopentenyl-diphosphate 48.4 2.2E+02 0.0075 29.5 13.7 69 25-98 190-280 (349)
298 3tr0_A Guanylate kinase, GMP k 48.4 5.3 0.00018 37.5 1.1 21 188-209 10-30 (205)
299 1z6g_A Guanylate kinase; struc 48.2 6.7 0.00023 38.2 1.8 34 173-207 11-44 (218)
300 3trf_A Shikimate kinase, SK; a 47.9 6 0.00021 36.6 1.4 30 188-221 8-37 (185)
301 1zuh_A Shikimate kinase; alpha 47.8 6.1 0.00021 36.1 1.4 31 187-221 9-39 (168)
302 1ypf_A GMP reductase; GUAC, pu 47.2 1.5E+02 0.005 30.9 12.1 84 8-97 139-238 (336)
303 1in4_A RUVB, holliday junction 47.1 7 0.00024 40.6 1.9 21 186-207 52-72 (334)
304 4avf_A Inosine-5'-monophosphat 47.1 52 0.0018 36.4 9.0 67 26-97 229-297 (490)
305 4fxs_A Inosine-5'-monophosphat 47.1 36 0.0012 37.7 7.7 65 28-97 233-299 (496)
306 1e6c_A Shikimate kinase; phosp 47.0 6.2 0.00021 35.9 1.3 29 188-220 5-33 (173)
307 1h5y_A HISF; histidine biosynt 46.9 54 0.0018 31.6 8.2 68 25-97 33-105 (253)
308 4a29_A Engineered retro-aldol 46.5 1.8E+02 0.0061 29.7 12.1 85 10-98 146-233 (258)
309 2c6q_A GMP reductase 2; TIM ba 46.1 1.5E+02 0.0051 31.3 12.0 89 9-100 152-255 (351)
310 3usb_A Inosine-5'-monophosphat 46.0 49 0.0017 36.8 8.6 67 26-97 256-324 (511)
311 2ze6_A Isopentenyl transferase 45.9 6.5 0.00022 39.3 1.3 30 188-221 4-33 (253)
312 1rd5_A Tryptophan synthase alp 45.8 76 0.0026 31.5 9.3 42 54-98 189-230 (262)
313 3ovp_A Ribulose-phosphate 3-ep 45.6 24 0.00082 35.1 5.5 83 25-112 17-108 (228)
314 3qz6_A HPCH/HPAI aldolase; str 45.3 1.2E+02 0.0041 30.6 10.7 83 26-111 25-109 (261)
315 3ovp_A Ribulose-phosphate 3-ep 45.2 60 0.002 32.2 8.3 95 14-114 109-218 (228)
316 4fo4_A Inosine 5'-monophosphat 45.1 41 0.0014 36.0 7.5 67 26-97 108-176 (366)
317 1jcn_A Inosine monophosphate d 44.9 62 0.0021 35.7 9.2 67 26-97 255-323 (514)
318 4ef8_A Dihydroorotate dehydrog 44.7 54 0.0018 34.9 8.3 60 55-116 265-331 (354)
319 2bdt_A BH3686; alpha-beta prot 44.6 6.7 0.00023 36.6 1.1 16 192-207 8-23 (189)
320 1kgd_A CASK, peripheral plasma 44.5 7.2 0.00025 36.5 1.3 21 188-209 8-28 (180)
321 3tj4_A Mandelate racemase; eno 44.5 1E+02 0.0034 32.6 10.4 78 26-108 209-288 (372)
322 2pez_A Bifunctional 3'-phospho 44.4 7.7 0.00026 35.9 1.5 33 188-221 8-40 (179)
323 2nv1_A Pyridoxal biosynthesis 44.4 31 0.0011 35.5 6.2 78 16-99 124-239 (305)
324 1k1e_A Deoxy-D-mannose-octulos 44.4 1.2E+02 0.004 27.9 9.8 61 40-104 7-86 (180)
325 1y63_A LMAJ004144AAA protein; 44.2 7.4 0.00025 36.5 1.4 21 188-209 13-33 (184)
326 4g68_A ABC transporter; transp 44.0 4.8 0.00016 43.1 0.0 11 633-643 81-91 (456)
327 1vc4_A Indole-3-glycerol phosp 43.5 54 0.0018 33.0 7.7 80 15-98 152-236 (254)
328 3tdn_A FLR symmetric alpha-bet 43.3 68 0.0023 31.5 8.4 67 26-97 36-107 (247)
329 1kht_A Adenylate kinase; phosp 43.2 7.8 0.00027 35.7 1.3 20 188-208 6-25 (192)
330 3c8u_A Fructokinase; YP_612366 43.1 7.7 0.00026 37.1 1.3 21 188-209 25-45 (208)
331 1g5t_A COB(I)alamin adenosyltr 43.1 39 0.0013 33.0 6.4 57 28-87 106-170 (196)
332 3ake_A Cytidylate kinase; CMP 42.9 7.9 0.00027 36.3 1.4 20 188-208 5-24 (208)
333 1jvn_A Glutamine, bifunctional 42.6 1.3E+02 0.0044 33.7 11.4 78 27-109 454-543 (555)
334 2pt5_A Shikimate kinase, SK; a 42.2 8.1 0.00028 35.1 1.3 20 188-208 3-22 (168)
335 3a00_A Guanylate kinase, GMP k 42.2 7.6 0.00026 36.5 1.1 18 192-209 7-24 (186)
336 3tau_A Guanylate kinase, GMP k 41.9 7.6 0.00026 37.3 1.1 21 188-209 11-31 (208)
337 3asz_A Uridine kinase; cytidin 41.9 7.1 0.00024 37.0 0.8 20 188-208 9-28 (211)
338 4had_A Probable oxidoreductase 41.7 1.2E+02 0.004 31.1 10.2 46 68-113 85-134 (350)
339 1wa3_A 2-keto-3-deoxy-6-phosph 41.7 1E+02 0.0035 29.1 9.1 90 12-107 6-98 (205)
340 1u0j_A DNA replication protein 41.6 8.3 0.00029 39.6 1.4 21 188-209 107-127 (267)
341 2qt1_A Nicotinamide riboside k 41.5 7.3 0.00025 37.0 0.8 21 188-209 24-44 (207)
342 2f9f_A First mannosyl transfer 41.5 2E+02 0.0068 25.9 12.1 79 23-115 84-162 (177)
343 2qor_A Guanylate kinase; phosp 41.1 10 0.00035 36.0 1.9 21 188-209 15-35 (204)
344 1m7g_A Adenylylsulfate kinase; 41.1 11 0.00038 36.0 2.1 38 183-221 23-61 (211)
345 2qmh_A HPR kinase/phosphorylas 41.0 11 0.00038 37.3 2.1 30 187-221 36-65 (205)
346 2if2_A Dephospho-COA kinase; a 40.9 7.5 0.00026 36.7 0.8 20 188-208 4-23 (204)
347 3usb_A Inosine-5'-monophosphat 40.7 2.1E+02 0.0073 31.6 12.7 88 8-98 287-388 (511)
348 2qjg_A Putative aldolase MJ040 40.7 1.4E+02 0.0049 29.5 10.4 79 28-114 169-258 (273)
349 1jjv_A Dephospho-COA kinase; P 40.6 9 0.00031 36.2 1.3 20 188-208 5-24 (206)
350 2vli_A Antibiotic resistance p 40.6 7.1 0.00024 35.9 0.6 27 188-218 8-34 (183)
351 1gox_A (S)-2-hydroxy-acid oxid 40.5 1.8E+02 0.0062 30.7 11.7 86 9-98 217-309 (370)
352 2rhm_A Putative kinase; P-loop 40.4 7.8 0.00027 35.9 0.8 30 188-221 8-37 (193)
353 4e22_A Cytidylate kinase; P-lo 40.3 9 0.00031 38.1 1.3 19 188-207 30-48 (252)
354 2yvu_A Probable adenylyl-sulfa 40.1 7.7 0.00026 36.1 0.8 33 188-221 16-48 (186)
355 1tev_A UMP-CMP kinase; ploop, 40.0 9.4 0.00032 35.2 1.3 20 188-208 6-25 (196)
356 1sxj_C Activator 1 40 kDa subu 40.0 9.1 0.00031 39.5 1.4 20 188-208 49-68 (340)
357 3fb4_A Adenylate kinase; psych 39.9 9.4 0.00032 36.3 1.4 19 188-207 3-21 (216)
358 1uf9_A TT1252 protein; P-loop, 39.8 8.8 0.0003 35.8 1.1 28 188-220 11-38 (203)
359 1gvn_B Zeta; postsegregational 39.8 9.5 0.00032 39.0 1.5 30 188-221 36-65 (287)
360 4gp7_A Metallophosphoesterase; 39.8 9.4 0.00032 35.5 1.3 18 188-206 12-29 (171)
361 3sz8_A 2-dehydro-3-deoxyphosph 39.6 50 0.0017 34.2 6.8 68 27-100 150-244 (285)
362 2gl5_A Putative dehydratase pr 39.6 1.1E+02 0.0037 32.5 9.8 78 26-108 230-309 (410)
363 3sr7_A Isopentenyl-diphosphate 39.5 1.5E+02 0.0051 31.6 10.8 86 8-98 197-307 (365)
364 4gj1_A 1-(5-phosphoribosyl)-5- 39.4 1.4E+02 0.0047 29.7 9.9 78 27-109 153-241 (243)
365 3dl0_A Adenylate kinase; phosp 39.2 9.8 0.00033 36.3 1.4 29 188-220 3-31 (216)
366 3ffs_A Inosine-5-monophosphate 39.1 60 0.002 35.2 7.7 64 28-97 146-211 (400)
367 1nks_A Adenylate kinase; therm 38.9 8.4 0.00029 35.4 0.8 33 188-221 4-36 (194)
368 2q5c_A NTRC family transcripti 38.8 1.5E+02 0.0051 28.4 9.8 59 7-65 18-91 (196)
369 2bfw_A GLGA glycogen synthase; 38.7 2.2E+02 0.0076 25.7 11.6 75 26-114 105-179 (200)
370 3cm0_A Adenylate kinase; ATP-b 38.7 10 0.00034 35.0 1.3 19 188-207 7-25 (186)
371 2gjl_A Hypothetical protein PA 38.6 1.1E+02 0.0038 31.4 9.5 62 25-98 83-145 (328)
372 1qop_A Tryptophan synthase alp 38.5 1.5E+02 0.0052 29.7 10.2 41 55-98 194-234 (268)
373 1rpx_A Protein (ribulose-phosp 38.5 27 0.00091 34.1 4.4 83 9-97 110-206 (230)
374 1r8j_A KAIA; circadian clock p 38.5 1.6E+02 0.0056 30.3 10.2 107 5-118 21-132 (289)
375 4h83_A Mandelate racemase/muco 38.3 42 0.0014 35.8 6.3 71 25-99 220-292 (388)
376 1ye8_A Protein THEP1, hypothet 38.1 10 0.00036 35.9 1.3 19 188-207 3-21 (178)
377 1req_B Methylmalonyl-COA mutas 38.1 46 0.0016 38.3 6.9 98 5-110 526-630 (637)
378 1pii_A N-(5'phosphoribosyl)ant 37.7 1.5E+02 0.0052 32.6 10.7 81 13-98 153-236 (452)
379 1ex7_A Guanylate kinase; subst 37.7 11 0.00038 36.3 1.5 21 186-207 2-22 (186)
380 2rdx_A Mandelate racemase/muco 37.0 53 0.0018 34.7 6.8 69 26-102 201-271 (379)
381 2ehv_A Hypothetical protein PH 37.0 11 0.00038 36.3 1.3 21 186-207 31-51 (251)
382 2r2a_A Uncharacterized protein 36.9 15 0.00052 35.6 2.3 18 188-206 8-25 (199)
383 3j16_B RLI1P; ribosome recycli 36.9 1.4E+02 0.0048 33.9 10.7 66 39-107 238-315 (608)
384 2f6u_A GGGPS, (S)-3-O-geranylg 36.8 76 0.0026 31.8 7.5 61 28-101 23-87 (234)
385 3vk5_A MOEO5; TIM barrel, tran 36.8 73 0.0025 33.1 7.5 57 40-99 199-257 (286)
386 3b0p_A TRNA-dihydrouridine syn 36.8 2.5E+02 0.0085 29.3 11.9 65 28-97 147-224 (350)
387 3a4m_A L-seryl-tRNA(SEC) kinas 36.8 11 0.00038 37.5 1.4 33 188-221 7-39 (260)
388 2agk_A 1-(5-phosphoribosyl)-5- 36.4 58 0.002 32.9 6.7 77 29-110 162-257 (260)
389 4a74_A DNA repair and recombin 36.2 9.9 0.00034 36.1 0.8 19 188-207 28-46 (231)
390 1vrd_A Inosine-5'-monophosphat 36.2 2E+02 0.0069 31.3 11.5 87 8-97 268-368 (494)
391 3r2g_A Inosine 5'-monophosphat 36.1 2.8E+02 0.0097 29.4 12.2 74 17-97 141-227 (361)
392 1dxe_A 2-dehydro-3-deoxy-galac 36.0 3.4E+02 0.011 27.0 13.2 82 26-110 28-111 (256)
393 3p3b_A Mandelate racemase/muco 36.0 59 0.002 34.6 7.0 74 25-102 212-289 (392)
394 2pbr_A DTMP kinase, thymidylat 35.9 12 0.00041 34.5 1.3 32 188-220 3-34 (195)
395 1uj2_A Uridine-cytidine kinase 35.8 12 0.0004 37.0 1.4 20 188-208 25-44 (252)
396 1qf9_A UMP/CMP kinase, protein 35.8 10 0.00035 34.8 0.8 20 188-208 9-28 (194)
397 3sgz_A Hydroxyacid oxidase 2; 35.5 1.9E+02 0.0065 30.7 10.7 86 9-98 209-301 (352)
398 1vht_A Dephospho-COA kinase; s 35.4 12 0.00041 35.7 1.3 20 188-208 7-26 (218)
399 2w0m_A SSO2452; RECA, SSPF, un 35.3 12 0.00042 35.3 1.4 34 187-221 25-58 (235)
400 1w5s_A Origin recognition comp 35.2 7.7 0.00026 40.4 -0.1 30 192-221 58-93 (412)
401 2gek_A Phosphatidylinositol ma 35.1 1.7E+02 0.0059 29.5 10.2 65 41-114 283-348 (406)
402 3n07_A 3-deoxy-D-manno-octulos 35.0 1.3E+02 0.0044 28.6 8.6 59 40-102 24-101 (195)
403 2p5t_B PEZT; postsegregational 34.5 10 0.00034 37.7 0.6 30 188-221 35-64 (253)
404 3r20_A Cytidylate kinase; stru 34.4 14 0.00047 37.1 1.6 20 187-207 11-30 (233)
405 2poz_A Putative dehydratase; o 34.4 68 0.0023 33.9 7.2 71 26-101 211-283 (392)
406 2plr_A DTMP kinase, probable t 34.4 13 0.00044 34.8 1.3 21 188-209 7-27 (213)
407 2cdn_A Adenylate kinase; phosp 34.3 13 0.00044 35.0 1.3 30 188-221 23-52 (201)
408 4avf_A Inosine-5'-monophosphat 34.3 3.6E+02 0.012 29.5 13.2 89 7-98 259-361 (490)
409 1i4n_A Indole-3-glycerol phosp 34.1 1.9E+02 0.0064 29.2 10.0 81 13-98 146-230 (251)
410 2bbw_A Adenylate kinase 4, AK4 33.9 13 0.00045 36.4 1.3 20 187-207 29-48 (246)
411 3khj_A Inosine-5-monophosphate 33.8 1.1E+02 0.0037 32.5 8.5 64 28-97 107-172 (361)
412 3tqv_A Nicotinate-nucleotide p 33.8 77 0.0026 32.9 7.1 53 56-112 187-239 (287)
413 2cvh_A DNA repair and recombin 33.8 13 0.00046 34.9 1.4 31 187-221 22-52 (220)
414 3iwp_A Copper homeostasis prot 33.6 2.8E+02 0.0097 28.6 11.3 86 22-112 44-151 (287)
415 3nwj_A ATSK2; P loop, shikimat 33.5 13 0.00044 37.5 1.2 23 185-208 48-70 (250)
416 1viz_A PCRB protein homolog; s 33.5 76 0.0026 31.9 6.9 64 28-103 23-89 (240)
417 3c48_A Predicted glycosyltrans 33.5 1.5E+02 0.0052 30.5 9.6 74 28-114 317-390 (438)
418 2pk2_A Cyclin-T1, protein TAT; 33.4 8.9 0.0003 40.9 0.0 14 644-657 320-335 (358)
419 2v9p_A Replication protein E1; 33.4 16 0.00056 38.0 2.0 29 179-208 120-148 (305)
420 2bwj_A Adenylate kinase 5; pho 33.4 12 0.0004 34.8 0.8 20 188-208 15-34 (199)
421 2jaq_A Deoxyguanosine kinase; 33.4 14 0.00047 34.4 1.3 20 188-208 3-22 (205)
422 3a8t_A Adenylate isopentenyltr 33.2 16 0.00056 38.7 2.0 30 188-221 43-72 (339)
423 3gr7_A NADPH dehydrogenase; fl 33.1 3.5E+02 0.012 28.2 12.3 67 26-97 230-305 (340)
424 1rz3_A Hypothetical protein rb 33.0 12 0.00041 35.6 0.8 21 188-209 25-45 (201)
425 1knx_A Probable HPR(Ser) kinas 33.0 13 0.00045 39.0 1.2 30 187-221 149-178 (312)
426 2z0h_A DTMP kinase, thymidylat 32.8 14 0.00049 34.1 1.4 29 192-220 6-34 (197)
427 1vhc_A Putative KHG/KDPG aldol 32.6 1.1E+02 0.0037 30.3 7.8 98 9-111 10-108 (224)
428 2nli_A Lactate oxidase; flavoe 32.3 2.1E+02 0.0073 30.2 10.6 86 9-98 221-313 (368)
429 2c95_A Adenylate kinase 1; tra 32.3 12 0.00043 34.5 0.8 30 188-221 12-41 (196)
430 3lnc_A Guanylate kinase, GMP k 32.2 11 0.00039 36.4 0.5 19 188-207 30-48 (231)
431 2es4_D Lipase chaperone; prote 32.2 9.6 0.00033 40.4 0.0 40 624-665 96-144 (332)
432 3jva_A Dipeptide epimerase; en 32.1 1.1E+02 0.0036 32.1 8.1 72 25-101 194-267 (354)
433 3tif_A Uncharacterized ABC tra 31.9 15 0.00053 36.3 1.5 27 182-209 28-54 (235)
434 2b7n_A Probable nicotinate-nuc 31.8 1.7E+02 0.0059 29.7 9.4 79 8-96 171-255 (273)
435 3kru_A NADH:flavin oxidoreduct 31.8 1.5E+02 0.0053 31.1 9.3 68 27-97 229-305 (343)
436 3paj_A Nicotinate-nucleotide p 31.8 4.5E+02 0.015 27.6 12.6 67 20-95 234-300 (320)
437 1ukz_A Uridylate kinase; trans 31.8 15 0.00052 34.4 1.4 19 188-207 18-36 (203)
438 2wwf_A Thymidilate kinase, put 31.7 13 0.00044 35.0 0.8 20 188-208 13-32 (212)
439 1a5t_A Delta prime, HOLB; zinc 31.7 20 0.00069 37.0 2.4 19 188-207 27-45 (334)
440 3jr2_A Hexulose-6-phosphate sy 31.7 62 0.0021 31.4 5.8 83 24-110 15-103 (218)
441 4g92_A HAPB protein; transcrip 31.5 52 0.0018 26.8 4.1 27 649-675 36-63 (64)
442 1ltq_A Polynucleotide kinase; 31.5 15 0.00051 36.9 1.3 20 188-208 5-24 (301)
443 1lvg_A Guanylate kinase, GMP k 31.5 16 0.00056 34.7 1.5 19 188-207 7-25 (198)
444 1n0w_A DNA repair protein RAD5 31.4 15 0.00053 35.1 1.3 22 186-208 25-46 (243)
445 1zh8_A Oxidoreductase; TM0312, 31.3 1.9E+02 0.0066 29.6 9.9 45 68-112 81-129 (340)
446 1jr3_D DNA polymerase III, del 31.3 1.6E+02 0.0056 29.9 9.3 89 26-115 60-157 (343)
447 1vrd_A Inosine-5'-monophosphat 31.3 1.4E+02 0.0047 32.6 9.1 68 25-97 236-305 (494)
448 2cbz_A Multidrug resistance-as 31.1 16 0.00055 36.2 1.5 26 181-207 27-52 (237)
449 2grj_A Dephospho-COA kinase; T 31.0 16 0.00054 35.2 1.4 20 188-208 15-34 (192)
450 3zvl_A Bifunctional polynucleo 31.0 16 0.00056 39.3 1.6 21 188-208 260-280 (416)
451 3evf_A RNA-directed RNA polyme 30.9 67 0.0023 33.2 6.1 59 39-112 139-199 (277)
452 1qo2_A Molecule: N-((5-phospho 30.8 1.2E+02 0.004 29.6 7.7 68 24-97 29-101 (241)
453 2gdq_A YITF; mandelate racemas 30.8 85 0.0029 33.2 7.1 76 26-106 196-274 (382)
454 3md9_A Hemin-binding periplasm 30.7 1.1E+02 0.0036 29.8 7.4 49 31-88 52-101 (255)
455 3rcy_A Mandelate racemase/muco 30.6 70 0.0024 34.7 6.6 67 26-97 215-282 (433)
456 1g8f_A Sulfate adenylyltransfe 30.4 17 0.00057 40.7 1.6 24 188-211 397-420 (511)
457 2nzl_A Hydroxyacid oxidase 1; 30.3 2.1E+02 0.0073 30.5 10.2 76 21-100 257-339 (392)
458 2qgy_A Enolase from the enviro 30.3 65 0.0022 34.2 6.1 71 26-101 206-278 (391)
459 1nn5_A Similar to deoxythymidy 30.3 14 0.00048 34.7 0.8 20 188-208 12-31 (215)
460 1ak2_A Adenylate kinase isoenz 30.3 19 0.00065 34.9 1.8 29 188-220 19-47 (233)
461 1vli_A Spore coat polysacchari 30.2 3.1E+02 0.01 29.6 11.3 122 28-154 174-334 (385)
462 3stp_A Galactonate dehydratase 30.2 75 0.0026 34.3 6.7 67 26-97 242-309 (412)
463 1htw_A HI0065; nucleotide-bind 30.2 18 0.00062 33.7 1.5 24 183-207 31-54 (158)
464 2i1o_A Nicotinate phosphoribos 30.1 2.5E+02 0.0086 30.2 10.7 88 7-97 198-296 (398)
465 2ox4_A Putative mandelate race 30.1 72 0.0025 33.9 6.5 70 26-100 221-292 (403)
466 2qzs_A Glycogen synthase; glyc 30.1 3.4E+02 0.012 28.4 11.8 76 26-114 356-440 (485)
467 3jy6_A Transcriptional regulat 30.1 1.9E+02 0.0064 27.9 9.1 61 8-78 28-94 (276)
468 1izc_A Macrophomate synthase i 30.0 3.2E+02 0.011 28.6 11.4 81 27-111 52-138 (339)
469 2eyu_A Twitching motility prot 29.4 18 0.0006 36.6 1.4 24 183-207 23-46 (261)
470 2og9_A Mandelate racemase/muco 29.3 67 0.0023 34.1 6.0 69 26-99 219-289 (393)
471 4fb5_A Probable oxidoreductase 29.3 1.1E+02 0.0037 31.4 7.6 45 68-112 93-141 (393)
472 3l0g_A Nicotinate-nucleotide p 29.3 1.2E+02 0.0042 31.6 7.8 53 56-112 196-248 (300)
473 3l8h_A Putative haloacid dehal 29.3 2.4E+02 0.0083 25.1 9.2 23 54-80 32-54 (179)
474 1qpo_A Quinolinate acid phosph 29.2 2.3E+02 0.0079 29.1 9.9 71 20-96 197-267 (284)
475 1x6v_B Bifunctional 3'-phospho 29.1 20 0.00068 41.2 1.9 33 188-221 55-87 (630)
476 1s96_A Guanylate kinase, GMP k 29.0 16 0.00056 35.8 1.1 20 188-208 19-38 (219)
477 2ps2_A Putative mandelate race 29.0 80 0.0027 33.1 6.5 69 26-101 202-272 (371)
478 2pgw_A Muconate cycloisomerase 28.9 80 0.0028 33.3 6.6 70 26-100 202-273 (384)
479 3tha_A Tryptophan synthase alp 28.9 1E+02 0.0035 31.2 7.0 89 25-116 25-140 (252)
480 3tlx_A Adenylate kinase 2; str 28.9 18 0.00061 35.7 1.3 19 188-207 32-50 (243)
481 2h6r_A Triosephosphate isomera 28.5 3E+02 0.01 26.7 10.2 88 14-106 108-212 (219)
482 2qdd_A Mandelate racemase/muco 28.5 71 0.0024 33.6 6.0 66 26-100 202-269 (378)
483 3gcz_A Polyprotein; flavivirus 28.5 54 0.0019 34.0 4.9 59 39-112 155-216 (282)
484 3mkc_A Racemase; metabolic pro 28.5 62 0.0021 34.5 5.6 77 26-107 218-296 (394)
485 2uva_G Fatty acid synthase bet 28.4 86 0.0029 40.9 7.7 84 9-97 684-794 (2060)
486 3ugv_A Enolase; enzyme functio 28.3 1E+02 0.0035 32.9 7.2 68 25-97 230-298 (390)
487 1eep_A Inosine 5'-monophosphat 28.2 1.7E+02 0.0059 31.0 9.1 66 27-97 154-221 (404)
488 2ff7_A Alpha-hemolysin translo 28.2 18 0.00061 36.2 1.2 29 180-209 30-58 (247)
489 3aez_A Pantothenate kinase; tr 28.1 18 0.00063 37.5 1.3 21 188-209 93-113 (312)
490 1a7j_A Phosphoribulokinase; tr 28.1 13 0.00046 38.0 0.2 21 188-208 7-27 (290)
491 1f2t_A RAD50 ABC-ATPase; DNA d 28.0 20 0.00068 32.8 1.4 20 188-208 26-45 (149)
492 2gza_A Type IV secretion syste 27.9 16 0.00056 38.5 0.9 28 182-210 172-199 (361)
493 3ddm_A Putative mandelate race 27.7 71 0.0024 34.1 5.9 78 25-106 210-289 (392)
494 1sgw_A Putative ABC transporte 27.6 19 0.00065 35.3 1.2 28 181-209 31-58 (214)
495 4h1z_A Enolase Q92ZS5; dehydra 27.6 1.3E+02 0.0046 32.1 8.1 71 24-99 242-313 (412)
496 2qq6_A Mandelate racemase/muco 27.6 77 0.0026 33.8 6.2 66 26-96 222-288 (410)
497 1rzu_A Glycogen synthase 1; gl 27.5 4.2E+02 0.014 27.7 11.9 95 5-113 333-438 (485)
498 3iwp_A Copper homeostasis prot 27.5 98 0.0033 32.1 6.6 68 24-95 165-235 (287)
499 1zak_A Adenylate kinase; ATP:A 27.4 18 0.00063 34.6 1.1 25 182-206 1-25 (222)
500 2zbt_A Pyridoxal biosynthesis 27.3 1.6E+02 0.0055 29.7 8.3 94 17-116 125-261 (297)
No 1
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.97 E-value=2.1e-30 Score=279.70 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+|+|++++++|++. .+.+||||||++.+.+
T Consensus 11 ~~~~~l~~~L~~~g~~-v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~ell~~lr~~--~~~~pvI~lT~~~~~~ 85 (368)
T 3dzd_A 11 SITSSLSAILEEEGYH-PDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVNFIDFIKEN--SPDSVVIVITGHGSVD 85 (368)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTTHHHHHHHH--CTTCEEEEEECSSCCH
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeEEEEeCCCCHH
Confidence 4577888899999998 7899999999999998 8899999999 9999999999999987 4899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGG 162 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~ 162 (687)
.+.+|++.||+|||.||++.++|...|+++++......... . ..
T Consensus 86 ~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~~~~---------------------------~---------~~ 129 (368)
T 3dzd_A 86 TAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPQ---------------------------E---------EI 129 (368)
T ss_dssp HHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSCCCCCC---------------------------C---------CC
T ss_pred HHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhhhhccc---------------------------c---------cc
Confidence 99999999999999999999999999999988764322100 0 01
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+++|.+..++.........+.++.+|+| +||+|||||++||+||..|.|... ||+|| |+++|++++|++||||.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli-~GesGtGKe~lAr~ih~~s~r~~~-fv~vn----c~~~~~~~~~~~lfg~~ 203 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLI-TGESGTGKEIVARLIHRYSGRKGA-FVDLN----CASIPQELAESELFGHE 203 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEE-ECCTTSSHHHHHHHHHHHHCCCSC-EEEEE----SSSSCTTTHHHHHHEEC
T ss_pred cccccchHHHHHHhhhhhhhccchhheE-EeCCCchHHHHHHHHHHhccccCC-cEEEE----cccCChHHHHHHhcCcc
Confidence 3455555555555445555689999999 799999999999999999999876 99999 99999999999999996
Q ss_pred c
Q 005631 243 L 243 (687)
Q Consensus 243 l 243 (687)
-
T Consensus 204 ~ 204 (368)
T 3dzd_A 204 K 204 (368)
T ss_dssp S
T ss_pred c
Confidence 4
No 2
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.96 E-value=4.9e-30 Score=278.35 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||+||++.+.+
T Consensus 11 ~~~~~l~~~L~~~g~~-v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~ell~~lr~~--~~~~pvIvlT~~~~~~ 85 (387)
T 1ny5_A 11 VFRGLLEEYLSMKGIK-VESAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKER--SPETEVIVITGHGTIK 85 (387)
T ss_dssp HHHHHHHHHHHHHTCE-EEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHH--CTTSEEEEEEETTCHH
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEeCCCCHH
Confidence 3566778888888998 7799999999999998 8899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGG 162 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~ 162 (687)
.++++++.||+|||.||++.++|..+|.++++....... ....+.. ... . ..
T Consensus 86 ~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l~~~-----~~~l~~~-----~~~-~-----------------~~ 137 (387)
T 1ny5_A 86 TAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKE-----NELLRRE-----KDL-K-----------------EE 137 (387)
T ss_dssp HHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-----HHT-T-----------------CC
T ss_pred HHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHHHHH-----HHHhhhh-----hhh-c-----------------ch
Confidence 999999999999999999999999999999876533210 0000000 000 0 01
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
.++|.+..++.........+.++.+|+| +||+||||+++||+||..|.|..+|||+|| |+++|++++|++||||.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli-~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~----~~~~~~~~~~~elfg~~ 212 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLI-TGESGVGKEVVARLIHKLSDRSKEPFVALN----VASIPRDIFEAELFGYE 212 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEE-ECSTTSSHHHHHHHHHHHSTTTTSCEEEEE----TTTSCHHHHHHHHHCBC
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEE-ecCCCcCHHHHHHHHHHhcCCCCCCeEEEe----cCCCCHHHHHHHhcCCC
Confidence 2455555666655555556789999999 899999999999999999999999999999 99999999999999996
Q ss_pred c
Q 005631 243 L 243 (687)
Q Consensus 243 l 243 (687)
-
T Consensus 213 ~ 213 (387)
T 1ny5_A 213 K 213 (387)
T ss_dssp T
T ss_pred C
Confidence 3
No 3
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.87 E-value=7.6e-22 Score=184.72 Aligned_cols=110 Identities=25% Similarity=0.436 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+.++..+|+..||.+|..|.+|.+|+++++. ..|||||+|+ ||+|||++++++||+.+..+.+|||++|++.+.+
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~ 100 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKRE 100 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHH
T ss_pred HHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHH
Confidence 467889999999999867889999999999998 8999999999 9999999999999987767899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.+|+++||+|||+|||++++|..+|++++++
T Consensus 101 ~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 101 QIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988764
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.77 E-value=5.2e-18 Score=151.63 Aligned_cols=108 Identities=23% Similarity=0.359 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++...++.+|||++|++.+.+
T Consensus 13 ~~~~~l~~~l~~~g~~-v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~ 89 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYE-VIEAENGQIALEKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEE 89 (122)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHTT--BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHH
T ss_pred HHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchH
Confidence 3566778888899998 6799999999999987 8899999999 9999999999999987556889999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.+.++++.||++||.||++.++|...|+++++
T Consensus 90 ~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 90 DESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred HHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998764
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.75 E-value=1.3e-17 Score=151.75 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.+..+.+|||++|++.+..
T Consensus 15 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~ 91 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYE-VRRAASGEEALQQIYK--NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDIS 91 (136)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHH
T ss_pred HHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHH
Confidence 3566778888889998 7799999999999998 8999999999 9999999999999986545789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|++++++.
T Consensus 92 ~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 92 AKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp HHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988754
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.73 E-value=4.2e-17 Score=145.04 Aligned_cols=105 Identities=25% Similarity=0.351 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. ..+|||++|+..+..
T Consensus 13 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 13 PIADILEFNLRKEGYE-VHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKDGVEVCREVRKK---YDMPIIMLTAKDSEI 86 (120)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHT--TCCSEEEEETTSTTTHHHHHHHHHHTT---CCSCEEEEEESSCHH
T ss_pred HHHHHHHHHHHhCCEE-EEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEEEEECCCChH
Confidence 3466777888889998 6789999999999988 8999999999 9999999999999975 479999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.+.++++.||++||.||++.++|..+|+++++
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 87 DKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp HHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999988765
No 7
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.72 E-value=6.9e-17 Score=145.16 Aligned_cols=110 Identities=24% Similarity=0.431 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||..|..+.++.+|++.+.. ...|||||+|+ ||+++|++++++|++....+.+|||++|++.+..
T Consensus 16 ~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~ 94 (129)
T 3h1g_A 16 TMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA-NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKA 94 (129)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChH
Confidence 456777888888999657899999999999876 13799999999 9999999999999986546789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.+.++++.||++||.||++.++|..+|+.++.
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 95 EVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998764
No 8
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.71 E-value=5.1e-19 Score=163.46 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
++.++..+|+..||+++.+|.++++|+++++. ..|||||+|+ ||+|+|++++++|++. ++||||+|++++...
T Consensus 20 ~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~~----~ipvI~lTa~~~~~~ 93 (123)
T 2lpm_A 20 IAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSYPVADILAER----NVPFIFATGYGSKGL 93 (123)
T ss_dssp TSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHHT----CCSSCCBCTTCTTSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcC----CCCEEEEecCccHHH
Confidence 45678889999999955689999999999998 8999999999 9999999999999964 689999999987654
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
+.++|+.+||.|||++++|..+|.+++
T Consensus 94 ---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 94 ---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp ---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred ---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 346799999999999999999887654
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.71 E-value=1.1e-16 Score=145.21 Aligned_cols=111 Identities=19% Similarity=0.379 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhh---CCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~---~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
..+..+..+|+..||..|..+.++.+|++.+... ...|||||+|+ ||+++|++++++|++.. .+.+|||++|++.
T Consensus 13 ~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~-~~~~~ii~lt~~~ 91 (133)
T 2r25_B 13 VNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL-GYTSPIVALTAFA 91 (133)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS-CCCSCEEEEESCC
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc-CCCCCEEEEECCC
Confidence 4566778888888986578999999999988641 14699999999 99999999999999742 3578999999999
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+...+.++++.||++||.||++.++|..+|++++..
T Consensus 92 ~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 92 DDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887643
No 10
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.71 E-value=3.5e-16 Score=137.59 Aligned_cols=107 Identities=23% Similarity=0.351 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|+.. .+.+|||++|+..+...
T Consensus 12 ~~~~l~~~l~~~g~~-v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~ 86 (121)
T 2pl1_A 12 LRHHLKVQIQDAGHQ-VDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPILVLTARESWQD 86 (121)
T ss_dssp HHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHT--TCCSCEEEEESCCCHHH
T ss_pred HHHHHHHHHhhcCCE-EEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhc--CCCCCEEEEecCCCHHH
Confidence 456677788889998 7899999999999998 8899999999 9999999999999976 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||++||.||++.++|...|++++++.
T Consensus 87 ~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 87 KVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp HHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988764
No 11
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.70 E-value=3.4e-16 Score=141.18 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+..
T Consensus 14 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 88 (132)
T 3crn_A 14 AILDSTKQILEFEGYE-VEIAATAGEGLAKIEN--EFFNLALFXIKLPDMEGTELLEKAHKL--RPGMKKIMVTGYASLE 88 (132)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEECSBCSSSBHHHHHHHHHHH--CTTSEEEEEESCCCHH
T ss_pred HHHHHHHHHHHHCCce-EEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhh--CCCCcEEEEeccccHH
Confidence 3466777888888998 6799999999999998 8899999999 9999999999999987 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|++++++.
T Consensus 89 ~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 89 NSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988664
No 12
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.70 E-value=6.4e-17 Score=155.36 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+.+
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~--~~~~~ii~lt~~~~~~ 92 (184)
T 3rqi_A 18 VFAGTLARGLERRGYA-VRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSGLSLIAPLCDL--QPDARILVLTGYASIA 92 (184)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECSHHHHHHHHTT--SCCSEEEECSEETTEESHHHHHHHHHH--CTTCEEEEEESSCCHH
T ss_pred HHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccHHHHHHHHHhc--CCCCCEEEEeCCCCHH
Confidence 4567788888889998 7899999999999988 8899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.+|++.||++||.||++.++|...|+.+++...
T Consensus 93 ~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 93 TAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred HHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999988876543
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.70 E-value=2.7e-16 Score=146.05 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+|||++|+..+.+
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~ 94 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQ-TEHVRNGREAVRFLSL--TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPR 94 (154)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESSHHHHHHHHTT--CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHH
T ss_pred HHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChH
Confidence 4567788889999998 7899999999999988 8899999999 9999999999999987555899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.||++||.||++.++|...|+++++....
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 95 DVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp HHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887644
No 14
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.70 E-value=3.6e-16 Score=139.12 Aligned_cols=111 Identities=20% Similarity=0.366 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||..|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++....+.+|||++|+..+..
T Consensus 15 ~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~ 92 (128)
T 1jbe_A 15 TMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKE 92 (128)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHH
T ss_pred HHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHH
Confidence 345677778888899448899999999999987 7899999999 9999999999999985445789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|++++++.
T Consensus 93 ~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 93 NIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988754
No 15
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.69 E-value=2.2e-17 Score=177.48 Aligned_cols=163 Identities=23% Similarity=0.322 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+||||+|++.+.+
T Consensus 16 ~~~~~l~~~L~~~g~~-v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~--~~~~pii~lt~~~~~~ 90 (394)
T 3eq2_A 16 VVRESLAAYLEDSNFK-VLQALNGLQGLQIFES--EQPDLVICDLRMPQIDGLELIRRIRQT--ASETPIIVLSGAGVMS 90 (394)
T ss_dssp HHHHHHHHHHHHTTEE-EEECSSHHHHHHHHHH--SCCSEEEECCCSSSSCTHHHHHHHHHT--TCCCCEEEC---CHHH
T ss_pred HHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHHhh--CCCCcEEEEEcCCCHH
Confidence 4567788889999998 6799999999999998 8899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCC-CHHHHHHHHHHHHHHHhcCCC-----------------------CCCCcchhhhhhhcccc
Q 005631 83 LVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCHSSSG-----------------------SGSESCTQTQKSIKSKN 138 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~-~~eeL~~~L~~alr~~~~~s~-----------------------s~~~~~~~~q~~l~~k~ 138 (687)
.+.+|++.||+|||.||+ ..++|...|++++++...... .........|..++|..
T Consensus 91 ~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~l~~e~~~~~~~L~~~~~~L~~~~~~l~~~~~~a~~iQ~~lLp~~ 170 (394)
T 3eq2_A 91 DAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAYLRVENQRYRDKLEAANRELQASLNLLQEDQNAGRQVQMNMLPVT 170 (394)
T ss_dssp HHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence 999999999999999999 688898888877654321100 00001123344444432
Q ss_pred ccc------------cCCCCCCCC---CCCCCccccccCCCCCCCccc
Q 005631 139 VEN------------SGNNTGSND---EDNNGSIGVNGGDGSDDGSGT 171 (687)
Q Consensus 139 i~~------------se~~s~s~~---~~d~~~~g~~~~D~sG~G~~a 171 (687)
... ....+|+.+ ..+++.+.+.+.|++|||..+
T Consensus 171 ~~~~~~~~~~~~~~p~~~vgGD~yd~~~~~~~~~~~~i~Dv~GhGv~a 218 (394)
T 3eq2_A 171 PWSIEGLEFSHRIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASS 218 (394)
T ss_dssp TEEETTEEEEEEEC-----CCCEEECCEETTTEEEEEEEEESSCSTTT
T ss_pred CCCCCCeEEEEEeccchhcCccEEeEEEeCCCcEEEEEEECCCCChHH
Confidence 111 233445532 345677888999999999886
No 16
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.69 E-value=2.6e-16 Score=138.53 Aligned_cols=106 Identities=27% Similarity=0.430 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||.++..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. .+.+|||++|+..+..
T Consensus 13 ~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 88 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKI--DPNAKIIVCSAMGQQA 88 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHH--CTTCCEEEEECTTCHH
T ss_pred HHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhh--CCCCeEEEEeCCCCHH
Confidence 356677888888999877789999999999988 7899999999 9999999999999987 4789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
.+.++++.||++||.||++.++|...|++++
T Consensus 89 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 89 MVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.69 E-value=3.2e-16 Score=139.65 Aligned_cols=106 Identities=19% Similarity=0.335 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.++++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+...
T Consensus 15 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~ 89 (126)
T 1dbw_A 15 VRKSLAFMLTMNGFA-VKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDL--KINIPSIVITGHGDVPM 89 (126)
T ss_dssp HHHHHHHHHHHTTCE-EEEESCHHHHHHHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHT--TCCCCEEEEECTTCHHH
T ss_pred HHHHHHHHHHhCCcE-EEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEEEEECCCCHHH
Confidence 456677788888998 6789999999999987 7899999999 9999999999999986 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+.++++.||++||.||++.++|..+|++++++
T Consensus 90 ~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 90 AVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp HHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988753
No 18
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.68 E-value=7.4e-16 Score=140.41 Aligned_cols=115 Identities=13% Similarity=0.237 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMK-VITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~-~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..|+. .|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+.
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSD 93 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCH
T ss_pred HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCH
Confidence 3566788888888886 46789999999999988 8899999999 999999999999998544689999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCC-CHHHHHHHHHHHHHHHhcCC
Q 005631 82 GLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCHSSS 120 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~-~~eeL~~~L~~alr~~~~~s 120 (687)
+.+.++++.||++||.||+ +.++|..+|+++++++....
T Consensus 94 ~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~ 133 (144)
T 3kht_A 94 DRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVN 133 (144)
T ss_dssp HHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999 99999999999999876654
No 19
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.68 E-value=8.9e-16 Score=135.45 Aligned_cols=107 Identities=19% Similarity=0.293 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. +.+|||++|+..+..
T Consensus 13 ~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~ 86 (122)
T 1zgz_A 13 VTQARLQSYFTQEGYT-VSVTASGAGLREIMQN--QSVDLILLDINLPDENGLMLTRALRER---STVGIILVTGRSDRI 86 (122)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHTT---CCCEEEEEESSCCHH
T ss_pred HHHHHHHHHHHHCCCe-EEEecCHHHHHHHHhc--CCCCEEEEeCCCCCCChHHHHHHHHhc---CCCCEEEEECCCChh
Confidence 3456677788888998 6799999999999988 7899999999 9999999999999973 689999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|++++++.
T Consensus 87 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 87 DRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988764
No 20
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.68 E-value=5.4e-16 Score=143.29 Aligned_cols=111 Identities=22% Similarity=0.344 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+
T Consensus 25 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 99 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYT-LHFARDATQALQLLAS--REVDLVISAAHLPQMDGPTLLARIHQQ--YPSTTRILLTGDPDLK 99 (153)
T ss_dssp HHHHHHHHHHTTSSCE-EEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEEECCCCCHH
T ss_pred HHHHHHHHHhcccCcE-EEEECCHHHHHHHHHc--CCCCEEEEeCCCCcCcHHHHHHHHHhH--CCCCeEEEEECCCCHH
Confidence 3567788888999998 7799999999999998 8999999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCC-CCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 83 LVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 83 ~av~Am~aG-A~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
.+.++++.| |++||.||++.++|..+|++++++....
T Consensus 100 ~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 100 LIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137 (153)
T ss_dssp HHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999 9999999999999999999998876543
No 21
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.68 E-value=2.1e-16 Score=140.78 Aligned_cols=110 Identities=27% Similarity=0.387 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||..|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++.+..+.+|||++|+..+..
T Consensus 17 ~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 94 (129)
T 1p6q_A 17 TSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRA 94 (129)
T ss_dssp HHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHH
T ss_pred HHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHH
Confidence 346677788888899447889999999999988 7899999999 9999999999999986545789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|..+|++++++
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 95 LVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp HHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988753
No 22
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.68 E-value=6e-16 Score=142.18 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhh--cCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH--KTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~--~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+..||. |..+.++++|++.+.. ..|||||+|+ ||+++|++++++|+.. ...+.+|||++|+..+
T Consensus 25 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~ 101 (143)
T 3m6m_D 25 ANRMVLQRLLEKAGHK-VLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVT 101 (143)
T ss_dssp HHHHHHHHHHHC--CE-EEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCC
Confidence 3567788888889998 6789999999999988 8999999999 9999999999999853 2246799999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.+.++++.||++||.||++.++|...|.++...
T Consensus 102 ~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 102 PEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887543
No 23
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.67 E-value=1.3e-15 Score=140.38 Aligned_cols=114 Identities=20% Similarity=0.315 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHH---------hhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCce
Q 005631 4 LLAMLLLLCFEIAVM--KVITEATNGLQAWKILE---------DLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 71 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~--~~V~~A~sg~eALe~L~---------~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iP 71 (687)
..+..+..+|+..|+ . |..+.++.+|++.+. . ..|||||+|+ ||+++|++++++|++.+..+.+|
T Consensus 15 ~~~~~l~~~L~~~g~~~~-v~~~~~~~~al~~l~~~~~~~~~~~--~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~p 91 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNE-IIAFTDGTSALNYLFGDDKSGRVSA--GRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSP 91 (152)
T ss_dssp HHHHHHHHHHHHTTCCCC-EEEESSHHHHHHHHHCTTSSSGGGT--TCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSC
T ss_pred HHHHHHHHHHHhCCCcce-EEEeCCHHHHHHHHhcccccccccc--CCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCC
Confidence 356778888888998 6 789999999999996 4 6899999999 99999999999999854468999
Q ss_pred EEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCC
Q 005631 72 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 120 (687)
Q Consensus 72 VIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s 120 (687)
||++|+..+.+.+.++++.||++||.||++.++|..+|+++.+.+....
T Consensus 92 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 140 (152)
T 3heb_A 92 VVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSVMQ 140 (152)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999987775543
No 24
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=6.9e-16 Score=140.54 Aligned_cols=109 Identities=27% Similarity=0.367 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+.
T Consensus 16 ~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~g~~l~~~l~~~--~~~~~ii~ls~~~~~~~ 90 (137)
T 3cfy_A 16 LAILYKQYVKDEPYD-IFHVETGRDAIQFIER--SKPQLIILDLKLPDMSGEDVLDWINQN--DIPTSVIIATAHGSVDL 90 (137)
T ss_dssp HHHHHHHHTTTSSSE-EEEESSHHHHHHHHHH--HCCSEEEECSBCSSSBHHHHHHHHHHT--TCCCEEEEEESSCCHHH
T ss_pred HHHHHHHHHHhcCce-EEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhc--CCCCCEEEEEecCcHHH
Confidence 456677788888998 6799999999999988 7899999999 9999999999999986 47899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
+.++++.||++||.||++.++|..+|++++++...
T Consensus 91 ~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 91 AVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp HHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876543
No 25
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.67 E-value=5.4e-16 Score=158.41 Aligned_cols=112 Identities=26% Similarity=0.387 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCC-ccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~-pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+...|+..||. |..+.++.+|++.+.. .. |||||+|+ ||+++|++++++||+......+|||++|++.+..
T Consensus 136 ~~~~l~~~L~~~~~~-v~~a~~~~eal~~l~~--~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~ 212 (259)
T 3luf_A 136 SRHRTMAQLRKQLLQ-VHEASHAREALATLEQ--HPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRG 212 (259)
T ss_dssp HHHHHHHHHHTTTCE-EEEESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSS
T ss_pred HHHHHHHHHHHcCcE-EEEeCCHHHHHHHHhc--CCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHH
Confidence 456677788888998 7899999999999987 54 89999999 9999999999999987544679999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
.+.+|++.||+|||.||++.++|..+|++++++....
T Consensus 213 ~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~ 249 (259)
T 3luf_A 213 LSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQF 249 (259)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhhh
Confidence 9999999999999999999999999999999877553
No 26
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.67 E-value=1.1e-15 Score=135.04 Aligned_cols=107 Identities=24% Similarity=0.368 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. +.+|||++|+..+..
T Consensus 14 ~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~ 87 (123)
T 1xhf_A 14 VTRNTLKSIFEAEGYD-VFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELREQ---ANVALMFLTGRDNEV 87 (123)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEEEEEESCCSHH
T ss_pred HHHHHHHHHHhhCCcE-EEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhC---CCCcEEEEECCCChH
Confidence 3456777888888998 7899999999999998 8899999999 9999999999999986 589999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|++++++.
T Consensus 88 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 88 DKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888653
No 27
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.67 E-value=2.9e-16 Score=142.19 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+..
T Consensus 17 ~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 93 (140)
T 3grc_A 17 DIARLLNLMLEKGGFD-SDMVHSAAQALEQVAR--RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREG 93 (140)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHH
T ss_pred HHHHHHHHHHHHCCCe-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChH
Confidence 3566778888889998 7899999999999998 8899999999 9999999999999984346899999999998887
Q ss_pred HHH-HHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVF-KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av-~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
... .+++.||++||.||++.++|..+|++++++...
T Consensus 94 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 94 ELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp HHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 777 899999999999999999999999999987654
No 28
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.67 E-value=5.9e-16 Score=137.27 Aligned_cols=106 Identities=25% Similarity=0.438 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+..
T Consensus 14 ~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 88 (124)
T 1srr_A 14 GIRILLNEVFNKEGYQ-TFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVI--DENIRVIIMTAYGELD 88 (124)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHH--CTTCEEEEEESSCCHH
T ss_pred HHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHHh--CCCCCEEEEEccCchH
Confidence 3566778888888998 6799999999999988 7899999999 9999999999999987 4899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.+.++++.||++||.||++.++|...|+++++
T Consensus 89 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 89 MIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp HHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred HHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999987653
No 29
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.67 E-value=1.2e-15 Score=138.62 Aligned_cols=114 Identities=22% Similarity=0.374 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+......|||||+|+ ||+++|++++++|+.. .+.+|||++|+..+.+
T Consensus 14 ~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 90 (143)
T 3jte_A 14 TILQNIKFLLEIDGNE-VLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--TPHMAVIILTGHGDLD 90 (143)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH--CTTCEEEEEECTTCHH
T ss_pred HHHHHHHHHHHhCCce-EEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCeEEEEECCCCHH
Confidence 3566788888899998 6799999999999983126899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 120 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s 120 (687)
.+.++++.||++||.||++.++|..+|++++++.....
T Consensus 91 ~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~ 128 (143)
T 3jte_A 91 NAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLLM 128 (143)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765543
No 30
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.67 E-value=4.6e-16 Score=137.38 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|++.+..
T Consensus 12 ~~~~~l~~~L~~~~~~-v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 88 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYE-TLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKG 88 (124)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------
T ss_pred HHHHHHHHHHHHcCcE-EEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHH
Confidence 3466778888889998 6789999999999988 7899999999 9999999999999986445789999999999988
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
...++++.||++||.||++.++|...|+++++
T Consensus 89 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 89 DEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 31
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.67 E-value=7.6e-16 Score=134.93 Aligned_cols=106 Identities=23% Similarity=0.376 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. +.+|||++|+..+..
T Consensus 12 ~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~ 85 (120)
T 2a9o_A 12 PISDIIKFNMTKEGYE-VVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPILMLSAKDSEF 85 (120)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEEEEESCCSHH
T ss_pred HHHHHHHHHHHhcCcE-EEEecCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHhC---CCCCEEEEecCCchH
Confidence 3456777888888998 6799999999999988 7899999999 9999999999999975 689999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|...|++++++
T Consensus 86 ~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 86 DKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999988754
No 32
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.67 E-value=9.6e-16 Score=139.39 Aligned_cols=109 Identities=24% Similarity=0.273 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. ..+|||++|+..+..
T Consensus 15 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~l~~~l~~~---~~~~ii~ls~~~~~~ 88 (136)
T 2qzj_A 15 DNCQKLKGFLEEKGIS-IDLAYNCEEAIGKIFS--NKYDLIFLEIILSDGDGWTLCKKIRNV---TTCPIVYMTYINEDQ 88 (136)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHH--CCCSEEEEESEETTEEHHHHHHHHHTT---CCCCEEEEESCCCHH
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHccC---CCCCEEEEEcCCCHH
Confidence 3456777888888998 6799999999999998 8899999999 9999999999999976 389999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.||++||.||++.++|...|++++++...
T Consensus 89 ~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 124 (136)
T 2qzj_A 89 SILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNS 124 (136)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999877544
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.67 E-value=1.3e-15 Score=140.28 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHhh-----CCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 005631 4 LLAMLLLLCFEIAVMK-VITEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMS 76 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~-~V~~A~sg~eALe~L~~~-----~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmT 76 (687)
..+..+..+|+..|+. .|..+.++.+|++.+... ...|||||+|+ ||+++|++++++|++....+.+|||++|
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils 98 (149)
T 1i3c_A 19 ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLT 98 (149)
T ss_dssp HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEE
Confidence 3566778888888872 378999999999999741 13699999999 9999999999999986444789999999
Q ss_pred cCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 77 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 77 a~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
+..+...+.++++.||++||.||++.++|..+|+++++.+.
T Consensus 99 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 99 TSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp SCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987663
No 34
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.66 E-value=3.7e-16 Score=139.17 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+..
T Consensus 14 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 14 AAAETFKELLEMLGFQ-ADYVMSGTDALHAMST--RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp HHHHHHHHHHHHTTEE-EEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred HHHHHHHHHHHHcCCC-EEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 3567788888999997 7899999999999998 8899999999 9999999999999987556899999999999888
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
. .+++..||++||.||++.++|...|++++...
T Consensus 91 ~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 91 L-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp C-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred H-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 8 89999999999999999999999999887654
No 35
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.66 E-value=1.3e-15 Score=137.39 Aligned_cols=108 Identities=20% Similarity=0.391 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+..| +.+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+..
T Consensus 15 ~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 90 (133)
T 3b2n_A 15 LRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPGMTGLEVLAEIRKK--HLNIKVIIVTTFKRPG 90 (133)
T ss_dssp HHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHT--TCSCEEEEEESCCCHH
T ss_pred HHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHHH--CCCCcEEEEecCCCHH
Confidence 4556666676654 5557899999999999988 7899999999 9999999999999986 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|+++++..
T Consensus 91 ~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 91 YFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp HHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999887543
No 36
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.66 E-value=3e-16 Score=142.22 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC--CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~--mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+ ++|++++++|++. .+.+|||++|++.+
T Consensus 17 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~ 91 (136)
T 3kto_A 17 DARAALSKLLSPLDVT-IQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKR--GFHLPTIVMASSSD 91 (136)
T ss_dssp HHHHHHHHHHTTSSSE-EEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHT--TCCCCEEEEESSCC
T ss_pred HHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhC--CCCCCEEEEEcCCC
Confidence 3567788888889998 6799999999999987 8899999999 999 9999999999987 48999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.+.++++.||++||.||++.++|..+|++++.....
T Consensus 92 ~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 92 IPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp HHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999877643
No 37
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.66 E-value=1.8e-15 Score=136.61 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+. .||.+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 96 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTD 96 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCH
T ss_pred HHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCH
Confidence 345667778887 899877899999999999998 8899999999 999999999999998544689999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
..+.++++.||++||.||++.++|...|++++++..
T Consensus 97 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 97 DNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987643
No 38
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.66 E-value=1e-15 Score=137.03 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+ .||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+...
T Consensus 16 ~~~~l~~~l~-~~~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~ 91 (133)
T 3nhm_A 16 MRETLRLLLS-GEFD-CTTAADGASGLQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE 91 (133)
T ss_dssp HHHHHHHHHT-TTSE-EEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC---
T ss_pred HHHHHHHHHh-CCcE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH
Confidence 4566677777 8898 7899999999999998 8999999999 99999999999999875457999999999988777
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.++++.||++||.||++.++|...|++++++...
T Consensus 92 -~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 92 -GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp ---TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred -HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 8999999999999999999999999999987644
No 39
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.66 E-value=1.1e-16 Score=166.66 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+.++..+|+..||.++..|.+|.+||+.+.. ..|||||+|+ || +|||+++++.||+.. .+|||+||++.
T Consensus 171 ~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~piI~lT~~~-- 243 (286)
T 3n0r_A 171 VIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADGSSGIDAVKDILGRM---DVPVIFITAFP-- 243 (286)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTSCCTTTTTHHHHHHT---TCCEEEEESCG--
T ss_pred HHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCCCCHHHHHHHHHhcC---CCCEEEEeCCH--
Confidence 467888999999999943399999999999998 8999999999 99 799999999999983 99999999985
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
+...+|++.||+|||.|||++++|..+|.+++++...
T Consensus 244 ~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 244 ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 4577899999999999999999999999999987543
No 40
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.66 E-value=1.1e-15 Score=153.65 Aligned_cols=109 Identities=24% Similarity=0.394 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+..
T Consensus 34 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ii~lt~~~~~~ 108 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFE-VYTATNGAQALDRARE--TRPDAVILDVXMPGMDGFGVLRRLRAD--GIDAPALFLTARDSLQ 108 (250)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHT--TCCCCEEEEECSTTHH
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEECCCCHH
Confidence 3566778888889998 6799999999999988 7899999999 9999999999999987 4799999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.++++.||+|||.||++.++|..+|+.++++..
T Consensus 109 ~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 109 DKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp HHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999988753
No 41
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.66 E-value=1e-15 Score=137.15 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+.. ||.++..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. .+.+|||++|++.+.
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~-~~~~~ii~ls~~~~~ 89 (130)
T 1dz3_A 13 ELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAGF-EHQPNVIMLTAFGQE 89 (130)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHHC-SSCCEEEEEEETTCH
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcC-CCCCcEEEEecCCCH
Confidence 3456677777776 88866689999999999988 7899999999 99999999999999742 367899999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+.+.++++.||++||.||++.++|...|++++++
T Consensus 90 ~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 90 DVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp HHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999988754
No 42
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.66 E-value=1.1e-15 Score=137.92 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..++. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+
T Consensus 18 ~~~~~l~~~L~~~~~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 92 (137)
T 3hdg_A 18 DAREWLSTIISNHFPE-VWSAGDGEEGERLFGL--HAPDVIITDIRMPKLGGLEMLDRIKAG--GAKPYVIVISAFSEMK 92 (137)
T ss_dssp HHHHHHHHHHHTTCSC-EEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHT--TCCCEEEECCCCCCHH
T ss_pred HHHHHHHHHHHhcCcE-EEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEecCcChH
Confidence 3566777888888887 7899999999999998 7899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.||++||.||++.++|..+|+++++....
T Consensus 93 ~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 93 YFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp HHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999877644
No 43
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.65 E-value=8.3e-16 Score=137.41 Aligned_cols=107 Identities=26% Similarity=0.409 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+..
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ii~~t~~~~~~ 92 (130)
T 3eod_A 18 VFRSLLDSWFSSLGAT-TVLAADGVDALELLGG--FTPDLMICDIAMPRMNGLKLLEHIRNR--GDQTPVLVISATENMA 92 (130)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESCHHHHHHHHTT--CCCSEEEECCC-----CHHHHHHHHHT--TCCCCEEEEECCCCHH
T ss_pred HHHHHHHHHHHhCCce-EEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhc--CCCCCEEEEEcCCCHH
Confidence 3566778888999998 6789999999999987 8899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~-~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||+ +.++|..+|+++++.
T Consensus 93 ~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 93 DIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp HHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 999999999999999999 899999999988754
No 44
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.65 E-value=1.7e-15 Score=132.91 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+++..+.. ..||+||+|+ ||+++|++++++|+.. +.+|||++|+..+...
T Consensus 13 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~~ 86 (121)
T 1zh2_A 13 IRRFLRTALEGDGMR-VFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAVPVIVLSARSEESD 86 (121)
T ss_dssp HHHHHHHHHHTTTCE-EEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHTT---CCCCEEEEESCCSHHH
T ss_pred HHHHHHHHHhcCCCE-EEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhC---CCCcEEEEECCCCHHH
Confidence 456677788888998 6789999999999987 7899999999 9999999999999943 7899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||++||.||++.++|...|++++++.
T Consensus 87 ~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 87 KIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp HHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988764
No 45
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.65 E-value=1e-15 Score=142.63 Aligned_cols=107 Identities=33% Similarity=0.484 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCC--CccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTN--HIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~--~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+..||.++..+.++.+|++.+.. . .|||||+|+ ||+++|++++++|++. .+.+|||++|+..+
T Consensus 47 ~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~--~~~~~dliilD~~l~~~~g~~~~~~lr~~--~~~~~ii~ls~~~~ 122 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN--HYPNIDIVTLXITMPKMDGITCLSNIMEF--DKNARVIMISALGK 122 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HGGGCCEEEECSSCSSSCHHHHHHHHHHH--CTTCCEEEEESCCC
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh--cCCCCCEEEEeccCCCccHHHHHHHHHhh--CCCCcEEEEeccCc
Confidence 356778888888999965599999999999998 6 789999999 9999999999999987 58999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.+.+.++++.||++||.||++.++|..+|+++++
T Consensus 123 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 123 EQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987653
No 46
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.65 E-value=1.3e-15 Score=136.87 Aligned_cols=107 Identities=24% Similarity=0.394 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|||++|+..+...
T Consensus 15 ~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~ 89 (136)
T 1mvo_A 15 IVTLLQYNLERSGYD-VITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQ--KLMFPILMLTAKDEEFD 89 (136)
T ss_dssp HHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCCEEEEECTTCCCC
T ss_pred HHHHHHHHHHHCCcE-EEEecCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHcC--CCCCCEEEEECCCCHHH
Confidence 456677788888998 7799999999999988 7899999999 9999999999999987 47899999999999889
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+..+++.||++||.||++.++|...|++++++.
T Consensus 90 ~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 90 KVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp HHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999888653
No 47
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.65 E-value=1.3e-15 Score=139.05 Aligned_cols=111 Identities=22% Similarity=0.335 Sum_probs=99.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+|||++|+..+...+
T Consensus 21 ~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~ 97 (147)
T 2zay_A 21 LAASISALSQEGFD-IIQCGNAIEAVPVAVK--THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEE 97 (147)
T ss_dssp GHHHHHHHHHHTEE-EEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHH
T ss_pred HHHHHHHHHHcCCe-EEEeCCHHHHHHHHHc--CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHH
Confidence 45667777888998 6799999999999998 7899999999 999999999999998434689999999999999999
Q ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 85 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 85 v~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
.++++.||++||.||++.++|..+|++++++....
T Consensus 98 ~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 132 (147)
T 2zay_A 98 AQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYED 132 (147)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998876443
No 48
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.64 E-value=3.3e-15 Score=134.56 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCC-ccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~-pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..||. |..+.++.+|+..+.. .. |||||+|+ ||+++|++++++|++.. .+.+|||++|+..+.
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ii~~s~~~~~ 93 (136)
T 3hdv_A 18 VNREALILYLKSRGID-AVGADGAEEARLYLHY--QKRIGLMITDLRMQPESGLDLIRTIRASE-RAALSIIVVSGDTDV 93 (136)
T ss_dssp HHHHHHHHHHHHTTCC-EEEESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCEEEEEESSCCH
T ss_pred HHHHHHHHHHHHcCce-EEEeCCHHHHHHHHHh--CCCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCCEEEEeCCCCh
Confidence 3566778888888998 6789999999999987 66 99999999 99999999999999864 488999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.+.++++.||++||.||++.++|..+|++++...
T Consensus 94 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 94 EEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999887554
No 49
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.64 E-value=5.4e-16 Score=139.05 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||.++..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 87 (134)
T 3f6c_A 12 LAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGIIIIVSAKNDHF 87 (134)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHT--TCCSEEEEEECC---C
T ss_pred HHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCCCChHHHHHHHHhc--CCCCeEEEEeCCCChH
Confidence 356778888888999865589999999999998 7899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|..+|++++++.
T Consensus 88 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 88 YGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp THHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999987654
No 50
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.64 E-value=1.4e-15 Score=138.07 Aligned_cols=109 Identities=20% Similarity=0.317 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+|||++|+..+..
T Consensus 14 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~ 90 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYR-PITAFSGEECLEALNA--TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTP 90 (138)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHcCce-EEEeCCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChH
Confidence 3566777888889998 6689999999999998 8899999999 9999999999999986445789999999988766
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
....++..|+++||.||++.++|...|+.++++
T Consensus 91 ~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 91 EEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp HHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 666667778899999999999999999988754
No 51
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.64 E-value=9.3e-16 Score=150.73 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhh-----------CCCccEEEEcc-CCCCCHHHHHHHHHhhcC--CCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDL-----------TNHIDLVLTEV-MPCLSGVALLSKIMSHKT--RKN 69 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~-----------~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~--~p~ 69 (687)
..+.++..+|+..||..|..+.++.+|++++... ...|||||+|+ ||+++|++++++|++... .+.
T Consensus 72 ~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 72 ISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCC
Confidence 4567888899999994488999999999999871 12799999999 999999999999998521 378
Q ss_pred ceEEEEecCC-ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 70 LPVIMMSSLD-SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 70 iPVIvmTa~~-d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
+|||++|++. +.+.+.++++.||++||.||++ +|..+|++++++...
T Consensus 152 ~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 152 TPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred CcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 9999999998 8889999999999999999999 899999988776544
No 52
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.64 E-value=9.2e-17 Score=158.11 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=133.9
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +..+|++++.....+.+.++++.||++||.|
T Consensus 7 ~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~k 82 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVN 82 (237)
T ss_dssp EEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEES
T ss_pred EEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEeC
Confidence 47889999999999998 7899999999 99999999999999873 5667777777777899999999999999999
Q ss_pred C--CCHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCCCCCCccccccCCCCCCCcccccchh
Q 005631 99 P--IRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSIGVNGGDGSDDGSGTQSSWT 176 (687)
Q Consensus 99 P--~~~eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~~d~~~~g~~~~D~sG~G~~aqS~~~ 176 (687)
| ++..+|...|.+.+....... .+..... +... .+....|....++....
T Consensus 83 p~~~~~~~l~~~i~~~~~~~~~~~-----------------~~d~~~~---------~~~~--~v~~~~g~~~~~~~~~~ 134 (237)
T 3cwo_X 83 TAAVENPSLITQIAQTFGSQAVVV-----------------AIDAKRV---------DGEF--MVFTYSGKKNTGILLRD 134 (237)
T ss_dssp HHHHHCTHHHHHHHHHHTGGGEEE-----------------EEEEEES---------SSCE--EEEETTTTEEEEEEHHH
T ss_pred CcccChHHHHHHHHHHhCCCceEE-----------------Eeeeccc---------CCcE--EEEEeCCccccccCHHH
Confidence 9 777888877776653221100 0000000 0000 11112233334444332
Q ss_pred hhhhhcCCCCc-cccCCC--CCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 177 KKAVEVDSPRH-MSPSDQ--LAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 177 k~~~ea~S~~~-Vli~~G--EsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
..........+ |++ ++ ++||||++.++.||..+.|.+.|||+++ |.+.|+.+.+...+|-+
T Consensus 135 ~i~~~~~~~~~~vli-~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~----g~~~~~~~~~~~~~G~~ 198 (237)
T 3cwo_X 135 WVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASG----GAGKMEHFLEAFLAGAD 198 (237)
T ss_dssp HHHHHHHHTCSEEEE-EETTTTTCCSCCCHHHHHHHGGGCCSCEEEES----CCCSHHHHHHHHHHTCS
T ss_pred HHHHHhhcCCCeEEE-EecCCCCccccccHHHHHHHHHhcCCCEEecC----CCCCHHHHHHHHHcCcH
Confidence 22222344455 666 55 9999999999999999999999999999 99999999987555533
No 53
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.64 E-value=3.3e-15 Score=137.58 Aligned_cols=109 Identities=19% Similarity=0.357 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..+ +..|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|||++|+..+.
T Consensus 31 ~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~ 106 (150)
T 4e7p_A 31 MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRSE--KLETKVVVVTTFKRA 106 (150)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHHHT--TCSCEEEEEESCCCH
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCeEEEEeCCCCH
Confidence 35567777787775 2338899999999999988 8899999999 9999999999999987 589999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.+.++++.||++||.||++.++|..+|+++++..
T Consensus 107 ~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 107 GYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp HHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999887643
No 54
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.64 E-value=4e-16 Score=138.38 Aligned_cols=109 Identities=23% Similarity=0.320 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|++.+..
T Consensus 13 ~~~~~l~~~l~~~g~~-v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 89 (127)
T 2jba_A 13 PIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEE 89 (127)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHH
T ss_pred HHHHHHHHHHHHCCce-EEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHH
Confidence 3456777888888998 6799999999999987 7899999999 9999999999999986444789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|...|++++++
T Consensus 90 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 90 DRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp HHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988764
No 55
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.63 E-value=2.2e-16 Score=142.68 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..| |. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +.+|||++|++.+.
T Consensus 25 ~~~~~l~~~L~~~g~~~-v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~ 99 (135)
T 3snk_A 25 NFKRDVATRLDALAIYD-VRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALW--ATVPLIAVSDELTS 99 (135)
T ss_dssp HHHHHHHHHHHHTSSEE-EEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGG--TTCCEEEEESCCCH
T ss_pred HHHHHHHHHHhhcCCeE-EEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhC--CCCcEEEEeCCCCH
Confidence 35667888888899 98 6799999999999987 8899999999 99999999999999884 79999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+.+.++++.||++||.||++.++|..+|+++++.
T Consensus 100 ~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 100 EQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999887643
No 56
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.63 E-value=4.1e-15 Score=136.99 Aligned_cols=109 Identities=21% Similarity=0.358 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..| +.+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.
T Consensus 26 ~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~ 101 (152)
T 3eul_A 26 LFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSY--ELPTRVLLISAHDEP 101 (152)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHT--TCSCEEEEEESCCCH
T ss_pred HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCeEEEEEccCCH
Confidence 34566777777777 4556689999999999998 7899999999 9999999999999987 589999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+.++++.||++||.||++.++|..+|+++++..
T Consensus 102 ~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 102 AIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp HHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999988654
No 57
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.63 E-value=6.8e-15 Score=131.67 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhhC-----CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEE
Q 005631 4 LLAMLLLLCFEIAVM--KVITEATNGLQAWKILEDLT-----NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 75 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~--~~V~~A~sg~eALe~L~~~~-----~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvm 75 (687)
..+..+..+|+..|+ . |..+.++.+|++.+.... ..|||||+|+ ||+++|++++++|++....+.+|||++
T Consensus 13 ~~~~~l~~~L~~~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~l 91 (140)
T 1k68_A 13 ADIRLIQEALANSTVPHE-VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVL 91 (140)
T ss_dssp HHHHHHHHHHHTCSSCCE-EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEE
T ss_pred HHHHHHHHHHHhcCCCce-EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEE
Confidence 356778888898998 6 789999999999997410 4799999999 999999999999998743378999999
Q ss_pred ecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 76 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 76 Ta~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
|+..+.+.+.++++.|+++||.||++.++|...|+++++++...
T Consensus 92 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 135 (140)
T 1k68_A 92 STSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLST 135 (140)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred ecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998876543
No 58
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.63 E-value=9.3e-16 Score=139.10 Aligned_cols=112 Identities=23% Similarity=0.384 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+. .||. |..+.++.+|++.+.. ...|||||+|+ || +++|++++++|++.+..+.+|||++|+..+
T Consensus 15 ~~~~~l~~~L~~~~~~~-v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYD-FIEVENLKKFYSIFKD-LDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp HHHHHHHHHHHHHCCCE-EEEECSHHHHHTTTTT-CCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCC
T ss_pred HHHHHHHHHHHhccCcc-EEEECCHHHHHHHHhc-CCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 356677788888 8998 6699999999999864 15799999999 99 999999999999843368999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.+.++++.||++||.||++.++|..+|++++++..
T Consensus 93 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 93 PGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp HHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999886543
No 59
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.63 E-value=1.6e-15 Score=138.14 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ...|||||+|+ ||+ ++|++++++|++. +.+|||++|+..+.
T Consensus 16 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~ 90 (140)
T 3h5i_A 16 FQAKTIANILNKYGYT-VEIALTGEAAVEKVSG-GWYPDLILMDIELGEGMDGVQTALAIQQI---SELPVVFLTAHTEP 90 (140)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHT-TCCCSEEEEESSCSSSCCHHHHHHHHHHH---CCCCEEEEESSSSC
T ss_pred HHHHHHHHHHHHcCCE-EEEecChHHHHHHHhc-CCCCCEEEEeccCCCCCCHHHHHHHHHhC---CCCCEEEEECCCCH
Confidence 3567788888889998 6799999999999975 25799999999 995 9999999999976 68999999999998
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
+.+.++++.||++||.||++.++|..+|++++++++..
T Consensus 91 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 91 AVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp CCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999876553
No 60
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.62 E-value=1.5e-15 Score=138.94 Aligned_cols=110 Identities=21% Similarity=0.329 Sum_probs=91.0
Q ss_pred HHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 5 LAMLLLLCFE--IAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 5 ~r~ll~~lLe--~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.+..+..+|. ..||.++..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.
T Consensus 14 ~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~l~~~l~~~--~~~~~ii~ls~~~~~ 89 (141)
T 3cu5_A 14 TRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMDGIELVDNILKL--YPDCSVIFMSGYSDK 89 (141)
T ss_dssp HHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSCHHHHHHHHHHH--CTTCEEEEECCSTTT
T ss_pred HHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEeCCCcH
Confidence 3445556664 4688866699999999999987 7899999999 9999999999999986 589999999999998
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
+.+.++++.||++||.||++.++|..+|++++++...
T Consensus 90 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 126 (141)
T 3cu5_A 90 EYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQ 126 (141)
T ss_dssp CCC------CCCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998876543
No 61
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.62 E-value=1.3e-15 Score=137.99 Aligned_cols=114 Identities=17% Similarity=0.288 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+..
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~ 94 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFH-IISADSGGQCIDLLKK--GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPD 94 (142)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHT--CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCC
T ss_pred HHHHHHHHHHHHCCeE-EEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHH
Confidence 3566778888888998 7899999999999988 8899999999 9999999999999984346899999999999988
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcCC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 120 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~s 120 (687)
.+.++++.||++||.||++.++|...|++++++.+...
T Consensus 95 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 132 (142)
T 3cg4_A 95 AKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQT 132 (142)
T ss_dssp CSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998765543
No 62
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.62 E-value=1.6e-15 Score=154.01 Aligned_cols=110 Identities=27% Similarity=0.369 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +.+|||++|++.+.+
T Consensus 140 ~~~~~l~~~L~~~g~~-v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~piI~lt~~~~~~ 214 (254)
T 2ayx_A 140 INRRLLADQLGSLGYQ-CKTANDGVDALNVLSK--NHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGVTANALAE 214 (254)
T ss_dssp HHHHHHHHHHHHHTSE-EEEECCSHHHHHHHHH--SCCSEEEEEESSCSSCCHHHHHHHHHHH--CCSCEEEEESSTTSH
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHH
Confidence 4567788888889998 7899999999999998 8899999999 99999999999999874 789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
...++++.||++||.||++.++|...|++++++.+.
T Consensus 215 ~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~ 250 (254)
T 2ayx_A 215 EKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRK 250 (254)
T ss_dssp HHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998876543
No 63
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.62 E-value=9.2e-15 Score=132.49 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhhC--------CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceE
Q 005631 4 LLAMLLLLCFEIAVM--KVITEATNGLQAWKILEDLT--------NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 72 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~--~~V~~A~sg~eALe~L~~~~--------~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPV 72 (687)
..+..+..+|+..|+ . |..+.++.+|++.+.... ..|||||+|+ ||+++|++++++|++....+.+||
T Consensus 17 ~~~~~l~~~L~~~g~~~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 95 (149)
T 1k66_A 17 EDFSTFQRLLQREGVVNP-IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPV 95 (149)
T ss_dssp HHHHHHHHHHHHTTBCSC-EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCE
T ss_pred HHHHHHHHHHHHcCCCce-EEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeE
Confidence 356678888888998 6 789999999999997411 4799999999 999999999999998743378999
Q ss_pred EEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 73 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 73 IvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
|++|+..+.+.+.++++.|+++||.||++.++|...|+++++++...
T Consensus 96 i~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 142 (149)
T 1k66_A 96 VIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLDI 142 (149)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999877543
No 64
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.62 E-value=5.3e-15 Score=144.46 Aligned_cols=108 Identities=23% Similarity=0.335 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+.. +|.+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+.
T Consensus 16 ~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ii~ls~~~~~ 91 (215)
T 1a04_A 16 MLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREK--SLSGRIVVFSVSNHE 91 (215)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHS--CCCSEEEEEECCCCH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCcEEEEECCCCH
Confidence 3456677788776 48866899999999999988 7899999999 9999999999999987 589999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+.+.++++.||++||.||++.++|...|+.+++.
T Consensus 92 ~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 92 EDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp HHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999998764
No 65
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.62 E-value=7.6e-15 Score=131.21 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.++||+++.....
T Consensus 17 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~- 92 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQ-VEIAHNGFDAGIKLST--FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA- 92 (132)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH-
T ss_pred HHHHHHHHHHHHCCcE-EEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH-
Confidence 3566778888889998 7799999999999998 8999999999 999999999999998743356777777776655
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|..+|++++..
T Consensus 93 ~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 93 KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 888999999999999999999999999987654
No 66
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.62 E-value=1.3e-15 Score=139.04 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhC-CCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~-~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+..| |. |..+.++.+++..+.. . ..|||||+|+ ||+++|++++++|+.. .+.+|||++|+..+
T Consensus 31 ~~~~~l~~~L~~~g~~~-v~~~~~~~~~~~~~~~-~~~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ii~lt~~~~ 106 (146)
T 4dad_A 31 SRLAHLARLVGDAGRYR-VTRTVGRAAQIVQRTD-GLDAFDILMIDGAALDTAELAAIEKLSRL--HPGLTCLLVTTDAS 106 (146)
T ss_dssp HHHHHHHHHHHHHCSCE-EEEECCCHHHHTTCHH-HHTTCSEEEEECTTCCHHHHHHHHHHHHH--CTTCEEEEEESCCC
T ss_pred HHHHHHHHHHhhCCCeE-EEEeCCHHHHHHHHHh-cCCCCCEEEEeCCCCCccHHHHHHHHHHh--CCCCcEEEEeCCCC
Confidence 34567777888888 88 6789999988887654 2 4799999999 9999999999999987 58999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.+.++++.||++||.||++.++|..+|++++++.
T Consensus 107 ~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 107 SQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999988754
No 67
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.61 E-value=2e-15 Score=146.38 Aligned_cols=108 Identities=14% Similarity=0.267 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+.+
T Consensus 15 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 89 (208)
T 1yio_A 15 SVREGLRNLLRSAGFE-VETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAI--SDGIPIVFITAHGDIP 89 (208)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHT--TCCCCEEEEESCTTSC
T ss_pred HHHHHHHHHHHhCCce-EEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEeCCCCHH
Confidence 3566778888889998 6799999999999987 7899999999 9999999999999987 4899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||+|||.||++.++|...|+.+++..
T Consensus 90 ~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 90 MTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp CCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988764
No 68
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.61 E-value=1.4e-15 Score=137.86 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+.. |. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|||++|+..+.+
T Consensus 14 ~~~~~l~~~l~~~-~~-v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 89 (140)
T 3n53_A 14 FSRIELKNFLDSE-YL-VIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKE 89 (140)
T ss_dssp HHHHHHHHHHTTT-SE-EEEESSHHHHHHHHHH--HCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----
T ss_pred HHHHHHHHHHHhc-ce-EEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHH
Confidence 3456677778777 77 7799999999999998 7899999999 9999999999999987544899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.||++||.||++.++|..+|++++++...
T Consensus 90 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 90 AIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999876543
No 69
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.61 E-value=8.2e-15 Score=132.01 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..||.++..+.++.+|++.+.. ..|||||+|+ || +++|+++++.|++. +.+|||++|+..+.
T Consensus 20 ~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~ 94 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGALDGVETAARLAAG---CNLPIIFITSSQDV 94 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSSSCHHHHHHHHHHH---SCCCEEEEECCCCH
T ss_pred HHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCCHHHHHHHHHhC---CCCCEEEEecCCCH
Confidence 356677788888899944369999999999998 7899999999 98 79999999999987 68999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
..+.++++.||++||.||++.++|...|+++++.....
T Consensus 95 ~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 95 ETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp HHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999998876554
No 70
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.61 E-value=9.1e-15 Score=134.91 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|||++|+..+..
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 92 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCN-IITFTSPLDALEALKG--TSVQLVISDMRMPEMGGEVFLEQVAKS--YPDIERVVISGYADAQ 92 (154)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESCHHHHHHHHTT--SCCSEEEEESSCSSSCHHHHHHHHHHH--CTTSEEEEEECGGGHH
T ss_pred HHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHh--CCCCcEEEEecCCCHH
Confidence 3567788888889998 6799999999999988 7899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCC-CCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aG-A~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.| |++||.||++.++|...|+++++....
T Consensus 93 ~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 93 ATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp HHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999876543
No 71
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.61 E-value=9e-15 Score=134.79 Aligned_cols=108 Identities=16% Similarity=0.302 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCC-ccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~-pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+. ||. |..+.++.+|++.+.. .. |||||+|+ ||+++|+++++.|+.. .+.+|||++|+..+..
T Consensus 16 ~~~~l~~~L~~-~~~-v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 89 (151)
T 3kcn_A 16 LLNTLKRNLSF-DFE-VTTCESGPEALACIKK--SDPFSVIMVDMRMPGMEGTEVIQKARLI--SPNSVYLMLTGNQDLT 89 (151)
T ss_dssp HHHHHHHHHTT-TSE-EEEESSHHHHHHHHHH--SCCCSEEEEESCCSSSCHHHHHHHHHHH--CSSCEEEEEECGGGHH
T ss_pred HHHHHHHHhcc-Cce-EEEeCCHHHHHHHHHc--CCCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCcEEEEEECCCCHH
Confidence 45566777765 898 6799999999999987 65 59999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCC-CCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aG-A~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.| +++||.||++.++|..+|..++++...
T Consensus 90 ~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 90 TAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp HHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999877543
No 72
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.1e-14 Score=131.79 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhhC---CCccEEEEcc-CCCCCHHHHHHHHHhhc--CCCCceEEEE
Q 005631 4 LLAMLLLLCFEIAVM--KVITEATNGLQAWKILEDLT---NHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMM 75 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~--~~V~~A~sg~eALe~L~~~~---~~pDLVLlDl-MP~mdGleLL~~Ir~~~--~~p~iPVIvm 75 (687)
..+..+..+|+..|+ . |..+.++.+|++.+.... ..|||||+|+ ||+++|++++++|++.. ..+.+|||++
T Consensus 20 ~~~~~l~~~l~~~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~ 98 (146)
T 3ilh_A 20 IVNFLNTTIIRMTHRVEE-IQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLL 98 (146)
T ss_dssp HHHHHHHHHHHTTCCEEE-EEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCee-eeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEE
Confidence 456778888999998 5 789999999999997511 5699999999 99999999999999842 3589999999
Q ss_pred ecCCChHHHHHHHhCC-CCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 76 SSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 76 Ta~~d~~~av~Am~aG-A~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
|+..+...+.+++..| |++||.||++.++|..+|++++..
T Consensus 99 t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 99 SSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred eCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999999987643
No 73
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.60 E-value=5.2e-15 Score=161.56 Aligned_cols=109 Identities=27% Similarity=0.391 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.+..+.+||||+|++.+.+.
T Consensus 13 ~~~~l~~~L~~~~~~-v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~ 89 (459)
T 1w25_A 13 NVRLLEAKLTAEYYE-VSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGD 89 (459)
T ss_dssp HHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHH
T ss_pred HHHHHHHHHHHcCCE-EEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHH
Confidence 466778888888998 7899999999999988 7899999999 99999999999999865457899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||+|||.||++.++|..+|+.+++..
T Consensus 90 ~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 90 RIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp HHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
No 74
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.60 E-value=1.1e-14 Score=132.15 Aligned_cols=107 Identities=19% Similarity=0.305 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+.. |. |..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|+.. .+.+|||++|++.+...
T Consensus 13 ~~~~l~~~l~~~-~~-v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~ 86 (139)
T 2jk1_A 13 SLAAMKLALEDD-FD-VLTAQGAEAAIAILEE--EWVQVIICDQRMPGRTGVDFLTEVRER--WPETVRIIITGYTDSAS 86 (139)
T ss_dssp HHHHHHHHHTTT-SC-EEEESSHHHHHHHHHH--SCEEEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEEEESCTTCHH
T ss_pred HHHHHHHHhhcC-ce-EEEcCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCcEEEEeCCCChHH
Confidence 455666777665 87 6799999999999988 7899999999 9999999999999987 47899999999999899
Q ss_pred HHHHHhC-CCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 84 VFKCLSK-GAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 84 av~Am~a-GA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
+.+++.. ||++||.||++.++|...|+++++...
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 87 MMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 9999986 599999999999999999999887643
No 75
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.60 E-value=3.5e-15 Score=130.50 Aligned_cols=103 Identities=24% Similarity=0.334 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+..
T Consensus 12 ~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 86 (116)
T 3a10_A 12 NIRELLKEELQEEGYE-IDTAENGEEALKKFFS--GNYDLVILDIEMPGISGLEVAGEIRKK--KKDAKIILLTAYSHYR 86 (116)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHH--CTTCCEEEEESCGGGG
T ss_pred HHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcc--CCCCeEEEEECCcchH
Confidence 3466777888888998 7799999999999998 8899999999 9999999999999987 4789999999987655
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
.++++.||++||.||++.++|...|++++
T Consensus 87 --~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 87 --SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp --GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred --HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 78889999999999999999999988764
No 76
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.60 E-value=4.3e-15 Score=144.32 Aligned_cols=109 Identities=27% Similarity=0.397 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||.++..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... + .|||++|++.+.+
T Consensus 24 ~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~~~g~~~~~~l~~~~--~-~pii~lt~~~~~~ 98 (205)
T 1s8n_A 24 LIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASKR--I-APIVVLTAFSQRD 98 (205)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--C-SCEEEEEEGGGHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCChHHHHHHHHhcC--C-CCEEEEecCCCHH
Confidence 356677888888999955589999999999988 7899999999 99999999999999863 3 5999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.++++.||++||.||++.++|...|+.++++..
T Consensus 99 ~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 99 LVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp HHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887653
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.60 E-value=8.4e-15 Score=135.30 Aligned_cols=110 Identities=21% Similarity=0.398 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|||++|+..+..
T Consensus 14 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~~--~~~~pii~ls~~~~~~ 88 (155)
T 1qkk_A 14 DLRKAMQQTLELAGFT-VSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILAL--DPDLPMILVTGHGDIP 88 (155)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHcCcE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCEEEEECCCChH
Confidence 3456777888889998 6799999999999987 7899999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhc
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~ 118 (687)
.+.++++.||++||.||++.++|...|+++++....
T Consensus 89 ~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 89 MAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876543
No 78
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.60 E-value=9.6e-15 Score=131.58 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCceEEEEec
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSS 77 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-----~mdGleLL~~Ir~~~~~p~iPVIvmTa 77 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ || +++|++++++|+.. .+.+|||++|+
T Consensus 14 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~--~~~~~ii~ls~ 88 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSK-VITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--YRDLPVVLFTA 88 (140)
T ss_dssp HHHHHHHHHHTTTSSE-EEEECCHHHHHHHHHH--SCEEEEEEETTTTC-----CCHHHHHHHHHHH--CTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCCcE-EEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh--CcCCCEEEEEC
Confidence 3566778888888998 6799999999999998 8899999999 99 99999999999987 58999999999
Q ss_pred CCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 78 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 78 ~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+.+.+.++++.||++||.||++.++|..+|++++++.
T Consensus 89 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 89 YADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp GGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887643
No 79
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.60 E-value=8.3e-15 Score=143.55 Aligned_cols=109 Identities=24% Similarity=0.364 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+.+
T Consensus 13 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~lr~~--~~~~~ii~ls~~~~~~ 87 (225)
T 1kgs_A 13 DLADLITEALKKEMFT-VDVCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKSMRES--GVNTPVLMLTALSDVE 87 (225)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHT--TCCCCEEEEESSCHHH
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEeCCCCHH
Confidence 3566777888889998 6799999999999998 8899999999 9999999999999987 4899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.++++.||++||.||++.++|..+|+.++++..
T Consensus 88 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 88 YRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp HHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999987653
No 80
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.59 E-value=5e-15 Score=149.86 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. +.+|||++|++.+.+
T Consensus 48 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~DlvllD~~lp~~~G~~l~~~lr~~---~~~~iI~lt~~~~~~ 121 (249)
T 3q9s_A 48 DIANVLRMDLTDAGYV-VDHADSAMNGLIKARE--DHPDLILLDLGLPDFDGGDVVQRLRKN---SALPIIVLTARDTVE 121 (249)
T ss_dssp HHHHHHHHHHHTTTCE-EEEESSHHHHHHHHHH--SCCSEEEEECCSCHHHHHHHHHHHHTT---CCCCEEEEESCCSHH
T ss_pred HHHHHHHHHHHHCCCE-EEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHcC---CCCCEEEEECCCCHH
Confidence 3566778888889997 7899999999999998 8899999999 9999999999999974 789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.+|++.||++||.||++.++|..+|+.++++
T Consensus 122 ~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 122 EKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988754
No 81
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.59 E-value=1e-14 Score=134.43 Aligned_cols=108 Identities=15% Similarity=0.262 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+. .||.++..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.
T Consensus 16 ~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~ 91 (153)
T 3cz5_A 16 IVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPGPGGIEATRHIRQW--DGAARILIFTMHQGS 91 (153)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSSSCHHHHHHHHHHH--CTTCCEEEEESCCSH
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHh--CCCCeEEEEECCCCH
Confidence 345677778877 799855589999999999988 8899999999 9999999999999987 589999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+.+.++++.||++||.||++.++|..+|+++++.
T Consensus 92 ~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 92 AFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp HHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
No 82
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.59 E-value=1.5e-14 Score=130.51 Aligned_cols=107 Identities=16% Similarity=0.283 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCC---CCceEEEEecCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR---KNLPVIMMSSLD 79 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~---p~iPVIvmTa~~ 79 (687)
..+..+..+|+..||. |..+.++.+|++.+.. .. |+||+|+ ||+++|++++++|++.... +.++||++|+..
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~ 93 (136)
T 1dcf_A 18 VSRMVTKGLLVHLGCE-VTTVSSNEECLRVVSH--EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNT 93 (136)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHCCT--TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCC
T ss_pred HHHHHHHHHHHHcCCe-EEEeCCHHHHHHHHhc--cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCC
Confidence 3566778888888998 7799999999999865 44 9999999 9999999999999853211 234688899999
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+...+.++++.||++||.||++.++|..+|+++++
T Consensus 94 ~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 94 DKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp SHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988764
No 83
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.58 E-value=2.7e-14 Score=129.58 Aligned_cols=109 Identities=18% Similarity=0.372 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+.. ++.+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|||++|+..+
T Consensus 21 ~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~-- 94 (143)
T 2qv0_A 21 AQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPSLDGVLLAQNISQF--AHKPFIVFITAWKE-- 94 (143)
T ss_dssp HHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSSSCHHHHHHHHTTS--TTCCEEEEEESCCT--
T ss_pred HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcc--CCCceEEEEeCCHH--
Confidence 455566666654 88877789999999999998 8899999999 9999999999999986 47788999998743
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHhcC
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 119 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~~~ 119 (687)
.+.++++.||++||.||++.++|...|+++++.++..
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 95 HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999998877554
No 84
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.58 E-value=1.3e-14 Score=131.54 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+||+++|+++++.|++. .+.+|||++|+..+.+.
T Consensus 15 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~g~~~~~~l~~~--~~~~pii~ls~~~~~~~ 89 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFN-VIWAKNEQEAFTFLRR--EKIDLVFVDVFEGEESLNLIRRIREE--FPDTKVAVLSAYVDKDL 89 (142)
T ss_dssp HHHHHHHHHHGGGTCE-EEEESSHHHHHHHHTT--SCCSEEEEECTTTHHHHHHHHHHHHH--CTTCEEEEEESCCCHHH
T ss_pred HHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhc--cCCCEEEEeCCCCCcHHHHHHHHHHH--CCCCCEEEEECCCCHHH
Confidence 3566778888889998 6799999999999988 88999999998899999999999987 57999999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
+.++++.||++||.||++.++|...|++++++..
T Consensus 90 ~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 90 IINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp HHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999886543
No 85
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.58 E-value=1.1e-14 Score=128.18 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-CCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..||+||+|+ || +++|++++++|++....+.+|||++ +..+..
T Consensus 17 ~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~ 92 (127)
T 2gkg_A 17 LSATLRSALEGRGFT-VDETTDGKGSVEQIRR--DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGF 92 (127)
T ss_dssp HHHHHHHHHHHHTCE-EEEECCHHHHHHHHHH--HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGH
T ss_pred HHHHHHHHHHhcCce-EEEecCHHHHHHHHHh--cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCch
Confidence 456777788888998 6799999999999988 7899999999 99 9999999999998754589999999 888889
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
...++++.|+++||.||++.++|...|+++++
T Consensus 93 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 93 AQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp HHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999988764
No 86
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.57 E-value=9.7e-15 Score=143.78 Aligned_cols=109 Identities=25% Similarity=0.376 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|||++|++.+..
T Consensus 18 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~--~~~~~ii~lt~~~~~~ 92 (233)
T 1ys7_A 18 DVLASLERGLRLSGFE-VATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAM--DNDVPVCVLSARSSVD 92 (233)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCCEEEEECCCTTT
T ss_pred HHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEEEEEcCCCHH
Confidence 3566777888888998 6799999999999998 8899999999 9999999999999987 4899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
.+.++++.||++||.||++.++|...|+.++++..
T Consensus 93 ~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 93 DRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp CCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999987754
No 87
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.56 E-value=1.7e-14 Score=154.68 Aligned_cols=162 Identities=19% Similarity=0.277 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+.. ||++|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+ +|||++|+..+.
T Consensus 14 ~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~dGlell~~l~~~--~p-~pVIvlS~~~~~ 88 (349)
T 1a2o_A 14 LMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRL--RP-MPVVMVSSLTGK 88 (349)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHS--SC-CCEEEEECCTHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHhc--CC-CcEEEEECCCcc
Confidence 4567778888875 89878899999999999998 7899999999 9999999999999987 35 999999998875
Q ss_pred --HHHHHHHhCCCCEEEeCCCCH---------HHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCC
Q 005631 82 --GLVFKCLSKGAVDFLVKPIRK---------NELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSND 150 (687)
Q Consensus 82 --~~av~Am~aGA~DYL~KP~~~---------eeL~~~L~~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~ 150 (687)
+...++++.||+|||.||++. ++|...|+.+.+..... . .+ . ...
T Consensus 89 ~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~~~----------~----~~----~--~~~---- 144 (349)
T 1a2o_A 89 GSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAA----------H----KP----M--AAP---- 144 (349)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCGGG----------G----SC----C--CCC----
T ss_pred cHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhccc----------C----CC----c--ccc----
Confidence 458999999999999999983 67777776665422100 0 00 0 000
Q ss_pred CCCCCccccccCCCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 151 EDNNGSIGVNGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 151 ~~d~~~~g~~~~D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
... .+ .+ ..++..|++ .|+|+.|+|.+++.+|..+.+..- ||.|
T Consensus 145 ------~~~--------~~------~~----~~~~~~vv~-iGaS~gG~~al~~~l~~lp~~~~~-iviv 188 (349)
T 1a2o_A 145 ------TTL--------KA------GP----LLSSEKLIA-IGASTGGTEAIRHVLQPLPLSSPA-VIIT 188 (349)
T ss_dssp ------CCC--------CC------CC----CCCTTCEEE-EEECTTHHHHHHHHHTTCCTTCCE-EEEE
T ss_pred ------CCC--------CC------cc----cCCCceEEE-EecCcccHHHHHHHHHhCCCCCCe-EEEE
Confidence 000 00 00 013345666 599999999999999999988654 5554
No 88
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.56 E-value=1.4e-14 Score=152.49 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=94.9
Q ss_pred HHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFE-IAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe-~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|. ..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.+..+.+|||++|++.+..
T Consensus 30 ~~~~l~~~l~~~~~~~-v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 106 (358)
T 3bre_A 30 IGEAVRRSLASEAGID-FHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPT 106 (358)
T ss_dssp HHHHHHTTSSSCTTEE-EEEECCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHH
T ss_pred HHHHHHHHHHhccCcE-EEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHH
Confidence 3455666665 46888 6789999999999988 7899999999 9999999999999986545789999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.+.+|++.||+|||.||++.++|..+|..+++
T Consensus 107 ~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 107 VKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp HHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987754
No 89
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.55 E-value=1.9e-15 Score=163.59 Aligned_cols=109 Identities=24% Similarity=0.343 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCC-CccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~-~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+. .++. |..+.++.+|++.+.. . .|||||+|+ ||+|+|++++++|+.. .+.++||++|++.+
T Consensus 14 ~~~~~l~~~L~~~~~~~-v~~a~~g~eal~~l~~--~~~~DlvllDi~mP~~dG~ell~~l~~~--~~~~~ii~~s~~~~ 88 (400)
T 3sy8_A 14 FQRLVAVTALKKVVPGS-ILEAADGKEAVAILES--CGHVDIAICDLQMSGMDGLAFLRHASLS--GKVHSVILSSEVDP 88 (400)
T ss_dssp HHHHHHHHHHHHHCSEE-EEEESSHHHHHHHHHH--HSCEEEEEECSSCSSSCHHHHHHHHHHH--TCEEEEEESCCCCG
T ss_pred HHHHHHHHHHHhcCCcE-EEEecCHHHHHHHHhh--CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCceEEEEcCchH
Confidence 355667777776 6776 7799999999999986 4 799999999 9999999999999987 37788888888887
Q ss_pred h-----HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 81 M-----GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 81 ~-----~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
. ..+.+|++.||++||.||++.++|..+|.++++...
T Consensus 89 ~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 89 ILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp GGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 6 678899999999999999999999999999887643
No 90
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.55 E-value=1.8e-14 Score=131.55 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCC-CccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEec--C
Q 005631 4 LLAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS--L 78 (687)
Q Consensus 4 ~~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~-~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa--~ 78 (687)
..+..+..+|+.. ||.+|..+.++.+|++.+.. . .|||||+|+ ||+++|++++++|+... .+|||+++. .
T Consensus 24 ~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~~~g~~~~~~lr~~~---~~~iiil~~~~~ 98 (145)
T 3kyj_B 24 MMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA--QPNVDLILLDIEMPVMDGMEFLRHAKLKT---RAKICMLSSVAV 98 (145)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--CTTCCEEEECTTSCCCTTCHHHHHHHHHC---CCEEC-CBSSCS
T ss_pred HHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc--CCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CCCeEEEEEecc
Confidence 4567778888877 89867799999999999998 7 899999999 99999999999999873 389999998 6
Q ss_pred CChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 79 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 79 ~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
.+.+.+.++++.||++||.||++.++|...++
T Consensus 99 ~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 99 SGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp TTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred CChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 67778899999999999999999777666543
No 91
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.54 E-value=7.5e-14 Score=126.42 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhh----CCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 005631 4 LLAMLLLLCFEIAVM--KVITEATNGLQAWKILEDL----TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMS 76 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~--~~V~~A~sg~eALe~L~~~----~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmT 76 (687)
..+..+..+|+..|+ . |..+.++.+|++.+... ...|||||+|+ ||+++|+++++.|++....+.+|||++|
T Consensus 18 ~~~~~l~~~L~~~g~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls 96 (143)
T 2qvg_A 18 VDIQSVERVFHKISSLIK-IEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLT 96 (143)
T ss_dssp HHHHHHHHHHHHHCTTCC-EEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCce-EEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEe
Confidence 345677788888888 6 78999999999999731 14799999999 9999999999999987433789999999
Q ss_pred cCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 77 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 77 a~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
+..+.+.+.++++.||++||.||++.++|..++...
T Consensus 97 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 97 AAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp SCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999986654
No 92
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.54 E-value=6.4e-15 Score=146.03 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 4 LLAMLLLLCFEIAV-MKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G-~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+..+..+|+..| |.+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|++.+.
T Consensus 12 ~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ii~lt~~~~~ 87 (225)
T 3c3w_A 12 VVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPDGNGIELCRDLLSR--MPDLRCLILTSYTSD 87 (225)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETTEEHHHHHHHHHHH--CTTCEEEEGGGSSSH
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHHh--CCCCcEEEEECCCCH
Confidence 35667777888776 8867789999999999988 7899999999 9999999999999987 589999999999999
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
+.+.++++.||++||.||++.++|...|+.+++...
T Consensus 88 ~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 88 EAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999987653
No 93
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.53 E-value=2.3e-14 Score=141.14 Aligned_cols=106 Identities=28% Similarity=0.355 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. +.+|||++|++.+..
T Consensus 15 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~ii~lt~~~~~~ 88 (230)
T 2oqr_A 15 SLADPLAFLLRKEGFE-ATVVTDGPAALAEFDR--AGADIVLLDLMLPGMSGTDVCKQLRAR---SSVPVIMVTARDSEI 88 (230)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHH---CSCSEEEEECCHHHH
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEEEEeCCCcHH
Confidence 3566777888888998 6799999999999988 7899999999 9999999999999986 689999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|...|+.++++
T Consensus 89 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 89 DKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988765
No 94
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.53 E-value=3.8e-14 Score=130.48 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+.. |+..|..+.++.+|++.+.. ...|||||+|+ ||+++|+++++.|++. .+.+|||++|+..+.+
T Consensus 15 ~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 91 (154)
T 2qsj_A 15 IRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA-DNTVDLILLDVNLPDAEAIDGLVRLKRF--DPSNAVALISGETDHE 91 (154)
T ss_dssp HHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT-TCCCSEEEECC------CHHHHHHHHHH--CTTSEEEEC-----CH
T ss_pred HHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc-cCCCCEEEEeCCCCCCchHHHHHHHHHh--CCCCeEEEEeCCCCHH
Confidence 456667777766 88668899999999999974 25799999999 9999999999999987 5899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|+++++..
T Consensus 92 ~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 92 LIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp HHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999987654
No 95
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.52 E-value=1.7e-14 Score=128.94 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCh-
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM- 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~- 81 (687)
..+..+..+|+..++. |..+.++++|++.+.. . |||||+|+ ||+++|++++++|++. .+.+|||++|+..+.
T Consensus 14 ~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~ 87 (135)
T 3eqz_A 14 LTCNLLKTIVEPIFGN-VEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEH--KSPASLILISGYDSGV 87 (135)
T ss_dssp HHHHHHHHHHTTTCSC-EEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHT--TCCCEEEEEESSCHHH
T ss_pred HHHHHHHHHHHhhcce-eeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhC--CCCCCEEEEEeccchh
Confidence 3566778888888777 7899999999999876 6 99999999 9999999999999987 589999999999874
Q ss_pred ----HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 ----GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ----~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+.+.+++..||++||.||++.++|...|++++..
T Consensus 88 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 88 LHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 7778899999999999999999999999887643
No 96
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.52 E-value=1.1e-14 Score=143.92 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=92.6
Q ss_pred HHHHHHHHHH-hCCCeEEEEeCCHHHHHH-HHHhhCCCccEEEEcc-CCCCCHHHHHHHHHh-hcCCCCceEEEEecCCC
Q 005631 5 LAMLLLLCFE-IAVMKVITEATNGLQAWK-ILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS-HKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 5 ~r~ll~~lLe-~~G~~~V~~A~sg~eALe-~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~-~~~~p~iPVIvmTa~~d 80 (687)
.+..+..+|+ ..||.++..+.++.+++. ++.. ..|||||+|+ ||+++|++++++|++ . .+.+||||+|++.+
T Consensus 19 ~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~--~~~~~ii~lt~~~~ 94 (225)
T 3klo_A 19 QSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHIS--CPDAKEVIINCPQD 94 (225)
T ss_dssp HHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHHH--CTTCEEEEEEECTT
T ss_pred HHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHhh--CCCCcEEEEECCcc
Confidence 4566777777 579986566667777665 4666 7899999999 999999999999998 5 58999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
......+++.||+|||.||+++++|..+|+.+++.
T Consensus 95 ~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 95 IEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp CCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999988764
No 97
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.52 E-value=1.4e-13 Score=122.77 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCC-CccEEEEcc-CCC-CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTN-HIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~-~pDLVLlDl-MP~-mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..+..+..+|+..||. |..+.++.+|++.+.. . .|||||+|+ ||+ ++|++++++|++. .+.+|||++|+..+
T Consensus 16 ~~~~~l~~~L~~~g~~-v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 16 ILLLDFESTLTDAGFL-VTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREI--DPNMPIVYISGHAA 90 (132)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHHHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHH--CTTCCEEEEESSCC
T ss_pred HHHHHHHHHHHHcCCE-EEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhc--CCCCCEEEEeCCcc
Confidence 3456777888889998 6689999999999987 6 899999999 998 9999999999987 47999999999999
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.....+++..| +||.||++.++|..+|+++++..
T Consensus 91 ~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 91 LEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp TTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 88888888876 89999999999999999987654
No 98
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.52 E-value=1.3e-13 Score=129.64 Aligned_cols=104 Identities=33% Similarity=0.455 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+..+|+.. ++.+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. + +|||++|+..+..
T Consensus 37 ~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~l~~~lr~~~--~-~~ii~~s~~~~~~ 111 (164)
T 3t8y_A 37 MRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPNLNGIEALKLIMKKA--P-TRVIMVSSLTEEG 111 (164)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHHS--C-CEEEEEESSCCTT
T ss_pred HHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--C-ceEEEEecCCccc
Confidence 456677777766 55656689999999999988 7899999999 99999999999999873 5 8999999977754
Q ss_pred --HHHHHHhCCCCEEEeCCCC---------HHHHHHHHHHHH
Q 005631 83 --LVFKCLSKGAVDFLVKPIR---------KNELKNLWQHVW 113 (687)
Q Consensus 83 --~av~Am~aGA~DYL~KP~~---------~eeL~~~L~~al 113 (687)
.+.++++.||++||.||++ .++|...|++++
T Consensus 112 ~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 112 AAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp CHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 7889999999999999999 455555555544
No 99
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.52 E-value=3.9e-14 Score=141.15 Aligned_cols=106 Identities=24% Similarity=0.377 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. +.+|||++|+..+..
T Consensus 16 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~~~~~lr~~---~~~~ii~lt~~~~~~ 89 (238)
T 2gwr_A 16 SLAEMLTIVLRGEGFD-TAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMNGIDVCRVLRAD---SGVPIVMLTAKTDTV 89 (238)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECCGGGHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHTT---CCCCEEEEEETTCCS
T ss_pred HHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEeCCCCHH
Confidence 3566778888889998 6799999999999988 7899999999 9999999999999976 489999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
.+.++++.||++||.||++.++|...|+.++++
T Consensus 90 ~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 90 DVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999887643
No 100
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.51 E-value=1.1e-15 Score=134.42 Aligned_cols=107 Identities=26% Similarity=0.411 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+.
T Consensus 15 ~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~ 89 (124)
T 1dc7_A 15 IRWVLERALAGAGLT-CTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLPVIIMTAHSDLDA 89 (124)
T ss_dssp HHHHHHHHHTTTTCC-CEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHH--CTTSCCCCBCCSTTSTT
T ss_pred HHHHHHHHHHhCCcE-EEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhh--CCCCCEEEEecCCCHHH
Confidence 356677788888998 6799999999999987 7899999999 9999999999999987 58899999999999889
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||++||.||++.++|...|++++++.
T Consensus 90 ~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 90 AVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp TTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988653
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.51 E-value=4.9e-14 Score=121.69 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|++....+.+|||++|...+..
T Consensus 13 ~~~~l~~~l~~~g~~-v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~- 88 (119)
T 2j48_A 13 AATVVCEMLTAAGFK-VIWLVDGSTALDQLDL--LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD- 88 (119)
T ss_dssp HHHHHHHHHHHTTCE-EEEESCHHHHHHHHHH--HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS-
T ss_pred HHHHHHHHHHhCCcE-EEEecCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch-
Confidence 456777888889998 6789999999999998 7899999999 9999999999999987544789999999988766
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
.+++.|+++||.||++.++|...|++++
T Consensus 89 --~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 89 --PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp --HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred --hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999887653
No 102
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.49 E-value=8.8e-14 Score=126.25 Aligned_cols=106 Identities=20% Similarity=0.342 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhc---CCCCceEEEEecCC
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK---TRKNLPVIMMSSLD 79 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~---~~p~iPVIvmTa~~ 79 (687)
..+..+..+|+..|+. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. ..+.+|||++|+..
T Consensus 21 ~~~~~l~~~L~~~~~~-v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~ 97 (140)
T 3c97_A 21 ICRLVAAKALEKCTND-ITVVTNGLQALQAYQN--RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADT 97 (140)
T ss_dssp HHHHHHHHHHTTTCSE-EEEESSHHHHHHHHHH--SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCc-eEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCcc
Confidence 3566778888888998 7789999999999998 8899999999 99999999999999742 23689999999876
Q ss_pred ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 80 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 80 d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
...... ..||++||.||++.++|..+|+++++.
T Consensus 98 ~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 98 IDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred chhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 554433 789999999999999999999988754
No 103
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.49 E-value=1.7e-13 Score=134.25 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..| . |..+.++.+|++.+ ..|||||+|+ ||+++|+++++.|++. .+.+|||++|++.+.+
T Consensus 13 ~~~~~l~~~L~~~~-~-v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ii~lt~~~~~~ 84 (220)
T 1p2f_A 13 NILKKVSEKLQQLG-R-VKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKET--RPETWVILLTLLSDDE 84 (220)
T ss_dssp HHHHHHHHHHTTTE-E-EEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHH--CTTSEEEEEESCCSHH
T ss_pred HHHHHHHHHHHhCC-C-EEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEEcCCCHH
Confidence 35667778888888 5 78999999999887 3699999999 9999999999999987 4899999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||++.++|...|+.++++.
T Consensus 85 ~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 85 SVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999998764
No 104
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.48 E-value=4.4e-13 Score=120.95 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCC-CceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK-NLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p-~iPVIvmTa~~d~~ 82 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..||||| ||+++|+++++.|++. + .+|||++|+..+..
T Consensus 29 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~dlvi---~~~~~g~~~~~~l~~~---~~~~~ii~ls~~~~~~ 99 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFM-ADVTESLEDGEYLMDI--RNYDLVM---VSDKNALSFVSRIKEK---HSSIVVLVSSDNPTSE 99 (137)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESCHHHHHHHHHH--SCCSEEE---ECSTTHHHHHHHHHHH---STTSEEEEEESSCCHH
T ss_pred HHHHHHHHHHHHcCcE-EEEeCCHHHHHHHHHc--CCCCEEE---EcCccHHHHHHHHHhc---CCCccEEEEeCCCCHH
Confidence 3566777888889998 6799999999999998 8899999 7999999999999987 6 89999999999999
Q ss_pred HHHHHHhCCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 116 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~-~~eeL~~~L~~alr~~ 116 (687)
.+.++++.||++||.||+ +.++|...|++++++.
T Consensus 100 ~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 100 EEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp HHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred HHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999 9999999999886543
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.44 E-value=1.7e-13 Score=132.06 Aligned_cols=102 Identities=10% Similarity=0.138 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
.+..+..+|+..||. |..+.++.+|+ . ..|||||+|+ ||+++|+ +++.++... +.+|||++|++.+.+.
T Consensus 24 ~~~~l~~~L~~~g~~-v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~~ii~lt~~~~~~~ 93 (196)
T 1qo0_D 24 VSDALVLQLIRIGCS-VRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGT--PRTTLVALVEYESPAV 93 (196)
T ss_dssp HHHHHHHHHHHHTCE-EEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSC--TTCEEEEEECCCSHHH
T ss_pred HHHHHHHHHHHcCCe-EEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccC--CCCCEEEEEcCCChHH
Confidence 456677788888998 55677777766 3 5799999999 9999999 888888763 7899999999999999
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
+.++++.||++||.||++.++|...|..++++.
T Consensus 94 ~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 94 LSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp HHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
No 106
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.39 E-value=1.9e-12 Score=126.94 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
..+..+..+|+..||. |..+.++.+|++.+.. ..||||| ||+++|+++++.|++. .+.+|||++|++.+.+.
T Consensus 11 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~--~~~dlvi---lp~~~g~~~~~~lr~~--~~~~~ii~lt~~~~~~~ 82 (223)
T 2hqr_A 11 VLGGEIEKGLNVKGFM-ADVTESLEDGEYLMDI--RNYDLVM---VSDKNALSFVSRIKEK--HSSIVVLVSSDNPTSEE 82 (223)
T ss_dssp HHHHHHHHHHGGGTCC-EEEESSHHHHHHHHTT--SCCSEEE---ECCTTHHHHHHHHHHH--CTTSEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHHCCcE-EEEECCHHHHHHHHhc--CCCCEEE---eCCCCHHHHHHHHHhC--CCCCcEEEEECCCCHHH
Confidence 3566778888889998 5699999999999987 8899999 7999999999999987 24899999999999999
Q ss_pred HHHHHhCCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~-~~eeL~~~L~~alr~ 115 (687)
+.++++.||++||.||+ +.++|..+|+.++++
T Consensus 83 ~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 83 EVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp HHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999 999999999988654
No 107
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.36 E-value=8e-13 Score=119.37 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEe-cCCCh
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMS-SLDSM 81 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmT-a~~d~ 81 (687)
..+..+..+|+..||. |..+.++.+|++.+... ..|||||+|+ ||+++|+++++.|++. .+.+|||++| +..+.
T Consensus 26 ~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~ 101 (138)
T 2b4a_A 26 SHATLIQYHLNQLGAE-VTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLSIFSLLDIVKEQ--TKQPSVLILTTGRHEL 101 (138)
T ss_dssp HHHHHHHHHHHHTTCE-EEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSCHHHHHHHHTTS--SSCCEEEEEESCC--C
T ss_pred HHHHHHHHHHHHcCCE-EEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCEEEEECCCCCH
Confidence 3566778888888998 78999999999988641 3699999999 9999999999999985 5899999999 88777
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.. .+++ +++||.||++.++|...|+++++
T Consensus 102 ~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 102 IE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred HH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 66 6666 99999999999999999987653
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.31 E-value=2.2e-12 Score=151.27 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=98.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCC-CccEEEEcc-CCC----CCHHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 6 AMLLLLCFEIAVMKVITEATNGLQAWKILEDLTN-HIDLVLTEV-MPC----LSGVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~-~pDLVLlDl-MP~----mdGleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
+..+...|+..||+ |..+.++++|+..+.. . .||+||+|+ ||+ ++|++++++||+. .+.+||||+|+..
T Consensus 21 ~~~L~~~L~~~g~~-v~~a~~g~~al~~~~~--~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~--~~~iPIi~lTa~~ 95 (755)
T 2vyc_A 21 VERLADALSQQNVT-VIKSTSFDDGFAILSS--NEAIDCLMFSYQMEHPDEHQNVRQLIGKLHER--QQNVPVFLLGDRE 95 (755)
T ss_dssp HHHHHHHHHHTTCE-EEEESSHHHHHHHHTT--TCCCSEEEEECCCCSHHHHHHHHHHHHHHHHH--STTCCEEEEECHH
T ss_pred HHHHHHHHHhCCCE-EEEECCHHHHHHHHhc--CCCCcEEEEeCCCCcccccccHHHHHHHHHHh--CCCCCEEEEecCC
Confidence 67788899999998 7899999999999987 5 499999999 999 9999999999988 4789999999988
Q ss_pred C-hHHHHHHHhCCCCEEEeCCCCHHH-HHHHHHHHHHHHh
Q 005631 80 S-MGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWRRCH 117 (687)
Q Consensus 80 d-~~~av~Am~aGA~DYL~KP~~~ee-L~~~L~~alr~~~ 117 (687)
+ .+..+.++..||+|||+||++..| |...|+.++++..
T Consensus 96 ~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 96 KALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred cchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 7 888899999999999999999999 8899999998753
No 109
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.29 E-value=3.2e-12 Score=130.41 Aligned_cols=90 Identities=17% Similarity=0.288 Sum_probs=73.3
Q ss_pred HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEI-AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~-~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+..+...|.. .||. |. +.++.++++.+.. ..|||||+|+ ||+++|++++++|++. .+||||+|++.+.+
T Consensus 16 ~~~~l~~~L~~~~~~~-v~-~~~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~----~~pvi~lt~~~~~~ 87 (259)
T 3luf_A 16 IRRMLIQAIAQQTGLE-ID-AFDTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER----GLPVVILTADISED 87 (259)
T ss_dssp HHHHHHHHHHHHHCCE-EE-EESSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT----TCCEEEEECC-CHH
T ss_pred HHHHHHHHHHhcCCeE-EE-EeChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC----CCCEEEEEccCCHH
Confidence 45555566654 5776 54 5566677776665 6899999999 9999999999999864 58999999999999
Q ss_pred HHHHHHhCCCCEEEeCCCCH
Q 005631 83 LVFKCLSKGAVDFLVKPIRK 102 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~ 102 (687)
.+.+|+++||+|||+||+..
T Consensus 88 ~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 88 KREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp HHHHHHHTTCCEEEECSSHH
T ss_pred HHHHHHHCCCcEEEeCCchh
Confidence 99999999999999999643
No 110
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.03 E-value=5.7e-11 Score=124.62 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=66.8
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+++|.+..++.........+.++.+||| +||+||||+++||+||..+.|.+.|||.|| |+++|++++|++||||.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi-~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~----~~~~~~~l~~~~lfg~~ 77 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLI-HGDSGTGKELVARALHACSARSDRPLVTLN----CAALNESLLESELFGHE 77 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEE-ESCTTSCHHHHHHHHHHHSSCSSSCCCEEE----CSSCCHHHHHHHHTCCC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEE-ECCCCchHHHHHHHHHHhCcccCCCeEEEe----CCCCChHHHHHHhcCcc
Confidence 4677777776666666666789999999 899999999999999999999999999999 99999999999999995
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.71 E-value=1.6e-07 Score=102.36 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=85.3
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
..|.. .+. +....++.+++ .+.. ..||+|++|+ ||+|+|+++++.|+.......+|||++|+.++.....+++.
T Consensus 170 ~~L~~-~~~-~~~~~~~~~~~-~~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~ 244 (459)
T 1w25_A 170 AELGV-EHR-PVIESDPEKAK-ISAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALE 244 (459)
T ss_dssp HHHTT-TSE-EEEECCHHHHH-HHHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHH
T ss_pred HHHhc-ccc-eeeccCHHHHh-hhcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHh
Confidence 33433 344 55778888886 3445 6799999999 99999999999999876667899999999999999999999
Q ss_pred CCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 90 KGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 90 aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
.|+.||+.||+...+|...+..++++.
T Consensus 245 ~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 245 IGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp TTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888777654
No 112
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.60 E-value=1.4e-08 Score=102.90 Aligned_cols=75 Identities=5% Similarity=-0.078 Sum_probs=60.9
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
+++|.+..++.........+.++.+|+| +||+||||+++|++||..+.|...|||.|+ |..+++.+++++|||+.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll-~G~~GtGKt~la~~i~~~~~~~~~~~~~v~----~~~~~~~~~~~~l~g~~ 81 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLI-IGERGTGKELIASRLHYLSSRWQGPFISLN----CAALNENLLDSELFGHE 81 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEE-ECCTTSCHHHHHHHHHHTSTTTTSCEEEEE----GGGSCHHHHHHHHHCCC
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEE-ECCCCCcHHHHHHHHHHhcCccCCCeEEEe----cCCCChhHHHHHhcCCc
Confidence 4566665555444434444577889999 799999999999999999999999999999 99999999999999985
No 113
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.53 E-value=2.3e-08 Score=93.06 Aligned_cols=64 Identities=6% Similarity=-0.125 Sum_probs=52.5
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
+++|.+..++.........+.++.+|+| .||+||||+++|++||..+.|.+.||| ++ |+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll-~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~----~~~~~~~ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWL-YGAPGTGRMTGARYLHQFGRNAQGEFV-YR----ELTPDNA 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEE-ESSTTSSHHHHHHHHHHSSTTTTSCCE-EE----ECCTTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEE-ECCCCCCHHHHHHHHHHhCCccCCCEE-EE----CCCCCcc
Confidence 4567766666555555555689999999 799999999999999999999999999 99 9998765
No 114
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.38 E-value=9.6e-11 Score=131.05 Aligned_cols=176 Identities=10% Similarity=0.019 Sum_probs=92.7
Q ss_pred ccEEEEcc-CCCCCHHHHHHHHHhhc--CCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH-------
Q 005631 41 IDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ------- 110 (687)
Q Consensus 41 pDLVLlDl-MP~mdGleLL~~Ir~~~--~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~------- 110 (687)
.++|.+|- +....|+.+-..++-.+ ..+....|+|+ .++.+++||+.||+|||+||+..++|+.++.
T Consensus 79 ~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~---~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~ 155 (489)
T 3hu3_A 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL---PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVH 155 (489)
T ss_dssp TTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEE---EBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEE
T ss_pred CCEEEecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEc---CCCcccccccchhHHHHhHHHHhhcCcccccCCEEEec
Confidence 45555555 54444444444432211 12344445555 3567888999999999999998877765554
Q ss_pred ---HHHHHHhcCCCCCCCcchhhhhhhccccccccCCCCCCCCC-CCCCccccccCCCCCCCcccccchhhhhhh-----
Q 005631 111 ---HVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDE-DNNGSIGVNGGDGSDDGSGTQSSWTKKAVE----- 181 (687)
Q Consensus 111 ---~alr~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s~~~-~d~~~~g~~~~D~sG~G~~aqS~~~k~~~e----- 181 (687)
++++........... .. ..+........... ... ...........++.|....++.........
T Consensus 156 ~~~~~~~~~~~~~~~~~~-~~-----~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~ 228 (489)
T 3hu3_A 156 GGMRAVEFKVVETDPSPY-CI-----VAPDTVIHCEGEPI-KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPA 228 (489)
T ss_dssp ETTEEEEEEEEEEESSSE-EE-----ECTTCEEECCSSCB-CHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHH
T ss_pred CCCceEEEEEEeecCCCc-eE-----EcCCeEEEEccCcc-cccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHH
Confidence 111110000000000 00 00000000000000 000 000001122345666655554433333222
Q ss_pred ------cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhh
Q 005631 182 ------VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCE 234 (687)
Q Consensus 182 ------a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ 234 (687)
+..+.+||| +|++||||+++||+||..+ +.|||.|+ |..++..+.
T Consensus 229 ~~~~~g~~~~~~vLL-~GppGtGKT~lAraia~~~---~~~fv~vn----~~~l~~~~~ 279 (489)
T 3hu3_A 229 LFKAIGVKPPRGILL-YGPPGTGKTLIARAVANET---GAFFFLIN----GPEIMSKLA 279 (489)
T ss_dssp HHHHHTCCCCCEEEE-ECSTTSSHHHHHHHHHHHC---SSEEEEEE----HHHHHTSCT
T ss_pred HHHhcCCCCCCcEEE-ECcCCCCHHHHHHHHHHHh---CCCEEEEE----chHhhhhhc
Confidence 467778999 8999999999999999876 57999999 999986544
No 115
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.10 E-value=6.1e-07 Score=83.27 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=48.1
Q ss_pred CCCCCCcccccchhhhhhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhh
Q 005631 163 DGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERC 233 (687)
Q Consensus 163 D~sG~G~~aqS~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L 233 (687)
+++|.+..++.........+.++.+|+| .||+||||+++|++||..+. |||.++ |..+++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll-~G~~GtGKt~lA~~i~~~~~----~~~~~~----~~~~~~~~ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFL-TGEAGSPFETVARYFHKNGT----PWVSPA----RVEYLIDM 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEE-EEETTCCHHHHHGGGCCTTS----CEECCS----STTHHHHC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEE-ECCCCccHHHHHHHHHHhCC----CeEEec----hhhCChHh
Confidence 4566666665544444444688899999 79999999999999999886 999999 99988765
No 116
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.55 E-value=7.5e-06 Score=97.06 Aligned_cols=50 Identities=6% Similarity=-0.113 Sum_probs=44.8
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSR 241 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh 241 (687)
+||+ .|++||||+++|++||..+.+.+.+||.|| |..+++.+.+++|||.
T Consensus 590 ~vLl-~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~----~~~~~~~~~~s~l~g~ 639 (854)
T 1qvr_A 590 SFLF-LGPTGVGKTELAKTLAATLFDTEEAMIRID----MTEYMEKHAVSRLIGA 639 (854)
T ss_dssp EEEE-BSCSSSSHHHHHHHHHHHHHSSGGGEEEEC----TTTCCSSGGGGGC---
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhcCCCCcEEEEe----chhccchhHHHHHcCC
Confidence 5777 899999999999999999999999999999 9999999999999964
No 117
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.00011 Score=75.29 Aligned_cols=53 Identities=6% Similarity=-0.132 Sum_probs=48.0
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
.+|++ .|++||||.++|++||....+...+|+.++ |..+++....+.+||+..
T Consensus 48 ~~~ll-~G~~GtGKt~la~~la~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~ 100 (311)
T 4fcw_A 48 GSFLF-LGPTGVGKTELAKTLAATLFDTEEAMIRID----MTEYMEKHAVSRLIGAPP 100 (311)
T ss_dssp EEEEE-ESCSSSSHHHHHHHHHHHHHSCGGGEEEEE----GGGCCSTTHHHHHHCCCT
T ss_pred eEEEE-ECCCCcCHHHHHHHHHHHHcCCCcceEEee----cccccccccHHHhcCCCC
Confidence 35777 799999999999999999999999999999 999999998999998654
No 118
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.05 E-value=0.00083 Score=78.45 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=77.8
Q ss_pred HHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 10 LLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 10 ~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
...|+..||+ |..+.++++|+..++. +..+++||+|+ |+ +.+++++|++. ...+||++++...+...+....
T Consensus 23 ~~~Le~~g~~-V~~a~s~~Da~~~i~~-~~~i~avIld~d~~---~~~ll~~Ir~~--~~~iPVFl~~~~~~~~~~~~~~ 95 (715)
T 3n75_A 23 HRALERLNFQ-IVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKM--NENLPLYAFANTYSTLDVSLND 95 (715)
T ss_dssp HHHHHHTTCE-EECCSSHHHHHHHHHH-CTTEEEEEEEHHHH---HHHHHHHHHHH--CTTCEEEEECCTTCCCCGGGTT
T ss_pred HHHHHHCCcE-EEEeCCHHHHHHHHHh-CCCceEEEEecccc---HHHHHHHHHHh--CCCCCEEEEecCCcccccchhh
Confidence 3677888999 7899999999999987 34599999999 86 78999999988 5899999999886544332222
Q ss_pred hCCCCEEEeCCCC-HHHHHHHHHHHHHHH
Q 005631 89 SKGAVDFLVKPIR-KNELKNLWQHVWRRC 116 (687)
Q Consensus 89 ~aGA~DYL~KP~~-~eeL~~~L~~alr~~ 116 (687)
-.++.+|+.+..+ .+.+...|.++.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 96 LRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp SCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4588999999864 555555666666554
No 119
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.49 E-value=0.00056 Score=72.55 Aligned_cols=48 Identities=4% Similarity=-0.105 Sum_probs=38.9
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
.+.+||+ .|++||||+++|++||... +.||+.++ |..+ .++.+||++.
T Consensus 50 ~~~~vll-~GppGtGKT~la~~ia~~~---~~~~~~~~----~~~l----~~~~~~g~~~ 97 (363)
T 3hws_A 50 GKSNILL-IGPTGSGKTLLAETLARLL---DVPFTMAD----ATTL----TEAGYVGEDV 97 (363)
T ss_dssp CCCCEEE-ECCTTSSHHHHHHHHHHHT---TCCEEEEE----HHHH----TTCHHHHHHH
T ss_pred CCCeEEE-ECCCCCCHHHHHHHHHHHc---CCCEEEec----hHHh----cccccccccH
Confidence 5567888 7999999999999999887 56999999 9864 4455667653
No 120
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.20 E-value=0.0077 Score=58.38 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=62.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc--CCCCCHH--HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-----
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV--MPCLSGV--ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL----- 96 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl--MP~mdGl--eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL----- 96 (687)
+..+.++.+... ...+++++++ ++.++|+ +++++++.. ..+|||.+++..+.+.+.++++.||++++
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 556666666651 3456889986 6667775 466666654 58999999999999999999999999995
Q ss_pred -eCCCCHHHHHHHHH
Q 005631 97 -VKPIRKNELKNLWQ 110 (687)
Q Consensus 97 -~KP~~~eeL~~~L~ 110 (687)
.+|+++.+++..+.
T Consensus 207 ~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 207 HFREIDVRELKEYLK 221 (237)
T ss_dssp HTTSSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 78999999877654
No 121
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.09 E-value=0.014 Score=51.83 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=56.2
Q ss_pred CCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 39 NHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 39 ~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..-|||+|+. +|. .|...+..+..-+|++=..-+.+.+++.+..||+ ||..|+.+.-|.++|+..|+..
T Consensus 49 ~~AdlIfCEYlLLPe--------~ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 49 LSADLVVCEYSLLPR--------EIRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp TTEEEEEEEGGGSCT--------TCCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred ccceeEEEeeecChH--------HhcCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 4569999999 775 2444444456668888888889999999999999 9999999999999998887754
No 122
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.01 E-value=0.0016 Score=75.95 Aligned_cols=45 Identities=4% Similarity=-0.082 Sum_probs=40.9
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENF 236 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ES 236 (687)
+||+ .|++||||+++|++||....+.+.|||.+| |..+++.+.++
T Consensus 523 ~~Ll-~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~----~s~~~~~~~~~ 567 (758)
T 3pxi_A 523 SFIF-LGPTGVGKTELARALAESIFGDEESMIRID----MSEYMEKHSTS 567 (758)
T ss_dssp EEEE-ESCTTSSHHHHHHHHHHHHHSCTTCEEEEE----GGGGCSSCCCC
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhcCCCcceEEEe----chhcccccccc
Confidence 3676 899999999999999999999999999999 99999887665
No 123
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.91 E-value=0.0022 Score=65.95 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=34.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
..+.+|+| +|++||||+++|++||... +.+|+.++ |..++.
T Consensus 36 ~~~~~vll-~G~~GtGKT~la~~i~~~~---~~~~~~~~----~~~~~~ 76 (324)
T 1hqc_A 36 EPLEHLLL-FGPPGLGKTTLAHVIAHEL---GVNLRVTS----GPAIEK 76 (324)
T ss_dssp SCCCCCEE-ECCTTCCCHHHHHHHHHHH---TCCEEEEC----TTTCCS
T ss_pred CCCCcEEE-ECCCCCCHHHHHHHHHHHh---CCCEEEEe----ccccCC
Confidence 45677888 8999999999999999866 46899999 887754
No 124
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.84 E-value=0.0022 Score=66.69 Aligned_cols=62 Identities=13% Similarity=-0.074 Sum_probs=42.4
Q ss_pred cCCCCCCCcccccchhhhhhh---cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 161 GGDGSDDGSGTQSSWTKKAVE---VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 161 ~~D~sG~G~~aqS~~~k~~~e---a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..+++|+...++......... .....+||| +|++||||+++|++|+.. .+.+|+.++ |..++
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll-~G~~GtGKT~la~~ia~~---~~~~~~~~~----~~~~~ 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILF-SGPAGLGKTTLANIISYE---MSANIKTTA----APMIE 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEE-ECSTTSSHHHHHHHHHHH---TTCCEEEEE----GGGCC
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEE-ECcCCCCHHHHHHHHHHH---hCCCeEEec----chhcc
Confidence 356777655543322111111 245567888 899999999999999765 467999999 88765
No 125
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.41 E-value=0.0029 Score=65.59 Aligned_cols=45 Identities=11% Similarity=-0.082 Sum_probs=34.6
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCccc----CCCceecCChhhhhhhhhhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEIT----GSRRVPVTAAKECQDHEERCE 234 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~----~~pFV~vn~~~~C~aipe~L~ 234 (687)
..+..+||+ +|++||||.++|++||....|. ..+ ++ |...+..+.
T Consensus 42 ~~~~~~vLl-~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~----~~~~~~~~~ 90 (350)
T 1g8p_A 42 DPGIGGVLV-FGDRGTGKSTAVRALAALLPEIEAVEGCP---VS----SPNVEMIPD 90 (350)
T ss_dssp CGGGCCEEE-ECCGGGCTTHHHHHHHHHSCCEEEETTCT---TC----CSSGGGSCT
T ss_pred CCCCceEEE-ECCCCccHHHHHHHHHHhCcccccccccc---cc----ccccccccc
Confidence 345667888 7999999999999999988762 234 36 777776655
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.17 E-value=0.0054 Score=58.86 Aligned_cols=45 Identities=4% Similarity=-0.076 Sum_probs=38.5
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCEN 235 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~E 235 (687)
.+|+| .|++||||.++|++||....+.+.+++.++ |..+...+.+
T Consensus 55 ~~~~l-~G~~GtGKT~la~~i~~~~~~~~~~~~~~~----~~~~~~~~~~ 99 (202)
T 2w58_A 55 KGLYL-HGSFGVGKTYLLAAIANELAKRNVSSLIVY----VPELFRELKH 99 (202)
T ss_dssp CEEEE-ECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----HHHHHHHHHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----hHHHHHHHHH
Confidence 67888 799999999999999999888888999899 8876665544
No 127
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.15 E-value=0.0049 Score=71.76 Aligned_cols=48 Identities=6% Similarity=-0.077 Sum_probs=42.8
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRD 242 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~ 242 (687)
++|+ .|++||||+++|++||... +.+||.++ |..+++.+..+.|||+.
T Consensus 490 ~~ll-~G~~GtGKT~la~~la~~l---~~~~~~i~----~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 490 SFLF-AGPTGVGKTEVTVQLSKAL---GIELLRFD----MSEYMERHTVSRLIGAP 537 (758)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHHH---TCEEEEEE----GGGCSSSSCCSSSCCCC
T ss_pred EEEE-ECCCCCcHHHHHHHHHHHh---cCCEEEEe----chhhcchhhHhhhcCCC
Confidence 4677 8999999999999999887 46999999 99999998899998874
No 128
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.12 E-value=0.0078 Score=62.26 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=35.0
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
..+..||+ .|++||||.++|++||.... .+|+.|+ |..+...
T Consensus 47 ~~~~~vLL-~Gp~GtGKT~la~ala~~~~---~~~i~v~----~~~l~~~ 88 (301)
T 3cf0_A 47 TPSKGVLF-YGPPGCGKTLLAKAIANECQ---ANFISIK----GPELLTM 88 (301)
T ss_dssp CCCSEEEE-ECSSSSSHHHHHHHHHHHTT---CEEEEEC----HHHHHHH
T ss_pred CCCceEEE-ECCCCcCHHHHHHHHHHHhC---CCEEEEE----hHHHHhh
Confidence 45566888 79999999999999998764 6999999 9887543
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.01 E-value=0.011 Score=59.67 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=29.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+.+||+ +|++||||.++|++||.. .+.|||.++
T Consensus 62 ~~~~~vLl-~G~~GtGKT~la~~ia~~---~~~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLL-EGPPHSGKTALAAKIAEE---SNFPFIKIC 96 (272)
T ss_dssp CSEEEEEE-ECSTTSSHHHHHHHHHHH---HTCSEEEEE
T ss_pred CCCeEEEE-ECCCCCcHHHHHHHHHHH---hCCCEEEEe
Confidence 34455888 899999999999999986 457999999
No 130
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.95 E-value=0.01 Score=63.03 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=34.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
....+||+ .|++||||.++|++||... +.||+.++ |..+.+ +.++|.+.
T Consensus 70 ~~~~~ill-~Gp~GtGKT~la~~la~~l---~~~~~~~~----~~~~~~----~~~~g~~~ 118 (376)
T 1um8_A 70 LSKSNILL-IGPTGSGKTLMAQTLAKHL---DIPIAISD----ATSLTE----AGYVGEDV 118 (376)
T ss_dssp CCCCCEEE-ECCTTSSHHHHHHHHHHHT---TCCEEEEE----GGGCC------------C
T ss_pred cCCCCEEE-ECCCCCCHHHHHHHHHHHh---CCCEEEec----chhhhh----cCcCCccH
Confidence 35566888 7999999999999999877 56999999 988754 34556543
No 131
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.81 E-value=0.016 Score=58.10 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=33.8
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
..+.+||+ +|++||||.++|++|+... ..||+.++ |..+...
T Consensus 42 ~~~~~vll-~G~~GtGKT~la~~la~~~---~~~~~~v~----~~~~~~~ 83 (268)
T 2r62_A 42 KIPKGVLL-VGPPGTGKTLLAKAVAGEA---HVPFFSMG----GSSFIEM 83 (268)
T ss_dssp CCCSCCCC-BCSSCSSHHHHHHHHHHHH---TCCCCCCC----SCTTTTS
T ss_pred CCCceEEE-ECCCCCcHHHHHHHHHHHh---CCCEEEec----hHHHHHh
Confidence 34566888 7999999999999998753 56999999 8776543
No 132
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.66 E-value=0.011 Score=62.77 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
..+.+||| +|++||||+++|++|+... +.+|+.++ |..+..
T Consensus 115 ~~~~~vLl-~GppGtGKT~la~aia~~~---~~~~~~i~----~~~l~~ 155 (357)
T 3d8b_A 115 GPPKGILL-FGPPGTGKTLIGKCIASQS---GATFFSIS----ASSLTS 155 (357)
T ss_dssp SCCSEEEE-ESSTTSSHHHHHHHHHHHT---TCEEEEEE----GGGGCC
T ss_pred CCCceEEE-ECCCCCCHHHHHHHHHHHc---CCeEEEEe----hHHhhc
Confidence 45667888 7999999999999999765 56999999 876544
No 133
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.29 E-value=0.021 Score=36.59 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhcccC.....
Q 005631 629 FADREAAVTKYRQKKTERC..... 647 (687)
Q Consensus 629 ~~~r~~~~~r~~~kr~~r~..... 647 (687)
+..|.+.|.||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4579999999999999984
No 134
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.21 E-value=0.0099 Score=63.63 Aligned_cols=41 Identities=5% Similarity=-0.003 Sum_probs=32.0
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
.+.+||| .|++||||+++|++|. .+.+.+||.|+ |..+...
T Consensus 147 ~~~~vLL-~GppGtGKT~la~aia---~~~~~~~~~v~----~~~l~~~ 187 (389)
T 3vfd_A 147 PARGLLL-FGPPGNGKTMLAKAVA---AESNATFFNIS----AASLTSK 187 (389)
T ss_dssp CCSEEEE-ESSTTSCHHHHHHHHH---HHTTCEEEEEC----SCCC---
T ss_pred CCceEEE-ECCCCCCHHHHHHHHH---HhhcCcEEEee----HHHhhcc
Confidence 4567888 7999999999999995 44667999999 8776654
No 135
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.17 E-value=0.25 Score=50.93 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=73.8
Q ss_pred HHHHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-----CCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 9 LLLCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 9 l~~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-----mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
....|...||.++ .++.+...|.++.. ..+++| +.+ .|- ...+++++.|++. ..+|||+=.+-.++
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~---~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI~TP 199 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE---IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTA 199 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH---SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH---hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCCCCH
Confidence 4455677899976 58888888877654 478877 555 542 2347899999986 68999998888999
Q ss_pred HHHHHHHhCCCCEEEeCC-----CCHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKP-----IRKNELKNLWQHVWR 114 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP-----~~~eeL~~~L~~alr 114 (687)
+.+.+||++||+..++=- -++.++...+..+++
T Consensus 200 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 200 SDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999998643 346666666655554
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.76 E-value=0.018 Score=57.46 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=32.7
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
.+.+|++ .|++||||+++|++|+... ..|||.++ |..+.+
T Consensus 44 ~~~~vll-~G~~GtGKT~la~~la~~~---~~~~~~i~----~~~~~~ 83 (257)
T 1lv7_A 44 IPKGVLM-VGPPGTGKTLLAKAIAGEA---KVPFFTIS----GSDFVE 83 (257)
T ss_dssp CCCEEEE-ECCTTSCHHHHHHHHHHHH---TCCEEEEC----SCSSTT
T ss_pred CCCeEEE-ECcCCCCHHHHHHHHHHHc---CCCEEEEe----HHHHHH
Confidence 3556888 7999999999999999754 45899999 877654
No 137
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.69 E-value=0.023 Score=57.56 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=34.0
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
.+.+||+ .|++||||.++|++|+... +.+|+.++ |..+.+
T Consensus 49 ~~~~vll-~G~~GtGKT~la~~la~~l---~~~~~~i~----~~~~~~ 88 (310)
T 1ofh_A 49 TPKNILM-IGPTGVGKTEIARRLAKLA---NAPFIKVE----ATKFTE 88 (310)
T ss_dssp CCCCEEE-ECCTTSSHHHHHHHHHHHH---TCCEEEEE----GGGGSS
T ss_pred CCceEEE-ECCCCCCHHHHHHHHHHHh---CCCEEEEc----chhccc
Confidence 4567888 7999999999999999876 45899999 988764
No 138
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.60 E-value=0.023 Score=58.88 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=40.6
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFA 237 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESe 237 (687)
...+++| +|++||||.++|++|+....+.+.+|+.++ |..+...+.+..
T Consensus 36 ~~~~lll-~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~~~~~~~~~~~~ 84 (324)
T 1l8q_A 36 LYNPIFI-YGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----ADDFAQAMVEHL 84 (324)
T ss_dssp SCSSEEE-ECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----HHHHHHHHHHHH
T ss_pred CCCeEEE-ECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----HHHHHHHHHHHH
Confidence 3456888 799999999999999988776688999999 988877666544
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.51 E-value=0.025 Score=56.01 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=32.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..+.+||+ +|++||||.++|++|+.. .+.+|+.++ |..+.
T Consensus 37 ~~~~~vll-~G~~GtGKT~la~~la~~---~~~~~~~~~----~~~~~ 76 (262)
T 2qz4_A 37 KVPKGALL-LGPPGCGKTLLAKAVATE---AQVPFLAMA----GAEFV 76 (262)
T ss_dssp CCCCEEEE-ESCTTSSHHHHHHHHHHH---HTCCEEEEE----TTTTS
T ss_pred CCCceEEE-ECCCCCCHHHHHHHHHHH---hCCCEEEec----hHHHH
Confidence 34556888 799999999999999974 456999999 87653
No 140
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.49 E-value=0.025 Score=57.59 Aligned_cols=39 Identities=3% Similarity=-0.002 Sum_probs=32.1
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
.+..||+ .|++||||+++|++|+... ..+|+.++ |..+.
T Consensus 53 ~~~~vll-~Gp~GtGKT~la~~la~~~---~~~~~~i~----~~~l~ 91 (297)
T 3b9p_A 53 PAKGLLL-FGPPGNGKTLLARAVATEC---SATFLNIS----AASLT 91 (297)
T ss_dssp CCSEEEE-ESSSSSCHHHHHHHHHHHT---TCEEEEEE----STTTS
T ss_pred CCCeEEE-ECcCCCCHHHHHHHHHHHh---CCCeEEee----HHHHh
Confidence 3556888 7999999999999999876 46899999 86543
No 141
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.84 E-value=0.024 Score=63.89 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=29.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCcc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDL 243 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l 243 (687)
.+++ .|++||||+++||+||.... .+|+.|+ |..+++ ++++|||.-
T Consensus 110 ~vll-~Gp~GtGKTtlar~ia~~l~---~~~~~i~----~~~~~~---~~~~~g~~~ 155 (543)
T 3m6a_A 110 ILCL-AGPPGVGKTSLAKSIAKSLG---RKFVRIS----LGGVRD---ESEIRGHRR 155 (543)
T ss_dssp EEEE-ESSSSSSHHHHHHHHHHHHT---CEEEEEC----CCC---------------
T ss_pred EEEE-ECCCCCCHHHHHHHHHHhcC---CCeEEEE----ecccch---hhhhhhHHH
Confidence 3666 79999999999999998874 4899999 988765 678888754
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.77 E-value=0.054 Score=52.22 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=37.2
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERC 233 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L 233 (687)
....+|+| .|++||||.++|++|+....+.+.+++.++ |..+.+.+
T Consensus 50 ~~~~~~ll-~G~~G~GKT~la~~l~~~~~~~~~~~~~~~----~~~~~~~~ 95 (242)
T 3bos_A 50 DGVQAIYL-WGPVKSGRTHLIHAACARANELERRSFYIP----LGIHASIS 95 (242)
T ss_dssp CSCSEEEE-ECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----GGGGGGSC
T ss_pred CCCCeEEE-ECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----HHHHHHHH
Confidence 34566888 899999999999999988777778888888 77665543
No 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.72 E-value=0.034 Score=62.34 Aligned_cols=49 Identities=6% Similarity=-0.248 Sum_probs=39.2
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhh-hhhhhhhhhccCC
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQD-HEERCENFAKRSR 241 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~a-ipe~L~ESelFGh 241 (687)
+.+..+||+ .|++||||.++|++||....+ ..+|+.++ |.- .| ++|||.
T Consensus 38 l~~~~~VLL-~GpPGtGKT~LAraLa~~l~~-~~~f~~~~----~~~~t~-----~dL~G~ 87 (500)
T 3nbx_X 38 ALSGESVFL-LGPPGIAKSLIARRLKFAFQN-ARAFEYLM----TRFSTP-----EEVFGP 87 (500)
T ss_dssp HHHTCEEEE-ECCSSSSHHHHHHHGGGGBSS-CCEEEEEC----CTTCCH-----HHHHCC
T ss_pred HhcCCeeEe-ecCchHHHHHHHHHHHHHHhh-hhHHHHHH----HhcCCH-----HHhcCc
Confidence 466779999 799999999999999998854 56899888 764 33 567775
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.68 E-value=0.059 Score=54.89 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=32.7
Q ss_pred CccccCCCCCCCChhHHHH----HhhhcCcccCCCceecCChhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQ----VIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~Ar----aIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
.+||+ +|++||||.++|+ .+|..+.+...+|+.++ |..+-
T Consensus 68 ~~vll-~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~----~~~l~ 111 (309)
T 3syl_A 68 LHMSF-TGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT----RDDLV 111 (309)
T ss_dssp CEEEE-EECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC----GGGTC
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc----HHHhh
Confidence 35788 8999999999995 67777777788999999 77653
No 145
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=92.24 E-value=0.036 Score=35.99 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhcccCCCC
Q 005631 632 REAAVTKYRQKKTERCFRK 650 (687)
Q Consensus 632 r~~~~~r~~~kr~~r~~~k 650 (687)
|.+.|.||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999997665
No 146
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=92.21 E-value=2.2 Score=40.38 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-md-GleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++.. ..+.++.++.+.+ ..||+|.+-. +.. +. -.++++.|++.. .++++|++ -+..-
T Consensus 35 ~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~~~g-~~~i~v~v-GG~~~ 110 (161)
T 2yxb_A 35 AKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLRELG-ADDIPVVL-GGTIP 110 (161)
T ss_dssp HHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHHHTT-CTTSCEEE-EECCC
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHHhcC-CCCCEEEE-eCCCc
Confidence 356778899999996533 4578889999988 8999999987 653 22 234667777652 24676554 45544
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
......+.+.|++.++..--+..+....+..++...
T Consensus 111 ~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 111 IPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 445555668999876665556667777777776554
No 147
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.76 E-value=0.064 Score=59.76 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=34.2
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
.+.+||+ .|++||||.++|++|+.. .+.||+.++ |..+.+.
T Consensus 48 ~p~gvLL-~GppGtGKT~Laraia~~---~~~~f~~is----~~~~~~~ 88 (476)
T 2ce7_A 48 MPKGILL-VGPPGTGKTLLARAVAGE---ANVPFFHIS----GSDFVEL 88 (476)
T ss_dssp CCSEEEE-ECCTTSSHHHHHHHHHHH---HTCCEEEEE----GGGTTTC
T ss_pred CCCeEEE-ECCCCCCHHHHHHHHHHH---cCCCeeeCC----HHHHHHH
Confidence 4566888 799999999999999974 467999999 8877654
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.49 E-value=0.068 Score=55.61 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=31.8
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
+..||+ +|++||||.++|++|+.. .+.+|+.|+ |..+-.
T Consensus 51 ~~~vLl-~GppGtGKT~la~aia~~---~~~~~~~v~----~~~l~~ 89 (322)
T 3eie_A 51 TSGILL-YGPPGTGKSYLAKAVATE---ANSTFFSVS----SSDLVS 89 (322)
T ss_dssp CCEEEE-ECSSSSCHHHHHHHHHHH---HTCEEEEEE----HHHHHT
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHH---HCCCEEEEc----hHHHhh
Confidence 345888 899999999999999865 467999999 876543
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.45 E-value=0.067 Score=58.94 Aligned_cols=34 Identities=18% Similarity=0.013 Sum_probs=28.4
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
...+|++ .|++||||+++|++||....+ +|+.++
T Consensus 49 ~~~~vLL-~GppGtGKTtlAr~ia~~~~~---~f~~l~ 82 (447)
T 3pvs_A 49 HLHSMIL-WGPPGTGKTTLAEVIARYANA---DVERIS 82 (447)
T ss_dssp CCCEEEE-ECSTTSSHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCcEEEE-ECCCCCcHHHHHHHHHHHhCC---CeEEEE
Confidence 3345777 799999999999999988754 788888
No 150
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.31 E-value=0.048 Score=62.26 Aligned_cols=50 Identities=12% Similarity=-0.130 Sum_probs=36.7
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCcee-cCChhhhhhhhhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVP-VTAAKECQDHEERCENFA 237 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~-vn~~~~C~aipe~L~ESe 237 (687)
+.+.+||+ .|++||||+++|++||..++|..-++.. ++ |..+...++...
T Consensus 325 r~~~~vLL-~GppGtGKT~LAr~la~~~~r~~~~~~~~~~----~~~l~~~~~~~~ 375 (595)
T 3f9v_A 325 RGDIHILI-IGDPGTAKSQMLQFISRVAPRAVYTTGKGST----AAGLTAAVVREK 375 (595)
T ss_dssp CCSCCEEE-EESSCCTHHHHHHSSSTTCSCEECCCTTCST----TTTSEEECSSGG
T ss_pred CCCcceEE-ECCCchHHHHHHHHHHHhCCCceecCCCccc----cccccceeeecc
Confidence 34558999 7999999999999999999887444322 34 677666655543
No 151
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.17 E-value=0.061 Score=59.32 Aligned_cols=38 Identities=5% Similarity=-0.069 Sum_probs=30.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcc-------cCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEI-------TGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R-------~~~pFV~vn 221 (687)
....++|+ .|++||||+++|++||....+ .+.+|+.++
T Consensus 199 ~~~~~~LL-~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 199 RTKNNPVL-IGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSSCEEEE-ESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCeEE-ECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 56667888 799999999999999988644 466788888
No 152
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.95 E-value=0.13 Score=60.86 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=45.8
Q ss_pred cccCCCCCCCcccccchhhhhh-----------hcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhh
Q 005631 159 VNGGDGSDDGSGTQSSWTKKAV-----------EVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQ 227 (687)
Q Consensus 159 ~~~~D~sG~G~~aqS~~~k~~~-----------ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ 227 (687)
+...|+.|....++........ .+..+..||| .|++||||+++|++|.... ..+||.|+ |.
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL-~Gp~GtGKTtLarala~~l---~~~~i~v~----~~ 272 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL-YGPPGTGKTLIARAVANET---GAFFFLIN----GP 272 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEE-CSCTTSSHHHHHHHHHHTT---TCEEEEEE----HH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEE-ECcCCCCHHHHHHHHHHHc---CCcEEEEE----ch
Confidence 4456788877776544333222 2355666888 7999999999999997654 45899999 76
Q ss_pred hhhh
Q 005631 228 DHEE 231 (687)
Q Consensus 228 aipe 231 (687)
.+..
T Consensus 273 ~l~~ 276 (806)
T 1ypw_A 273 EIMS 276 (806)
T ss_dssp HHSS
T ss_pred Hhhh
Confidence 6543
No 153
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.84 E-value=0.071 Score=49.14 Aligned_cols=42 Identities=5% Similarity=-0.070 Sum_probs=32.2
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcc-------cCCCceecCChhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEI-------TGSRRVPVTAAKECQDH 229 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R-------~~~pFV~vn~~~~C~ai 229 (687)
....+|+| +|++||||.++|++|+....+ .+.+++.++ |..+
T Consensus 41 ~~~~~vll-~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 89 (187)
T 2p65_A 41 RTKNNPIL-LGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD----LSSL 89 (187)
T ss_dssp SSSCEEEE-ESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC----HHHH
T ss_pred CCCCceEE-ECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe----HHHh
Confidence 34556888 899999999999999987654 356777777 6654
No 154
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.75 E-value=0.061 Score=55.87 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=34.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCccc------CCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEIT------GSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~------~~pFV~vn~~~~C~aip 230 (687)
....+|+| +|++||||.++|++|+....+. ..+||.+| |....
T Consensus 42 ~~~~~vll-~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~ 90 (387)
T 2v1u_A 42 EKPSNALL-YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRE 90 (387)
T ss_dssp CCCCCEEE-CBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSC
T ss_pred CCCCcEEE-ECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCC
Confidence 45556888 8999999999999999876544 67899999 87644
No 155
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.65 E-value=0.079 Score=48.65 Aligned_cols=42 Identities=5% Similarity=-0.062 Sum_probs=32.1
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcc-------cCCCceecCChhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEI-------TGSRRVPVTAAKECQDH 229 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R-------~~~pFV~vn~~~~C~ai 229 (687)
....+|+| +|++||||.++|++|+..-.+ ...+++.++ |..+
T Consensus 41 ~~~~~~ll-~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 89 (195)
T 1jbk_A 41 RTKNNPVL-IGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD----MGAL 89 (195)
T ss_dssp SSSCEEEE-ECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC----HHHH
T ss_pred CCCCceEE-ECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee----HHHH
Confidence 34556888 799999999999999876443 356788888 7654
No 156
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.55 E-value=0.079 Score=56.18 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=32.2
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
+..||+ +|++||||.++|++|+... ..+|+.|+ |..+..
T Consensus 84 ~~~iLL-~GppGtGKT~la~ala~~~---~~~~~~v~----~~~l~~ 122 (355)
T 2qp9_X 84 TSGILL-YGPPGTGKSYLAKAVATEA---NSTFFSVS----SSDLVS 122 (355)
T ss_dssp CCCEEE-ECSTTSCHHHHHHHHHHHH---TCEEEEEE----HHHHHS
T ss_pred CceEEE-ECCCCCcHHHHHHHHHHHh---CCCEEEee----HHHHhh
Confidence 345888 7999999999999999865 56999999 876543
No 157
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.51 E-value=0.078 Score=55.38 Aligned_cols=38 Identities=5% Similarity=-0.043 Sum_probs=31.7
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ai 229 (687)
.+||+ +|++||||.++|++|+.... +..||+.++ |..+
T Consensus 71 ~~vLl-~GppGtGKT~la~~la~~l~-~~~~~~~~~----~~~~ 108 (368)
T 3uk6_A 71 RAVLI-AGQPGTGKTAIAMGMAQALG-PDTPFTAIA----GSEI 108 (368)
T ss_dssp CEEEE-EESTTSSHHHHHHHHHHHHC-SSCCEEEEE----GGGG
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHhc-ccCCccccc----chhh
Confidence 46888 89999999999999998775 456999998 7653
No 158
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=90.45 E-value=0.62 Score=48.09 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-----HHHHHHHHhhcCCCC-ceEEEEecCCCh
Q 005631 10 LLCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHKTRKN-LPVIMMSSLDSM 81 (687)
Q Consensus 10 ~~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-----leLL~~Ir~~~~~p~-iPVIvmTa~~d~ 81 (687)
...|...||.++ .+..|...|.++.. ..+++| +.+ .|-.+| .++++.|++. .++ +|||+=.+-.+.
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~---~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~--~~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAA---LGTATV-MPLAAPIGSGWGVRTRALLELFARE--KASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHH---HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT--TTTSSCBEEESCCCSH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHh---cCCCEE-EecCccCcCCcccCCHHHHHHHHHh--cCCCCeEEEeCCCCCH
Confidence 344566799865 46678766655544 467766 666 543333 5678999873 257 999998888999
Q ss_pred HHHHHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 114 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr 114 (687)
+.+..+|++||+..|+ |--++..+...+..+++
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999886 43346666666665554
No 159
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.14 E-value=0.078 Score=53.39 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..+.+||| .|++||||.++|++|... .+.+|+.++ |..+.
T Consensus 49 ~~~~~~ll-~G~~GtGKT~la~~la~~---~~~~~~~v~----~~~~~ 88 (285)
T 3h4m_A 49 EPPKGILL-YGPPGTGKTLLAKAVATE---TNATFIRVV----GSELV 88 (285)
T ss_dssp CCCSEEEE-ESSSSSSHHHHHHHHHHH---TTCEEEEEE----GGGGC
T ss_pred CCCCeEEE-ECCCCCcHHHHHHHHHHH---hCCCEEEEe----hHHHH
Confidence 45566888 799999999999999654 456899998 76553
No 160
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.63 E-value=0.14 Score=57.24 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
+..|+| .|++||||.++|++|+.... .+||.++ |..+.+
T Consensus 64 p~GvLL-~GppGtGKTtLaraIa~~~~---~~~i~i~----g~~~~~ 102 (499)
T 2dhr_A 64 PKGVLL-VGPPGVGKTHLARAVAGEAR---VPFITAS----GSDFVE 102 (499)
T ss_dssp CSEEEE-ECSSSSSHHHHHHHHHHHTT---CCEEEEE----GGGGTS
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHhC---CCEEEEe----hhHHHH
Confidence 445888 79999999999999998764 6999999 877654
No 161
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=89.32 E-value=4.9 Score=36.78 Aligned_cols=103 Identities=10% Similarity=-0.093 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCceEEEEecCC-
Q 005631 6 AMLLLLCFEIAVMKVI--TEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMMSSLD- 79 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V--~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-md-GleLL~~Ir~~~~~p~iPVIvmTa~~- 79 (687)
..++..+|+..||+++ ....+.++.++.+.+ ..+|+|.+-. +.. +. -.++++.|++.. .++++|+ +-+..
T Consensus 20 ~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g-~~~i~v~-vGG~~~ 95 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEAG-LEGILLY-VGGNIV 95 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHTT-CTTCEEE-EEESCS
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhcC-CCCCEEE-EECCCc
Confidence 3567789999999965 246788999999988 8999999988 643 11 224677777653 2356664 44532
Q ss_pred ----ChH-HHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 80 ----SMG-LVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 80 ----d~~-~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
+.. ....+.+.|++.|+.---+..++...|...
T Consensus 96 ~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 96 VGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp SSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 222 244577899988876656777776666543
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.25 E-value=0.11 Score=54.33 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=28.0
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..||+ +|++||||.++|++|+.... ..+|+.|+
T Consensus 46 ~~iLL-~GppGtGKT~la~ala~~~~--~~~~~~i~ 78 (322)
T 1xwi_A 46 RGILL-FGPPGTGKSYLAKAVATEAN--NSTFFSIS 78 (322)
T ss_dssp SEEEE-ESSSSSCHHHHHHHHHHHTT--SCEEEEEE
T ss_pred ceEEE-ECCCCccHHHHHHHHHHHcC--CCcEEEEE
Confidence 45888 79999999999999998762 45899999
No 163
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.09 E-value=0.13 Score=56.28 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=30.3
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ai 229 (687)
+..||+ .|++||||.++|++|+.... ..+|+.|+ |..+
T Consensus 167 ~~~vLL-~GppGtGKT~lA~aia~~~~--~~~~~~v~----~~~l 204 (444)
T 2zan_A 167 WRGILL-FGPPGTGKSYLAKAVATEAN--NSTFFSIS----SSDL 204 (444)
T ss_dssp CSEEEE-ECSTTSSHHHHHHHHHHHCC--SSEEEEEC----CC--
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHcC--CCCEEEEe----HHHH
Confidence 355888 79999999999999998762 45899999 7654
No 164
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.84 E-value=0.12 Score=53.27 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=31.8
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
+..+|+ .|++||||.++|++|.... +.+||.++ |+.+-.
T Consensus 36 p~~lLl-~GppGtGKT~la~aiA~~l---~~~~i~v~----~~~l~~ 74 (293)
T 3t15_A 36 PLILGI-WGGKGQGKSFQCELVFRKM---GINPIMMS----AGELES 74 (293)
T ss_dssp CSEEEE-EECTTSCHHHHHHHHHHHH---TCCCEEEE----HHHHHC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHh---CCCEEEEe----HHHhhh
Confidence 344777 7999999999999998765 56999999 887643
No 165
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=88.31 E-value=2.2 Score=42.75 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=64.3
Q ss_pred HHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--C-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 8 LLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--M-----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 8 ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--M-----P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
+++.+ +..|..++..+.+.+++.+... ..+|+|.+-+ + +...+++++++|++. .+|||.-.+-.+
T Consensus 121 ~i~~~-~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~GGI~t 192 (229)
T 3q58_A 121 LLTRI-RLHGLLAMADCSTVNEGISCHQ---KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAEGRYNT 192 (229)
T ss_dssp HHHHH-HHTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEESSCCS
T ss_pred HHHHH-HHCCCEEEEecCCHHHHHHHHh---CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEECCCCC
Confidence 33333 4458887888999999987765 4799886432 2 334578999998753 799999999999
Q ss_pred hHHHHHHHhCCCCEEEeC
Q 005631 81 MGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~K 98 (687)
.+.+.+++..||+.+++=
T Consensus 193 ~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 193 PALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999874
No 166
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.54 E-value=0.13 Score=53.64 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=33.8
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCccc--------CCCceecCChhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEIT--------GSRRVPVTAAKECQDHE 230 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~--------~~pFV~vn~~~~C~aip 230 (687)
.+..|+| +|++||||.++|++|+....+. +.+||.++ |...+
T Consensus 44 ~~~~vll-~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~ 93 (384)
T 2qby_B 44 VKFSNLF-LGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVG 93 (384)
T ss_dssp CCCEEEE-EECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHC
T ss_pred CCCcEEE-ECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCC
Confidence 3445888 8999999999999999875444 67899999 88754
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.94 E-value=0.22 Score=56.67 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=33.9
Q ss_pred hhhcCCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 179 AVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 179 ~~ea~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
...+....+|+| .|++||||+++|++||...++....++.+.
T Consensus 54 ~~~i~~g~~vll-~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 54 KTAANQKRHVLL-IGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp HHHHHTTCCEEE-ECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred cccccCCCEEEE-EeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 333567778888 799999999999999999988775566554
No 168
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=86.70 E-value=3.1 Score=41.65 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--C-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 8 LLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--M-----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 8 ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--M-----P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
++..+ +..|..++..+.+.+++.+... ..+|+|.+-+ + +...+++++++|+.. .+|||...+-.+
T Consensus 121 ~i~~~-~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~GGI~t 192 (232)
T 3igs_A 121 LLARI-HHHHLLTMADCSSVDDGLACQR---LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAEGRYNS 192 (232)
T ss_dssp HHHHH-HHTTCEEEEECCSHHHHHHHHH---TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEESCCCS
T ss_pred HHHHH-HHCCCEEEEeCCCHHHHHHHHh---CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEECCCCC
Confidence 33333 4558887788899999987765 4699886432 2 234578999998763 799999999889
Q ss_pred hHHHHHHHhCCCCEEEeC
Q 005631 81 MGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~K 98 (687)
.+.+.+++..||+.+++=
T Consensus 193 ~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 193 PALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999874
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.26 E-value=0.24 Score=54.12 Aligned_cols=47 Identities=9% Similarity=-0.125 Sum_probs=37.1
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCccc--CCCceecCChhhhhhhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEIT--GSRRVPVTAAKECQDHEERCENF 236 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~--~~pFV~vn~~~~C~aipe~L~ES 236 (687)
..+++| .|++||||.++|++|+....+. +.+|+.++ |..+...+.+.
T Consensus 130 ~~~lll-~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~~~~~~~~~~~ 178 (440)
T 2z4s_A 130 YNPLFI-YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----SEKFLNDLVDS 178 (440)
T ss_dssp SCCEEE-ECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----HHHHHHHHHHH
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----HHHHHHHHHHH
Confidence 346888 7999999999999998766544 67889999 88776665553
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.21 E-value=0.27 Score=49.64 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=31.1
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
..|+| .|++||||+++|++|+.... .+||.++ |..+.+
T Consensus 74 ~gvll-~Gp~GtGKTtl~~~i~~~~~---~~~i~~~----~~~~~~ 111 (278)
T 1iy2_A 74 KGVLL-VGPPGVGKTHLARAVAGEAR---VPFITAS----GSDFVE 111 (278)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHHTT---CCEEEEE----HHHHHH
T ss_pred CeEEE-ECCCcChHHHHHHHHHHHcC---CCEEEec----HHHHHH
Confidence 34777 79999999999999998764 6899998 766543
No 171
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=85.88 E-value=8.5 Score=36.82 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
.+......+.+..++.+... ..+|.|+++. .|. ..+++.++++++. ..+||++.-+-. .+.+.++
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~pvia~GGI~-~~nv~~~ 179 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---VKIPVVAIGGIN-KDNAREV 179 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH---CSSCEEEESSCC-TTTHHHH
T ss_pred CCCEEEEecCCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh---CCCCEEEECCcC-HHHHHHH
Confidence 35544445788888776544 3699999987 664 3578999998876 378988877766 7888889
Q ss_pred HhCCCCEEEe
Q 005631 88 LSKGAVDFLV 97 (687)
Q Consensus 88 m~aGA~DYL~ 97 (687)
++.||+.+.+
T Consensus 180 ~~~Ga~gv~v 189 (215)
T 1xi3_A 180 LKTGVDGIAV 189 (215)
T ss_dssp HTTTCSEEEE
T ss_pred HHcCCCEEEE
Confidence 9999998854
No 172
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=85.60 E-value=2.4 Score=43.12 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCHHHHHHH---HHhhCCCccEEEEcc-CC--CCCH--------------------HHHHHHHHhhcCCCCceEEEEecC
Q 005631 25 TNGLQAWKI---LEDLTNHIDLVLTEV-MP--CLSG--------------------VALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 25 ~sg~eALe~---L~~~~~~pDLVLlDl-MP--~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
.+.++.++. |.+ ...|+|.+++ .. -.|| +++++.||+. .|.+||++|+-+
T Consensus 28 p~~~~~~~~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pi~~m~y~ 103 (262)
T 2ekc_A 28 PDYETSLKAFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE--FPDIPFLLMTYY 103 (262)
T ss_dssp SCHHHHHHHHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEECCH
T ss_pred CChHHHHHHHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCEEEEecC
Confidence 344444444 444 5699999998 53 2333 4567788766 358999999654
Q ss_pred CC------hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHH
Q 005631 79 DS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 79 ~d------~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
.. ...+..|..+|++.+|+-.+..+++...+..
T Consensus 104 n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~ 142 (262)
T 2ekc_A 104 NPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAV 142 (262)
T ss_dssp HHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred cHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 32 3456778899999999977888776655543
No 173
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.47 E-value=0.25 Score=51.43 Aligned_cols=45 Identities=4% Similarity=-0.093 Sum_probs=36.3
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCc-ccCCCceecCChhhhhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAE-ITGSRRVPVTAAKECQDHEERCE 234 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~-R~~~pFV~vn~~~~C~aipe~L~ 234 (687)
..+|++ .|++||||..+|++|+.... +.+.+++.++ |..+-..|.
T Consensus 152 ~~~lll-~G~~GtGKT~La~aia~~~~~~~g~~v~~~~----~~~l~~~l~ 197 (308)
T 2qgz_A 152 QKGLYL-YGDMGIGKSYLLAAMAHELSEKKGVSTTLLH----FPSFAIDVK 197 (308)
T ss_dssp CCEEEE-ECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE----HHHHHHHHH
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE----HHHHHHHHH
Confidence 456888 79999999999999999887 7788888888 766555443
No 174
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=85.32 E-value=12 Score=36.26 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
+..+...+.+.+++.+... ...|.|+++. .+. .-|+++++.+++. ..+|||+.-+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHH
Confidence 5555556788888877665 4699999976 543 2368888888765 37899988777 889999999
Q ss_pred hCCCCEEEe
Q 005631 89 SKGAVDFLV 97 (687)
Q Consensus 89 ~aGA~DYL~ 97 (687)
+.||+.+.+
T Consensus 183 ~~Ga~gv~v 191 (221)
T 1yad_A 183 QAGADGIAV 191 (221)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998765
No 175
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.06 E-value=0.33 Score=48.14 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=30.0
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..|++ .|++||||.++|++|+.... .+||.++ |..+.
T Consensus 50 ~g~ll-~G~~G~GKTtl~~~i~~~~~---~~~i~~~----~~~~~ 86 (254)
T 1ixz_A 50 KGVLL-VGPPGVGKTHLARAVAGEAR---VPFITAS----GSDFV 86 (254)
T ss_dssp SEEEE-ECCTTSSHHHHHHHHHHHTT---CCEEEEE----HHHHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHhC---CCEEEee----HHHHH
Confidence 34777 79999999999999987664 6899998 76554
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.86 E-value=0.38 Score=50.04 Aligned_cols=39 Identities=5% Similarity=-0.175 Sum_probs=32.5
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCccc-CCCceecCChhhhhhhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEIT-GSRRVPVTAAKECQDHE 230 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~-~~pFV~vn~~~~C~aip 230 (687)
.|+| +|++||||.++|++|+....+. .-+|+.++ |....
T Consensus 46 ~~li-~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~ 85 (389)
T 1fnn_A 46 RATL-LGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYR 85 (389)
T ss_dssp EEEE-ECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCC
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCC
Confidence 5777 8999999999999999877666 57899999 76654
No 177
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.85 E-value=0.21 Score=51.59 Aligned_cols=34 Identities=3% Similarity=0.032 Sum_probs=28.7
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
...+||+ .|++||||.++|++|+... +.+|+.++
T Consensus 45 ~~~~vll-~G~pGtGKT~la~~la~~~---~~~~~~i~ 78 (331)
T 2r44_A 45 TGGHILL-EGVPGLAKTLSVNTLAKTM---DLDFHRIQ 78 (331)
T ss_dssp HTCCEEE-ESCCCHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCCeEEE-ECCCCCcHHHHHHHHHHHh---CCCeEEEe
Confidence 3567888 7999999999999998765 45888888
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.66 E-value=0.4 Score=44.93 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=27.2
Q ss_pred CccccCCCCCCCChhHHHHHhhhc--CcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSN--AEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~--S~R~~~pFV~vn 221 (687)
.+|+| +|++||||.++|++|+.. ......+|+.++
T Consensus 39 ~~~ll-~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 39 PHLLF-SGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp CCEEE-ECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 34777 899999999999999864 333445788887
No 179
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.50 E-value=0.38 Score=56.04 Aligned_cols=38 Identities=5% Similarity=-0.063 Sum_probs=29.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCccc-------CCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEIT-------GSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~-------~~pFV~vn 221 (687)
....+||+ .|++||||+++|++||....+. +.+|+.++
T Consensus 199 ~~~~~vLL-~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 199 RTKNNPVL-IGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSSCEEEE-ESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCeEE-ECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 56677888 7999999999999999886553 44566665
No 180
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.11 E-value=0.32 Score=50.21 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCccc---CCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEIT---GSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~---~~pFV~vn~~~~C~aip 230 (687)
.....|+| +|++||||.++|++|+....+. +.+||.++ |...+
T Consensus 43 ~~~~~vli-~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~ 88 (386)
T 2qby_A 43 EKPNNIFI-YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQID 88 (386)
T ss_dssp CCCCCEEE-EECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHC
T ss_pred CCCCeEEE-ECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCC
Confidence 34455777 8999999999999998766554 56899999 87654
No 181
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=82.86 E-value=2.1 Score=44.04 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=56.3
Q ss_pred HHHHHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCCC----
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS---- 80 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~d---- 80 (687)
.+.++.|.+ ...|+|=+++ . |-+|| +++++.||+. ...+|||+|+-+..
T Consensus 35 ~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~--~~~~Pivlm~Y~npv~~~ 110 (267)
T 3vnd_A 35 LKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQ--HPDMPIGLLLYANLVFAN 110 (267)
T ss_dssp HHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCCEEEEECHHHHHHH
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEEEecCcHHHHh
Confidence 334455555 6799999997 3 55655 5666777754 36899999976442
Q ss_pred --hHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 81 --MGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 81 --~~~av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
...+.+|.++|++..|+-.+.++|....+.
T Consensus 111 g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~ 142 (267)
T 3vnd_A 111 GIDEFYTKAQAAGVDSVLIADVPVEESAPFSK 142 (267)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHH
Confidence 556888889999999997788887655444
No 182
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=81.55 E-value=3.8 Score=40.63 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=51.3
Q ss_pred HHHHHHhhCCCccEEEEcc---CCCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCCC------
Q 005631 30 AWKILEDLTNHIDLVLTEV---MPCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS------ 80 (687)
Q Consensus 30 ALe~L~~~~~~pDLVLlDl---MP~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~d------ 80 (687)
.++.+.+ . .|.|-+++ -|.+|| +++++.|++. .++||++|+....
T Consensus 24 ~a~~~~~--~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~ 97 (248)
T 1geq_A 24 FLLALDE--Y-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH---SSTPIVLMTYYNPIYRAGV 97 (248)
T ss_dssp HHHHHGG--G-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT---CCCCEEEEECHHHHHHHCH
T ss_pred HHHHHHH--c-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh---CCCCEEEEeccchhhhcCH
Confidence 3344455 5 89998885 356765 6677888765 4689999985433
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNL 108 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~ 108 (687)
.+.+..++..||+.++.=.+..+++...
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~ 125 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEF 125 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHH
Confidence 5788889999999999865666555433
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=81.44 E-value=0.53 Score=48.28 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=29.4
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEER 232 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~ 232 (687)
..+|+ .|++||||..+|++|...- +.+|+.+| |......
T Consensus 49 ~~~L~-~G~~G~GKT~la~~la~~l---~~~~~~i~----~~~~~~~ 87 (324)
T 3u61_B 49 HIILH-SPSPGTGKTTVAKALCHDV---NADMMFVN----GSDCKID 87 (324)
T ss_dssp SEEEE-CSSTTSSHHHHHHHHHHHT---TEEEEEEE----TTTCCHH
T ss_pred eEEEe-eCcCCCCHHHHHHHHHHHh---CCCEEEEc----ccccCHH
Confidence 33555 8999999999999997544 46899998 6655433
No 184
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.92 E-value=0.55 Score=51.36 Aligned_cols=39 Identities=10% Similarity=-0.016 Sum_probs=31.9
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
..||+ .|++||||.++|++|.....+. -+|+.++ |..+.
T Consensus 64 ~~iLl-~GppGtGKT~la~ala~~l~~~-~~~~~~~----~~~~~ 102 (456)
T 2c9o_A 64 RAVLL-AGPPGTGKTALALAIAQELGSK-VPFCPMV----GSEVY 102 (456)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHHHCTT-SCEEEEE----GGGGC
T ss_pred CeEEE-ECCCcCCHHHHHHHHHHHhCCC-ceEEEEe----HHHHH
Confidence 45888 8999999999999999876542 6999999 76654
No 185
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.91 E-value=0.46 Score=55.11 Aligned_cols=27 Identities=4% Similarity=-0.169 Sum_probs=22.8
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S 210 (687)
....++++ +|++||||.++|++|+..-
T Consensus 205 ~~~~~vlL-~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLL-VGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEE-EcCCCCCHHHHHHHHHHHH
Confidence 56667888 7999999999999999643
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.83 E-value=0.62 Score=51.81 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=31.3
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEE 231 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe 231 (687)
.++|+ +|++||||.++|++|+... +.+|+.++ |..+..
T Consensus 78 ~~lLL-~GppGtGKTtla~~la~~l---~~~~i~in----~s~~~~ 115 (516)
T 1sxj_A 78 RAAML-YGPPGIGKTTAAHLVAQEL---GYDILEQN----ASDVRS 115 (516)
T ss_dssp SEEEE-ECSTTSSHHHHHHHHHHHT---TCEEEEEC----TTSCCC
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHc---CCCEEEEe----CCCcch
Confidence 35777 8999999999999999776 56899999 876543
No 187
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=79.76 E-value=3.7 Score=41.78 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=53.4
Q ss_pred HHHHHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecCC------Ch
Q 005631 31 WKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLD------SM 81 (687)
Q Consensus 31 Le~L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~~------d~ 81 (687)
++.|.+ ...|+|-+|+ . |-+|| +++++.||+. ...+||++|+-+. ..
T Consensus 37 ~~~l~~--~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pv~lm~y~n~v~~~g~~ 112 (268)
T 1qop_A 37 IDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREK--HPTIPIGLLMYANLVFNNGID 112 (268)
T ss_dssp HHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSSSCEEEEECHHHHHTTCHH
T ss_pred HHHHHH--CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEEEEcccHHHHhhHH
Confidence 344445 5699999999 5 33454 4567777765 3578999886332 24
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
..+..+.++||+.++.-.+..+++...+..
T Consensus 113 ~~~~~~~~aGadgii~~d~~~e~~~~~~~~ 142 (268)
T 1qop_A 113 AFYARCEQVGVDSVLVADVPVEESAPFRQA 142 (268)
T ss_dssp HHHHHHHHHTCCEEEETTCCGGGCHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence 677888899999999987887776555543
No 188
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=79.24 E-value=10 Score=39.61 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-C----CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHH
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-C----LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 86 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-~----mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~ 86 (687)
++..|..++..+.+.++|..... ..+|.|+++- -. + ...++++.++++. ..+|||+..+-.+.+.+.+
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~~---~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~dv~~ 193 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVER---AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRGMAA 193 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHHH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHH---cCCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH
Confidence 44567777777889888877655 4689888864 32 2 3568899998875 4799999999999999999
Q ss_pred HHhCCCCEEEe
Q 005631 87 CLSKGAVDFLV 97 (687)
Q Consensus 87 Am~aGA~DYL~ 97 (687)
++..||+.+.+
T Consensus 194 al~~GA~gV~v 204 (326)
T 3bo9_A 194 AFALGAEAVQM 204 (326)
T ss_dssp HHHHTCSEEEE
T ss_pred HHHhCCCEEEe
Confidence 99999998875
No 189
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=79.23 E-value=13 Score=38.14 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=61.3
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCC-CCHHHHHHHHHhhcCCC-CceEEEEecCCChHHHHHHH
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKTRK-NLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~-mdGleLL~~Ir~~~~~p-~iPVIvmTa~~d~~~av~Am 88 (687)
.+..|..++..+.+.+|+...+.. .+|+|-+.- +-. .-+++.+.+|... .+ .+|||...+-.+.+.+.+++
T Consensus 158 a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~--v~~~~pvVaegGI~t~edv~~l~ 232 (272)
T 3qja_A 158 TESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPG--LPSSVIRIAESGVRGTADLLAYA 232 (272)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGG--SCTTSEEEEESCCCSHHHHHHHH
T ss_pred HHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHh--CcccCEEEEECCCCCHHHHHHHH
Confidence 455799888889999998776654 588877653 211 1246677777755 23 79999999999999999999
Q ss_pred hCCCCEEEeC
Q 005631 89 SKGAVDFLVK 98 (687)
Q Consensus 89 ~aGA~DYL~K 98 (687)
+.||+.+|+=
T Consensus 233 ~~GadgvlVG 242 (272)
T 3qja_A 233 GAGADAVLVG 242 (272)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEEc
Confidence 9999999983
No 190
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.90 E-value=0.48 Score=47.78 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=27.0
Q ss_pred ccccCCCCCCCChhHHHHHhhhc--CcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSN--AEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~--S~R~~~pFV~vn 221 (687)
++++ +|+.||||.++|++|+.. .+....+|+.++
T Consensus 40 ~~ll-~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 40 HLLF-SGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp CEEE-ESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred eEEE-ECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 4777 899999999999999875 444445788888
No 191
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=78.85 E-value=15 Score=38.23 Aligned_cols=79 Identities=22% Similarity=0.207 Sum_probs=61.0
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
++..|..++..+.+.+++..... ..+|.|+++- -++ ...++++.++++. -.+|||+--+-.+.+.+
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~~~v 187 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAER---LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADGRGL 187 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSHHHH
T ss_pred HHHcCCCEEeeCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCHHHH
Confidence 34457777767889988887665 4689998865 332 2567888888865 47999998888889999
Q ss_pred HHHHhCCCCEEEe
Q 005631 85 FKCLSKGAVDFLV 97 (687)
Q Consensus 85 v~Am~aGA~DYL~ 97 (687)
.+++..||+...+
T Consensus 188 ~~al~~GAdgV~v 200 (328)
T 2gjl_A 188 VAALALGADAINM 200 (328)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999988775
No 192
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.46 E-value=0.7 Score=51.32 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDH 229 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~ai 229 (687)
.-+..||+ .|+.||||.++|+||=. ..+-+|+.|+ |..+
T Consensus 241 ~pprGILL-yGPPGTGKTlLAkAiA~---e~~~~fi~vs----~s~L 279 (467)
T 4b4t_H 241 DPPKGILL-YGPPGTGKTLCARAVAN---RTDATFIRVI----GSEL 279 (467)
T ss_dssp CCCSEEEE-CSCTTSSHHHHHHHHHH---HHTCEEEEEE----GGGG
T ss_pred CCCCceEe-eCCCCCcHHHHHHHHHh---ccCCCeEEEE----hHHh
Confidence 45566999 89999999999999943 4556899998 6554
No 193
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.75 E-value=0.97 Score=46.42 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.3
Q ss_pred ccccCCCCCCCChhHHHHHhhhcC---cccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNA---EITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S---~R~~~pFV~vn 221 (687)
.+++ +|++||||.++|++|+..- ......|+.++
T Consensus 60 ~~ll-~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 60 HMLF-YGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp CEEE-ECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 4777 8999999999999998763 23445677777
No 194
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=77.53 E-value=14 Score=37.81 Aligned_cols=98 Identities=7% Similarity=-0.021 Sum_probs=64.1
Q ss_pred HHhC-CCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC----CCHH-HHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 13 FEIA-VMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGV-ALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 13 Le~~-G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~----mdGl-eLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
|+.. ||+++.. .-..++.++.+.+ ..+|+|.+-. |.. +..+ ++++.|++....+.++||+=-..-+.
T Consensus 152 L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~-- 227 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINN-- 227 (262)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH--
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCH--
Confidence 8888 9996543 3478888899988 8999999988 764 2332 36667766532233665443333332
Q ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 84 av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
..+.+.||+.|..--....++...|...+..
T Consensus 228 -~~a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 228 -EIAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp -HHHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred -HHHHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 3366789888777667777777766655543
No 195
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=77.35 E-value=21 Score=35.98 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=64.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
+..+-..+.+.+|+.+... ..+|.|.+.- .|. .-|++.+++++... ...+|||.+.+- +.+.+.+++
T Consensus 135 ~~~iG~S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~ 209 (243)
T 3o63_A 135 DTLIGRSTHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVL 209 (243)
T ss_dssp TCEEEEEECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHH
T ss_pred CCEEEEeCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHH
Confidence 3343446789999877665 4799999976 553 23788899987641 147999999887 678899999
Q ss_pred hCCCCEEEe-----CCCCHHHHHHHHHHHH
Q 005631 89 SKGAVDFLV-----KPIRKNELKNLWQHVW 113 (687)
Q Consensus 89 ~aGA~DYL~-----KP~~~eeL~~~L~~al 113 (687)
..||+.+.+ +.-++.+....+..+|
T Consensus 210 ~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 210 DAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp HTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 999999876 4445555444444443
No 196
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=76.96 E-value=8.2 Score=39.22 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred CCeEE-EEeCCHHHHHHHHHhhCCCccEEEEcc-C-C---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC
Q 005631 17 VMKVI-TEATNGLQAWKILEDLTNHIDLVLTEV-M-P---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 90 (687)
Q Consensus 17 G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDl-M-P---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a 90 (687)
|+.++ ..+.+.+++.+..+. ..|+|+.=. . + +..+.++++++++. .++|||+..+-.+.+.+.+++..
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 77654 456777776665543 567663301 1 1 23357899999875 58999999999999999999999
Q ss_pred CCCEEEeC
Q 005631 91 GAVDFLVK 98 (687)
Q Consensus 91 GA~DYL~K 98 (687)
||+.+++=
T Consensus 200 GAdgViVG 207 (264)
T 1xm3_A 200 GADGVLLN 207 (264)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99998864
No 197
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=76.30 E-value=1.9 Score=42.85 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 4 LLAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 4 ~~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
..+.++..+|...|+. |..+.+ ... ..+|+||+|. ||...+ ...+|+++......
T Consensus 22 ~~~~~l~~~L~~~g~~-v~~~~~-------~~~--~~~~~ii~d~~~~~~~~--------------~~~~i~~~~~~~~~ 77 (254)
T 2ayx_A 22 SLCQFLETSLQRSGIV-VTTYEG-------QEP--TPEDVLITDEVVSKKWQ--------------GRAVVTFCRRHIGI 77 (254)
T ss_dssp HHHHHHHHHHTTTTEE-EEECSS-------CCC--CTTCEEEEESSCSCCCC--------------SSEEEEECSSCCCS
T ss_pred HHHHHHHHHHHHCCCE-EEEecC-------CCC--CcCcEEEEcCCCccccc--------------cceEEEEecccCCC
Confidence 4677889999999998 556654 122 5799999999 987533 12256666543210
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
....+...|+.||+...+|...+.+++
T Consensus 78 ----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 78 ----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp ----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred ----cccccCCceeccccchHHHHHHHHHHh
Confidence 012345689999999988888877665
No 198
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=75.68 E-value=21 Score=34.43 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--C----CC----CCHHHHHHHHHhhcCCCCceEEEE
Q 005631 7 MLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLVLTEV--M----PC----LSGVALLSKIMSHKTRKNLPVIMM 75 (687)
Q Consensus 7 ~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--M----P~----mdGleLL~~Ir~~~~~p~iPVIvm 75 (687)
.+++.+.+.. |..++..+.+.+++.+... ...|+|.+-. . .+ ..++++++++++. -.+|||..
T Consensus 108 ~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia~ 181 (223)
T 1y0e_A 108 ELVSYIRTHAPNVEIMADIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIAE 181 (223)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEEE
T ss_pred HHHHHHHHhCCCceEEecCCCHHHHHHHHH---cCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEEe
Confidence 3444444432 6666667888888877544 4578876532 1 11 2246788888876 37999999
Q ss_pred ecCCChHHHHHHHhCCCCEEEeC
Q 005631 76 SSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 76 Ta~~d~~~av~Am~aGA~DYL~K 98 (687)
.+-.+.+.+.++++.||+.+++=
T Consensus 182 GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 182 GNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCCCHHHHHHHHHcCCCEEEEC
Confidence 88889999999999999988774
No 199
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=75.64 E-value=20 Score=36.20 Aligned_cols=98 Identities=4% Similarity=0.020 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCeEEE--EeCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCHH-HHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVIT--EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGV-ALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~--~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdGl-eLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++. .--..++.++.+.+ ..||+|.+-. |+. +.-+ ++++.|++. .+.+||++--...+
T Consensus 140 ~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~~--~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 140 KNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLEN--GIKIPFACGGGAVN 215 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHTT--TCCCCEEEESTTCC
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHhc--CCCCcEEEECccCC
Confidence 35677889999999633 34677888888888 7899999988 653 4433 578888876 35677766544444
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
.+.+ -..||+.|-. +..+....+.+++
T Consensus 216 ~~~~---~~igad~~~~---da~~av~~~~~l~ 242 (258)
T 2i2x_B 216 QDFV---SQFALGVYGE---EAADAPKIADAII 242 (258)
T ss_dssp HHHH---HTSTTEEECS---STTHHHHHHHHHH
T ss_pred HHHH---HHcCCeEEEC---CHHHHHHHHHHHH
Confidence 3332 3778765544 3344444444443
No 200
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=75.63 E-value=16 Score=37.68 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=60.7
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
.+..|..++..+.+.+|+...+. ..+|+|=+.- +-.. -.++.+.+|...- ..++|||.-++-.+.+.+.++++
T Consensus 165 a~~lGl~~lvevh~~eEl~~A~~---~ga~iIGinnr~l~t~~~dl~~~~~L~~~i-p~~~~vIaesGI~t~edv~~l~~ 240 (272)
T 3tsm_A 165 AFALGMDALIEVHDEAEMERALK---LSSRLLGVNNRNLRSFEVNLAVSERLAKMA-PSDRLLVGESGIFTHEDCLRLEK 240 (272)
T ss_dssp HHHTTCEEEEEECSHHHHHHHTT---SCCSEEEEECBCTTTCCBCTHHHHHHHHHS-CTTSEEEEESSCCSHHHHHHHHT
T ss_pred HHHcCCeEEEEeCCHHHHHHHHh---cCCCEEEECCCCCccCCCChHHHHHHHHhC-CCCCcEEEECCCCCHHHHHHHHH
Confidence 45579998889999999876664 4789887664 3211 1255555665442 14789999999999999999999
Q ss_pred CCCCEEEe
Q 005631 90 KGAVDFLV 97 (687)
Q Consensus 90 aGA~DYL~ 97 (687)
.||+.+|+
T Consensus 241 ~Ga~gvLV 248 (272)
T 3tsm_A 241 SGIGTFLI 248 (272)
T ss_dssp TTCCEEEE
T ss_pred cCCCEEEE
Confidence 99999997
No 201
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=75.50 E-value=9.6 Score=43.93 Aligned_cols=101 Identities=7% Similarity=-0.032 Sum_probs=69.1
Q ss_pred HHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCC----CCHH-HHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 10 LLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGV-ALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 10 ~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~----mdGl-eLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
..+|+..||+++..- -..++.++.+.+ ..+|+|.+-. |.. +..+ ++++.|++......++||+=-..-+.
T Consensus 627 a~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tq 704 (763)
T 3kp1_A 627 HGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTP 704 (763)
T ss_dssp TTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCH
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCH
Confidence 467899999965443 468899999998 8999999998 765 3444 47777777642223555553333333
Q ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 82 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
+. +...||+.|..-.....++...|...++.
T Consensus 705 d~---AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 705 EV---AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HH---HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 32 45899998888777777777766665544
No 202
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=75.38 E-value=20 Score=42.12 Aligned_cols=108 Identities=11% Similarity=0.000 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~-md-GleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++..- .+.++.++.+.+ ..+|+|.+-. |.. +. ..++++.|++.. ..+++ ||+-+..-
T Consensus 621 ~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr~~G-~~dv~-VivGG~~P 696 (762)
T 2xij_A 621 AKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELNSLG-RPDIL-VMCGGVIP 696 (762)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHHTT-CTTSE-EEEEESCC
T ss_pred HHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHHhcC-CCCCE-EEEeCCCC
Confidence 4567788999999966543 357889999988 8999999977 643 22 345777888763 23443 44444233
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHh
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 117 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~~ 117 (687)
......+.+.|++.|+..--+..++...+...++...
T Consensus 697 ~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~~ 733 (762)
T 2xij_A 697 PQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCL 733 (762)
T ss_dssp GGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHHh
Confidence 3344556789999999866788888888777775543
No 203
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.24 E-value=0.95 Score=49.78 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=28.8
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+..||+ .|+.||||.++|+||=.. .+-+|+.|+
T Consensus 213 ~~prGvLL-yGPPGTGKTllAkAiA~e---~~~~f~~v~ 247 (434)
T 4b4t_M 213 RAPKGALM-YGPPGTGKTLLARACAAQ---TNATFLKLA 247 (434)
T ss_dssp CCCCEEEE-ESCTTSSHHHHHHHHHHH---HTCEEEEEE
T ss_pred CCCCeeEE-ECcCCCCHHHHHHHHHHH---hCCCEEEEe
Confidence 45556999 899999999999999544 455899998
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.15 E-value=0.99 Score=49.25 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=28.7
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+..||+ .|+.||||.++|+||=. ..+-+|+.|+
T Consensus 180 ~~prGvLL-~GPPGTGKTllAkAiA~---e~~~~f~~v~ 214 (405)
T 4b4t_J 180 AQPKGVIL-YGPPGTGKTLLARAVAH---HTDCKFIRVS 214 (405)
T ss_dssp CCCCCEEE-ESCSSSSHHHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCceEE-eCCCCCCHHHHHHHHHH---hhCCCceEEE
Confidence 44556999 89999999999999954 3456999998
No 205
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=75.07 E-value=21 Score=35.01 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=53.7
Q ss_pred HhCCCeEEEEe--CCHHHHHHHHHhhCC--CccEEEEcc-CCCCC-------HHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 14 EIAVMKVITEA--TNGLQAWKILEDLTN--HIDLVLTEV-MPCLS-------GVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 14 e~~G~~~V~~A--~sg~eALe~L~~~~~--~pDLVLlDl-MP~md-------GleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
+..|..+...+ .+..+.++.+.. . ..|.|+++. .|+.. +++.++++++. .+.+||++.-+-. .
T Consensus 110 ~~~g~~igv~~~p~t~~e~~~~~~~--~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~--~~~~pi~v~GGI~-~ 184 (228)
T 1h1y_A 110 KAKGMRPGVSLRPGTPVEEVFPLVE--AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKK--YPSLDIEVDGGLG-P 184 (228)
T ss_dssp HHTTCEEEEEECTTSCGGGGHHHHH--SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH--CTTSEEEEESSCS-T
T ss_pred HHcCCCEEEEEeCCCCHHHHHHHHh--cCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHh--cCCCCEEEECCcC-H
Confidence 44566644444 344556665554 3 689999988 88643 46777778776 2478887766544 4
Q ss_pred HHHHHHHhCCCCEEEe
Q 005631 82 GLVFKCLSKGAVDFLV 97 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~ 97 (687)
+.+.++++.||+-+++
T Consensus 185 ~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 185 STIDVAASAGANCIVA 200 (228)
T ss_dssp TTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 7788888889998876
No 206
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=75.06 E-value=14 Score=35.49 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=57.3
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCC-CceEEEEecCCChHHHHHHHhC
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK-NLPVIMMSSLDSMGLVFKCLSK 90 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p-~iPVIvmTa~~d~~~av~Am~a 90 (687)
..+..|...+..+.+..++++.+. ..+|+|++-. .+..|++.++++++. .+ ++|||...+-. .+.+.++++.
T Consensus 96 ~~~~~g~~~~~g~~t~~e~~~a~~---~G~d~v~v~~-t~~~g~~~~~~l~~~--~~~~ipvia~GGI~-~~~i~~~~~~ 168 (212)
T 2v82_A 96 RAVGYGMTVCPGCATATEAFTALE---AGAQALKIFP-SSAFGPQYIKALKAV--LPSDIAVFAVGGVT-PENLAQWIDA 168 (212)
T ss_dssp HHHHTTCEEECEECSHHHHHHHHH---TTCSEEEETT-HHHHCHHHHHHHHTT--SCTTCEEEEESSCC-TTTHHHHHHH
T ss_pred HHHHcCCCEEeecCCHHHHHHHHH---CCCCEEEEec-CCCCCHHHHHHHHHh--ccCCCeEEEeCCCC-HHHHHHHHHc
Confidence 344556654445889999877654 4689988632 012368888888875 34 69999888775 7888899999
Q ss_pred CCCEEEeC
Q 005631 91 GAVDFLVK 98 (687)
Q Consensus 91 GA~DYL~K 98 (687)
||+.+++=
T Consensus 169 Ga~gv~vG 176 (212)
T 2v82_A 169 GCAGAGLG 176 (212)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEC
Confidence 99998854
No 207
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=75.06 E-value=5.2 Score=41.21 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=55.5
Q ss_pred CCHHHHHHH---HHhhCCCccEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCceEEEEecC
Q 005631 25 TNGLQAWKI---LEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 25 ~sg~eALe~---L~~~~~~pDLVLlDl-M--P~mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
.+.+..+++ |.+ ...|+|=+.+ . |-.|| +++++++|+. ...+|||+|+-+
T Consensus 31 P~~~~~~~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~--~~~~Pivlm~Y~ 106 (271)
T 3nav_A 31 PNPEQSLAIMQTLID--AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRAR--NPETPIGLLMYA 106 (271)
T ss_dssp SCHHHHHHHHHHHHH--TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEEECH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEEEecC
Confidence 345555544 444 5689888887 4 33443 5677777765 368999999853
Q ss_pred ------CChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Q 005631 79 ------DSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 109 (687)
Q Consensus 79 ------~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L 109 (687)
+-...+.+|.++|++.+|+-.+.++|....+
T Consensus 107 n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 107 NLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred cHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 3355688889999999999778887754433
No 208
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=74.96 E-value=4.3 Score=41.67 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCHHHHHH---HHHhhCCCccEEEEcc-CCC--CCH--------------------HHHHHHHHhhcCCCCceEEEEecC
Q 005631 25 TNGLQAWK---ILEDLTNHIDLVLTEV-MPC--LSG--------------------VALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 25 ~sg~eALe---~L~~~~~~pDLVLlDl-MP~--mdG--------------------leLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
.+.+..++ .|.+ . .|+|.+++ ..+ .|| +++++.||+. ..+|||+|+-+
T Consensus 27 P~~~~~~~~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~ 100 (271)
T 1ujp_A 27 PSREGFLQAVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYL 100 (271)
T ss_dssp SCHHHHHHHHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCH
T ss_pred CChHHHHHHHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecC
Confidence 34444444 4455 5 99999998 532 333 4667788766 57999999643
Q ss_pred C------ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHH
Q 005631 79 D------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 79 ~------d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
. ....+..|..+|++.+|.-.+..+++...+..
T Consensus 101 n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~ 139 (271)
T 1ujp_A 101 NPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRL 139 (271)
T ss_dssp HHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHH
T ss_pred cHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 3 23456778889999999977777776655543
No 209
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.77 E-value=0.97 Score=49.75 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=28.4
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+..||+ +|+.||||.++|+||=.. .+-+|+.|+
T Consensus 213 ~~prGvLL-~GPPGtGKTllAkAiA~e---~~~~~~~v~ 247 (437)
T 4b4t_L 213 KPPKGVLL-YGPPGTGKTLLAKAVAAT---IGANFIFSP 247 (437)
T ss_dssp CCCCEEEE-ESCTTSSHHHHHHHHHHH---HTCEEEEEE
T ss_pred CCCCeEEE-ECCCCCcHHHHHHHHHHH---hCCCEEEEe
Confidence 44556999 899999999999999544 445899998
No 210
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=74.28 E-value=28 Score=36.73 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=58.2
Q ss_pred hCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC----C------------CCHHHHHHHHHhhcCCCCceEEEEec
Q 005631 15 IAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP----C------------LSGVALLSKIMSHKTRKNLPVIMMSS 77 (687)
Q Consensus 15 ~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP----~------------mdGleLL~~Ir~~~~~p~iPVIvmTa 77 (687)
..|..++..+.+.++|..... ..+|.|+++- -. + ...++++++|++. ..+|||+.-+
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~---~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaaGG 216 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEA---AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAAGG 216 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEESS
T ss_pred HCCCeEEEECCCHHHHHHHHH---cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEECC
Confidence 356776667888888776654 4689999853 21 1 2348899999876 4799999888
Q ss_pred CCChHHHHHHHhCCCCEEEe
Q 005631 78 LDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 78 ~~d~~~av~Am~aGA~DYL~ 97 (687)
-.+.+.+.+++..||+.+.+
T Consensus 217 I~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 217 IMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CCSHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999887664
No 211
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=74.04 E-value=17 Score=35.68 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhCCCcc-EEEEcc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe----
Q 005631 27 GLQAWKILEDLTNHID-LVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV---- 97 (687)
Q Consensus 27 g~eALe~L~~~~~~pD-LVLlDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~---- 97 (687)
..+.++.+.+ ..++ ++++++ -.+ .. .++++++|++. ..+|||...+-.+.+.+.++++.||+.+++
T Consensus 154 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal 228 (252)
T 1ka9_F 154 AVEWAVKGVE--LGAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVF 228 (252)
T ss_dssp HHHHHHHHHH--HTCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHH--cCCCEEEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHH
Confidence 3555555555 4566 455554 221 12 38999999876 479999999999999999999999999886
Q ss_pred --CCCCHHHHHHHH
Q 005631 98 --KPIRKNELKNLW 109 (687)
Q Consensus 98 --KP~~~eeL~~~L 109 (687)
.|+++.+++..+
T Consensus 229 ~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 229 HFGEIPIPKLKRYL 242 (252)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 456777776554
No 212
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=73.40 E-value=22 Score=37.11 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=59.7
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 14 e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
+..|+.++..+.+.++|....+ ..+|.|+++- -. ....++++++|++. -.+|||+.-+-.+.+.+.++
T Consensus 107 ~~~g~~v~~~v~~~~~a~~~~~---~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~~~a 180 (332)
T 2z6i_A 107 HEAGIIVIPVVPSVALAKRMEK---IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGAAAG 180 (332)
T ss_dssp HHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHH
T ss_pred HHcCCeEEEEeCCHHHHHHHHH---cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHHHHH
Confidence 3457776667888888766554 4689888864 22 23568899999876 47999999888889999999
Q ss_pred HhCCCCEEEe
Q 005631 88 LSKGAVDFLV 97 (687)
Q Consensus 88 m~aGA~DYL~ 97 (687)
+..||+...+
T Consensus 181 l~~GAdgV~v 190 (332)
T 2z6i_A 181 FMLGAEAVQV 190 (332)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCCEEEe
Confidence 9999987654
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=73.22 E-value=1.3 Score=41.40 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=30.1
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCc-ccCCCceecCChhhhhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAE-ITGSRRVPVTAAKECQDHEERC 233 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~-R~~~pFV~vn~~~~C~aipe~L 233 (687)
...+++ .|++||||.++|++|...-. ..+...+-++ +..+-+.+
T Consensus 38 g~~~~l-~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----~~~~~~~~ 82 (180)
T 3ec2_A 38 GKGLTF-VGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----TKDLIFRL 82 (180)
T ss_dssp CCEEEE-CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----HHHHHHHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----HHHHHHHH
Confidence 455777 79999999999999965543 4444555566 55554443
No 214
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=73.21 E-value=19 Score=42.10 Aligned_cols=106 Identities=11% Similarity=-0.002 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 6 AMLLLLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~-md-GleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
..++..+|+..||+++..- .+.++.++.+.+ ..+|+|.+-. |.. +. ..++++.|++.. ..+++ ||+-+..-
T Consensus 613 ~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~~~G-~~~i~-VivGG~~p 688 (727)
T 1req_A 613 QKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLG-RPDIL-ITVGGVIP 688 (727)
T ss_dssp HHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHHTT-CTTSE-EEEEESCC
T ss_pred HHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHHhcC-CCCCE-EEEcCCCc
Confidence 4567888999999965543 356889999988 8999999977 653 22 345777888763 23443 44444233
Q ss_pred hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Q 005631 81 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 81 ~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~ 115 (687)
......+.+.|++.|+.--.+..++...|...++.
T Consensus 689 ~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 689 EQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp GGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 33445567899999998667777777776666543
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.06 E-value=1.1 Score=49.07 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=28.3
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+..||+ .|+.||||.++|+||=.. .+-+|+.|+
T Consensus 204 ~~prGiLL-~GPPGtGKT~lakAiA~~---~~~~~~~v~ 238 (428)
T 4b4t_K 204 DPPRGVLL-YGPPGTGKTMLVKAVANS---TKAAFIRVN 238 (428)
T ss_dssp CCCCEEEE-ESCTTTTHHHHHHHHHHH---HTCEEEEEE
T ss_pred CCCceEEE-ECCCCCCHHHHHHHHHHH---hCCCeEEEe
Confidence 44455888 899999999999999544 456899998
No 216
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=72.44 E-value=13 Score=35.52 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHhCCCeEEEE---eCCHHHHHHHHHhhCCCccEEEEcc-CC----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 13 FEIAVMKVITE---ATNGLQAWKILEDLTNHIDLVLTEV-MP----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 13 Le~~G~~~V~~---A~sg~eALe~L~~~~~~pDLVLlDl-MP----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
++..|..++.. ..+..+.++.+.+ ...|+|.++. .. ...+++.+++|++. .+.+||++-.+-. .+.+
T Consensus 99 ~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~--~~~~~i~~~gGI~-~~~~ 173 (211)
T 3f4w_A 99 AKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAGRKPIDDLITMLKV--RRKARIAVAGGIS-SQTV 173 (211)
T ss_dssp HHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTTCCSHHHHHHHHHH--CSSCEEEEESSCC-TTTH
T ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccCCCCHHHHHHHHHH--cCCCcEEEECCCC-HHHH
Confidence 34457664322 2455454555554 4588887763 21 11367889999876 3578888776664 8889
Q ss_pred HHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 114 (687)
Q Consensus 85 v~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr 114 (687)
.++++.||+.+++ +.-++.+....+...++
T Consensus 174 ~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 174 KDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp HHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 9999999998875 45455554444444443
No 217
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=71.11 E-value=22 Score=34.47 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=54.8
Q ss_pred CHHHHHHHHHhhCCCccEEEE-ccCCC----CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe---
Q 005631 26 NGLQAWKILEDLTNHIDLVLT-EVMPC----LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--- 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLl-DlMP~----mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~--- 97 (687)
+..+.++.+.+ ..+|.|++ .+-++ .-.++++++|++. ..+|||+..+-.+.+.+.++++.||+.+++
T Consensus 155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsa 229 (253)
T 1h5y_A 155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASL 229 (253)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHH
Confidence 44555555555 45787765 33322 2257888999876 479999988888889999999999999875
Q ss_pred ---CCCCHHHHHHHH
Q 005631 98 ---KPIRKNELKNLW 109 (687)
Q Consensus 98 ---KP~~~eeL~~~L 109 (687)
.+++..+++..+
T Consensus 230 l~~~~~~~~~~~~~l 244 (253)
T 1h5y_A 230 FHFRVLSIAQVKRYL 244 (253)
T ss_dssp HHTTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 345555555544
No 218
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=70.96 E-value=8 Score=38.19 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEE--cc-CC-CCCH-HHHHHHHHhhcCCCCceEEEEecC
Q 005631 6 AMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLT--EV-MP-CLSG-VALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLl--Dl-MP-~mdG-leLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
..++..+|+..||+++.. --..++.++.+.+ ..||+|.+ -. |. .+.. -++++.|++.....++||++=-+.
T Consensus 109 ~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~ 186 (215)
T 3ezx_A 109 HRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAP 186 (215)
T ss_dssp HHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSS
T ss_pred HHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 356788999999996544 3467788899988 89999999 77 63 3333 357778887632236777665544
Q ss_pred CChHHHHHHHhCCCCEEEe
Q 005631 79 DSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 79 ~d~~~av~Am~aGA~DYL~ 97 (687)
-+.+.+ -+.||+.|-.
T Consensus 187 ~~~~~a---~~iGad~~~~ 202 (215)
T 3ezx_A 187 VSDKWI---EEIGADATAE 202 (215)
T ss_dssp CCHHHH---HHHTCCBCCS
T ss_pred CCHHHH---HHhCCeEEEC
Confidence 554433 3458877744
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.29 E-value=1.5 Score=48.29 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.-+..||+ .|+.||||.++|+||=.. .+-+|+.|+
T Consensus 214 ~~prGvLL-yGPPGTGKTlLAkAiA~e---~~~~fi~v~ 248 (437)
T 4b4t_I 214 KPPKGVIL-YGAPGTGKTLLAKAVANQ---TSATFLRIV 248 (437)
T ss_dssp CCCSEEEE-ESSTTTTHHHHHHHHHHH---HTCEEEEEE
T ss_pred CCCCCCce-ECCCCchHHHHHHHHHHH---hCCCEEEEE
Confidence 44556999 899999999999999544 445899998
No 220
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=69.08 E-value=11 Score=36.45 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 7 MLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.++..+|+..||+++.. .-..++.++.+++ ..||+|.+-. |+. +.. .++++.|++....+++||++--...+.
T Consensus 106 ~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~ 183 (210)
T 1y80_A 106 NLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQ 183 (210)
T ss_dssp HHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCH
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCH
Confidence 56788899999995432 2356777888887 7899999988 653 333 347777776532245877766554454
Q ss_pred HHHHHHHhCCCCEEEe
Q 005631 82 GLVFKCLSKGAVDFLV 97 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~ 97 (687)
+.+ -+.||+.|..
T Consensus 184 ~~~---~~~gad~~~~ 196 (210)
T 1y80_A 184 DFA---DEIGADGYAP 196 (210)
T ss_dssp HHH---HHHTCSEECS
T ss_pred HHH---HHcCCeEEEC
Confidence 333 4468876643
No 221
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=68.39 E-value=40 Score=32.37 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=49.4
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEcc-CC--------CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCC
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEV-MP--------CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 93 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDl-MP--------~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~ 93 (687)
.+.+..++.+... ..+|.|++.. .| ...|+++++++++. .+.+|||+.-+-. .+.+.+++..||+
T Consensus 122 s~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~--~~~~pvia~GGI~-~~nv~~~~~~Ga~ 195 (227)
T 2tps_A 122 SAHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ--GISIPIVGIGGIT-IDNAAPVIQAGAD 195 (227)
T ss_dssp EECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT--TCCCCEEEESSCC-TTTSHHHHHTTCS
T ss_pred ecCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh--CCCCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 3578888666554 3689999743 33 12478999999875 2348988877766 7788888899999
Q ss_pred EEEe
Q 005631 94 DFLV 97 (687)
Q Consensus 94 DYL~ 97 (687)
.+.+
T Consensus 196 gv~v 199 (227)
T 2tps_A 196 GVSM 199 (227)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 222
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=68.32 E-value=45 Score=36.11 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEEccC------------CCCCHHHHHHHHHhhcCCCCceEEE
Q 005631 8 LLLLCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLTEVM------------PCLSGVALLSKIMSHKTRKNLPVIM 74 (687)
Q Consensus 8 ll~~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDlM------------P~mdGleLL~~Ir~~~~~p~iPVIv 74 (687)
+++.+.+..+..++ ..+.+.++|..+++ ...|.|++-.= .+...+.++..+.+.-....+|||.
T Consensus 175 ~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~---aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA 251 (400)
T 3ffs_A 175 TLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 251 (400)
T ss_dssp HHHHHHTTCCCEEEEEEECSHHHHHHHHH---TTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEE
T ss_pred HHHHHHhcCCCeEEEeecCCHHHHHHHHH---cCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEe
Confidence 34444444466654 36899999988765 47898887310 1233567777776542124799998
Q ss_pred EecCCChHHHHHHHhCCCCEEEe
Q 005631 75 MSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 75 mTa~~d~~~av~Am~aGA~DYL~ 97 (687)
--+-.+...+.+++.+||+....
T Consensus 252 ~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 252 DGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp ESCCCSHHHHHHHHTTTCSEEEE
T ss_pred cCCCCCHHHHHHHHHcCCCEEEE
Confidence 88888999999999999998765
No 223
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=67.87 E-value=6.6 Score=39.46 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=48.1
Q ss_pred HHHHHhhCCCccEEEEcc-CC--CCC--------------------HHHHHHHHHhhcCCCCceEEEEecCCChH---HH
Q 005631 31 WKILEDLTNHIDLVLTEV-MP--CLS--------------------GVALLSKIMSHKTRKNLPVIMMSSLDSMG---LV 84 (687)
Q Consensus 31 Le~L~~~~~~pDLVLlDl-MP--~md--------------------GleLL~~Ir~~~~~p~iPVIvmTa~~d~~---~a 84 (687)
++.+.+ ...|+|-+++ +. -+| ++++++.|++. .++||++|+... .. .+
T Consensus 38 ~~~l~~--~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~---~~~Pv~~m~~~~-~~~~~~~ 111 (262)
T 1rd5_A 38 LRLLDG--CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE---LSCPVVLLSYYK-PIMFRSL 111 (262)
T ss_dssp HHHHHH--TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG---CSSCEEEECCSH-HHHSCCT
T ss_pred HHHHHH--cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCc-HHHHHHH
Confidence 334444 5699999998 64 234 45667777765 579999886332 21 12
Q ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 85 FKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 85 v~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
..|.+.||+.+++-....+++...+.
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~ 137 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWS 137 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHH
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHH
Confidence 34889999999986566556554444
No 224
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=67.75 E-value=17 Score=35.67 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-CCC---CCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC---CCCEEEe
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-MPC---LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK---GAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-MP~---mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a---GA~DYL~ 97 (687)
+..+.++.+.+ ..+| |+++++ -.+ .-.++++++|++. ..+|||...+-.+.+.+.++++. ||+.+++
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 56666666666 5677 445665 221 1247899999875 47999999999999999999999 9998875
Q ss_pred ------CCCCHHHHHHHH
Q 005631 98 ------KPIRKNELKNLW 109 (687)
Q Consensus 98 ------KP~~~eeL~~~L 109 (687)
.|+++.+++..+
T Consensus 222 G~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 222 GKALYAKAFTLEEALEAT 239 (244)
T ss_dssp CHHHHTTSSCHHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHHh
Confidence 456665555443
No 225
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=67.75 E-value=44 Score=34.75 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC---------------------------C--------CCHHHHHH
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP---------------------------C--------LSGVALLS 59 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP---------------------------~--------mdGleLL~ 59 (687)
.+..+|..+.+..||++.+.. .+|+|.+.. -. + ...+++++
T Consensus 124 ~g~~vvv~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~ 200 (297)
T 4adt_A 124 FKTPFVCGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLIL 200 (297)
T ss_dssp CSSCEEEEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHH
Confidence 355666789999999988875 588887753 11 0 22467888
Q ss_pred HHHhhcCCCCceEEE--EecCCChHHHHHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 005631 60 KIMSHKTRKNLPVIM--MSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 114 (687)
Q Consensus 60 ~Ir~~~~~p~iPVIv--mTa~~d~~~av~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr 114 (687)
+|++. -.+|||+ ..+-.+.+.+.+++.+||+.+++ |--++.+....+..++.
T Consensus 201 ~i~~~---~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~ 259 (297)
T 4adt_A 201 LTRKL---KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS 259 (297)
T ss_dssp HHHHH---TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH
Confidence 88776 3577764 45556899999999999999986 44455555555555544
No 226
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=67.44 E-value=11 Score=38.31 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=55.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEccC-----CCC-CHHHHHHHHHhhcCCCCceEEE-EecCCChHHHHHHHhCCCCEEEeC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEVM-----PCL-SGVALLSKIMSHKTRKNLPVIM-MSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDlM-----P~m-dGleLL~~Ir~~~~~p~iPVIv-mTa~~d~~~av~Am~aGA~DYL~K 98 (687)
+..+.++.+.+ ...|++-+|+| |.+ -|.++++.||.. .+++|+.+ |--.+-...+..+.++||+-+.+-
T Consensus 41 ~L~~~i~~l~~--~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~--~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLA--AGADNIHFDVMDNHYVPNLTFGPMVLKALRDY--GITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHH--TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHH--TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHH--cCCCEEEEEecCCCcCcchhcCHHHHHHHHHh--CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 46788898887 67888888884 333 389999999987 45677644 222233457778889999877666
Q ss_pred CCCHHHHHHHHHHH
Q 005631 99 PIRKNELKNLWQHV 112 (687)
Q Consensus 99 P~~~eeL~~~L~~a 112 (687)
....+.+...|+.+
T Consensus 117 ~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 117 PEASEHIDRSLQLI 130 (246)
T ss_dssp GGGCSCHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 54444555555443
No 227
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=67.37 E-value=2 Score=40.39 Aligned_cols=26 Identities=4% Similarity=-0.022 Sum_probs=20.8
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCc
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
+..++| +|++||||.++|++|...-.
T Consensus 45 ~~~~ll-~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLF-SGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEE-ECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhc
Confidence 345777 89999999999999976443
No 228
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=67.35 E-value=1.4 Score=39.81 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 191 SDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 191 ~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
+.|.+|+||.++|+.+ .+.+-+||.+
T Consensus 6 l~G~~GsGKsT~a~~L----~~~g~~~i~~ 31 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL----KERGAKVIVM 31 (179)
T ss_dssp EECCTTSCHHHHHHHH----HHTTCEEEEH
T ss_pred EECCCCCCHHHHHHHH----HHCCCcEEEH
Confidence 3899999999999999 3444455554
No 229
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=67.17 E-value=0.96 Score=45.73 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=25.7
Q ss_pred ccccCCCCCCCChhHHHHHhhhc--CcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSN--AEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~--S~R~~~pFV~vn 221 (687)
++++ +|+.||||.++|++|+.. ......+|+.++
T Consensus 48 ~~ll-~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 48 HLLF-AGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp EEEE-ESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred eEEE-ECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 4777 899999999999999865 332334577777
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.48 E-value=2.1 Score=50.70 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=30.9
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
-+..||+ +|+.||||.++||+|=. ..+-+|+.|+ |..+-
T Consensus 237 ~p~GILL-~GPPGTGKT~LAraiA~---elg~~~~~v~----~~~l~ 275 (806)
T 3cf2_A 237 PPRGILL-YGPPGTGKTLIARAVAN---ETGAFFFLIN----GPEIM 275 (806)
T ss_dssp CCCEEEE-ECCTTSCHHHHHHHHHT---TTTCEEEEEE----HHHHH
T ss_pred CCCeEEE-ECCCCCCHHHHHHHHHH---HhCCeEEEEE----hHHhh
Confidence 3445888 89999999999999953 4566899999 76653
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.36 E-value=1.7 Score=51.42 Aligned_cols=43 Identities=7% Similarity=-0.052 Sum_probs=31.0
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCcc-------cCCCceecCChhhhhhhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAEI-------TGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~R-------~~~pFV~vn~~~~C~aip 230 (687)
....++++ .|++||||.++|++|+....+ .+.+|+.++ |+++-
T Consensus 189 ~~~~~vlL-~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~----~~~l~ 238 (854)
T 1qvr_A 189 RTKNNPVL-IGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ----MGSLL 238 (854)
T ss_dssp SSCCCCEE-EECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC----C----
T ss_pred CCCCceEE-EcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee----hHHhh
Confidence 45556777 799999999999999876533 367889988 76653
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.88 E-value=2.2 Score=50.37 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHE 230 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aip 230 (687)
...||+ .|++||||.++|++|.... ..+||.|+ |..+-
T Consensus 511 ~~~vLL-~GppGtGKT~Lakala~~~---~~~~i~v~----~~~l~ 548 (806)
T 1ypw_A 511 SKGVLF-YGPPGCGKTLLAKAIANEC---QANFISIK----GPELL 548 (806)
T ss_dssp CCCCCC-BCCTTSSHHHHHHHHHHHH---TCCCCCCC----CSSST
T ss_pred CceeEE-ECCCCCCHHHHHHHHHHHh---CCCEEEEe----chHhh
Confidence 334777 7999999999999999776 45899999 76554
No 233
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=65.59 E-value=21 Score=35.53 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhhCCCccEEEE-cc-C---CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 26 NGLQAWKILEDLTNHIDLVLT-EV-M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLl-Dl-M---P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
+..+..+.+.. ..++.|++ ++ - ...-.++++++|++. ..+|||...+-.+.+.+.++++.||+.+++=
T Consensus 157 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 157 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTTCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred hHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34565566666 56776664 43 1 111248899999876 5899999999999999999999999998764
No 234
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=64.03 E-value=18 Score=36.41 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=58.5
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhh-CCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDL-TNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 90 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~-~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a 90 (687)
.+...+.-.|....+.++++++++.. ...+.+|=+. +-.-++++++++|++. ++.+ +|-.-.--+.+.+..|+.+
T Consensus 30 ~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt-~~t~~a~e~I~~l~~~--~~~~-~iGaGTVlt~~~a~~Ai~A 105 (232)
T 4e38_A 30 QLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEIT-FRSDAAVEAIRLLRQA--QPEM-LIGAGTILNGEQALAAKEA 105 (232)
T ss_dssp HHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEE-TTSTTHHHHHHHHHHH--CTTC-EEEEECCCSHHHHHHHHHH
T ss_pred HHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-CCCCCHHHHHHHHHHh--CCCC-EEeECCcCCHHHHHHHHHc
Confidence 34445665577788888888776531 0345544333 5555789999999986 4554 3333334568999999999
Q ss_pred CCCEEEeCCCCHHHHH
Q 005631 91 GAVDFLVKPIRKNELK 106 (687)
Q Consensus 91 GA~DYL~KP~~~eeL~ 106 (687)
|| +||.-|-...++.
T Consensus 106 GA-~fIvsP~~~~~vi 120 (232)
T 4e38_A 106 GA-TFVVSPGFNPNTV 120 (232)
T ss_dssp TC-SEEECSSCCHHHH
T ss_pred CC-CEEEeCCCCHHHH
Confidence 99 5667774434443
No 235
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=63.89 E-value=46 Score=32.56 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhhCCCcc-EEEEcc-----CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC-----C-CC
Q 005631 26 NGLQAWKILEDLTNHID-LVLTEV-----MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-----G-AV 93 (687)
Q Consensus 26 sg~eALe~L~~~~~~pD-LVLlDl-----MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a-----G-A~ 93 (687)
+..+..+.+.+ ..++ |+++++ +.+. .++++++|++. ..+|||...+-.+.+.+.++++. | |+
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCCC-CHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCcC-CHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 55666666665 5677 555553 2233 48999999876 47999999999999999999998 9 98
Q ss_pred EEEe------CCCCHHHHHHH
Q 005631 94 DFLV------KPIRKNELKNL 108 (687)
Q Consensus 94 DYL~------KP~~~eeL~~~ 108 (687)
.+++ .++++.+++..
T Consensus 219 gv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHHH
Confidence 8775 57777776654
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=63.48 E-value=2.3 Score=39.20 Aligned_cols=30 Identities=7% Similarity=-0.025 Sum_probs=22.7
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ +|.+|+||+++|+++-..- +.+|+.++
T Consensus 6 i~l-~G~~GsGKST~a~~La~~l---~~~~~~~~ 35 (178)
T 1qhx_A 6 IIL-NGGSSAGKSGIVRCLQSVL---PEPWLAFG 35 (178)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHHS---SSCEEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHhc---CCCeEEec
Confidence 444 8999999999999986543 34777654
No 237
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=63.47 E-value=2.7 Score=43.43 Aligned_cols=26 Identities=4% Similarity=-0.056 Sum_probs=20.6
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcC
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S 210 (687)
.+..+++ +|+.||||.++|+++...-
T Consensus 37 ~~~~~ll-~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 37 IHHAYLF-SGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CCSEEEE-ESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 3345677 8999999999999997543
No 238
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=63.35 E-value=39 Score=32.12 Aligned_cols=92 Identities=8% Similarity=0.015 Sum_probs=60.3
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCC
Q 005631 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 92 (687)
Q Consensus 14 e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA 92 (687)
+..|..++.-+.+..++.+.+. ...|+|-+.. .+ -|++++++++.. .+++||+...+-. .+.+.+++.+||
T Consensus 101 ~~~g~~vi~g~~t~~e~~~a~~---~Gad~vk~~~~~~--~g~~~~~~l~~~--~~~~pvia~GGI~-~~~~~~~~~~Ga 172 (205)
T 1wa3_A 101 KEKGVFYMPGVMTPTELVKAMK---LGHTILKLFPGEV--VGPQFVKAMKGP--FPNVKFVPTGGVN-LDNVCEWFKAGV 172 (205)
T ss_dssp HHHTCEEECEECSHHHHHHHHH---TTCCEEEETTHHH--HHHHHHHHHHTT--CTTCEEEEBSSCC-TTTHHHHHHHTC
T ss_pred HHcCCcEECCcCCHHHHHHHHH---cCCCEEEEcCccc--cCHHHHHHHHHh--CCCCcEEEcCCCC-HHHHHHHHHCCC
Confidence 3345554444557888777655 4688876653 22 378899999865 4588988877664 678899999999
Q ss_pred CEEEeCC----CCHHHHHHHHHHHH
Q 005631 93 VDFLVKP----IRKNELKNLWQHVW 113 (687)
Q Consensus 93 ~DYL~KP----~~~eeL~~~L~~al 113 (687)
+.+..=- -++.++...++++.
T Consensus 173 ~~v~vGs~i~~~d~~~~~~~~~~~~ 197 (205)
T 1wa3_A 173 LAVGVGSALVKGTPDEVREKAKAFV 197 (205)
T ss_dssp SCEEECHHHHCSCHHHHHHHHHHHH
T ss_pred CEEEECccccCCCHHHHHHHHHHHH
Confidence 8876521 24444444444443
No 239
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=63.10 E-value=36 Score=36.42 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHHHHHhC-CCeEE-EEeCCHHHHHHHHHhhCCCccEEEEccCC------------CCCHHHHHHHHHhhcCCCCceEE
Q 005631 8 LLLLCFEIA-VMKVI-TEATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRKNLPVI 73 (687)
Q Consensus 8 ll~~lLe~~-G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDlMP------------~mdGleLL~~Ir~~~~~p~iPVI 73 (687)
+++.+-+.. +..++ ..+.+.++|...++ ..+|.|.+-.-+ +...++++..+++......+|||
T Consensus 184 ~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVi 260 (404)
T 1eep_A 184 LIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICII 260 (404)
T ss_dssp HHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEE
Confidence 344444444 56644 36788887766654 468988882111 22245666666653212479999
Q ss_pred EEecCCChHHHHHHHhCCCCEEEe
Q 005631 74 MMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 74 vmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
...+-.+...+.+++.+||+....
T Consensus 261 a~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 261 ADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp EESCCCSHHHHHHHHHHTCSEEEE
T ss_pred EECCCCCHHHHHHHHHcCCCHHhh
Confidence 988888999999999999988776
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.06 E-value=2.6 Score=40.15 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.8
Q ss_pred CCccccCCCCCCCChhHHHHHhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH 207 (687)
...+.| .|.+|+||+++|+.|-
T Consensus 29 g~~i~l-~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVV-MGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHH
T ss_pred CcEEEE-ECCCCCCHHHHHHHHH
Confidence 334555 7999999999999984
No 241
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=62.91 E-value=1.5 Score=48.93 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=29.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHh-hhcCcccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVI-HSNAEITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraI-H~~S~R~~~pFV~vn 221 (687)
+++..||| .|++|| |+++|++| |..++|. .|++..
T Consensus 237 rgdihVLL-~G~PGt-KS~Lar~i~~~i~pR~--~ft~g~ 272 (506)
T 3f8t_A 237 SERLHVLL-AGYPVV-CSEILHHVLDHLAPRG--VYVDLR 272 (506)
T ss_dssp GGCCCEEE-ESCHHH-HHHHHHHHHHHTCSSE--EEEEGG
T ss_pred CCceeEEE-ECCCCh-HHHHHHHHHHHhCCCe--EEecCC
Confidence 45668999 799999 99999999 9999995 477654
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.89 E-value=2.4 Score=43.10 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=24.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.|++ .|++||||.++|++|-.... -+||.++
T Consensus 46 GvlL-~Gp~GtGKTtLakala~~~~---~~~i~i~ 76 (274)
T 2x8a_A 46 GVLL-AGPPGCGKTLLAKAVANESG---LNFISVK 76 (274)
T ss_dssp EEEE-ESSTTSCHHHHHHHHHHHTT---CEEEEEE
T ss_pred eEEE-ECCCCCcHHHHHHHHHHHcC---CCEEEEE
Confidence 3777 79999999999999965433 2688887
No 243
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=62.86 E-value=26 Score=34.39 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhhCCCcc-EEEEcc-CCCCCH---HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 25 TNGLQAWKILEDLTNHID-LVLTEV-MPCLSG---VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pD-LVLlDl-MP~mdG---leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+..+..+.+.+ ...| |.+.|. ...... +++++.|++. ..+|||+.....+.+.+.+++..||+..+.
T Consensus 31 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 31 GDPVEAARAYDE--AGADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp TCHHHHHHHHHH--HTCSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHH--cCCCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 456666666665 4455 556677 443322 4566777654 589999999999999999999999887766
No 244
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=62.07 E-value=97 Score=32.14 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=58.3
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CC--CCCH----------HHHHH----HHHhhcCCCCceEE
Q 005631 11 LCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MP--CLSG----------VALLS----KIMSHKTRKNLPVI 73 (687)
Q Consensus 11 ~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP--~mdG----------leLL~----~Ir~~~~~p~iPVI 73 (687)
...++.|+..+.++.+.++|..+... .||+|++.+ +- +.-| .+.++ .+++. .|++.|+
T Consensus 157 ~~A~~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~v--npdvivL 231 (286)
T 2p10_A 157 AEAHKLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTI--RDDIIIL 231 (286)
T ss_dssp HHHHHTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHH--CSCCEEE
T ss_pred HHHHHCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHh--CCCcEEE
Confidence 34567788888899999999988765 799999987 53 2212 23333 33444 3666444
Q ss_pred EEe-cCCChHHHHHHHhC--CCCEEEeCC
Q 005631 74 MMS-SLDSMGLVFKCLSK--GAVDFLVKP 99 (687)
Q Consensus 74 vmT-a~~d~~~av~Am~a--GA~DYL~KP 99 (687)
.-. .-.+.+++..+++. |++.|+.-.
T Consensus 232 c~gGpIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 232 SHGGPIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp EESTTCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred ecCCCCCCHHHHHHHHhcCCCccEEEeeh
Confidence 433 34689999999999 999999875
No 245
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=61.60 E-value=58 Score=32.94 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCCeEEE-E---eCCHHHHHHHHHhhCCCccEEEE---------cc-C--C-------CCCH-------H
Q 005631 6 AMLLLLCFEIAVMKVIT-E---ATNGLQAWKILEDLTNHIDLVLT---------EV-M--P-------CLSG-------V 55 (687)
Q Consensus 6 r~ll~~lLe~~G~~~V~-~---A~sg~eALe~L~~~~~~pDLVLl---------Dl-M--P-------~mdG-------l 55 (687)
..+++.+-+..++.++. . ..+..+..+.+.+ ...|.|.+ +. - | +.+| +
T Consensus 153 ~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~--~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~ 230 (311)
T 1ep3_A 153 AALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230 (311)
T ss_dssp HHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH--TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH--cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHH
Confidence 44555555544555322 1 2355666667776 67898877 32 1 1 0122 4
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe------CCCCHHHHHHHHHHHHH
Q 005631 56 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV------KPIRKNELKNLWQHVWR 114 (687)
Q Consensus 56 eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~------KP~~~eeL~~~L~~alr 114 (687)
+++++|++. -.+|||..-+-.+.+.+.+++..||+...+ -|.-+.++..-+..++.
T Consensus 231 ~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~ 292 (311)
T 1ep3_A 231 KLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD 292 (311)
T ss_dssp HHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence 778888765 479999888888999999999999876543 45545555555554443
No 246
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=61.46 E-value=50 Score=32.37 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=52.8
Q ss_pred HHHhCCCeEEEEeC--CHHHHHHHHHhhCCCcc-EEEEcc-CCCCC---------HHHHHHHHHhhcCCCCceEEEEecC
Q 005631 12 CFEIAVMKVITEAT--NGLQAWKILEDLTNHID-LVLTEV-MPCLS---------GVALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 12 lLe~~G~~~V~~A~--sg~eALe~L~~~~~~pD-LVLlDl-MP~md---------GleLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
+++..|...+..+. +..+.++.+.. . .| +|.+ + .|+.. .++++++|++. ..+||++--+-
T Consensus 128 ~~~~~g~~~~~~i~~~t~~e~~~~~~~--~-~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~---~~~pi~~~GGI 200 (248)
T 1geq_A 128 IAREEGIKTVFLAAPNTPDERLKVIDD--M-TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRI---CRNKVAVGFGV 200 (248)
T ss_dssp HHHHHTCEEEEEECTTCCHHHHHHHHH--H-CSSEEEE-ECCC-------CCCHHHHHHHHHHHHH---CSSCEEEESCC
T ss_pred HHHHhCCCeEEEECCCCHHHHHHHHHh--c-CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhh---cCCCEEEEeec
Confidence 34445655443333 55677766665 2 44 6655 5 55433 35677888776 37899888888
Q ss_pred CChHHHHHHHhCCCCEEEeC
Q 005631 79 DSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 79 ~d~~~av~Am~aGA~DYL~K 98 (687)
...+.+.+++.+||+.+++=
T Consensus 201 ~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 201 SKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 88799999999999999874
No 247
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=60.98 E-value=47 Score=32.31 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhhCCCccEE--EEc-cCCC-----CCHHHHHHHHHhhcCCCCceEEEEec
Q 005631 7 MLLLLCFEIA-VMKVITEATNGLQAWKILEDLTNHIDLV--LTE-VMPC-----LSGVALLSKIMSHKTRKNLPVIMMSS 77 (687)
Q Consensus 7 ~ll~~lLe~~-G~~~V~~A~sg~eALe~L~~~~~~pDLV--LlD-lMP~-----mdGleLL~~Ir~~~~~p~iPVIvmTa 77 (687)
.+++.+.+.. +..++..+.+.+++...+. ...|+| .+- +.|. ...++++++++.. .+|||...+
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~---~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~----~ipvia~GG 194 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQ---AGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA----GIAVIAEGK 194 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT----TCCEEEESC
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC----CCCEEEECC
Confidence 3444444332 5665556788888877665 468988 222 2232 1246788888753 699999888
Q ss_pred CCChHHHHHHHhCCCCEEEeC
Q 005631 78 LDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 78 ~~d~~~av~Am~aGA~DYL~K 98 (687)
-.+.+.+.+++++||+.+++=
T Consensus 195 I~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 195 IHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CCSHHHHHHHHTTCCSEEEEC
T ss_pred CCCHHHHHHHHHCCCCEEEEc
Confidence 888999999999999988753
No 248
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=60.83 E-value=19 Score=37.47 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEc------------------------c--C-----------CCCCHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTE------------------------V--M-----------PCLSGVALLS 59 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlD------------------------l--M-----------P~mdGleLL~ 59 (687)
+.-.|.-+.+..||++.+.. ..|+|=+= + | .....|++++
T Consensus 115 ~vpfv~~~~~l~EAlrri~e---GA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~ 191 (291)
T 3o07_A 115 KVPFVCGAKDLGEALRRINE---GAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLK 191 (291)
T ss_dssp SSCEEEEESSHHHHHHHHHH---TCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcEEeeCCCHHHHHHHHHC---CCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHH
Confidence 33446679999999999886 68888763 1 2 1123588999
Q ss_pred HHHhhcCCCCceEEEE--ecCCChHHHHHHHhCCCCEEEeC-----CCCHHHHHHHHHHHHHHH
Q 005631 60 KIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLVK-----PIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 60 ~Ir~~~~~p~iPVIvm--Ta~~d~~~av~Am~aGA~DYL~K-----P~~~eeL~~~L~~alr~~ 116 (687)
+|++. ..+|||++ .+-.+++.+.++++.|++..++= --++......+..++...
T Consensus 192 ~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 192 DVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp HHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred HHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 99887 57999987 44457899999999999999864 334666666666666543
No 249
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=60.72 E-value=76 Score=30.79 Aligned_cols=92 Identities=4% Similarity=-0.064 Sum_probs=64.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 94 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D 94 (687)
.|...+.-+.+..|+++.++. ..|.|-+ . -+..-|++.++.++.. .+.+||+.+-+- +.+.+.+.+.+||+.
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~---Gad~v~~-fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI-~~~n~~~~l~aGa~~ 175 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL---GLSALKF-FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGI-KEEHLPHYAALPNLL 175 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT---TCCEEEE-TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSC-CGGGHHHHHTCSSBS
T ss_pred hCCCEEecCCCHHHHHHHHHC---CCCEEEE-ecCccccCHHHHHHHHhh--CCCCcEEEeCCC-CHHHHHHHHhCCCcE
Confidence 455444458889999887764 6888866 3 2223489999999876 578999876554 468999999999876
Q ss_pred EE-----eCCCCHHHHHHHHHHHHHH
Q 005631 95 FL-----VKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 95 YL-----~KP~~~eeL~~~L~~alr~ 115 (687)
+. .+ -+++++....+++++.
T Consensus 176 vavgSai~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 176 AVGGSWLLQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp CEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred EEEehhhhC-CCHHHHHHHHHHHHHH
Confidence 54 33 4566777777766554
No 250
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=60.41 E-value=14 Score=36.19 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHHHhCCCeEEEE---eCCH--HHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 11 LCFEIAVMKVITE---ATNG--LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 11 ~lLe~~G~~~V~~---A~sg--~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
...+..|...+.. .++. +-+++.+.. ..||+| ++||+.-- ++++++++. ..+|||.=-.-.+.+.+.
T Consensus 95 ~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~--~~PD~i--EiLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~edv~ 166 (192)
T 3kts_A 95 MKAKQHKMLAIQRLFMIDSSAYNKGVALIQK--VQPDCI--ELLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSEQVN 166 (192)
T ss_dssp HHHHHTTCEEEEEEECCSHHHHHHHHHHHHH--HCCSEE--EEECTTCH-HHHHHHHHH---HCCCEEEESSCCSHHHHH
T ss_pred HHHHHCCCeEEEEEEEEEcchHHHHHHHHhh--cCCCEE--EECCchhH-HHHHHHHHh---cCCCEEEECCcCCHHHHH
Confidence 3455666654322 2222 347788887 789977 45888653 789999887 588988776678899999
Q ss_pred HHHhCCCCEEEe
Q 005631 86 KCLSKGAVDFLV 97 (687)
Q Consensus 86 ~Am~aGA~DYL~ 97 (687)
+|+++||+..-+
T Consensus 167 ~al~aGA~aVsT 178 (192)
T 3kts_A 167 QVIASGAIAVTT 178 (192)
T ss_dssp HHHTTTEEEEEE
T ss_pred HHHHcCCeEEEe
Confidence 999999987655
No 251
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=60.09 E-value=21 Score=35.33 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHhhCCCccEEEEccC-----CCC-CHHHHHHHHHhhcCCCCceEE--EEecCCChHHHHHHHhCCCCEEE
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEVM-----PCL-SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDlM-----P~m-dGleLL~~Ir~~~~~p~iPVI--vmTa~~d~~~av~Am~aGA~DYL 96 (687)
.+..+.++.+.+ ...|+|=+|+| |.+ .|+++++.||+. .+.|+. +|+. +....+..|+++||+.+.
T Consensus 17 ~~l~~~i~~~~~--~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~---~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~ 90 (230)
T 1tqj_A 17 SRLGEEIKAVDE--AGADWIHVDVMDGRFVPNITIGPLIVDAIRPL---TKKTLDVHLMIV-EPEKYVEDFAKAGADIIS 90 (230)
T ss_dssp GGHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG---CCSEEEEEEESS-SGGGTHHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHH--cCCCEEEEEEEecCCCcchhhhHHHHHHHHhh---cCCcEEEEEEcc-CHHHHHHHHHHcCCCEEE
Confidence 356677777776 56787766663 333 478999999976 255665 7774 334567888999999886
Q ss_pred eCCC--CHHHHHHHHHHH
Q 005631 97 VKPI--RKNELKNLWQHV 112 (687)
Q Consensus 97 ~KP~--~~eeL~~~L~~a 112 (687)
+-.. ..+++...++.+
T Consensus 91 vh~e~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 91 VHVEHNASPHLHRTLCQI 108 (230)
T ss_dssp EECSTTTCTTHHHHHHHH
T ss_pred ECcccccchhHHHHHHHH
Confidence 6655 444555555444
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.99 E-value=2.9 Score=38.33 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=17.1
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|.+|+||+++|+.|-.
T Consensus 7 i~l-~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 7 IFL-VGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp EEE-ECCTTSCHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 555 79999999999999854
No 253
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=59.84 E-value=41 Score=35.79 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEEccCC------------CCCHHHHHHHHHhhcCCCCceEEE
Q 005631 8 LLLLCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRKNLPVIM 74 (687)
Q Consensus 8 ll~~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDlMP------------~mdGleLL~~Ir~~~~~p~iPVIv 74 (687)
.++.+.+..+..++ ..+.+.++|..+++ ...|.|.+-+-| +...++++..+.+......+|||.
T Consensus 136 ~i~~i~~~~~~~Vivg~v~t~e~A~~l~~---aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA 212 (361)
T 3khj_A 136 TLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 212 (361)
T ss_dssp HHHHHHHHCCCEEEEEEECSHHHHHHHHH---TTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCcEEEccCCCHHHHHHHHH---cCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEE
Confidence 34444444466654 37888888877765 468988873211 123455666664321113689998
Q ss_pred EecCCChHHHHHHHhCCCCEEEeC
Q 005631 75 MSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 75 mTa~~d~~~av~Am~aGA~DYL~K 98 (687)
--+-.+.+.+.+++.+||+...+=
T Consensus 213 ~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 213 DGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp ESCCCSHHHHHHHHHHTCSEEEES
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 888888999999999999987653
No 254
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=59.82 E-value=19 Score=34.95 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=51.3
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCC--------CHHHHHHHHHhhcCC-CCceEEEEecCCChHHHHHHH
Q 005631 19 KVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCL--------SGVALLSKIMSHKTR-KNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 19 ~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~m--------dGleLL~~Ir~~~~~-p~iPVIvmTa~~d~~~av~Am 88 (687)
.+...+.+.+|+.+.. . ..|.|+++. .|.. -|++++++++.. . ..+|||.+-+-. .+.+.+++
T Consensus 90 ~ig~s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~--~~~~iPviaiGGI~-~~nv~~~~ 162 (210)
T 3ceu_A 90 HVSCSCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKA--KIIDSKVMALGGIN-EDNLLEIK 162 (210)
T ss_dssp EEEEEECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHT--TCSSTTEEEESSCC-TTTHHHHH
T ss_pred EEEEecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHh--cCCCCCEEEECCCC-HHHHHHHH
Confidence 3345678888876654 3 489999887 6532 378888888764 2 478999887665 78889999
Q ss_pred hCCCCEEEe
Q 005631 89 SKGAVDFLV 97 (687)
Q Consensus 89 ~aGA~DYL~ 97 (687)
+.||+.+-+
T Consensus 163 ~~Ga~gVav 171 (210)
T 3ceu_A 163 DFGFGGAVV 171 (210)
T ss_dssp HTTCSEEEE
T ss_pred HhCCCEEEE
Confidence 999998743
No 255
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=59.54 E-value=9.8 Score=40.02 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCceEEEEecCCC--hHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 68 KNLPVIMMSSLDS--MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 68 p~iPVIvmTa~~d--~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
..+|+||+|.... .+.+..|-+.|.. .|.-+....++...|...+...
T Consensus 79 ~~~P~IIltrg~~~peelie~A~~~~IP-VL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEELIEAAKEHETP-LITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp TTCCCEEECTTCCCCHHHHHHHHHTTCC-EEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHCCCe-EEEECCchhHHHHHHHHHHHHh
Confidence 5799999988643 4556666666665 4555677788888887776554
No 256
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=59.39 E-value=32 Score=33.78 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhhCCCccEEE-Ecc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC--
Q 005631 26 NGLQAWKILEDLTNHIDLVL-TEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK-- 98 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVL-lDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K-- 98 (687)
+..+.++.+.+ ..++.|+ +++ -.+ .. .++++++|++. ..+|||...+-.+.+.+.++++.||+.+++=
T Consensus 152 ~~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsa 226 (253)
T 1thf_D 152 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASV 226 (253)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHH
Confidence 35566666666 5677554 554 211 12 48899999875 4799999999888999999999999988763
Q ss_pred ----CCCHHHHHHHH
Q 005631 99 ----PIRKNELKNLW 109 (687)
Q Consensus 99 ----P~~~eeL~~~L 109 (687)
|+++.+++..+
T Consensus 227 l~~~~~~~~~~~~~l 241 (253)
T 1thf_D 227 FHFREIDVRELKEYL 241 (253)
T ss_dssp HHTTCSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 45665555443
No 257
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=59.13 E-value=17 Score=36.37 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhh-CCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDL-TNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 90 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~-~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a 90 (687)
++...+.-.|....+.++|+.+.+.. ...+++|=+. |-.-++++.++.|++. ++. .+|-.-.--+.+.+.+++++
T Consensus 9 ~~~~~~vi~Vir~~~~~~a~~~a~al~~gGi~~iEvt-~~t~~a~~~I~~l~~~--~p~-~~IGAGTVlt~~~a~~ai~A 84 (217)
T 3lab_A 9 LANTKPLIPVIVIDDLVHAIPMAKALVAGGVHLLEVT-LRTEAGLAAISAIKKA--VPE-AIVGAGTVCTADDFQKAIDA 84 (217)
T ss_dssp HTTSCSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEE-TTSTTHHHHHHHHHHH--CTT-SEEEEECCCSHHHHHHHHHH
T ss_pred HHhhCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-CCCccHHHHHHHHHHH--CCC-CeEeeccccCHHHHHHHHHc
Confidence 34455665577788888887776531 0345544333 5555799999999987 566 35544445579999999999
Q ss_pred CCCEEEeCCCCHHHHH
Q 005631 91 GAVDFLVKPIRKNELK 106 (687)
Q Consensus 91 GA~DYL~KP~~~eeL~ 106 (687)
||. ||+-|....++.
T Consensus 85 GA~-fivsP~~~~evi 99 (217)
T 3lab_A 85 GAQ-FIVSPGLTPELI 99 (217)
T ss_dssp TCS-EEEESSCCHHHH
T ss_pred CCC-EEEeCCCcHHHH
Confidence 995 666675444443
No 258
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.72 E-value=3.7 Score=39.07 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=19.1
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhc
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
....|.| .|++|+||+++|++|-..
T Consensus 24 ~g~~i~l-~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWV-TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEE-ECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHH
Confidence 3344555 799999999999998543
No 259
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=58.59 E-value=34 Score=33.35 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhhCCCccEE-EEcc-CCCC---CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhC---CCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLV-LTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK---GAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLV-LlDl-MP~m---dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~a---GA~DYL~ 97 (687)
+..+.++.+.+ ..++.| ++++ ..+. -.++++++|++. ..+|||...+-.+.+.+.++++. ||+.+++
T Consensus 150 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 150 DLWDVLERLDS--EGCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EHHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 44666666666 567755 4665 3322 257899999865 58999999998899999999998 9988765
Q ss_pred ------CCCCHHHHHHH
Q 005631 98 ------KPIRKNELKNL 108 (687)
Q Consensus 98 ------KP~~~eeL~~~ 108 (687)
.|+.+.+++..
T Consensus 225 G~al~~~~~~~~~~~~~ 241 (244)
T 2y88_A 225 GKALYARRFTLPQALAA 241 (244)
T ss_dssp CHHHHTTSSCHHHHHHH
T ss_pred cHHHHCCCcCHHHHHHH
Confidence 46665555443
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=57.82 E-value=4.9 Score=47.54 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.+..||+ .|+.||||.++|+||-..+. -+|+.|.
T Consensus 510 ~~~gvLl-~GPPGtGKT~lAkaiA~e~~---~~f~~v~ 543 (806)
T 3cf2_A 510 PSKGVLF-YGPPGCGKTLLAKAIANECQ---ANFISIK 543 (806)
T ss_dssp CCSCCEE-ESSTTSSHHHHHHHHHHTTT---CEEEECC
T ss_pred CCceEEE-ecCCCCCchHHHHHHHHHhC---CceEEec
Confidence 3444888 89999999999999987765 5899998
No 261
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=57.06 E-value=3.5 Score=40.74 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=19.2
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
+....-|-| +|++|+||+++++.|-.
T Consensus 22 i~~g~iigI-~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGV-SGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEE-ECCCCCCHHHHHHHHHH
Confidence 344434556 89999999999999844
No 262
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=56.62 E-value=11 Score=35.93 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCC--CCHHHHHHHHHhhcCCCCceEEE--EecCCChH-HHHHHHhCCCCEEEeC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIM--MSSLDSMG-LVFKCLSKGAVDFLVK 98 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~--mdGleLL~~Ir~~~~~p~iPVIv--mTa~~d~~-~av~Am~aGA~DYL~K 98 (687)
.+.+++++.++.....+| ++++ +|- ..|.++++.|++. .++.||++ +.. +-.+ .+..+.++||+...+-
T Consensus 10 ~~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~--~~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh 84 (207)
T 3ajx_A 10 LSTEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKA--HPDKIVFADMKTM-DAGELEADIAFKAGADLVTVL 84 (207)
T ss_dssp SCHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHH--STTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHh--CCCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEe
Confidence 578899999887322224 3677 552 4678899999977 45788874 543 2134 4788899999988777
Q ss_pred CCCH-HHHHHHH
Q 005631 99 PIRK-NELKNLW 109 (687)
Q Consensus 99 P~~~-eeL~~~L 109 (687)
+... +.+...+
T Consensus 85 ~~~~~~~~~~~~ 96 (207)
T 3ajx_A 85 GSADDSTIAGAV 96 (207)
T ss_dssp TTSCHHHHHHHH
T ss_pred ccCChHHHHHHH
Confidence 7544 4444333
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=55.84 E-value=3.8 Score=37.17 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=22.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| +|.+|+||+++|+.+-.. -+-+||..+
T Consensus 4 i~l-~G~~GsGKsT~~~~L~~~---l~~~~i~~d 33 (173)
T 3kb2_A 4 IIL-EGPDCCFKSTVAAKLSKE---LKYPIIKGS 33 (173)
T ss_dssp EEE-ECSSSSSHHHHHHHHHHH---HCCCEEECC
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---hCCeeecCc
Confidence 444 899999999999998533 345677655
No 264
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.77 E-value=3.2 Score=42.72 Aligned_cols=45 Identities=11% Similarity=-0.083 Sum_probs=0.0
Q ss_pred ccCCCCCCCcccccchhhhh-hhcCCCCccccCCCCCCCChhHHHHHhh
Q 005631 160 NGGDGSDDGSGTQSSWTKKA-VEVDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 160 ~~~D~sG~G~~aqS~~~k~~-~ea~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
...+++|+.... ..+...+ ..-+.+. +++ .|++||||.++|++|.
T Consensus 12 ~~~~~vg~~~~~-~~l~~~~~~~~~~~~-~ll-~Gp~G~GKTtl~~~la 57 (354)
T 1sxj_E 12 SLNALSHNEELT-NFLKSLSDQPRDLPH-LLL-YGPNGTGKKTRCMALL 57 (354)
T ss_dssp SGGGCCSCHHHH-HHHHTTTTCTTCCCC-EEE-ECSTTSSHHHHHHTHH
T ss_pred CHHHhcCCHHHH-HHHHHHHhhCCCCCe-EEE-ECCCCCCHHHHHHHHH
No 265
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.64 E-value=3.9 Score=52.14 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=41.8
Q ss_pred CCCccccCCCCCCCChhHHHHHhhhcCcccCCCceecCChhhhhhhhhhhhhhhccCCccc
Q 005631 184 SPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLD 244 (687)
Q Consensus 184 S~~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn~~~~C~aipe~L~ESelFGh~l~ 244 (687)
...+||+ .|+.||||.++|.++=..+...+.|.|-|+ +...++.+.. +-||-|+.
T Consensus 1081 ~g~~~l~-~G~~g~GKT~la~~~~~~~~~~g~~~~fi~----~~~~~~~~~~-~~~G~d~~ 1135 (1706)
T 3cmw_A 1081 MGRIVEI-YGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIYA-RKLGVDID 1135 (1706)
T ss_dssp TTSEEEE-ECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHHH-HHTTCCGG
T ss_pred CCCEEEE-EcCCCCChHHHHHHHHHHhhhcCCceeEEE----cccchHHHHH-HHhCCCHH
Confidence 3445888 899999999999998888888788855555 5555556665 56788886
No 266
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=55.62 E-value=67 Score=35.43 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=59.3
Q ss_pred HHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHhhCCCccEEEEcc---------------CCCCCHHHHHHHHHhhcCCCC
Q 005631 7 MLLLLCFEIA-VMKVI-TEATNGLQAWKILEDLTNHIDLVLTEV---------------MPCLSGVALLSKIMSHKTRKN 69 (687)
Q Consensus 7 ~ll~~lLe~~-G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDl---------------MP~mdGleLL~~Ir~~~~~p~ 69 (687)
.+++.+.+.. ++.++ ..+.+.++|..+++. ..|.|.+-. +|....+.++.+++.. ..
T Consensus 285 ~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~---~~ 358 (514)
T 1jcn_A 285 AMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR---FG 358 (514)
T ss_dssp HHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG---GT
T ss_pred HHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh---CC
Confidence 4455555554 56544 257888888877765 588777632 2223346777777765 37
Q ss_pred ceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 70 LPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 70 iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+|||..-+-.+...+.+++.+||+....
T Consensus 359 ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 9999988888999999999999887654
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.14 E-value=3.9 Score=38.78 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=16.7
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|+| +|.+|+||+++|+.|-.
T Consensus 21 I~l-~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 21 IVV-MGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EEE-ECSTTSCHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 444 89999999999998843
No 268
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=54.80 E-value=18 Score=37.21 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=48.5
Q ss_pred CCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCH--HHHHHHHHHHHHHH
Q 005631 39 NHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK--NELKNLWQHVWRRC 116 (687)
Q Consensus 39 ~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~--eeL~~~L~~alr~~ 116 (687)
.++|+||+|+.|. +|...+.+.|... -.+.+.+.++-|...|++|=|.. +++...++.+-+.+
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F 202 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRF 202 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHc
Confidence 5789999999665 8888888887662 35677788888878999999987 77777666554444
No 269
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=54.11 E-value=4.1 Score=37.65 Aligned_cols=30 Identities=10% Similarity=-0.114 Sum_probs=21.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||.++|+.|-. +-+-+||..+
T Consensus 7 i~i-~G~~GsGKsTla~~La~---~l~~~~~d~d 36 (175)
T 1via_A 7 IVF-IGFMGSGKSTLARALAK---DLDLVFLDSD 36 (175)
T ss_dssp EEE-ECCTTSCHHHHHHHHHH---HHTCEEEEHH
T ss_pred EEE-EcCCCCCHHHHHHHHHH---HcCCCEEccc
Confidence 555 79999999999999843 3334565543
No 270
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=54.10 E-value=72 Score=34.04 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHHhC-CCeE-EEEeCCHHHHHHHHHhhCCCccEEEEccCC------------CCCHHHHHHHHHhhcCCCCceEEE
Q 005631 9 LLLCFEIA-VMKV-ITEATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRKNLPVIM 74 (687)
Q Consensus 9 l~~lLe~~-G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDlMP------------~mdGleLL~~Ir~~~~~p~iPVIv 74 (687)
++.+.+.. +..+ +..+.+.++|.++++. ..|.|.+-+-| +...++++..+.+......+|||.
T Consensus 140 I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA 216 (366)
T 4fo4_A 140 IRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIA 216 (366)
T ss_dssp HHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred HHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEE
Confidence 33444443 5553 3458899999888765 68988883211 123456666665421124799998
Q ss_pred EecCCChHHHHHHHhCCCCEEEeC
Q 005631 75 MSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 75 mTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.-+-.+...+.+++.+||+....=
T Consensus 217 ~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 217 DGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEES
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEC
Confidence 888888999999999999887653
No 271
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=53.78 E-value=23 Score=33.91 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHhhCCCccEEEEccCCC--CCHHHHHHHHHhhcCCCCceEEE--EecCCChHHHHHHHhCCCCEEEeCCC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSHKTRKNLPVIM--MSSLDSMGLVFKCLSKGAVDFLVKPI 100 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDlMP~--mdGleLL~~Ir~~~~~p~iPVIv--mTa~~d~~~av~Am~aGA~DYL~KP~ 100 (687)
.+.+++++.++.....+|+|-+- +|- ..|+++++.||+. .+++||.+ ++.......+..+.++||+-+++-..
T Consensus 10 ~~~~~~~~~~~~~~~~~diie~G-~p~~~~~g~~~i~~ir~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVDDVDIIEVG-TPFLIREGVNAIKAIKEK--YPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CCHHHHHHHHHHHGGGCSEEEEC-HHHHHHHTTHHHHHHHHH--CTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CCHHHHHHHHHHhhcCccEEEeC-cHHHHhccHHHHHHHHHh--CCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 46888998888643345644332 443 4588999999986 46788753 33333333488999999988887444
Q ss_pred CH-HHHHHHHH
Q 005631 101 RK-NELKNLWQ 110 (687)
Q Consensus 101 ~~-eeL~~~L~ 110 (687)
.. +.+...++
T Consensus 87 ~~~~~~~~~~~ 97 (211)
T 3f4w_A 87 TDVLTIQSCIR 97 (211)
T ss_dssp SCHHHHHHHHH
T ss_pred CChhHHHHHHH
Confidence 33 33444443
No 272
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=53.70 E-value=19 Score=36.62 Aligned_cols=62 Identities=11% Similarity=0.267 Sum_probs=49.3
Q ss_pred HhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCH
Q 005631 35 EDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK 102 (687)
Q Consensus 35 ~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~ 102 (687)
.+ +.||+||+=- -|..-|-.-.+.+... .++|.|+|+...... +.++|+..-++||.-+.++
T Consensus 61 ~~--~~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~Dp 123 (283)
T 1qv9_A 61 ED--FEPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPDA 123 (283)
T ss_dssp HH--HCCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTSC
T ss_pred hh--cCCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecCc
Confidence 56 7899999866 7888898888877755 689999999866555 6789988888998776543
No 273
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=53.54 E-value=29 Score=34.46 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhhCCCcc-EEEEcc-CCCC---CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 25 TNGLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pD-LVLlDl-MP~m---dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
.+..+..+.+.+ ...| |.|.|. ..+. .-+++++.|++. ..+|||+..+..+.+.+.+++..||+..++=-
T Consensus 30 ~~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 30 ILLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EEHHHHHHHHHH--HTCSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CCHHHHHHHHHH--CCCCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 356666666665 4565 555676 4322 127888888865 58999999888889999999999999887743
No 274
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.52 E-value=2.7 Score=42.31 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=24.2
Q ss_pred cccCCCCCCCChhHHHHHhhhc--CcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN--AEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~--S~R~~~pFV~vn 221 (687)
+++ +|+.||||.++|+++... .+....+|+.++
T Consensus 45 ~ll-~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 45 MII-SGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred EEE-ECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 777 899999999999999765 222233567777
No 275
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=53.49 E-value=6.2 Score=43.46 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=26.3
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+|+ .|++||||.++|++|-..- +-+|+.++
T Consensus 51 ~~iLl-~GppGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 51 KNILM-IGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred ceEEE-EcCCCCCHHHHHHHHHHHc---CCCceeec
Confidence 34777 7999999999999986543 56999998
No 276
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=53.28 E-value=28 Score=33.44 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=48.1
Q ss_pred HhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCceEEEEecCCCh
Q 005631 14 EIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMMSSLDSM 81 (687)
Q Consensus 14 e~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-------leLL~~Ir~~~--~~p~iPVIvmTa~~d~ 81 (687)
+..|..+...+ .+..++++.+. ...|.|+++. .|+.+| ++.++++++.. ....+||++.-+-. .
T Consensus 106 ~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~ 181 (220)
T 2fli_A 106 KAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-N 181 (220)
T ss_dssp HHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-T
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-H
Confidence 33466544444 34455555443 3489999987 776554 34455565531 01257776654444 6
Q ss_pred HHHHHHHhCCCCEEEe
Q 005631 82 GLVFKCLSKGAVDFLV 97 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~ 97 (687)
+.+.+++++||+.+++
T Consensus 182 ~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 182 KTIRACYEAGANVFVA 197 (220)
T ss_dssp TTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 7777888889988765
No 277
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=52.92 E-value=98 Score=31.64 Aligned_cols=92 Identities=15% Similarity=0.048 Sum_probs=59.4
Q ss_pred HHHHHHHhCCCeEEEEeC--CHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHH
Q 005631 8 LLLLCFEIAVMKVITEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 85 (687)
Q Consensus 8 ll~~lLe~~G~~~V~~A~--sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av 85 (687)
.+..+.+..+ .++.... +.++..+++.. .|++|+=..-+.-|+.+++.+. ..+|||.- .. ....
T Consensus 301 ~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~e~~~~~~~EAma-----~G~Pvi~s-~~---~~~~ 366 (439)
T 3fro_A 301 WARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYFEPFGLVALEAMC-----LGAIPIAS-AV---GGLR 366 (439)
T ss_dssp HHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSCCSSCHHHHHHHH-----TTCEEEEE-SS---THHH
T ss_pred HHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCCCCccHHHHHHHH-----CCCCeEEc-CC---CCcc
Confidence 3444445555 4333333 55556666644 6777664433556777887775 35787763 32 3444
Q ss_pred HHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 86 KCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 86 ~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
+.+..| ..++..|.+.++|...|.+++.
T Consensus 367 e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 367 DIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp HHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 555567 9999999999999999998887
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.56 E-value=5.7 Score=36.90 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=22.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+.| .|++|+||+++++.|-.. .+.++|.++
T Consensus 12 i~l-~G~~GsGKSTl~~~La~~---~~~g~i~i~ 41 (191)
T 1zp6_A 12 LLL-SGHPGSGKSTIAEALANL---PGVPKVHFH 41 (191)
T ss_dssp EEE-EECTTSCHHHHHHHHHTC---SSSCEEEEC
T ss_pred EEE-ECCCCCCHHHHHHHHHhc---cCCCeEEEc
Confidence 555 799999999999999543 344566665
No 279
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=52.48 E-value=60 Score=28.94 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=39.4
Q ss_pred CccEEEEcc---CCCCC----------------HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 40 HIDLVLTEV---MPCLS----------------GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 40 ~pDLVLlDl---MP~md----------------GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
.+.+|++|+ +-..+ -.++++++++. .++++++|+.........+-+.|..+|+..+
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 378899998 32211 23788888754 6899999998766555555578998888654
No 280
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=52.42 E-value=5.1 Score=38.35 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=18.8
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
.+.....+.| .|++|+||++++++|--
T Consensus 16 ~i~~Gei~~l-~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 16 PAAVGRVVVL-SGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp ---CCCEEEE-ECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEE-ECCCCCCHHHHHHHHHh
Confidence 4444445555 59999999999999843
No 281
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=52.41 E-value=32 Score=36.81 Aligned_cols=65 Identities=15% Similarity=-0.012 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCCCCH-HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+.++.+.+ ..+|+|.+|. ...... ++++++|++. ++.+|||+= .-.+.+.+..++++||+-..+
T Consensus 102 ~e~~~~a~~--aGvdvI~id~a~G~~~~~~e~I~~ir~~--~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRD--AGADFFCVDVAHAHAKYVGKTLKSLRQL--LGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHH--TTCCEEEEECSCCSSHHHHHHHHHHHHH--HTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcHhHHHHHHHHHHh--cCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 445555556 5799999998 643322 5788899876 467888861 124678999999999988776
No 282
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=52.19 E-value=1.7e+02 Score=29.86 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC--CC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP--IR 101 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP--~~ 101 (687)
.+..+.++.+.. ..+|.|++|+ =...+--.+...++... ....+++|=+...+...+..+++.|++..++ | -+
T Consensus 47 ~~~p~~~e~a~~--~GaD~v~lDlEh~~~~~~~~~~~l~a~~-~~~~~~~VRv~~~d~~di~~~ld~ga~~Iml-P~V~s 122 (287)
T 2v5j_A 47 LSSSYSAELLAG--AGFDWLLIDGEHAPNNVQTVLTQLQAIA-PYPSQPVVRPSWNDPVQIKQLLDVGTQTLLV-PMVQN 122 (287)
T ss_dssp SCCHHHHHHHHT--SCCSEEEEESSSSSCCHHHHHHHHHHHT-TSSSEEEEECSSSCHHHHHHHHHTTCCEEEE-SCCCS
T ss_pred CCCHHHHHHHHh--CCCCEEEEeCCCccchHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHHHHhCCCCEEEe-CCCCC
Confidence 344455666666 6899999999 33344444555555443 2367788878777888899999999975443 5 36
Q ss_pred HHHHHHHHH
Q 005631 102 KNELKNLWQ 110 (687)
Q Consensus 102 ~eeL~~~L~ 110 (687)
.++++.++.
T Consensus 123 aeea~~~~~ 131 (287)
T 2v5j_A 123 ADEAREAVR 131 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788765554
No 283
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.18 E-value=4 Score=37.83 Aligned_cols=21 Identities=10% Similarity=-0.141 Sum_probs=17.6
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
++| .|++|+||+++.+||...
T Consensus 29 ~~i-~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 29 TAI-VGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEE-EECTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 344 699999999999999753
No 284
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=51.71 E-value=5.3 Score=38.96 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=23.6
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.||| +|+||+||+++|-++... +..||+-|
T Consensus 18 gvli-~G~SGaGKStlal~L~~r----G~~lvaDD 47 (181)
T 3tqf_A 18 GVLI-TGEANIGKSELSLALIDR----GHQLVCDD 47 (181)
T ss_dssp EEEE-EESSSSSHHHHHHHHHHT----TCEEEESS
T ss_pred EEEE-EcCCCCCHHHHHHHHHHc----CCeEecCC
Confidence 4778 899999999999888763 44677754
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=50.97 E-value=5.8 Score=36.70 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=22.1
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.|+| +|.+|+||.++|+.+-.. .+-+|+.++
T Consensus 13 ~i~i-~G~~GsGKst~~~~l~~~---~~~~~~~~d 43 (180)
T 3iij_A 13 NILL-TGTPGVGKTTLGKELASK---SGLKYINVG 43 (180)
T ss_dssp CEEE-ECSTTSSHHHHHHHHHHH---HCCEEEEHH
T ss_pred eEEE-EeCCCCCHHHHHHHHHHH---hCCeEEEHH
Confidence 3666 899999999999998532 234555544
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.46 E-value=5.2 Score=37.13 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=21.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| +|.+|+||+++|+.|-. +.+-+||..+
T Consensus 5 I~l-~G~~GsGKsT~a~~La~---~lg~~~id~D 34 (184)
T 2iyv_A 5 AVL-VGLPGSGKSTIGRRLAK---ALGVGLLDTD 34 (184)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH---HHTCCEEEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH---HcCCCEEeCc
Confidence 445 89999999999999843 3344666544
No 287
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=50.36 E-value=5.1 Score=38.37 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.6
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|.| +|.+|+||+++|+.|-
T Consensus 8 i~i-~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 8 ITI-DGPSGAGKGTLCKAMA 26 (227)
T ss_dssp EEE-ECCTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 455 8999999999999995
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=50.32 E-value=5.2 Score=36.80 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
+.| +|.+|+||+++|+.|-.
T Consensus 11 i~l-~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 11 YVL-MGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEE-ECSTTSCHHHHHHHHHH
T ss_pred EEE-EcCCCCCHHHHHHHHHH
Confidence 445 79999999999999854
No 289
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=50.32 E-value=2e+02 Score=28.94 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC--CC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP--IR 101 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP--~~ 101 (687)
...+.++.+.. ..+|.|++|+ -| .+--++...++... ....+++|=+...+...+..+++.|++.. .=| -+
T Consensus 27 ~~p~~~e~a~~--~GaD~v~lDlE~~~-~~~~~~~~~~~a~~-~~~~~~~VRv~~~~~~~i~~~l~~g~~~I-~~P~V~s 101 (267)
T 2vws_A 27 TTAYMAEIAAT--SGYDWLLIDGEHAP-NTIQDLYHQLQAVA-PYASQPVIRPVEGSKPLIKQVLDIGAQTL-LIPMVDT 101 (267)
T ss_dssp CCHHHHHHHHT--TCCSEEEEETTTSC-CCHHHHHHHHHHHT-TSSSEEEEECSSCCHHHHHHHHHTTCCEE-EECCCCS
T ss_pred CCHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHhCCCEE-EeCCCCC
Confidence 34455666666 6899999999 44 34445555555543 23567777777778888999999998754 335 36
Q ss_pred HHHHHHHHH
Q 005631 102 KNELKNLWQ 110 (687)
Q Consensus 102 ~eeL~~~L~ 110 (687)
.++++..+.
T Consensus 102 ~ee~~~~~~ 110 (267)
T 2vws_A 102 AEQARQVVS 110 (267)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788766554
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.30 E-value=5.7 Score=37.69 Aligned_cols=31 Identities=3% Similarity=-0.045 Sum_probs=23.0
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.|+| .|.+|+||.++|++|-. +-+-+||..+
T Consensus 27 ~i~l-~G~~GsGKsTl~~~La~---~l~~~~i~~d 57 (199)
T 3vaa_A 27 RIFL-TGYMGAGKTTLGKAFAR---KLNVPFIDLD 57 (199)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHH---HHTCCEEEHH
T ss_pred EEEE-EcCCCCCHHHHHHHHHH---HcCCCEEcch
Confidence 3555 79999999999999853 2345677655
No 291
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=50.00 E-value=6.1 Score=37.06 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=17.8
Q ss_pred ccccCCCCCCCChhHHHHHhhhc
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
.+.| .|.+|+||+++++.|-..
T Consensus 8 ~i~l-~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVL-SGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEE-ECSTTSCHHHHHHHHHHC
T ss_pred EEEE-ECCCCCCHHHHHHHHHHh
Confidence 3455 799999999999998544
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.63 E-value=5.4 Score=36.40 Aligned_cols=20 Identities=15% Similarity=-0.026 Sum_probs=17.4
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|++ .|.+|+||+++|+.|..
T Consensus 5 I~i-~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILT-IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEE-ECCTTSSHHHHHHHHHH
T ss_pred EEE-ecCCCCCHHHHHHHHHh
Confidence 445 89999999999999976
No 293
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=49.57 E-value=3.6 Score=43.33 Aligned_cols=55 Identities=4% Similarity=-0.079 Sum_probs=34.8
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCc----cc---CCCceecCChhhhhhhhh------hhhhhhccCCcc
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAE----IT---GSRRVPVTAAKECQDHEE------RCENFAKRSRDL 243 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~----R~---~~pFV~vn~~~~C~aipe------~L~ESelFGh~l 243 (687)
..+..|+| +|++||||.+++++|=..-. .. .-.||.|| |..+.. .|.+ .|+|+.+
T Consensus 43 ~~~~~lli-~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~~~~I~~-~L~g~~~ 110 (318)
T 3te6_A 43 SQNKLFYI-TNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDALYEKIWF-AISKENL 110 (318)
T ss_dssp TCCCEEEE-ECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHHHHHHHH-HHSCCC-
T ss_pred CCCCeEEE-ECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHHHHHHHH-HhcCCCC
Confidence 45555888 89999999999988743322 11 12578899 876543 2333 4557754
No 294
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=49.09 E-value=1.2e+02 Score=31.56 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=58.5
Q ss_pred HHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 6 AMLLLLCFEI--AVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 6 r~ll~~lLe~--~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
+.+...+... ..|+ |..+++.+.+.+.+++ ..+||+|+|- ++... ... .....|++++.....+
T Consensus 35 ~~l~~y~~~~~~~~~~-v~~ft~~e~~~~~~~~--~~~dilli~e~~~~~~--------~~~--~~~~~v~~l~~~~~~~ 101 (373)
T 3fkq_A 35 DRLTGVFNTKYADKLE-VYSFTDEKNAIESVKE--YRIDVLIAEEDFNIDK--------SEF--KRNCGLAYFTGTPGIE 101 (373)
T ss_dssp HHHHHHHHHHTTTTEE-EEEESCHHHHHHHHHH--HTCSEEEEETTCCCCG--------GGG--CSSCEEEEEESCTTCC
T ss_pred HHHHHHHhhccCCceE-EEEECCHHHHHHHHhc--CCCCEEEEcchhhhhh--------hhh--cccCcEEEEECCCCCC
Confidence 3444444443 4576 7899999999999998 7999999998 75521 112 1346677776643222
Q ss_pred HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aGA~DYL~KP~~~eeL~~~L~~al 113 (687)
...-...+.|--+.++|...|..++
T Consensus 102 ------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 102 ------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp ------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred ------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 1123357888888888877766554
No 295
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=48.97 E-value=5 Score=36.96 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=22.9
Q ss_pred CccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
..+.| .|++|+||.+++++|-..-...+...+-++
T Consensus 37 ~~~~l-~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 37 QFIYV-WGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SEEEE-ESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 34666 799999999999998543322233344444
No 296
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=48.69 E-value=86 Score=30.57 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhhCCCccEE-EEcc-CCCC---CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 25 TNGLQAWKILEDLTNHIDLV-LTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLV-LlDl-MP~m---dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+..+..+.+.+ ...|.| +.|. .... ..+++++.|++. ..+|||+.-.-.+.+.+.+++..||+..++
T Consensus 30 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 30 GDPVELGKFYSE--IGIDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp TCHHHHHHHHHH--TTCCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHH--cCCCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 466666677766 567754 4444 2222 135666777754 579999998888999999999999887765
No 297
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=48.37 E-value=2.2e+02 Score=29.49 Aligned_cols=69 Identities=22% Similarity=0.024 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc----------------------CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV----------------------MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl----------------------MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
.+.++|..... ...|.|++.. ..+...++.+..+++. .+.+|||...+-.+.+
T Consensus 190 ~~~~~a~~a~~---~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~--~~~ipvia~GGI~~~~ 264 (349)
T 1p0k_A 190 MSKASAGKLYE---AGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSE--FPASTMIASGGLQDAL 264 (349)
T ss_dssp CCHHHHHHHHH---HTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHH--CTTSEEEEESSCCSHH
T ss_pred CCHHHHHHHHH---cCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHh--cCCCeEEEECCCCCHH
Confidence 56677665554 3688777731 1124567788888765 3589999999999999
Q ss_pred HHHHHHhCCCCEEEeC
Q 005631 83 LVFKCLSKGAVDFLVK 98 (687)
Q Consensus 83 ~av~Am~aGA~DYL~K 98 (687)
.+.+++.+||+.+++=
T Consensus 265 d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 265 DVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999988764
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.36 E-value=5.3 Score=37.53 Aligned_cols=21 Identities=0% Similarity=-0.018 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.| .|++|+||+++++.|-..
T Consensus 10 i~l-~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FII-SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHH
T ss_pred EEE-ECcCCCCHHHHHHHHHhh
Confidence 344 799999999999998543
No 299
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=48.20 E-value=6.7 Score=38.16 Aligned_cols=34 Identities=9% Similarity=-0.139 Sum_probs=18.8
Q ss_pred cchhhhhhhcCCCCccccCCCCCCCChhHHHHHhh
Q 005631 173 SSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 173 S~~~k~~~ea~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
|++...-+.+.....+.| .|++|+||.++++.|=
T Consensus 11 ~~l~~isl~i~~G~~~~l-vGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVI-CGPSGVGKGTLIKKLL 44 (218)
T ss_dssp -----------CCCCEEE-ECSTTSSHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEE-ECCCCCCHHHHHHHHH
Confidence 344444455555555666 6999999999999884
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=47.93 E-value=6 Score=36.65 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=22.8
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ .|.+|+||.++|+.+-. +-+-+||..+
T Consensus 8 i~l-~G~~GsGKst~a~~La~---~l~~~~i~~d 37 (185)
T 3trf_A 8 IYL-IGLMGAGKTSVGSQLAK---LTKRILYDSD 37 (185)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH---HHCCCEEEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH---HhCCCEEECh
Confidence 455 79999999999999853 3355777655
No 301
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=47.80 E-value=6.1 Score=36.13 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=22.5
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++| +|..|+||+++|+.+-. +-+-|||-.+
T Consensus 9 ~i~l-~G~~GsGKSTva~~La~---~lg~~~id~D 39 (168)
T 1zuh_A 9 HLVL-IGFMGSGKSSLAQELGL---ALKLEVLDTD 39 (168)
T ss_dssp EEEE-ESCTTSSHHHHHHHHHH---HHTCCEEEHH
T ss_pred eEEE-ECCCCCCHHHHHHHHHH---HhCCCEEECh
Confidence 3566 89999999999999843 2334666544
No 302
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=47.15 E-value=1.5e+02 Score=30.85 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=58.2
Q ss_pred HHHHHHHhC-CCeEEEE-eCCHHHHHHHHHhhCCCccEEEEccCCC------------CC--HHHHHHHHHhhcCCCCce
Q 005631 8 LLLLCFEIA-VMKVITE-ATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS--GVALLSKIMSHKTRKNLP 71 (687)
Q Consensus 8 ll~~lLe~~-G~~~V~~-A~sg~eALe~L~~~~~~pDLVLlDlMP~------------md--GleLL~~Ir~~~~~p~iP 71 (687)
+++.+.+.. +.-++.- +.+.++|...++. ..|.|++-.-++ .. .++++.+++.. -.+|
T Consensus 139 ~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~---~~ip 212 (336)
T 1ypf_A 139 MIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA---ASKP 212 (336)
T ss_dssp HHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHT---CSSC
T ss_pred HHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHH---cCCc
Confidence 444444443 3443333 6788888877765 688887722111 11 47788888765 3899
Q ss_pred EEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 72 VIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 72 VIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
||.-.+-.+...+.+|+.+||+....
T Consensus 213 VIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 213 IIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp EEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999988655
No 303
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=47.14 E-value=7 Score=40.55 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.9
Q ss_pred CccccCCCCCCCChhHHHHHhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH 207 (687)
..+++ .|++||||.++|++|=
T Consensus 52 ~~~ll-~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLL-AGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEE-ESSTTSSHHHHHHHHH
T ss_pred CeEEE-ECCCCCcHHHHHHHHH
Confidence 44666 7999999999999984
No 304
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=47.13 E-value=52 Score=36.36 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCC-HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~md-GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+..+.+.+ ..+|+|.+|. .+... -++++++|++. ++.+|||+- .-.+.+.+..++++||+...+
T Consensus 229 ~~~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~v~~i~~~--~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVA--AGVDVVVVDTAHGHSKGVIERVRWVKQT--FPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHH--TTCSEEEEECSCCSBHHHHHHHHHHHHH--CTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhh--cccceEEecccCCcchhHHHHHHHHHHH--CCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 44455555555 5799999999 76543 35789999887 578888873 245678999999999988875
No 305
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=47.12 E-value=36 Score=37.71 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCCCC-HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~md-GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+..+.+.+ ..+|+|.+|. .+... -++++++|++. ++.+|||+- .-.+.+.+..++++||+-+++
T Consensus 233 ~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~i~~ir~~--~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIGG-NVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHH--CTTCCEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--ccCceEEeccccccchHHHHHHHHHHHH--CCCceEEEc-ccCcHHHHHHHHHhCCCEEEE
Confidence 344444444 5799999999 87554 35789999987 578888872 345678899999999988875
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.96 E-value=6.2 Score=35.95 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=20.8
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
|+| +|.+|+||+++|+.+-.. .+-+||..
T Consensus 5 I~l-~G~~GsGKsT~a~~La~~---lg~~~id~ 33 (173)
T 1e6c_A 5 IFM-VGARGCGMTTVGRELARA---LGYEFVDT 33 (173)
T ss_dssp EEE-ESCTTSSHHHHHHHHHHH---HTCEEEEH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---hCCcEEcc
Confidence 455 899999999999998542 23355543
No 307
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=46.90 E-value=54 Score=31.58 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhhCCCcc-EEEEcc-CCCC---CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 25 TNGLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pD-LVLlDl-MP~m---dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+..+..+.+.+ ..+| |.+.|. .... ..+++++.|++. ..+|||+...-.+.+.+.++++.||+.+++
T Consensus 33 ~~~~~~a~~~~~--~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEE--EGADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHH--TTCSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 466677777776 6688 556665 4221 246788888866 479999988888899999999999877664
No 308
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=46.50 E-value=1.8e+02 Score=29.72 Aligned_cols=85 Identities=11% Similarity=-0.036 Sum_probs=62.1
Q ss_pred HHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCCCC-HHHHHHHHHhhcCCCCceEEEEecCCChHHHHH
Q 005631 10 LLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 86 (687)
Q Consensus 10 ~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~md-GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~ 86 (687)
..+....|.+++..+.+.+|+-..+.. .++||=+.- |-... .++...+|...- -.++.+|.-++-.+.+.+.+
T Consensus 146 ~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vdl~~t~~L~~~i-p~~~~~VsESGI~t~~dv~~ 221 (258)
T 4a29_A 146 LEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEINKENQRKLISMI-PSNVVKVAKLGISERNEIEE 221 (258)
T ss_dssp HHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBCHHHHHHHHTTS-CTTSEEEEEESSCCHHHHHH
T ss_pred HHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccCHHHHHHHHhhC-CCCCEEEEcCCCCCHHHHHH
Confidence 344567899999999999998777764 678886654 43322 345555565442 24666777788899999999
Q ss_pred HHhCCCCEEEeC
Q 005631 87 CLSKGAVDFLVK 98 (687)
Q Consensus 87 Am~aGA~DYL~K 98 (687)
....|++.||+-
T Consensus 222 l~~~G~~a~LVG 233 (258)
T 4a29_A 222 LRKLGVNAFLIS 233 (258)
T ss_dssp HHHTTCCEEEEC
T ss_pred HHHCCCCEEEEC
Confidence 999999999985
No 309
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=46.09 E-value=1.5e+02 Score=31.25 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=57.4
Q ss_pred HHHHHHhC-CCeE-EEEeCCHHHHHHHHHhhCCCccEEEEccCCC------------CCHHHHHHHHHhhcCCCCceEEE
Q 005631 9 LLLCFEIA-VMKV-ITEATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSGVALLSKIMSHKTRKNLPVIM 74 (687)
Q Consensus 9 l~~lLe~~-G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~------------mdGleLL~~Ir~~~~~p~iPVIv 74 (687)
++.+-+.. +..+ +..+.+.++|...++. ..|.|.+-.-|+ ..-+.++..+.+......+|||.
T Consensus 152 i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa 228 (351)
T 2c6q_A 152 VKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIIS 228 (351)
T ss_dssp HHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEE
Confidence 44443443 4443 3568889999877764 689886643221 22344555554331113699999
Q ss_pred EecCCChHHHHHHHhCCCCEEE-eCCC
Q 005631 75 MSSLDSMGLVFKCLSKGAVDFL-VKPI 100 (687)
Q Consensus 75 mTa~~d~~~av~Am~aGA~DYL-~KP~ 100 (687)
-.+-.+...+.+|+.+||+... -+||
T Consensus 229 ~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 229 DGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred eCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 8899999999999999998764 4555
No 310
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=45.99 E-value=49 Score=36.78 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHH-HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGl-eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.|.+ ..+|+|.+|. .+...++ +++++|++. ++.+|||+- .-.+.+.+..+.++||+.+++
T Consensus 256 d~~era~aLve--aGvd~I~Id~a~g~~~~v~~~i~~i~~~--~~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVK--ASVDAIVLDTAHGHSQGVIDKVKEVRAK--YPSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHH--CTTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHh--hccceEEecccccchhhhhhHHHHHHHh--CCCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 44555555666 6899999999 8766554 699999987 577888864 345788999999999987764
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=45.85 E-value=6.5 Score=39.27 Aligned_cols=30 Identities=17% Similarity=-0.073 Sum_probs=22.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
++| .|.+|+||+++|++|-. +.+.+||.+|
T Consensus 4 i~I-~G~~GSGKSTla~~La~---~~~~~~i~~D 33 (253)
T 2ze6_A 4 HLI-YGPTCSGKTDMAIQIAQ---ETGWPVVALD 33 (253)
T ss_dssp EEE-ECCTTSSHHHHHHHHHH---HHCCCEEECC
T ss_pred EEE-ECCCCcCHHHHHHHHHh---cCCCeEEecc
Confidence 445 79999999999999843 3345777776
No 312
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=45.77 E-value=76 Score=31.54 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 54 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 54 GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.+++++++++. ..+||++-.+-.+.+.+.+++..||+.+++=
T Consensus 189 ~~~~i~~v~~~---~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV---TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh---cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 45688888876 4799999888888999999999999999864
No 313
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=45.63 E-value=24 Score=35.06 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHhhCCCccEEEEccCCC-----C-CHHHHHHHHHhhcCC-CCceEE--EEecCCChHHHHHHHhCCCCEE
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEVMPC-----L-SGVALLSKIMSHKTR-KNLPVI--MMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDlMP~-----m-dGleLL~~Ir~~~~~-p~iPVI--vmTa~~d~~~av~Am~aGA~DY 95 (687)
.+..++++.+.+ ...|++-+|+|.+ + -|.++++.||.. + +.+|+. +|.... ...+..+.++||+-+
T Consensus 17 ~~l~~~i~~l~~--~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~--~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~i 91 (228)
T 3ovp_A 17 ANLGAECLRMLD--SGADYLHLDVMDGHFVPNITFGHPVVESLRKQ--LGQDPFFDMHMMVSKP-EQWVKPMAVAGANQY 91 (228)
T ss_dssp GGHHHHHHHHHH--TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHH--HCSSSCEEEEEECSCG-GGGHHHHHHHTCSEE
T ss_pred hhHHHHHHHHHH--cCCCEEEEEecCCCcCcccccCHHHHHHHHHh--hCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEE
Confidence 456788898887 6788888888433 2 389999999977 2 455554 455332 346778889999776
Q ss_pred EeCCCCHHHHHHHHHHH
Q 005631 96 LVKPIRKNELKNLWQHV 112 (687)
Q Consensus 96 L~KP~~~eeL~~~L~~a 112 (687)
.+-....+.+...++.+
T Consensus 92 tvH~Ea~~~~~~~i~~i 108 (228)
T 3ovp_A 92 TFHLEATENPGALIKDI 108 (228)
T ss_dssp EEEGGGCSCHHHHHHHH
T ss_pred EEccCCchhHHHHHHHH
Confidence 66543333454444443
No 314
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=45.31 E-value=1.2e+02 Score=30.60 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe-CCCCHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPIRKN 103 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~-KP~~~e 103 (687)
+..+.++.+.. ..+|.|++|+ =...+--.+...|+... ...++++|=....+...+..++..|++..++ |--+.+
T Consensus 25 ~~p~~~e~a~~--~g~D~vilDlEhav~~~~k~~~~l~a~~-~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~sae 101 (261)
T 3qz6_A 25 YNPDIVRIYAE--AGLDYFIVDCEHAAYTFREINHLVSVAK-NAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAE 101 (261)
T ss_dssp CCTTHHHHHHH--TTCSEEEEESSSSCCCHHHHHHHHHHHH-HHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHH
T ss_pred CCHHHHHHHhc--CCcCEEEEeccCCCCCHHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHH
Confidence 34667777776 7899999999 44444444555555432 1244555554555667899999999876443 223678
Q ss_pred HHHHHHHH
Q 005631 104 ELKNLWQH 111 (687)
Q Consensus 104 eL~~~L~~ 111 (687)
++..++..
T Consensus 102 d~~~~~~~ 109 (261)
T 3qz6_A 102 TMRETVRL 109 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766553
No 315
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=45.18 E-value=60 Score=32.17 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=56.8
Q ss_pred HhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 14 EIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 14 e~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-------leLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..|....... .+..+.++.+.. .+|+|++.. .|+..| ++-++++|+. .+.++|. +.+--+.+.
T Consensus 109 ~~~G~k~gval~p~t~~e~l~~~l~---~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~--~~~~~I~-VdGGI~~~t 182 (228)
T 3ovp_A 109 RENGMKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ--FPSLDIE-VDGGVGPDT 182 (228)
T ss_dssp HHTTCEEEEEECTTSCGGGTGGGGG---GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH--CTTCEEE-EESSCSTTT
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHhc---cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh--cCCCCEE-EeCCcCHHH
Confidence 45566532222 123344443332 489999877 887766 4556777765 3566655 445456889
Q ss_pred HHHHHhCCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 005631 84 VFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 114 (687)
Q Consensus 84 av~Am~aGA~DYL~-----KP~~~eeL~~~L~~alr 114 (687)
+.++.++||+-++. +--++.+-...|+..++
T Consensus 183 ~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~ 218 (228)
T 3ovp_A 183 VHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS 218 (228)
T ss_dssp HHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999998775 33355544444444433
No 316
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=45.15 E-value=41 Score=35.97 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.+.+ ..+|+|.+|. -... .-++.+++|++. ++.++||+-+ -.+.+.+.+++++||+-..+
T Consensus 108 ~~~~~~~~lie--aGvd~I~idta~G~~~~~~~~I~~ik~~--~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 108 GNEERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp TCHHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHH--CTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHh--cCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 33556666666 6799999998 4322 235678888877 5788887632 24678999999999988777
No 317
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=44.88 E-value=62 Score=35.70 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCH-HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+.++.+.+ ..+|+|.+|. ...... ++++++|++. ++.+|||+-.- .+.+.+..+.++||+.+.+
T Consensus 255 ~~~~~a~~~~~--aG~d~v~i~~~~G~~~~~~~~i~~i~~~--~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 255 DDKYRLDLLTQ--AGVDVIVLDSSQGNSVYQIAMVHYIKQK--YPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp THHHHHHHHHH--TTCSEEEECCSCCCSHHHHHHHHHHHHH--CTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHHH--cCCCEEEeeccCCcchhHHHHHHHHHHh--CCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34555566666 6799999998 654433 5889999987 46889886332 5678899999999987766
No 318
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=44.67 E-value=54 Score=34.86 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe------C-CCCHHHHHHHHHHHHHHH
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV------K-PIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~------K-P~~~eeL~~~L~~alr~~ 116 (687)
++++.+|++. .+.+|||...+-.+.+.+.+++.+||+...+ . |.-..++..-|..++...
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~ 331 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence 7788888876 4689999999999999999999999876653 3 655566666666655543
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.57 E-value=6.7 Score=36.61 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=15.0
Q ss_pred CCCCCCChhHHHHHhh
Q 005631 192 DQLAECPDSTCAQVIH 207 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH 207 (687)
.|++|+||+++++.|-
T Consensus 8 ~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLA 23 (189)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 6999999999999995
No 320
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=44.54 E-value=7.2 Score=36.49 Aligned_cols=21 Identities=0% Similarity=-0.133 Sum_probs=17.2
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.| .|+||+||+++++.|-..
T Consensus 8 i~i-~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 8 LVL-LGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHhh
Confidence 444 799999999999998543
No 321
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=44.47 E-value=1e+02 Score=32.58 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=55.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCCHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIRKN 103 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~~e 103 (687)
+..+|+++++.. ..+++.+++- +|.. -++.+.+|++. ..+||+.==.-.+...+.++++.|+.|+| .|+...-
T Consensus 209 ~~~~a~~~~~~l-~~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 283 (372)
T 3tj4_A 209 DLPTCQRFCAAA-KDLDIYWFEEPLWYD-DVTSHARLARN---TSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLG 283 (372)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEESCSCTT-CHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHH-hhcCCCEEECCCCch-hHHHHHHHHhh---cCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccC
Confidence 678888888763 3578888888 7743 37777888876 46887754445567888999999977766 6776644
Q ss_pred HHHHH
Q 005631 104 ELKNL 108 (687)
Q Consensus 104 eL~~~ 108 (687)
=|...
T Consensus 284 Git~~ 288 (372)
T 3tj4_A 284 GITEY 288 (372)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 44443
No 322
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=44.38 E-value=7.7 Score=35.92 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=23.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+.+ +|.+|+||+++|+.+-..-...+-|+|.++
T Consensus 8 i~l-~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 8 VWL-TGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 444 899999999999998653222344777766
No 323
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=44.37 E-value=31 Score=35.46 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCccEEEEc-------------------------c-C--C--------CCCHHHHHH
Q 005631 16 AVMKVITEATNGLQAWKILEDLTNHIDLVLTE-------------------------V-M--P--------CLSGVALLS 59 (687)
Q Consensus 16 ~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlD-------------------------l-M--P--------~mdGleLL~ 59 (687)
.|..++..+.+..++++.+. ...|+|.+. . + . ...++++++
T Consensus 124 ~g~~v~~~~~~~~e~~~a~~---~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~ 200 (305)
T 2nv1_A 124 YTVPFVCGCRDLGEATRRIA---EGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLL 200 (305)
T ss_dssp CSSCEEEEESSHHHHHHHHH---TTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHH---CCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHH
Confidence 35566677888889988874 468888772 0 1 0 123568888
Q ss_pred HHHhhcCCCCceEE--EEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 60 KIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 60 ~Ir~~~~~p~iPVI--vmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
++++. ..+||| ...+-.+.+.+.+++..||+.+++=-
T Consensus 201 ~i~~~---~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGs 239 (305)
T 2nv1_A 201 QIKKD---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGS 239 (305)
T ss_dssp HHHHH---TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECG
T ss_pred HHHHh---cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcH
Confidence 88875 468888 55556688999999999999887653
No 324
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=44.37 E-value=1.2e+02 Score=27.86 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=41.8
Q ss_pred CccEEEEcc---CCCC------C----------HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC
Q 005631 40 HIDLVLTEV---MPCL------S----------GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 100 (687)
Q Consensus 40 ~pDLVLlDl---MP~m------d----------GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~ 100 (687)
.+.+|++|+ |-+. + -.++++.+++. .++++++|+.........+-..|..+|+....
T Consensus 7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k 82 (180)
T 1k1e_A 7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGKL 82 (180)
T ss_dssp GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESCS
T ss_pred CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCCC
Confidence 367899998 4322 1 34678888765 68999999987765555555679888886554
Q ss_pred CHHH
Q 005631 101 RKNE 104 (687)
Q Consensus 101 ~~ee 104 (687)
+..+
T Consensus 83 ~k~~ 86 (180)
T 1k1e_A 83 EKET 86 (180)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 4433
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=44.17 E-value=7.4 Score=36.47 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=17.8
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|+| +|.+|+||+++|+.+-..
T Consensus 13 I~l-~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 13 ILI-TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHh
Confidence 555 899999999999998643
No 326
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=44.00 E-value=4.8 Score=43.10 Aligned_cols=11 Identities=0% Similarity=0.392 Sum_probs=7.3
Q ss_pred HHHHHHHHHhh
Q 005631 633 EAAVTKYRQKK 643 (687)
Q Consensus 633 ~~~~~r~~~kr 643 (687)
++.|.+|.++-
T Consensus 81 ~~~i~~F~~~~ 91 (456)
T 4g68_A 81 KEIIDQWNKEN 91 (456)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 45678887654
No 327
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=43.55 E-value=54 Score=33.05 Aligned_cols=80 Identities=6% Similarity=-0.089 Sum_probs=54.9
Q ss_pred hCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCC-CCHHHHHHHHHhhcC--CCCceEEEEecCCChHHHHHHHh
Q 005631 15 IAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKT--RKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 15 ~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~-mdGleLL~~Ir~~~~--~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
..|..++..+.+.+|+...+.. .+|+|=+.. +-+ .-+++.+.+|...-. ..++|||..++-.+.+.+.+++.
T Consensus 152 ~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~ 228 (254)
T 1vc4_A 152 RLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG 228 (254)
T ss_dssp HHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT
T ss_pred HCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc
Confidence 5688877889999998766664 457775543 211 112444444443310 01688999999999999999999
Q ss_pred CCCCEEEeC
Q 005631 90 KGAVDFLVK 98 (687)
Q Consensus 90 aGA~DYL~K 98 (687)
||+.+|+=
T Consensus 229 -Ga~gvlVG 236 (254)
T 1vc4_A 229 -LFDAVLIG 236 (254)
T ss_dssp -TCSEEEEC
T ss_pred -CCCEEEEe
Confidence 99999873
No 328
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=43.28 E-value=68 Score=31.50 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhhCCCccEE-EEcc-CC---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLV-LTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLV-LlDl-MP---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+..+.+.+ ..+|.| |.|+ -. ...-++++++|++. -.+|||+--+-.+.+.+.+++..||+..++
T Consensus 36 ~~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 56666666766 567744 5565 22 12347899999876 489999998889999999999999776654
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=43.16 E-value=7.8 Score=35.69 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=17.3
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|+| .|.+|+||.++|+.+-.
T Consensus 6 I~i-~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 6 VVV-TGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEE-ECCTTSCHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 455 89999999999999865
No 330
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=43.12 E-value=7.7 Score=37.13 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=17.3
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|.| .|++|+||+++++.|-..
T Consensus 25 v~I-~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 25 VAL-SGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEE-ECCTTSCTHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 555 799999999999988543
No 331
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=43.11 E-value=39 Score=33.03 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=35.2
Q ss_pred HHHHHHHHhhC--CCccEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 28 LQAWKILEDLT--NHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 28 ~eALe~L~~~~--~~pDLVLlDl-MP-----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
..+|+.+.+.- ..+||||+|- .. -.+--++++.|...+ ... -||||+...+..+.+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~-~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQ-TVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTC-EEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCC-EEEEECCCCcHHHHHh
Confidence 34554444311 5699999997 32 345557888888663 445 4557777666666554
No 332
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=42.93 E-value=7.9 Score=36.29 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|.+|+||.++|+.+-.
T Consensus 5 i~i-~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 5 VTI-DGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 445 89999999999999853
No 333
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=42.63 E-value=1.3e+02 Score=33.72 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCCCccEEE-Ecc-CCCC---CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh-CCCCEEEe---
Q 005631 27 GLQAWKILEDLTNHIDLVL-TEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS-KGAVDFLV--- 97 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVL-lDl-MP~m---dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~-aGA~DYL~--- 97 (687)
..+..+.+.+ ..++.|| +|+ -.++ -.++++++|++. -.+|||.--+-.+.+.+.++++ .|++..++
T Consensus 454 ~~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a 528 (555)
T 1jvn_A 454 VWELTRACEA--LGAGEILLNCIDKDGSNSGYDLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 528 (555)
T ss_dssp HHHHHHHHHH--TTCCEEEECCGGGTTTCSCCCHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 3455555555 4566555 454 3222 247899999876 5899998888889999999998 89999876
Q ss_pred ---CCCCHHHHHHHH
Q 005631 98 ---KPIRKNELKNLW 109 (687)
Q Consensus 98 ---KP~~~eeL~~~L 109 (687)
.|+...+++..+
T Consensus 529 ~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 529 FHRGEFTVNDVKEYL 543 (555)
T ss_dssp HHTTSCCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 478888877654
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=42.25 E-value=8.1 Score=35.06 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=17.1
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|+| +|.+|+||+++|+.+-.
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYL-IGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEE-ESCTTSCHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 455 79999999999999865
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.16 E-value=7.6 Score=36.48 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=15.6
Q ss_pred CCCCCCChhHHHHHhhhc
Q 005631 192 DQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH~~ 209 (687)
.|++|+||.++++.|-..
T Consensus 7 ~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp ESSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999998543
No 336
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.93 E-value=7.6 Score=37.30 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.| .|++|+||.++++.+-..
T Consensus 11 i~l-~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 11 IVL-SGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHS
T ss_pred EEE-ECcCCCCHHHHHHHHHhh
Confidence 444 799999999999988543
No 337
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=41.87 E-value=7.1 Score=37.03 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=16.8
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|-| +|.+|+||+++++.|-.
T Consensus 9 i~i-~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 9 IGI-AGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEE-EESTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 445 79999999999999854
No 338
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=41.74 E-value=1.2e+02 Score=31.09 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCceEEEEecCCC--hHHHHHHHhCCCCEEEeCCC--CHHHHHHHHHHHH
Q 005631 68 KNLPVIMMSSLDS--MGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 113 (687)
Q Consensus 68 p~iPVIvmTa~~d--~~~av~Am~aGA~DYL~KP~--~~eeL~~~L~~al 113 (687)
+.+-+|+|+.... .+.+.+|+++|-.=|+.||+ +.++...++..+-
T Consensus 85 ~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 85 DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHH
T ss_pred CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHH
Confidence 4666777765443 57899999999999999996 5777777665443
No 339
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=41.71 E-value=1e+02 Score=29.12 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=56.9
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHhhC-CCccEEEEcc-CCCCCHHHHHHHHHhhcCCC-CceEEEEecCCChHHHHHHH
Q 005631 12 CFEIAVMKVITEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRK-NLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 12 lLe~~G~~~V~~A~sg~eALe~L~~~~-~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p-~iPVIvmTa~~d~~~av~Am 88 (687)
.|...+.-.+....+.+++.++++... ..+++|-+.+ .| .+.+.++.+|+. ++ ++ +|-+..-.+.+.+..|.
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~--~~~~~-~ig~~~v~~~~~~~~a~ 80 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFL--KEKGA-IIGAGTVTSVEQCRKAV 80 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHH--HHTTC-EEEEESCCSHHHHHHHH
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHH--CCCCc-EEEecccCCHHHHHHHH
Confidence 345556554556677887776654311 4688886666 55 567888888876 23 33 33343335788899999
Q ss_pred hCCCCEEEeCCCCHHHHHH
Q 005631 89 SKGAVDFLVKPIRKNELKN 107 (687)
Q Consensus 89 ~aGA~DYL~KP~~~eeL~~ 107 (687)
+.||+-. +-|.-..++..
T Consensus 81 ~~Gad~i-v~~~~~~~~~~ 98 (205)
T 1wa3_A 81 ESGAEFI-VSPHLDEEISQ 98 (205)
T ss_dssp HHTCSEE-ECSSCCHHHHH
T ss_pred HcCCCEE-EcCCCCHHHHH
Confidence 9998654 77755444443
No 340
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=41.63 E-value=8.3 Score=39.64 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=18.1
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|++ .|+.||||.++|.+|-..
T Consensus 107 ~~l-~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 107 IWL-FGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHhh
Confidence 666 899999999999999653
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.51 E-value=7.3 Score=36.99 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.8
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|.| +|.+|+||+++|+.|-..
T Consensus 24 i~i-~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 24 IGI-SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEE-EESTTSSHHHHHHHHHTT
T ss_pred EEE-ECCCCCCHHHHHHHHHHh
Confidence 556 899999999999999643
No 342
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=41.45 E-value=2e+02 Score=25.92 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=54.9
Q ss_pred EeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCH
Q 005631 23 EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK 102 (687)
Q Consensus 23 ~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~ 102 (687)
-.-+.++..+++.. .|++|+=...+.-|+.+++.+. ..+|||+.. .....+.+..|-..|+. |.+.
T Consensus 84 g~~~~~e~~~~~~~----adi~v~ps~~e~~~~~~~Eama-----~G~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~ 149 (177)
T 2f9f_A 84 GSVSEEELIDLYSR----CKGLLCTAKDEDFGLTPIEAMA-----SGKPVIAVN----EGGFKETVINEKTGYLV-NADV 149 (177)
T ss_dssp ESCCHHHHHHHHHH----CSEEEECCSSCCSCHHHHHHHH-----TTCCEEEES----SHHHHHHCCBTTTEEEE-CSCH
T ss_pred CCCCHHHHHHHHHh----CCEEEeCCCcCCCChHHHHHHH-----cCCcEEEeC----CCCHHHHhcCCCccEEe-CCCH
Confidence 34455666777765 6777762244445777877765 367887642 24556667778889999 9999
Q ss_pred HHHHHHHHHHHHH
Q 005631 103 NELKNLWQHVWRR 115 (687)
Q Consensus 103 eeL~~~L~~alr~ 115 (687)
++|...|.+++..
T Consensus 150 ~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 150 NEIIDAMKKVSKN 162 (177)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988754
No 343
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=41.14 E-value=10 Score=36.02 Aligned_cols=21 Identities=10% Similarity=-0.039 Sum_probs=17.3
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+++ .|.+|+||.++++.|-..
T Consensus 15 i~l-~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 15 LVV-CGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHh
Confidence 445 799999999999998543
No 344
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.07 E-value=11 Score=36.00 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=26.2
Q ss_pred CCCCccccCCCCCCCChhHHHHHhhhcCc-ccCCCceecC
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIHSNAE-ITGSRRVPVT 221 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH~~S~-R~~~pFV~vn 221 (687)
.....|++ .|.+|+||.++|+.|...-. ..+.+++.++
T Consensus 23 ~~~~~i~~-~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWL-TGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEE-ECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEE-ECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44444555 79999999999999865433 2344577776
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.00 E-value=11 Score=37.34 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=23.0
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.|+| +|+||+||+.+|..+-..- . ++|+.|
T Consensus 36 ~ilI-~GpsGsGKStLA~~La~~g---~-~iIsdD 65 (205)
T 2qmh_A 36 GVLI-TGDSGVGKSETALELVQRG---H-RLIADD 65 (205)
T ss_dssp EEEE-ECCCTTTTHHHHHHHHTTT---C-EEEESS
T ss_pred EEEE-ECCCCCCHHHHHHHHHHhC---C-eEEecc
Confidence 3677 8999999999998885432 2 778776
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=40.89 E-value=7.5 Score=36.66 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=17.1
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|.+|+||+++|+.|-.
T Consensus 4 i~i-~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGL-TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEE-EECTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCcCHHHHHHHHHH
Confidence 455 89999999999999854
No 347
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=40.73 E-value=2.1e+02 Score=31.62 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=57.2
Q ss_pred HHHHHHHhCC-CeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-CCC-----------CCHHHHHHHHHhhcCCCCceEE
Q 005631 8 LLLLCFEIAV-MKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-MPC-----------LSGVALLSKIMSHKTRKNLPVI 73 (687)
Q Consensus 8 ll~~lLe~~G-~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~-----------mdGleLL~~Ir~~~~~p~iPVI 73 (687)
+++.+.+..+ ..+ +..+.+.++|..++.. ..|.|++.+ -.. ...+.++..+.+......+|||
T Consensus 287 ~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 363 (511)
T 3usb_A 287 KVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVI 363 (511)
T ss_dssp HHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEE
Confidence 4444444432 332 3467788888777764 688887643 211 2335555555432111369999
Q ss_pred EEecCCChHHHHHHHhCCCCEEEeC
Q 005631 74 MMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 74 vmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.--+-.+...+.+|+.+||+..+.=
T Consensus 364 a~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 364 ADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEES
T ss_pred EeCCCCCHHHHHHHHHhCchhheec
Confidence 9889999999999999999998764
No 348
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=40.69 E-value=1.4e+02 Score=29.49 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCC--hHH----HHHHHhCCCCEEEe----
Q 005631 28 LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS--MGL----VFKCLSKGAVDFLV---- 97 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d--~~~----av~Am~aGA~DYL~---- 97 (687)
.++.+.+.+ ...|+|.+.. + -+++++++|++. ..+|||...+-.. .+. +.++++.||+.++.
T Consensus 169 ~~~a~~a~~--~Gad~i~~~~-~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i 240 (273)
T 2qjg_A 169 AHAARLGAE--LGADIVKTSY-T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNI 240 (273)
T ss_dssp HHHHHHHHH--TTCSEEEECC-C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHH
T ss_pred HHHHHHHHH--cCCCEEEECC-C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHh
Confidence 344355555 6789888764 2 368999999876 3799999887763 444 66677899988764
Q ss_pred -CCCCHHHHHHHHHHHHH
Q 005631 98 -KPIRKNELKNLWQHVWR 114 (687)
Q Consensus 98 -KP~~~eeL~~~L~~alr 114 (687)
+.-++.+....+..++.
T Consensus 241 ~~~~~~~~~~~~l~~~~~ 258 (273)
T 2qjg_A 241 FQHDDVVGITRAVCKIVH 258 (273)
T ss_dssp HTSSSHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHh
Confidence 22244444444444443
No 349
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=40.64 E-value=9 Score=36.24 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=16.8
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|.+|+||+++++.|-.
T Consensus 5 i~l-~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGL-TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEE-ECSTTSCHHHHHHHHHT
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 344 89999999999999943
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=40.55 E-value=7.1 Score=35.91 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=16.2
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCce
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRV 218 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV 218 (687)
|++ +|..|+||+++|+.+-. +-+.+||
T Consensus 8 I~l-~G~~GsGKST~a~~La~---~l~~~~i 34 (183)
T 2vli_A 8 IWI-NGPFGVGKTHTAHTLHE---RLPGSFV 34 (183)
T ss_dssp EEE-ECCC----CHHHHHHHH---HSTTCEE
T ss_pred EEE-ECCCCCCHHHHHHHHHH---hcCCCEE
Confidence 455 89999999999999843 2334666
No 351
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=40.53 E-value=1.8e+02 Score=30.65 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred HHHHHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-C-C----CCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 9 LLLCFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-M-P----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 9 l~~lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-P----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
+..+-+..+..+ |..+.+.++|...++ ..+|.|.+.- - . ...-++++..+++.- ...+|||.-.+-.+.
T Consensus 217 i~~l~~~~~~pv~vK~~~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~~~ipvia~GGI~~~ 292 (370)
T 1gox_A 217 VAWLQTITSLPILVKGVITAEDARLAVQ---HGAAGIIVSNHGARQLDYVPATIMALEEVVKAA-QGRIPVFLDGGVRRG 292 (370)
T ss_dssp HHHHHHHCCSCEEEECCCSHHHHHHHHH---TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-TTSSCEEEESSCCSH
T ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHH---cCCCEEEECCCCCccCCCcccHHHHHHHHHHHh-CCCCEEEEECCCCCH
Confidence 444445445553 335678888766655 4689888743 2 1 124577888887652 247999999999999
Q ss_pred HHHHHHHhCCCCEEEeC
Q 005631 82 GLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~K 98 (687)
..+.+++.+||+...+=
T Consensus 293 ~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 293 TDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHcCCCEEeec
Confidence 99999999999987764
No 352
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.38 E-value=7.8 Score=35.88 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=21.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ .|.+|+||+++|+.+-.. -+-+||..+
T Consensus 8 I~l-~G~~GsGKST~~~~L~~~---l~~~~i~~D 37 (193)
T 2rhm_A 8 IIV-TGHPATGKTTLSQALATG---LRLPLLSKD 37 (193)
T ss_dssp EEE-EESTTSSHHHHHHHHHHH---HTCCEEEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---cCCeEecHH
Confidence 455 899999999999998542 233555543
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=40.29 E-value=9 Score=38.11 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=16.5
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|-| +|++|+||+++++.|-
T Consensus 30 I~I-~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 30 ITV-DGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEE-ECCTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 455 7999999999999984
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=40.08 E-value=7.7 Score=36.15 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=23.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++ .|.+|+||.++|+.|...-...+.+++.++
T Consensus 16 i~l-~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 16 VWL-TGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 455 799999999999999765444445555554
No 355
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=40.00 E-value=9.4 Score=35.17 Aligned_cols=20 Identities=10% Similarity=-0.205 Sum_probs=16.9
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|++ .|..|+||+++|+.+-.
T Consensus 6 I~l-~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 6 VFV-LGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEE-ECCTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 455 89999999999998853
No 356
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.00 E-value=9.1 Score=39.51 Aligned_cols=20 Identities=0% Similarity=-0.150 Sum_probs=17.1
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
+++ .|++||||.++|++|-.
T Consensus 49 ~ll-~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLF-YGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEE-ECSSSSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 666 89999999999998843
No 357
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=39.90 E-value=9.4 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=16.3
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|+| +|.+|+||+++|+.+-
T Consensus 3 I~l-~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 3 IVL-MGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 445 7999999999999984
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=39.83 E-value=8.8 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=21.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
|.| +|.+|+||+++|+.+-.. +-+||-.
T Consensus 11 I~i-~G~~GsGKST~~~~La~~----g~~~id~ 38 (203)
T 1uf9_A 11 IGI-TGNIGSGKSTVAALLRSW----GYPVLDL 38 (203)
T ss_dssp EEE-EECTTSCHHHHHHHHHHT----TCCEEEH
T ss_pred EEE-ECCCCCCHHHHHHHHHHC----CCEEEcc
Confidence 555 899999999999999654 4455543
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=39.81 E-value=9.5 Score=38.97 Aligned_cols=30 Identities=3% Similarity=0.026 Sum_probs=21.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++ .|.+|+||+++|+.+-..- ...++.|+
T Consensus 36 ivl-~G~sGsGKSTla~~L~~~~---~~~~~~Is 65 (287)
T 1gvn_B 36 FLL-GGQPGSGKTSLRSAIFEET---QGNVIVID 65 (287)
T ss_dssp EEE-ECCTTSCTHHHHHHHHHHT---TTCCEEEC
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh---CCCeEEEe
Confidence 455 8999999999999985432 23456666
No 360
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=39.75 E-value=9.4 Score=35.48 Aligned_cols=18 Identities=17% Similarity=-0.097 Sum_probs=15.3
Q ss_pred cccCCCCCCCChhHHHHHh
Q 005631 188 MSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI 206 (687)
+.+ .|++|+||+++++.+
T Consensus 12 ~~l-~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 12 VVL-IGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEE-ECCTTSCHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHH
Confidence 445 699999999999974
No 361
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=39.63 E-value=50 Score=34.23 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-C--C------CCCHHHHHHHHHhhcCCCCceEEEEecCC------------C-----
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-M--P------CLSGVALLSKIMSHKTRKNLPVIMMSSLD------------S----- 80 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-M--P------~mdGleLL~~Ir~~~~~p~iPVIvmTa~~------------d----- 80 (687)
...|.+++.+ ....+|+||.. . | ++..+.. +++. ++.+|||+-+.|. -
T Consensus 150 i~~ave~i~~-~Gn~~i~L~erg~~y~~~~~~vdl~~i~~---lk~~--~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v 223 (285)
T 3sz8_A 150 LKHVVSKCGE-VGNDRVMLCERGSSFGYDNLVVDMLGFRQ---MAET--TGGCPVIFDVTHSLQCRDPLGDASGGRRRQV 223 (285)
T ss_dssp THHHHHHHHH-TTCCCEEEEECCEECSSSCEECCTTHHHH---HHHH--TTSCCEEEETTTTCC---------------H
T ss_pred HHHHHHHHHH-cCCCcEEEEeCCCCCCCCcCccCHHHHHH---HHHh--CCCCCEEEeCCCccccCCCcCCCCCCchhhH
Confidence 3568888876 35679999975 3 2 3445544 4444 3468999877776 2
Q ss_pred hHHHHHHHhCCCCE-EEeCCC
Q 005631 81 MGLVFKCLSKGAVD-FLVKPI 100 (687)
Q Consensus 81 ~~~av~Am~aGA~D-YL~KP~ 100 (687)
...+..|+.+||+. ||.|-+
T Consensus 224 ~~~a~AAvA~GA~gl~IE~H~ 244 (285)
T 3sz8_A 224 LDLARAGIAVGIAGLFLEAHP 244 (285)
T ss_dssp HHHHHHHHHHCCSEEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecc
Confidence 55778899999996 565543
No 362
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=39.58 E-value=1.1e+02 Score=32.53 Aligned_cols=78 Identities=9% Similarity=-0.003 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCCHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIRKN 103 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~~e 103 (687)
+.++|+++++.. ..++|.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|+| +||...-
T Consensus 230 ~~~~ai~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 304 (410)
T 2gl5_A 230 GTNSAIQFAKAI-EKYRIFLYEEPIHP-LNSDNMQKVSRS---TTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304 (410)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECSSCS-SCHHHHHHHHHH---CSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHH-HhcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 678888888763 3578888888 774 447788888876 36887765455578899999999977766 5675544
Q ss_pred HHHHH
Q 005631 104 ELKNL 108 (687)
Q Consensus 104 eL~~~ 108 (687)
=|...
T Consensus 305 Git~~ 309 (410)
T 2gl5_A 305 GITEG 309 (410)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 44443
No 363
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=39.46 E-value=1.5e+02 Score=31.57 Aligned_cols=86 Identities=9% Similarity=-0.023 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCeE-EEEe---CCHHHHHHHHHhhCCCccEEEEccCC---------------------CCCHHHHHHHHH
Q 005631 8 LLLLCFEIAVMKV-ITEA---TNGLQAWKILEDLTNHIDLVLTEVMP---------------------CLSGVALLSKIM 62 (687)
Q Consensus 8 ll~~lLe~~G~~~-V~~A---~sg~eALe~L~~~~~~pDLVLlDlMP---------------------~mdGleLL~~Ir 62 (687)
.++.+.+..+..+ |..+ .+.++|..+.+. .+|.|.++--. +...++++..++
T Consensus 197 ~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~ 273 (365)
T 3sr7_A 197 HLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQ 273 (365)
T ss_dssp HHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHG
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHH
Confidence 4444545545443 3324 577777776654 68888764210 123446666665
Q ss_pred hhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 63 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 63 ~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.. ...+|||.-.+-.+...+++|+.+||+...+=
T Consensus 274 ~~--~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 274 PL--MDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp GG--TTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred Hh--cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 54 35799999888899999999999999987664
No 364
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=39.45 E-value=1.4e+02 Score=29.72 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhCCC-ccEEEEcc-CCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe----
Q 005631 27 GLQAWKILEDLTNH-IDLVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV---- 97 (687)
Q Consensus 27 g~eALe~L~~~~~~-pDLVLlDl-MP~-md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~---- 97 (687)
..+.++.+.+ .. -.+|++|+ --+ +. .+++++.|.+. .+.+|||.--+-.+.+.+.+. +.++...++
T Consensus 153 ~~~~~~~~~~--~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~--~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al 227 (243)
T 4gj1_A 153 LMEVLDFYSN--KGLKHILCTDISKDGTMQGVNVRLYKLIHEI--FPNICIQASGGVASLKDLENL-KGICSGVIVGKAL 227 (243)
T ss_dssp HHHHHHHHHT--TTCCEEEEEETTC-----CCCHHHHHHHHHH--CTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHH
T ss_pred HHHHHHHHhh--cCCcEEEeeeecccccccCCCHHHHHHHHHh--cCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHH
Confidence 4555666655 33 36889988 433 23 35789999876 478999998888888888664 667777765
Q ss_pred --CCCCHHHHHHHH
Q 005631 98 --KPIRKNELKNLW 109 (687)
Q Consensus 98 --KP~~~eeL~~~L 109 (687)
.-++.+|++..|
T Consensus 228 ~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 228 LDGVFSVEEGIRCL 241 (243)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HCCCCCHHHHHHHh
Confidence 346666665544
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.20 E-value=9.8 Score=36.26 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=20.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
|+| +|.+|+||+++|+.+-. +.+-++|.+
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~---~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVL-MGLPGAGKGTQGERIVE---KYGIPHIST 31 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH---HSSCCEEEH
T ss_pred EEE-ECCCCCCHHHHHHHHHH---HhCCcEEeH
Confidence 445 79999999999999843 233455544
No 366
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=39.10 E-value=60 Score=35.15 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCCCCH-HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+.++.+.+ ..+|+|++|. ...-.. ++++++|++. + .+|||+= .-.+.+.+..++++||+-.++
T Consensus 146 ~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~--~-~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSK--M-NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTT--C-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhc--C-CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 455566655 5799999998 543222 5788888765 3 6787752 224688999999999998887
No 367
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=38.90 E-value=8.4 Score=35.45 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=22.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|.+|+||.++|+.+...=...+-+++.++
T Consensus 4 I~i-~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 4 GIV-TGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEE-EECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 445 799999999999998654322233455544
No 368
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=38.75 E-value=1.5e+02 Score=28.43 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEc----------c-CC----CCCHHHHHHHHHhhc
Q 005631 7 MLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTE----------V-MP----CLSGVALLSKIMSHK 65 (687)
Q Consensus 7 ~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlD----------l-MP----~mdGleLL~~Ir~~~ 65 (687)
.++..+..+...++.....+.+++++..++....+|+||.- + .| ..+|+++++.|....
T Consensus 18 ~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a~ 91 (196)
T 2q5c_A 18 NLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAK 91 (196)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHHG
T ss_pred HHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHHH
Confidence 35555555555554446778888888876543568988842 1 22 456666666665543
No 369
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=38.73 E-value=2.2e+02 Score=25.67 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 105 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL 105 (687)
+.++..+++.. .|++|+-...+.-|+.+++.+. ..+|||.. . .....+.+ .|-..|+..|-+.++|
T Consensus 105 ~~~~~~~~~~~----ad~~l~ps~~e~~~~~~~Ea~a-----~G~PvI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l 170 (200)
T 2bfw_A 105 SREFVRELYGS----VDFVIIPSYFEPFGLVALEAMC-----LGAIPIAS-A---VGGLRDII-TNETGILVKAGDPGEL 170 (200)
T ss_dssp CHHHHHHHHTT----CSEEEECCSCCSSCHHHHHHHH-----TTCEEEEE-S---CHHHHHHC-CTTTCEEECTTCHHHH
T ss_pred CHHHHHHHHHH----CCEEEECCCCCCccHHHHHHHH-----CCCCEEEe-C---CCChHHHc-CCCceEEecCCCHHHH
Confidence 44455566543 6777774433445777888775 35777654 2 23444555 7888999999999999
Q ss_pred HHHHHHHHH
Q 005631 106 KNLWQHVWR 114 (687)
Q Consensus 106 ~~~L~~alr 114 (687)
...|.+++.
T Consensus 171 ~~~i~~l~~ 179 (200)
T 2bfw_A 171 ANAILKALE 179 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998876
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.69 E-value=10 Score=35.04 Aligned_cols=19 Identities=11% Similarity=-0.160 Sum_probs=16.4
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|++ +|..|+||+++|+.+-
T Consensus 7 I~l-~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 7 VIF-LGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEE-ECCTTSCHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 445 7999999999999984
No 371
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=38.57 E-value=1.1e+02 Score=31.42 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
.+..+.++.+.+ ..+|+|.+.. .| .++++++++. .++|+... .+.+.+..+...|++.+++-
T Consensus 83 ~~~~~~~~~~~~--~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 83 VPYAEYRAAIIE--AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CCHHHHHHHHHH--TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred ccHHHHHHHHHh--cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 455688888887 7899999988 87 5788888765 57777543 45778889999999888873
No 372
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=38.51 E-value=1.5e+02 Score=29.68 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 55 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 55 leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
++++++|++. .++||++=.+-.+.+.+.+++..||+.+++=
T Consensus 194 ~~~i~~lr~~---~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEY---HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHT---TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhc---cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5888999876 3788887666667999999999999999874
No 373
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=38.49 E-value=27 Score=34.06 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhCCCeEEEEe--CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHH-------HHHHHHHhhcCCC----CceEEE
Q 005631 9 LLLCFEIAVMKVITEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-------ALLSKIMSHKTRK----NLPVIM 74 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A--~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGl-------eLL~~Ir~~~~~p----~iPVIv 74 (687)
+...++..|..+...+ .+..+.++.+.. ..|.|+++. .|+..|. +.+++|++. .+ .+||++
T Consensus 110 ~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~---~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~--~~~~~~~~pi~v 184 (230)
T 1rpx_A 110 TINQIKSLGAKAGVVLNPGTPLTAIEYVLD---AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKI--CAERGLNPWIEV 184 (230)
T ss_dssp HHHHHHHTTSEEEEEECTTCCGGGGTTTTT---TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH--HHHHTCCCEEEE
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHh---hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHH--HHhcCCCceEEE
Q ss_pred EecCCChHHHHHHHhCCCCEEEe
Q 005631 75 MSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 75 mTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.-+-. .+.+.+++++||+.+.+
T Consensus 185 ~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 185 DGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp ESSCC-TTTHHHHHHHTCCEEEE
T ss_pred ECCCC-HHHHHHHHHcCCCEEEE
No 374
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=38.48 E-value=1.6e+02 Score=30.30 Aligned_cols=107 Identities=9% Similarity=-0.004 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHH
Q 005631 5 LAMLLLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 84 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~a 84 (687)
+...+..+|...-|. +....+.++.++.++.....+|.+|+.. .+..-..++.++.+. .--+|+|++-.... .
T Consensus 21 l~~~~~~~L~~dRY~-l~~~~s~~~f~~~le~~~e~iDcLvle~-~~~~~~~~~~~L~~~--g~lLP~vil~~~~~---~ 93 (289)
T 1r8j_A 21 ILQDCQRALSADRYQ-LQVCESGEMLLEYAQTHRDQIDCLILVA-ANPSFRAVVQQLCFE--GVVVPAIVVGDRDS---E 93 (289)
T ss_dssp HHHHHHHHTCSTTEE-EEEECSHHHHHHHHHHSTTSCSEEEEET-TSTTHHHHHHHHHHT--TCCCCEEEESCCC-----
T ss_pred HHHHHHHhcccCceE-EEEcCcHHHHHHHHHhccccCCEEEEEe-CCCccHHHHHHHHHc--CccccEEEeccCcc---c
Confidence 445667777777787 6788899999999987567899988864 133466788899887 46789998866422 0
Q ss_pred HHHHhCCCCEE-----EeCCCCHHHHHHHHHHHHHHHhc
Q 005631 85 FKCLSKGAVDF-----LVKPIRKNELKNLWQHVWRRCHS 118 (687)
Q Consensus 85 v~Am~aGA~DY-----L~KP~~~eeL~~~L~~alr~~~~ 118 (687)
...-..|-..| -...-..++|-..|..++.++-.
T Consensus 94 ~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~Fl~ 132 (289)
T 1r8j_A 94 DPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFLR 132 (289)
T ss_dssp ----CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHHHH
T ss_pred cCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHHHc
Confidence 00000012222 23334578888888888876543
No 375
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=38.30 E-value=42 Score=35.81 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe-CC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KP 99 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~-KP 99 (687)
-+..+|+++++.. ..++|.+++- ++..+.++.+++|++. ..+||..==...+...+.++++.|+.|++. |+
T Consensus 220 ~~~~~A~~~~~~l-~~~~~~~iEeP~~~~~d~~~~~~l~~~---~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~ 292 (388)
T 4h83_A 220 YKPAVAVDLSRRI-ADLNIRWFEEPVEWHNDKRSMRDVRYQ---GSVPVCAGQTEFSASGCRDLMETGAIDVCNFDS 292 (388)
T ss_dssp BCHHHHHHHHHHT-TTSCCCCEESCBCSTTHHHHHHHHHHH---SSSCEEECTTCSSHHHHHHHHHHTCCSEECCCG
T ss_pred CCHHHHHHHHHHh-hhcCcceeecCcccccchHHHHHHHhh---cCCCccCCccccChHhHHHHHHcCCCCeEeecc
Confidence 3788899888763 4678888888 8777778888888876 467765322334677889999999999984 44
No 376
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=38.12 E-value=10 Score=35.89 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=15.9
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
+.| .|++|+||+++++.|-
T Consensus 3 i~l-~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 3 III-TGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEE-ECCTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 344 6999999999999884
No 377
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=38.09 E-value=46 Score=38.26 Aligned_cols=98 Identities=6% Similarity=-0.110 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhhCCCccEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCceEEEEecCC
Q 005631 5 LAMLLLLCFEIAVMKVITE--ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMMSSLD 79 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V~~--A~sg~eALe~L~~~~~~pDLVLlDl-MP~-md-GleLL~~Ir~~~~~p~iPVIvmTa~~ 79 (687)
...++..+|+..||+++.. ..+ ++..+.+.+ ..+|+|.+-. +.. +. .-++++.|++.. +..|++.+..
T Consensus 526 ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e--~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG----~~~V~vgG~P 598 (637)
T 1req_B 526 REGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALKAAG----AKALYLSGAF 598 (637)
T ss_dssp HHHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHHHTT----CSEEEEESCG
T ss_pred hHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh--cCCCEEEEecccHHHHHHHHHHHHHHHhCC----CCeEEEeCCC
Confidence 3467888999999997665 234 888888877 7899988865 431 22 245777777763 2345666642
Q ss_pred ChH--HHHHHHhCCCCEEEeCCCCHHHHHHHHH
Q 005631 80 SMG--LVFKCLSKGAVDFLVKPIRKNELKNLWQ 110 (687)
Q Consensus 80 d~~--~av~Am~aGA~DYL~KP~~~eeL~~~L~ 110 (687)
..+ ...+..+ |+++|+.--.+..++...|.
T Consensus 599 ~~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~ 630 (637)
T 1req_B 599 KEFGDDAAEAEK-LIDGRLFMGMDVVDTLSSTL 630 (637)
T ss_dssp GGGGGGHHHHHH-HCCCEECTTCCHHHHHHHHH
T ss_pred CccchhhHHHHh-ccceEecCCcCHHHHHHHHH
Confidence 211 1233344 99999988888766655544
No 378
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=37.71 E-value=1.5e+02 Score=32.55 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=61.1
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc--CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 89 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~ 89 (687)
.+..|..++..+.+.+|+...+.. .+|+|-+.. +-.. -.++...+|...- .++++||.-++-.+.+.+.++++
T Consensus 153 a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~dl~~~~~L~~~i-p~~~~vIaEsGI~t~edv~~~~~ 228 (452)
T 1pii_A 153 AHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSIDLNRTRELAPKL-GHNVTVISESGINTYAQVRELSH 228 (452)
T ss_dssp HHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEECTHHHHHHHHHH-CTTSEEEEESCCCCHHHHHHHTT
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCCHHHHHHHHHhC-CCCCeEEEECCCCCHHHHHHHHH
Confidence 345799999999999999888764 689888776 4321 1255566655432 14678888888999999999999
Q ss_pred CCCCEEEeC
Q 005631 90 KGAVDFLVK 98 (687)
Q Consensus 90 aGA~DYL~K 98 (687)
. |+.||+=
T Consensus 229 ~-a~avLVG 236 (452)
T 1pii_A 229 F-ANGFLIG 236 (452)
T ss_dssp T-CSEEEEC
T ss_pred h-CCEEEEc
Confidence 9 9999874
No 379
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=37.70 E-value=11 Score=36.31 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=16.9
Q ss_pred CccccCCCCCCCChhHHHHHhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH 207 (687)
.||+| .|+||+||.++++.+-
T Consensus 2 RpIVi-~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVI-SGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHH
T ss_pred CEEEE-ECCCCCCHHHHHHHHH
Confidence 35666 7999999999888763
No 380
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=37.01 E-value=53 Score=34.67 Aligned_cols=69 Identities=7% Similarity=0.091 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE-EEeCCCCH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD-FLVKPIRK 102 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D-YL~KP~~~ 102 (687)
+.++|+++++.. ..+++ +++- +| .++.+++|++. -.+||+.-=.-.+...+.++++.|+.| +..||...
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRV---ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 678888888763 34677 8887 77 57788888865 468887655556788999999888555 55678654
No 381
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=37.00 E-value=11 Score=36.28 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=17.1
Q ss_pred CccccCCCCCCCChhHHHHHhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH 207 (687)
.-+.| .|++|+||+++++.|=
T Consensus 31 ~~~~l-~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLL-TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHH
T ss_pred cEEEE-EeCCCCCHHHHHHHHH
Confidence 33556 6999999999999775
No 382
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=36.91 E-value=15 Score=35.64 Aligned_cols=18 Identities=0% Similarity=-0.232 Sum_probs=15.3
Q ss_pred cccCCCCCCCChhHHHHHh
Q 005631 188 MSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraI 206 (687)
+|+ +|+.||||.++|..+
T Consensus 8 ~l~-tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 8 CLI-TGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEE-ECCTTSSHHHHHHHH
T ss_pred EEE-EeCCCCCHHHHHHHH
Confidence 455 899999999998775
No 383
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=36.85 E-value=1.4e+02 Score=33.88 Aligned_cols=66 Identities=15% Similarity=0.049 Sum_probs=38.4
Q ss_pred CCccEEEEcc-CCCCCHH---HHHHHHHhhcCCCCceEEEEecCCChHHHHHH------Hh--CCCCEEEeCCCCHHHHH
Q 005631 39 NHIDLVLTEV-MPCLSGV---ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC------LS--KGAVDFLVKPIRKNELK 106 (687)
Q Consensus 39 ~~pDLVLlDl-MP~mdGl---eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A------m~--aGA~DYL~KP~~~eeL~ 106 (687)
..|+|+|+|= ....|-. .+++.|++... ...-||+ ..|+ .+.+... |. .+++.++..|....+..
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~-vtHd-l~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~ 314 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVIC-VEHD-LSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGI 314 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEE-ECSC-HHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHH
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCC-HHHHHHhCCEEEEEeCCccccceecCchhHHHHH
Confidence 6899999999 7777753 35666665532 2444554 4554 3444332 11 23556667777765544
Q ss_pred H
Q 005631 107 N 107 (687)
Q Consensus 107 ~ 107 (687)
.
T Consensus 315 ~ 315 (608)
T 3j16_B 315 N 315 (608)
T ss_dssp H
T ss_pred H
Confidence 3
No 384
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=36.84 E-value=76 Score=31.80 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CC--CCCHHHHHHHHHhhcCCCCceEEEEecC-CChHHHHHHHhCCCCEEEeCCCC
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MP--CLSGVALLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIR 101 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP--~mdGleLL~~Ir~~~~~p~iPVIvmTa~-~d~~~av~Am~aGA~DYL~KP~~ 101 (687)
.++++.+.+ ...|+|.+-+ .. -.+-++++++||+ ..+|||+|+.+ ..+ ..|++.+|+--+.
T Consensus 23 ~~~~~~l~~--~GaD~IelG~S~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~i-------~~gvDg~iipdLp 87 (234)
T 2f6u_A 23 DEIIKAVAD--SGTDAVMISGTQNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSNV-------VYDVDYLFVPTVL 87 (234)
T ss_dssp HHHHHHHHT--TTCSEEEECCCTTCCHHHHHHHHHHHTT----SCCCEEECCSSCCCC-------CCCSSEEEEEEET
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhcC----CCCCEEEecCCcchh-------hcCCCEEEEcccC
Confidence 556777776 6799999876 32 1224566666654 48999999998 443 7799999986443
No 385
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=36.80 E-value=73 Score=33.09 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=47.7
Q ss_pred CccEEEEcc-CCCCCHHHHHHHHHhhcCCC-CceEEEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 40 HIDLVLTEV-MPCLSGVALLSKIMSHKTRK-NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 40 ~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p-~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
..+||.+|. - ..-..+++++|++. .. .+||++=-+-.+.+.+.+++.+||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~--~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKG--LGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHH--SCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHh--cCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 468999999 5 33356899999987 23 7999998888999999999999999999865
No 386
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=36.80 E-value=2.5e+02 Score=29.34 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CC--CCC----------HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MP--CLS----------GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 94 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP--~md----------GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D 94 (687)
.+..+.+.+ ..+|.|.+.- .. +.+ .++++.+|++. .+.+|||.--+-.+.+.+.+++. ||+.
T Consensus 147 ~~~a~~l~~--aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~--~~~iPVianGgI~s~eda~~~l~-GaD~ 221 (350)
T 3b0p_A 147 AQSVEAMAE--AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGD--FPQLTFVTNGGIRSLEEALFHLK-RVDG 221 (350)
T ss_dssp HHHHHHHHH--TTCCEEEEECSCBC----------CCCCCHHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHT-TSSE
T ss_pred HHHHHHHHH--cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHh--CCCCeEEEECCcCCHHHHHHHHh-CCCE
Confidence 444556666 6788887764 32 112 37888999876 35899998888889999999998 9876
Q ss_pred EEe
Q 005631 95 FLV 97 (687)
Q Consensus 95 YL~ 97 (687)
..+
T Consensus 222 V~i 224 (350)
T 3b0p_A 222 VML 224 (350)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=36.76 E-value=11 Score=37.53 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=23.3
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ .|.+|+||+++|+.+...=...+-+||.++
T Consensus 7 Ivl-~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 7 IIL-TGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEE-EcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 445 899999999999999754222345666555
No 388
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=36.42 E-value=58 Score=32.88 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCcc-EEEEcc-CCCC---CHHHHHHHHHhhcCCC---CceEEEEecCCChHHHHHHHhC--CCCEEEe-
Q 005631 29 QAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRK---NLPVIMMSSLDSMGLVFKCLSK--GAVDFLV- 97 (687)
Q Consensus 29 eALe~L~~~~~~pD-LVLlDl-MP~m---dGleLL~~Ir~~~~~p---~iPVIvmTa~~d~~~av~Am~a--GA~DYL~- 97 (687)
+.++.+.+ . .+ ++++|+ --++ -.++++++|.+. .+ .+|||.=-+-.+++.+.++++. |+++.++
T Consensus 162 e~a~~~~~--~-a~~il~t~i~~dG~~~G~d~eli~~l~~~--~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg 236 (260)
T 2agk_A 162 DTFRELRK--Y-TNEFLIHAADVEGLCGGIDELLVSKLFEW--TKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFG 236 (260)
T ss_dssp HHHHHHTT--T-CSEEEEEC-------CCCCHHHHHHHHHH--HTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHH--h-cCEEEEEeeccccCcCCCCHHHHHHHHHh--hcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEee
Confidence 66666666 5 54 666676 3222 257899999876 23 8999988888899999999987 8888543
Q ss_pred -------CC-CCHHHHHHHHH
Q 005631 98 -------KP-IRKNELKNLWQ 110 (687)
Q Consensus 98 -------KP-~~~eeL~~~L~ 110 (687)
.| +.+.+++..++
T Consensus 237 ~al~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 237 SSLDIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp TTBGGGTCSSBCHHHHHHHHH
T ss_pred CCHHHcCCCCCCHHHHHHHHH
Confidence 44 77888776543
No 389
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=36.20 E-value=9.9 Score=36.10 Aligned_cols=19 Identities=5% Similarity=-0.155 Sum_probs=16.4
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
+.| .|++|+||+++++.|=
T Consensus 28 ~~l-~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 28 TEV-FGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEE-EESTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 555 6999999999999984
No 390
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=36.19 E-value=2e+02 Score=31.28 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=56.4
Q ss_pred HHHHHHHhC-CCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-----------CCCHHHHHHHHHhhcCCCCceEE
Q 005631 8 LLLLCFEIA-VMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-MP-----------CLSGVALLSKIMSHKTRKNLPVI 73 (687)
Q Consensus 8 ll~~lLe~~-G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-----------~mdGleLL~~Ir~~~~~p~iPVI 73 (687)
.++.+.+.. ++.+ +..+.+.++|..+.+ ..+|.|.+.. -. +...++++..+.+......+|||
T Consensus 268 ~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~---~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvi 344 (494)
T 1vrd_A 268 TLEMIKADYPDLPVVAGNVATPEGTEALIK---AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPII 344 (494)
T ss_dssp HHHHHHHHCTTSCEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHCCCceEEeCCcCCHHHHHHHHH---cCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEE
Confidence 344444443 4442 356788888865554 4689888732 11 12345555555543212479999
Q ss_pred EEecCCChHHHHHHHhCCCCEEEe
Q 005631 74 MMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 74 vmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.-.+-.+...+.+++.+||+....
T Consensus 345 a~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 345 ADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EECCcCCHHHHHHHHHcCCCEEEE
Confidence 998999999999999999887664
No 391
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=36.05 E-value=2.8e+02 Score=29.42 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=51.0
Q ss_pred CCeEEE-EeCCHHHHHHHHHhhCCCccEEEEccCCC------------CCHHHHHHHHHhhcCCCCceEEEEecCCChHH
Q 005631 17 VMKVIT-EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 83 (687)
Q Consensus 17 G~~~V~-~A~sg~eALe~L~~~~~~pDLVLlDlMP~------------mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~ 83 (687)
+..++. .+.+.++|..+++. ..|.|.+.+-|+ ...++++.++... .. |||.--+-.+...
T Consensus 141 ~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~---~~-PVIAdGGI~~~~d 213 (361)
T 3r2g_A 141 SRCIMAGNVATYAGADYLASC---GADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRA---DR-SIVADGGIKTSGD 213 (361)
T ss_dssp TCEEEEEEECSHHHHHHHHHT---TCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTS---SS-EEEEESCCCSHHH
T ss_pred CCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHh---CC-CEEEECCCCCHHH
Confidence 555444 48899998887764 689888754332 1234444444332 12 8998888889999
Q ss_pred HHHHHhCCCCEEEe
Q 005631 84 VFKCLSKGAVDFLV 97 (687)
Q Consensus 84 av~Am~aGA~DYL~ 97 (687)
+.+|+.+||+....
T Consensus 214 i~kALa~GAd~V~i 227 (361)
T 3r2g_A 214 IVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999987665
No 392
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=36.00 E-value=3.4e+02 Score=26.95 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=53.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe-CCCCHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPIRKN 103 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~-KP~~~e 103 (687)
...+.++.+.. ..+|.|++|+ =...+--++...++... ....+++|=+...+...+..+++.|++..++ |--+.+
T Consensus 28 ~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ 104 (256)
T 1dxe_A 28 SNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKE 104 (256)
T ss_dssp CSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred CCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHH
Confidence 45556677666 7899999999 33223333444444433 3457788888778888899999999876433 224688
Q ss_pred HHHHHHH
Q 005631 104 ELKNLWQ 110 (687)
Q Consensus 104 eL~~~L~ 110 (687)
+++.++.
T Consensus 105 ev~~~~~ 111 (256)
T 1dxe_A 105 EAELAVA 111 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8865543
No 393
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=35.99 E-value=59 Score=34.57 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhc--CCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPI 100 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~--~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~ 100 (687)
-+.++|+++++.. ..++|.+++- +| +-++.+++|++.- ....+||+.-= -.+...+.++++.|+.|+| .||.
T Consensus 212 ~~~~~ai~~~~~l-~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~ 287 (392)
T 3p3b_A 212 YNLNLTKEVLAAL-SDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDII 287 (392)
T ss_dssp CCHHHHHHHHHHT-TTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTT
T ss_pred CCHHHHHHHHHHH-HhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCcc
Confidence 3678999998873 4578889999 88 5677777777540 00257777644 5567788999999977766 5776
Q ss_pred CH
Q 005631 101 RK 102 (687)
Q Consensus 101 ~~ 102 (687)
..
T Consensus 288 ~~ 289 (392)
T 3p3b_A 288 WP 289 (392)
T ss_dssp TB
T ss_pred cc
Confidence 54
No 394
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=35.86 E-value=12 Score=34.49 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=21.1
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
|.+ +|..|+||+++|+.+-..-...+-++|..
T Consensus 3 I~l-~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 3 IAF-EGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEE-ECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 344 79999999999999854321123455544
No 395
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=35.83 E-value=12 Score=37.01 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=17.5
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|.+|+||+++|+.|..
T Consensus 25 I~I-~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 25 IGV-SGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 555 89999999999999865
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=35.78 E-value=10 Score=34.85 Aligned_cols=20 Identities=10% Similarity=-0.222 Sum_probs=16.8
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|++ +|..|+||.++|+.+-.
T Consensus 9 I~l-~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 9 VFV-LGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEE-EESTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 444 89999999999999854
No 397
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=35.48 E-value=1.9e+02 Score=30.70 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=60.7
Q ss_pred HHHHHHhCCCe-EEEEeCCHHHHHHHHHhhCCCccEEEEcc-C-C----CCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 9 LLLCFEIAVMK-VITEATNGLQAWKILEDLTNHIDLVLTEV-M-P----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 9 l~~lLe~~G~~-~V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-P----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
++.+-+..+.. +|..+.+.++|....+ ..+|.|++.- - . +...++++.+|++.- ...+|||.-.+-.+.
T Consensus 209 i~~lr~~~~~PvivK~v~~~e~A~~a~~---~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-~~~ipVia~GGI~~g 284 (352)
T 3sgz_A 209 LSLLQSITRLPIILKGILTKEDAELAMK---HNVQGIVVSNHGGRQLDEVSASIDALREVVAAV-KGKIEVYMDGGVRTG 284 (352)
T ss_dssp HHHHHHHCCSCEEEEEECSHHHHHHHHH---TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH-TTSSEEEEESSCCSH
T ss_pred HHHHHHhcCCCEEEEecCcHHHHHHHHH---cCCCEEEEeCCCCCccCCCccHHHHHHHHHHHh-CCCCeEEEECCCCCH
Confidence 33443433333 2566788888877765 4799888743 1 1 234578888887542 247999999999999
Q ss_pred HHHHHHHhCCCCEEEeC
Q 005631 82 GLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~K 98 (687)
..+++++.+||+...+=
T Consensus 285 ~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 285 TDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999987763
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=35.35 E-value=12 Score=35.74 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=17.2
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|.+|+||+++|+.+-.
T Consensus 7 I~i-~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VAL-TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEE-ECCTTSCHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 455 89999999999999954
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.35 E-value=12 Score=35.29 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=22.3
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++| .|++|+||+++++.|=..-...+++.+-++
T Consensus 25 ~~~i-~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 25 FIAL-TGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3556 799999999999887543333344444433
No 400
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=35.21 E-value=7.7 Score=40.41 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=23.0
Q ss_pred CCCCCCChhHHHHHhhhcCccc------CCCceecC
Q 005631 192 DQLAECPDSTCAQVIHSNAEIT------GSRRVPVT 221 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH~~S~R~------~~pFV~vn 221 (687)
+|+.|+||.++|+.+...-... .-+++.++
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 6999999999999997654332 34677777
No 401
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=35.14 E-value=1.7e+02 Score=29.52 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=45.8
Q ss_pred ccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Q 005631 41 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 41 pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr 114 (687)
.|++|+=. ..+.-|+.+++.+.. .+|||.. +.....+.+..|-..|+..|.+.++|...|.+++.
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a~-----G~PvI~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMAA-----GTAVVAS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHHH-----TCEEEEC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchHHHHHHHc-----CCCEEEe----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 45555532 244446677777653 5777753 22556677788889999999999999999988875
No 402
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=35.01 E-value=1.3e+02 Score=28.56 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=40.0
Q ss_pred CccEEEEcc---CCCC------CH---HHH-------HHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCC
Q 005631 40 HIDLVLTEV---MPCL------SG---VAL-------LSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 100 (687)
Q Consensus 40 ~pDLVLlDl---MP~m------dG---leL-------L~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~ 100 (687)
.+.+||+|+ |-+. .+ .++ ++.+++. .+++.|+|+.........+-+.|..+|+...-
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~----G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNA----GIEIAIITGRRSQIVENRMKALGISLIYQGQD 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHT----TCEEEEECSSCCHHHHHHHHHTTCCEEECSCS
T ss_pred CCCEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHC----CCEEEEEECcCHHHHHHHHHHcCCcEEeeCCC
Confidence 478999998 4330 11 123 7777765 68999999987766666666789998886543
Q ss_pred CH
Q 005631 101 RK 102 (687)
Q Consensus 101 ~~ 102 (687)
+.
T Consensus 100 ~k 101 (195)
T 3n07_A 100 DK 101 (195)
T ss_dssp SH
T ss_pred Cc
Confidence 33
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.51 E-value=10 Score=37.66 Aligned_cols=30 Identities=7% Similarity=0.044 Sum_probs=21.5
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
+++ .|.+|+||+++|+.|-..-. .+++.++
T Consensus 35 i~l-~G~~GsGKSTla~~L~~~l~---~~~~~~~ 64 (253)
T 2p5t_B 35 ILL-GGQSGAGKTTIHRIKQKEFQ---GNIVIID 64 (253)
T ss_dssp EEE-ESCGGGTTHHHHHHHHHHTT---TCCEEEC
T ss_pred EEE-ECCCCCCHHHHHHHHHHhcC---CCcEEEe
Confidence 455 79999999999999864322 2455555
No 404
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=34.43 E-value=14 Score=37.07 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=17.0
Q ss_pred ccccCCCCCCCChhHHHHHhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH 207 (687)
.|.| +|.+|+||+++|+.|-
T Consensus 11 ~i~i-~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAV-DGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEE-ECCTTSSHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHH
Confidence 3566 8999999999999983
No 405
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=34.38 E-value=68 Score=33.94 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=51.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIR 101 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~ 101 (687)
+.++|+++++.. ..+++.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|+| +||..
T Consensus 211 ~~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 283 (392)
T 2poz_A 211 TTDETIRFCRKI-GELDICFVEEPCDP-FDNGALKVISEQ---IPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGT 283 (392)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECCSCT-TCHHHHHHHHHH---CSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCc-ccHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccc
Confidence 678888888763 3578888888 764 347778888876 36887754444567889999999977766 57754
No 406
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=34.36 E-value=13 Score=34.77 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=17.6
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|++ .|..|+||.++|+.+-..
T Consensus 7 I~i-~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 7 IAF-EGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH
T ss_pred EEE-EcCCCCCHHHHHHHHHHH
Confidence 445 899999999999999653
No 407
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.28 E-value=13 Score=35.02 Aligned_cols=30 Identities=10% Similarity=-0.020 Sum_probs=21.6
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ +|..|+||+++|+.+-.. .+-+||.++
T Consensus 23 I~l-~G~~GsGKST~a~~La~~---l~~~~i~~d 52 (201)
T 2cdn_A 23 VLL-LGPPGAGKGTQAVKLAEK---LGIPQISTG 52 (201)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH---HTCCEEEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---hCCcEEehh
Confidence 555 799999999999998542 234566543
No 408
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=34.27 E-value=3.6e+02 Score=29.55 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=58.8
Q ss_pred HHHHHHHHhC-CCeE-EEEeCCHHHHHHHHHhhCCCccEEEEccCC------------CCCHHHHHHHHHhhcCCCCceE
Q 005631 7 MLLLLCFEIA-VMKV-ITEATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRKNLPV 72 (687)
Q Consensus 7 ~ll~~lLe~~-G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDlMP------------~mdGleLL~~Ir~~~~~p~iPV 72 (687)
.+++.+.+.. +..+ +..+.+.++|..++. ...|.|.+-+=| +...++++..+.+.-....+||
T Consensus 259 ~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~---aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPV 335 (490)
T 4avf_A 259 ERVRWVKQTFPDVQVIGGNIATAEAAKALAE---AGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPL 335 (490)
T ss_dssp HHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCE
T ss_pred HHHHHHHHHCCCceEEEeeeCcHHHHHHHHH---cCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcE
Confidence 3444444443 4443 334788888877765 468988873211 1234566666665321247999
Q ss_pred EEEecCCChHHHHHHHhCCCCEEEeC
Q 005631 73 IMMSSLDSMGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 73 IvmTa~~d~~~av~Am~aGA~DYL~K 98 (687)
|.--+-.+.+.+.+|+.+||+...+=
T Consensus 336 Ia~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 336 IADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp EEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred EEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 99888889999999999999887664
No 409
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=34.11 E-value=1.9e+02 Score=29.22 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=58.7
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHhhCC-CccEEEEcc--CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 13 FEIAVMKVITEATNGLQAWKILEDLTN-HIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 13 Le~~G~~~V~~A~sg~eALe~L~~~~~-~pDLVLlDl--MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
.+..|..++..+.+.+|+...+. . .+|+|-+.. +-.. ..++...+|...- .+++++|.-++-.+.+.+.+++
T Consensus 146 a~~lGl~~lvEv~~~eE~~~A~~---l~g~~iIGinnr~l~t~~~d~~~~~~l~~~i-p~~~~vIaEsGI~t~edv~~~~ 221 (251)
T 1i4n_A 146 AEELGMDSLVEVHSREDLEKVFS---VIRPKIIGINTRDLDTFEIKKNVLWELLPLV-PDDTVVVAESGIKDPRELKDLR 221 (251)
T ss_dssp HHTTTCEEEEEECSHHHHHHHHT---TCCCSEEEEECBCTTTCCBCTTHHHHHGGGS-CTTSEEEEESCCCCGGGHHHHT
T ss_pred HHHcCCeEEEEeCCHHHHHHHHh---cCCCCEEEEeCcccccCCCCHHHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHH
Confidence 34579999999999999877654 5 789887765 4321 1245555555441 2457777778888899999999
Q ss_pred hCCCCEEEeC
Q 005631 89 SKGAVDFLVK 98 (687)
Q Consensus 89 ~aGA~DYL~K 98 (687)
+. |+.||+=
T Consensus 222 ~~-a~avLVG 230 (251)
T 1i4n_A 222 GK-VNAVLVG 230 (251)
T ss_dssp TT-CSEEEEC
T ss_pred Hh-CCEEEEc
Confidence 99 9999874
No 410
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.88 E-value=13 Score=36.39 Aligned_cols=20 Identities=15% Similarity=-0.084 Sum_probs=17.0
Q ss_pred ccccCCCCCCCChhHHHHHhh
Q 005631 187 HMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH 207 (687)
.+.| .|.+|+||+++++.|-
T Consensus 29 ~i~l-~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVI-LGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEE-ECCTTSSHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHH
Confidence 3555 6999999999999985
No 411
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=33.80 E-value=1.1e+02 Score=32.54 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCCCCH-HHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~mdG-leLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+.++.+.+ ..+|+|.+|. ...... ++.+++|++. + .+|||+-. -.+.+.+..++++||+-..+
T Consensus 107 ~e~a~~l~e--aGad~I~ld~a~G~~~~~~~~i~~i~~~--~-~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSK--M-NIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHH--TTCSEEEECCSCCSBHHHHHHHHHHHHH--C-CCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCcCeEEEeCCCCCcHHHHHHHHHHHHh--c-CCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 555566655 6799999998 543333 4677888776 3 67887622 25688999999999987776
No 412
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=33.78 E-value=77 Score=32.88 Aligned_cols=53 Identities=8% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 56 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 56 eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
+.++++|+. .+..+|.+ .-.+.+.+.+|+++||+-.+..-+++++|+..++.+
T Consensus 187 ~Av~~ar~~--~~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 187 KAVTKAKKL--DSNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHH--CTTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhh--CCCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 577777776 36788777 445679999999999999999999999998887643
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.75 E-value=13 Score=34.92 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=22.2
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.++| .|++|+||.++|..|=. ..+.+.+-++
T Consensus 22 ~~~i-~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 22 LTQV-YGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred EEEE-ECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 3566 79999999999998865 3344544444
No 414
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=33.62 E-value=2.8e+02 Score=28.65 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEeCCHHHHHHHHHhhCCCccEEEEcc--CCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCh-------------HHHH
Q 005631 22 TEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSM-------------GLVF 85 (687)
Q Consensus 22 ~~A~sg~eALe~L~~~~~~pDLVLlDl--MP~md-GleLL~~Ir~~~~~p~iPVIvmTa~~d~-------------~~av 85 (687)
.++.+.+.|+...+. ..=-|=|+|- .++.. ++.+++.+++. ..+||.+|.....- +.+.
T Consensus 44 vc~~s~~~a~~A~~g--GAdRIELc~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~ 118 (287)
T 3iwp_A 44 VCVDSVESAVNAERG--GADRIELCSGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEVMKADIR 118 (287)
T ss_dssp EEESSHHHHHHHHHH--TCSEEEECBCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHh--CCCEEEECCCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHHHHHHHH
Q ss_pred HHHhCCCCEEEeC---C---CCHHHHHHHHHHH
Q 005631 86 KCLSKGAVDFLVK---P---IRKNELKNLWQHV 112 (687)
Q Consensus 86 ~Am~aGA~DYL~K---P---~~~eeL~~~L~~a 112 (687)
.+.++||+.+..= | ++.+.++..|..+
T Consensus 119 ~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 119 LAKLYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp HHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=33.52 E-value=13 Score=37.45 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.0
Q ss_pred CCccccCCCCCCCChhHHHHHhhh
Q 005631 185 PRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 185 ~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
...|.| +|.+|+||+++++.|-.
T Consensus 48 g~~i~l-~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYL-VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEE-ECSTTSCHHHHHHHHHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHH
Confidence 455666 79999999999999854
No 416
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=33.51 E-value=76 Score=31.90 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCccEEEEcc-C--CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHH
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-M--PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKN 103 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-M--P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~e 103 (687)
.++++.+.+ ...|+|.+-. - --.+.++++++||+ ..+|||+|+.... .+..|++.||+--+..+
T Consensus 23 ~~~~~~l~~--~GaD~ielG~S~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~n------~i~~G~dg~iiPdLp~e 89 (240)
T 1viz_A 23 DEQLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRR----FLVPCVLEVSAIE------AIVPGFDLYFIPSVLNS 89 (240)
T ss_dssp HHHHHHHHT--SCCSEEEECC----CHHHHHHHHHHHTT----SSSCEEEECSCGG------GCCSCCSEEEEEEETTB
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhhC----cCCCEEEecCccc------cccCCCCEEEEcccCcc
Confidence 567777777 7789999876 2 22225667777764 4899999999832 12789999998654433
No 417
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=33.50 E-value=1.5e+02 Score=30.52 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=49.0
Q ss_pred HHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHH
Q 005631 28 LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 107 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~ 107 (687)
++..+++.. .|++|+=...+.-|+-+++.+. ..+|||.. ... ...+.+..|...|+..|.+.++|..
T Consensus 317 ~~~~~~~~~----adv~v~ps~~e~~~~~~~Eama-----~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~ 383 (438)
T 3c48_A 317 SELVAVYRA----ADIVAVPSFNESFGLVAMEAQA-----SGTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWAD 383 (438)
T ss_dssp HHHHHHHHH----CSEEEECCSCCSSCHHHHHHHH-----TTCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHH
T ss_pred HHHHHHHHh----CCEEEECccccCCchHHHHHHH-----cCCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHH
Confidence 445555544 5665552233445777777764 36787764 332 3444566788899999999999999
Q ss_pred HHHHHHH
Q 005631 108 LWQHVWR 114 (687)
Q Consensus 108 ~L~~alr 114 (687)
.|..++.
T Consensus 384 ~i~~l~~ 390 (438)
T 3c48_A 384 ALATLLD 390 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9988875
No 418
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=33.42 E-value=8.9 Score=40.86 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=0.0
Q ss_pred cccCCCCc--cchhhh
Q 005631 644 TERCFRKK--VRYQSR 657 (687)
Q Consensus 644 ~~r~~~k~--iry~~r 657 (687)
+.-||-+| |-|..|
T Consensus 320 ~~~~~~~~~~~~~~~~ 335 (358)
T 2pk2_A 320 CQLCFLRSLGIDYLDA 335 (358)
T ss_dssp ----------------
T ss_pred cHHHhccccceeeecc
Confidence 45688887 778544
No 419
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=33.39 E-value=16 Score=38.01 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=22.4
Q ss_pred hhhcCCCCccccCCCCCCCChhHHHHHhhh
Q 005631 179 AVEVDSPRHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 179 ~~ea~S~~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
-+.++....|.| .|++|+||++++++|-.
T Consensus 120 sl~i~~Ge~vaI-vGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 120 LKGIPKKNCLAF-IGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHTCTTCSEEEE-ECSSSSSHHHHHHHHHH
T ss_pred eEEecCCCEEEE-ECCCCCcHHHHHHHHhh
Confidence 344566666777 69999999999998853
No 420
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=33.39 E-value=12 Score=34.85 Aligned_cols=20 Identities=5% Similarity=-0.190 Sum_probs=17.2
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.+ +|.+|+||+++|+.+-.
T Consensus 15 I~l-~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 15 IFI-IGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEE-EECTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 555 89999999999999864
No 421
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=33.37 E-value=14 Score=34.37 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=16.9
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| .|.+|+||+++|+.+..
T Consensus 3 I~i-~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAI-FGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEE-ECCTTSCHHHHHHHHHH
T ss_pred EEE-ECCCccCHHHHHHHHHH
Confidence 344 79999999999999865
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=33.16 E-value=16 Score=38.75 Aligned_cols=30 Identities=3% Similarity=-0.188 Sum_probs=23.4
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| .|+||+||..+|..|= .+.+..||..|
T Consensus 43 IvI-~GPTgsGKTtLa~~LA---~~l~~eiIs~D 72 (339)
T 3a8t_A 43 LVL-MGATGTGKSRLSIDLA---AHFPLEVINSD 72 (339)
T ss_dssp EEE-ECSTTSSHHHHHHHHH---TTSCEEEEECC
T ss_pred EEE-ECCCCCCHHHHHHHHH---HHCCCcEEccc
Confidence 444 7999999999999874 45556777777
No 423
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=33.07 E-value=3.5e+02 Score=28.17 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-C------CCCC--HHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-M------PCLS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-M------P~md--GleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
+..+..+.|.+ ..+|+|-+-. . +... -++++++|++. -.+|||..-+..+.+.+.++++.|..|++
T Consensus 230 ~~~~la~~L~~--~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~---~~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 230 DYVPYAKRMKE--QGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRRE---ADIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp GHHHHHHHHHH--TTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH---TTCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHH--cCCCEEEEecCCccCCCCCCCccccHHHHHHHHHH---cCCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 34555566666 5688766532 1 1122 36788999887 37999988888899999999999955554
Q ss_pred e
Q 005631 97 V 97 (687)
Q Consensus 97 ~ 97 (687)
.
T Consensus 305 ~ 305 (340)
T 3gr7_A 305 F 305 (340)
T ss_dssp E
T ss_pred E
Confidence 3
No 424
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=33.01 E-value=12 Score=35.63 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.5
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|.| +|.+|+||+++++.|...
T Consensus 25 i~i-~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 25 LGI-DGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEE-EECTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 455 899999999999998653
No 425
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=32.98 E-value=13 Score=39.01 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=23.2
Q ss_pred ccccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 187 HMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 187 ~Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
.||| +|+||+||+++|-.+.. ++..||+-|
T Consensus 149 gvli-~G~sG~GKStlal~l~~----~G~~lv~DD 178 (312)
T 1knx_A 149 GVLL-TGRSGIGKSECALDLIN----KNHLFVGDD 178 (312)
T ss_dssp EEEE-EESSSSSHHHHHHHHHT----TTCEEEEEE
T ss_pred EEEE-EcCCCCCHHHHHHHHHH----cCCEEEeCC
Confidence 4788 89999999988887765 335678755
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=32.81 E-value=14 Score=34.14 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=20.0
Q ss_pred CCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 192 DQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 192 ~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
+|..|+||+++|+.+-..=...+-+++..
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 79999999999999865432224455543
No 427
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=32.64 E-value=1.1e+02 Score=30.29 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHH
Q 005631 9 LLLCFEIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 87 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~A 87 (687)
+...|...+.-.|....+.+++++.++.. ..--+=++.+ +-..++.+.++.|++. ++.+-|..=|-. +.+.+..|
T Consensus 10 ~~~~l~~~~ii~vir~~~~~~~~~~~~al-~~gGv~~iel~~k~~~~~~~i~~l~~~--~~~l~vgaGtvl-~~d~~~~A 85 (224)
T 1vhc_A 10 IIEKLRELKIVPVIALDNADDILPLADTL-AKNGLSVAEITFRSEAAADAIRLLRAN--RPDFLIAAGTVL-TAEQVVLA 85 (224)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHH-HHTTCCEEEEETTSTTHHHHHHHHHHH--CTTCEEEEESCC-SHHHHHHH
T ss_pred HHHHHHHCCeEEEEeCCCHHHHHHHHHHH-HHcCCCEEEEeccCchHHHHHHHHHHh--CcCcEEeeCcEe-eHHHHHHH
Q ss_pred HhCCCCEEEeCCCCHHHHHHHHHH
Q 005631 88 LSKGAVDFLVKPIRKNELKNLWQH 111 (687)
Q Consensus 88 m~aGA~DYL~KP~~~eeL~~~L~~ 111 (687)
+..|| ||+.-|-...++....++
T Consensus 86 ~~aGA-d~v~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 86 KSSGA-DFVVTPGLNPKIVKLCQD 108 (224)
T ss_dssp HHHTC-SEEECSSCCHHHHHHHHH
T ss_pred HHCCC-CEEEECCCCHHHHHHHHH
No 428
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=32.27 E-value=2.1e+02 Score=30.20 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred HHHHHHhCCCeE-EEEeCCHHHHHHHHHhhCCCccEEEEcc-C-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 9 LLLCFEIAVMKV-ITEATNGLQAWKILEDLTNHIDLVLTEV-M-----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 9 l~~lLe~~G~~~-V~~A~sg~eALe~L~~~~~~pDLVLlDl-M-----P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
++.+-+..+..+ |..+.+.++|....+ ..+|.|.+.- - -+..-++++.+|++.- ...+|||.-.+-.+.
T Consensus 221 i~~lr~~~~~PvivK~v~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GGI~~g 296 (368)
T 2nli_A 221 IEEIAGHSGLPVFVKGIQHPEDADMAIK---RGASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSGVRRG 296 (368)
T ss_dssp HHHHHHHSSSCEEEEEECSHHHHHHHHH---TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSSCCSH
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHHH---cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECCCCCH
Confidence 344444334332 445678888876655 4689888742 1 1234578888887652 236999999999999
Q ss_pred HHHHHHHhCCCCEEEeC
Q 005631 82 GLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~K 98 (687)
..+.+++.+||+...+=
T Consensus 297 ~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 297 EHVAKALASGADVVALG 313 (368)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999988764
No 429
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=32.25 E-value=12 Score=34.54 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=21.0
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|+| +|..|+||.++|+.+-. +.+-+||..+
T Consensus 12 I~l-~G~~GsGKsT~~~~La~---~l~~~~i~~d 41 (196)
T 2c95_A 12 IFV-VGGPGSGKGTQCEKIVQ---KYGYTHLSTG 41 (196)
T ss_dssp EEE-EECTTSSHHHHHHHHHH---HHCCEEEEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH---HhCCeEEcHH
Confidence 455 89999999999999853 2233555443
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=32.21 E-value=11 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=12.5
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
+.| +|++|+||+++++.|-
T Consensus 30 i~l-~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 30 LVL-SSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEE-ECSCC----CHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 444 7999999999999986
No 431
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=32.17 E-value=9.6 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHHHhhcc---------cCCCCccchhhhhhhhhhCC
Q 005631 624 IDKNKFADREAAVTKYRQKKTE---------RCFRKKVRYQSRKRLAEQRP 665 (687)
Q Consensus 624 ~~~~~~~~r~~~~~r~~~kr~~---------r~~~k~iry~~rk~~a~~r~ 665 (687)
.+....++..+.|..|-..+-. .+|+.=+.|. +.+++-.+
T Consensus 96 ~gE~~~~~i~~~v~~~i~~~lpg~~a~~~al~L~~rYl~Yk--~AL~~L~~ 144 (332)
T 2es4_D 96 QGELTPAALDALVRREIAAQLDGSPAQAEALGVWRRYRAYF--DALAQLPG 144 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--HTTC----
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH--HHHHhccc
Confidence 3455677788888777766542 3666555553 44444443
No 432
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=32.15 E-value=1.1e+02 Score=32.11 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCC
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIR 101 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~ 101 (687)
-+.++|+++++.. ..+++.+++- +|.. .++.+.+|++. ..+||+.==.-.+...+.++++.|+.|++ .||..
T Consensus 194 ~~~~~a~~~~~~L-~~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~ 267 (354)
T 3jva_A 194 WTPKDAVKAIQAL-ADYQIELVEQPVKRR-DLEGLKYVTSQ---VNTTIMADESCFDAQDALELVKKGTVDVINIKLMK 267 (354)
T ss_dssp SCHHHHHHHHHHT-TTSCEEEEECCSCTT-CHHHHHHHHHH---CSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCEEECCCChh-hHHHHHHHHHh---CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchh
Confidence 4678898888773 3578888888 7643 36777888876 46787764444567788899988765554 67643
No 433
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=31.86 E-value=15 Score=36.28 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=20.4
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+....-+.| .|++|+||+++.++|--.
T Consensus 28 i~~Ge~~~i-iG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSI-MGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEE-ECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEE-ECCCCCcHHHHHHHHhcC
Confidence 444445666 699999999999999543
No 434
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=31.85 E-value=1.7e+02 Score=29.66 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=51.4
Q ss_pred HHHHHHHhCCC--eEEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHH----HHHhhcCCCCceEEEEecCCCh
Q 005631 8 LLLLCFEIAVM--KVITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLS----KIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 8 ll~~lLe~~G~--~~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~----~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
.++.+-+..+. .+...+.+.+++.+.+.. ..|.|.+|.|. .+.++ .++.. +|++||+.. +--+.
T Consensus 171 ai~~~r~~~~~~~~i~vev~tlee~~~A~~a---GaD~I~ld~~~----~~~l~~~v~~l~~~--~~~~~i~As-GGI~~ 240 (273)
T 2b7n_A 171 FLTHARKNLPFTAKIEIECESFEEAKNAMNA---GADIVMCDNLS----VLETKEIAAYRDAH--YPFVLLEAS-GNISL 240 (273)
T ss_dssp HHHHHGGGSCTTCCEEEEESSHHHHHHHHHH---TCSEEEEETCC----HHHHHHHHHHHHHH--CTTCEEEEE-SSCCT
T ss_pred HHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEECCCC----HHHHHHHHHHhhcc--CCCcEEEEE-CCCCH
Confidence 33444444443 445688999998888875 59999999731 33333 33332 466776654 54578
Q ss_pred HHHHHHHhCCCCEEE
Q 005631 82 GLVFKCLSKGAVDFL 96 (687)
Q Consensus 82 ~~av~Am~aGA~DYL 96 (687)
+.+.+.++.||+-+-
T Consensus 241 ~ni~~~~~aGaD~i~ 255 (273)
T 2b7n_A 241 ESINAYAKSGVDAIS 255 (273)
T ss_dssp TTHHHHHTTTCSEEE
T ss_pred HHHHHHHHcCCcEEE
Confidence 899999999995543
No 435
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=31.82 E-value=1.5e+02 Score=31.07 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-C--------CCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-M--------PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-M--------P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.++++++++.+...+|+|-+.. . +..--++++++|++. -.+|||..-...+.+.+.++++.|..|++.
T Consensus 229 ~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 229 IDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKR---CNIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH---HTCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhhccccEEeccCCceEeeeecccCceeehHHHHHHHh---cCcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 5666655543322288776632 1 111236788899876 368999888888999999999999777764
No 436
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=31.81 E-value=4.5e+02 Score=27.56 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=47.3
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 95 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY 95 (687)
+...+.+.+|+.+.+.. .+|+|.+|-|+ .+.++++.+.- .+.+ .|..|+--+.+.+.+....|++-|
T Consensus 234 IeVEVdtldea~eAl~a---GaD~I~LDn~~----~~~l~~av~~l-~~~v-~ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 234 VEVETETLAELEEAISA---GADIIMLDNFS----LEMMREAVKIN-AGRA-ALENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp EEEEESSHHHHHHHHHT---TCSEEEEESCC----HHHHHHHHHHH-TTSS-EEEEESSCCHHHHHHHHTTTCSEE
T ss_pred EEEEECCHHHHHHHHHc---CCCEEEECCCC----HHHHHHHHHHh-CCCC-eEEEECCCCHHHHHHHHHcCCCEE
Confidence 45689999999998875 68999999732 24444444331 1344 566788888999998889998544
No 437
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=31.78 E-value=15 Score=34.44 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=16.4
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|++ +|..|+||+++|+.+-
T Consensus 18 I~l-~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 18 IFV-LGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEE-ECSTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 455 8999999999999885
No 438
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=31.70 E-value=13 Score=34.97 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.+ +|..|+||+++|+.+-.
T Consensus 13 I~l-~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 13 IVF-EGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEE-EESTTSSHHHHHHHHHH
T ss_pred EEE-EcCCCCCHHHHHHHHHH
Confidence 455 89999999999999854
No 439
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=31.69 E-value=20 Score=37.04 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.3
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
+|+ +|+.||||..+|+++=
T Consensus 27 ~L~-~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 27 LLI-QALPGMGDDALIYALS 45 (334)
T ss_dssp EEE-ECCTTSCHHHHHHHHH
T ss_pred EEE-ECCCCchHHHHHHHHH
Confidence 566 8999999999998873
No 440
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=31.68 E-value=62 Score=31.36 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=50.7
Q ss_pred eCCHHHHHHHHHhhCCCccEEEEcc-CCC--CCHHHHHHHHHhhcCCCCceEEEEec-CCC-hHHHHHHHhCCCCEEEeC
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIMMSS-LDS-MGLVFKCLSKGAVDFLVK 98 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLlDl-MP~--mdGleLL~~Ir~~~~~p~iPVIvmTa-~~d-~~~av~Am~aGA~DYL~K 98 (687)
..+.++++++++.....+| ++++ +|- ..|+++++.||+. +++.||++..- .+. ...+..+.++||+-..+-
T Consensus 15 ~~~~~~~~~~~~~~~~~vd--~ie~g~~~~~~~G~~~i~~lr~~--~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh 90 (218)
T 3jr2_A 15 QTNLTDAVAVASNVASYVD--VIEVGTILAFAEGMKAVSTLRHN--HPNHILVCDMKTTDGGAILSRMAFEAGADWITVS 90 (218)
T ss_dssp CSSHHHHHHHHHHHGGGCS--EEEECHHHHHHHTTHHHHHHHHH--CTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHhcCCce--EEEeCcHHHHhcCHHHHHHHHHh--CCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEe
Confidence 4578899999886323345 4566 542 3578999999987 45667764321 122 235677888999766555
Q ss_pred CCCHHH-HHHHHH
Q 005631 99 PIRKNE-LKNLWQ 110 (687)
Q Consensus 99 P~~~ee-L~~~L~ 110 (687)
....++ +...++
T Consensus 91 ~~~~~~~~~~~~~ 103 (218)
T 3jr2_A 91 AAAHIATIAACKK 103 (218)
T ss_dssp TTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 454443 444443
No 441
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=31.51 E-value=52 Score=26.76 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.1
Q ss_pred CCccchhhhhhhhhhCCC-cccceeccc
Q 005631 649 RKKVRYQSRKRLAEQRPR-IRGQFVRQT 675 (687)
Q Consensus 649 ~k~iry~~rk~~a~~r~r-~~g~f~~~~ 675 (687)
.|+.-|+||-..|-.||| --|||....
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 466789999999999999 678998754
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=31.51 E-value=15 Score=36.87 Aligned_cols=20 Identities=15% Similarity=-0.026 Sum_probs=17.2
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|++ .|.+|+||+++|+.|-.
T Consensus 5 I~l-~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILT-IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEE-ECCTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 445 89999999999999965
No 443
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=31.46 E-value=16 Score=34.74 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=16.1
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
+.| .|++|+||+++.+.|-
T Consensus 7 i~l-vGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 7 VVL-SGPSGAGKSTLLKKLF 25 (198)
T ss_dssp EEE-ECCTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 445 6999999999999884
No 444
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=31.38 E-value=15 Score=35.10 Aligned_cols=22 Identities=0% Similarity=-0.207 Sum_probs=17.6
Q ss_pred CccccCCCCCCCChhHHHHHhhh
Q 005631 186 RHMSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 186 ~~Vli~~GEsGTGKEl~AraIH~ 208 (687)
..++| .|++|+||+++|+.|=.
T Consensus 25 ~~~~i-~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEM-FGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEE-ECCTTSSHHHHHHHHHH
T ss_pred eEEEE-ECCCCCcHHHHHHHHHH
Confidence 33566 79999999999988754
No 445
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=31.33 E-value=1.9e+02 Score=29.57 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=33.3
Q ss_pred CCceEEEEecCC--ChHHHHHHHhCCCCEEEeCCC--CHHHHHHHHHHH
Q 005631 68 KNLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 112 (687)
Q Consensus 68 p~iPVIvmTa~~--d~~~av~Am~aGA~DYL~KP~--~~eeL~~~L~~a 112 (687)
+.+-+|+++... -.+.+.+|+++|..=|+.||+ +.++....++.+
T Consensus 81 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 129 (340)
T 1zh8_A 81 GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS 129 (340)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 456666665533 357899999999999999996 778877766544
No 446
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=31.32 E-value=1.6e+02 Score=29.85 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=58.9
Q ss_pred CHHHHHHHHHhh--CCCccEEEEcc--C-CCCCHHHHHHHHHhhcCCCCceEEEEecCCC----hHHHHHHHhCCCCEEE
Q 005631 26 NGLQAWKILEDL--TNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVIMMSSLDS----MGLVFKCLSKGAVDFL 96 (687)
Q Consensus 26 sg~eALe~L~~~--~~~pDLVLlDl--M-P~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d----~~~av~Am~aGA~DYL 96 (687)
+..+.++.+... -...-||++|- + ...++.+.|..+-+.+ .+++.+|+++..-+ ...+..++..-+.-|-
T Consensus 60 ~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~ 138 (343)
T 1jr3_D 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT 138 (343)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEE
T ss_pred CHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEE
Confidence 455555544321 13456888887 6 6667777555544443 35677777765433 3467888887777888
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q 005631 97 VKPIRKNELKNLWQHVWRR 115 (687)
Q Consensus 97 ~KP~~~eeL~~~L~~alr~ 115 (687)
.+|++..+|...|.+.++.
T Consensus 139 ~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHHHHHH
Confidence 8999999999888877654
No 447
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=31.27 E-value=1.4e+02 Score=32.63 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
.+..+.++.+.+ ..+|.|.++. .... .-++++++|++. ++.+|||+= .-.+.+.+..+.++||+.+.+
T Consensus 236 ~~~~~~a~~l~~--aGvd~v~i~~~~G~~~~~~e~i~~i~~~--~p~~pvi~g-~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 236 PETMERVEKLVK--AGVDVIVIDTAHGHSRRVIETLEMIKAD--YPDLPVVAG-NVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp TTHHHHHHHHHH--TTCSEEEECCSCCSSHHHHHHHHHHHHH--CTTSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HhHHHHHHHHHH--hCCCEEEEEecCCchHHHHHHHHHHHHH--CCCceEEeC-CcCCHHHHHHHHHcCCCEEEE
Confidence 344566666666 6799999988 5322 367889999987 567888763 345678889999999887776
No 448
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=31.05 E-value=16 Score=36.17 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=20.2
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhh
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.+.....+.| .|++|+||+++.++|=
T Consensus 27 ~i~~Ge~~~i-~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 27 SIPEGALVAV-VGQVGCGKSSLLSALL 52 (237)
T ss_dssp EECTTCEEEE-ECSTTSSHHHHHHHHT
T ss_pred EECCCCEEEE-ECCCCCCHHHHHHHHh
Confidence 3445555666 6999999999999984
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=31.04 E-value=16 Score=35.16 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=16.9
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|..|+||+++|+.+-.
T Consensus 15 Igl-tG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 15 IGV-TGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 344 89999999999999854
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=30.96 E-value=16 Score=39.27 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=17.2
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
++++.|.+|+||+++|+.+-.
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 444489999999999999743
No 451
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=30.94 E-value=67 Score=33.18 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=43.2
Q ss_pred CCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHH
Q 005631 39 NHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 112 (687)
Q Consensus 39 ~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~--~eeL~~~L~~a 112 (687)
..+|+||+|++|. +|...+...+... + .+.+.+.++-|.-.|+.|=|. -.+....+..+
T Consensus 139 ~~~DlVlsD~apn-sG~~~~D~~rs~~----L----------L~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~l 199 (277)
T 3evf_A 139 VKCDTLLCDIGES-SSSSVTEGERTVR----V----------LDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELL 199 (277)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHH----H----------HHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHH
T ss_pred CCccEEEecCccC-cCchHHHHHHHHH----H----------HHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHH
Confidence 5799999999777 8887777776542 1 678889999886689999888 44444444443
No 452
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=30.82 E-value=1.2e+02 Score=29.58 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=50.1
Q ss_pred eCCHHHHHHHHHhhCCCcc-EEEEcc-CC---CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 24 ATNGLQAWKILEDLTNHID-LVLTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pD-LVLlDl-MP---~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
..+..+..+.+.+ ...| |.+.|. .. ...-+++++.|+ . ..+|||+..+-.+.+.+.+++..||+..+.
T Consensus 29 ~~~~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~---~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 29 EKDPVELVEKLIE--EGFTLIHVVDLSNAIENSGENLPVLEKLS-E---FAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp SSCHHHHHHHHHH--TTCCCEEEEEHHHHHHCCCTTHHHHHHGG-G---GGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred CcCHHHHHHHHHH--cCCCEEEEecccccccCCchhHHHHHHHH-h---cCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4577777777776 5565 556675 31 223367777776 4 479999999999999999999999887665
No 453
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=30.78 E-value=85 Score=33.17 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhhCCCc-cEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCCH
Q 005631 26 NGLQAWKILEDLTNHI-DLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIRK 102 (687)
Q Consensus 26 sg~eALe~L~~~~~~p-DLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~~ 102 (687)
+.++|+++++.. ..+ ++.+++- +|. +.++.+++|++. -.+||+.-=...+...+.++++.|+.|++ .||...
T Consensus 196 ~~~~a~~~~~~l-~~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 270 (382)
T 2gdq_A 196 DAAAAFKWERYF-SEWTNIGWLEEPLPF-DQPQDYAMLRSR---LSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHV 270 (382)
T ss_dssp CHHHHHTTHHHH-TTCSCEEEEECCSCS-SCHHHHHHHHTT---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTT
T ss_pred CHHHHHHHHHHH-hhccCCeEEECCCCc-ccHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCcccc
Confidence 578888877663 346 8888888 764 457778888865 36887765445568899999999877665 577654
Q ss_pred HHHH
Q 005631 103 NELK 106 (687)
Q Consensus 103 eeL~ 106 (687)
-=|.
T Consensus 271 GGit 274 (382)
T 2gdq_A 271 NGID 274 (382)
T ss_dssp THHH
T ss_pred CCHH
Confidence 3443
No 454
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=30.74 E-value=1.1e+02 Score=29.81 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHH
Q 005631 31 WKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 88 (687)
Q Consensus 31 Le~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am 88 (687)
+|.|.. .+|||||... .. .-++.++|++. .+||+++....+.+.+.+.+
T Consensus 52 ~E~i~~--l~PDlIi~~~~~~---~~~~~~~L~~~----gipvv~~~~~~~~~~~~~~i 101 (255)
T 3md9_A 52 AEGILA--MKPTMLLVSELAQ---PSLVLTQIASS----GVNVVTVPGQTTPESVAMKI 101 (255)
T ss_dssp HHHHHT--TCCSEEEEETTCS---CHHHHHHHHHT----TCEEEEECCCCSHHHHHHHH
T ss_pred HHHHHc--cCCCEEEEcCCcC---chhHHHHHHHc----CCcEEEeCCCCCHHHHHHHH
Confidence 455555 6788888765 31 13455666543 57888776444444444443
No 455
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=30.62 E-value=70 Score=34.72 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+..+|+++++.. ..+++.+++- +|.. -++.+++|++. ..+||+.==.-.+...+.++++.|+.|+|.
T Consensus 215 t~~~A~~~~~~L-e~~~i~~iEeP~~~~-~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~ 282 (433)
T 3rcy_A 215 TTAGAIRLGQAI-EPYSPLWYEEPVPPD-NVGAMAQVARA---VRIPVATGERLTTKAEFAPVLREGAAAILQ 282 (433)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTT-CHHHHHHHHHH---SSSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred CHHHHHHHHHHh-hhcCCCEEECCCChh-hHHHHHHHHhc---cCCCEEecCCCCCHHHHHHHHHcCCCCEEE
Confidence 678888776653 2467777888 7743 36778888876 468877654556788999999999888875
No 456
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=30.44 E-value=17 Score=40.75 Aligned_cols=24 Identities=4% Similarity=-0.179 Sum_probs=18.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAE 211 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~ 211 (687)
+++++|.+|+||+++|+++-..=.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHT
T ss_pred EEEecccCCCCHHHHHHHHHHHHH
Confidence 444489999999999999865433
No 457
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=30.31 E-value=2.1e+02 Score=30.54 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=55.4
Q ss_pred EEEeCCHHHHHHHHHhhCCCccEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCE
Q 005631 21 ITEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 94 (687)
Q Consensus 21 V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP-----~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~D 94 (687)
|..+.+.++|....+ ..+|.|++.- -. +..-++++.++++.- ...+|||+-.+-.+...+++++.+||+.
T Consensus 257 vKgv~~~e~A~~a~~---aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av-~~~ipVia~GGI~~g~Dv~kalalGAd~ 332 (392)
T 2nzl_A 257 AKGILRGDDAREAVK---HGLNGILVSNHGARQLDGVPATIDVLPEIVEAV-EGKVEVFLDGGVRKGTDVLKALALGAKA 332 (392)
T ss_dssp EEEECCHHHHHHHHH---TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH-TTSSEEEECSSCCSHHHHHHHHHTTCSE
T ss_pred EEecCCHHHHHHHHH---cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc-CCCCEEEEECCCCCHHHHHHHHHhCCCe
Confidence 445678888877665 4799888843 21 234578888887642 2469999999999999999999999998
Q ss_pred EEe-CCC
Q 005631 95 FLV-KPI 100 (687)
Q Consensus 95 YL~-KP~ 100 (687)
..+ .|+
T Consensus 333 V~iGr~~ 339 (392)
T 2nzl_A 333 VFVGRPI 339 (392)
T ss_dssp EEECHHH
T ss_pred eEECHHH
Confidence 765 343
No 458
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=30.28 E-value=65 Score=34.21 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIR 101 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~ 101 (687)
+.++|+++++.. ..+++.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|++ +||..
T Consensus 206 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 278 (391)
T 2qgy_A 206 DLDQTKSFLKEV-SSFNPYWIEEPVDG-ENISLLTEIKNT---FNMKVVTGEKQSGLVHFRELISRNAADIFNPDISG 278 (391)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECSSCT-TCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTT
T ss_pred CHHHHHHHHHHH-HhcCCCeEeCCCCh-hhHHHHHHHHhh---CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcch
Confidence 678888877653 2456667777 764 447778888876 36887765555578899999999977766 56754
No 459
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=30.26 E-value=14 Score=34.70 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=17.0
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
|.| +|..|+||+++|+.+-.
T Consensus 12 I~l-~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 12 IVL-EGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEE-EESTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 555 89999999999999854
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.25 E-value=19 Score=34.95 Aligned_cols=29 Identities=10% Similarity=-0.114 Sum_probs=20.9
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceec
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPV 220 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~v 220 (687)
|++ .|..|+||.++|+.|-.. .+-+||..
T Consensus 19 I~l-~G~~GsGKsT~a~~La~~---l~~~~i~~ 47 (233)
T 1ak2_A 19 AVL-LGPPGAGKGTQAPKLAKN---FCVCHLAT 47 (233)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH---HTCEEEEH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH---hCCceecH
Confidence 555 799999999999998532 23355554
No 461
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=30.23 E-value=3.1e+02 Score=29.55 Aligned_cols=122 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCccEEEEcc-CCCCC-----HHHHHHHHHhhcCCCCceEEEEecCC-C-hHHHHHHHhCCCCEEEeCC
Q 005631 28 LQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIMSHKTRKNLPVIMMSSLD-S-MGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 28 ~eALe~L~~~~~~pDLVLlDl-MP~md-----GleLL~~Ir~~~~~p~iPVIvmTa~~-d-~~~av~Am~aGA~DYL~KP 99 (687)
..|++++.. ....+||||.. ----. .+..+..|++. ++.+|| .++.|. . ....+.|+.+||. +|.|=
T Consensus 174 ~~Ave~i~~-~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~--f~~lpV-G~SdHt~G~~~~~~AAvAlGA~-iIEkH 248 (385)
T 1vli_A 174 HEAWRTIRA-EGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAA--FPEAVI-GFSDHSEHPTEAPCAAVRLGAK-LIEKH 248 (385)
T ss_dssp HHHHHHHHT-TTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHH--STTSEE-EEEECCSSSSHHHHHHHHTTCS-EEEEE
T ss_pred HHHHHHHHH-CCCCcEEEEeccCCCCCChhhcCHHHHHHHHHH--cCCCCE-EeCCCCCCchHHHHHHHHcCCC-EEEeC
Q ss_pred CCH------------------HHHHHHHHHHH-------------HHHhcCCCCCCCcchhhhhhhccccccccCCCCCC
Q 005631 100 IRK------------------NELKNLWQHVW-------------RRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGS 148 (687)
Q Consensus 100 ~~~------------------eeL~~~L~~al-------------r~~~~~s~s~~~~~~~~q~~l~~k~i~~se~~s~s 148 (687)
|++ .+|...|+.++ .-...........................+...|.
T Consensus 249 ftldra~~G~D~~~SL~P~ef~~lv~~ir~i~~~~~~~~~~~~~~~alG~~~k~~~~~E~~~~~~~rrSlva~~di~~Ge 328 (385)
T 1vli_A 249 FTIDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGEIRNFAYRGIFTTAPIQKGE 328 (385)
T ss_dssp BCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHCCSSCCCCTTTCSHHHHTSCEEEESSCBCTTC
T ss_pred CCccccCCCCchhhhCCHHHHHHHHHHHHHHHhhcccccccchHHHHhCcccCccCHHHHHHHhhheeEEEEccccCCCC
Q ss_pred CCCCCC
Q 005631 149 NDEDNN 154 (687)
Q Consensus 149 ~~~~d~ 154 (687)
....++
T Consensus 329 ~it~~n 334 (385)
T 1vli_A 329 AFSEDN 334 (385)
T ss_dssp BCCTTT
T ss_pred EecHHH
No 462
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=30.21 E-value=75 Score=34.26 Aligned_cols=67 Identities=18% Similarity=0.014 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
+.++|+++++.. ..++|.+++- +|.. -++.+.+|++. ..+||+.==...+...+.++++.|+.|+|.
T Consensus 242 ~~~~Ai~~~~~L-e~~~i~~iEeP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ 309 (412)
T 3stp_A 242 NLDYAKRMLPKL-APYEPRWLEEPVIAD-DVAGYAELNAM---NIVPISGGEHEFSVIGCAELINRKAVSVLQ 309 (412)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTT-CHHHHHHHHHT---CSSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCcc-cHHHHHHHHhC---CCCCEEeCCCCCCHHHHHHHHHcCCCCEEe
Confidence 677787776653 3466767777 7643 46777888876 468877644455788899999999888775
No 463
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=30.18 E-value=18 Score=33.69 Aligned_cols=24 Identities=4% Similarity=-0.090 Sum_probs=18.2
Q ss_pred CCCCccccCCCCCCCChhHHHHHhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.....+.+ .|++|+||.++.|+|=
T Consensus 31 ~~Ge~v~L-~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 31 EKAIMVYL-NGDLGAGKTTLTRGML 54 (158)
T ss_dssp SSCEEEEE-ECSTTSSHHHHHHHHH
T ss_pred CCCCEEEE-ECCCCCCHHHHHHHHH
Confidence 33333555 6999999999999983
No 464
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=30.14 E-value=2.5e+02 Score=30.19 Aligned_cols=88 Identities=19% Similarity=0.101 Sum_probs=58.0
Q ss_pred HHHHHHHHhCCCe--EEEEeCC----HHHHHHHHHhhCCCccEEEEccCCC--CCHHHHHHHHHhh---cCCCCceEEEE
Q 005631 7 MLLLLCFEIAVMK--VITEATN----GLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSH---KTRKNLPVIMM 75 (687)
Q Consensus 7 ~ll~~lLe~~G~~--~V~~A~s----g~eALe~L~~~~~~pDLVLlDlMP~--mdGleLL~~Ir~~---~~~p~iPVIvm 75 (687)
..++.+.+..+.. ++..+++ ..+|++.+... ..+|.|.+|-|.. .+=.++.+++++. ..++. ..|+.
T Consensus 198 ~A~~~~~~~~p~~~~~~vlvDT~d~~~~~al~~a~~l-~~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~-~~I~a 275 (398)
T 2i1o_A 198 EAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMF-DKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSD-IKIMV 275 (398)
T ss_dssp HHHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTTC-SCCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTT-SEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEEcCchHHHHHHHHHHHhh-cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCc-eEEEE
Confidence 3455555555532 3456666 47787776532 2699999998433 5666777777642 01245 37888
Q ss_pred ecCCChHHHHHHHhCCCCEEEe
Q 005631 76 SSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 76 Ta~~d~~~av~Am~aGA~DYL~ 97 (687)
|+--+.+.+.+..+.|+ |++-
T Consensus 276 Sggl~~~~i~~l~~~Gv-D~~g 296 (398)
T 2i1o_A 276 SGGLDENTVKKLREAGA-EAFG 296 (398)
T ss_dssp ESSCCHHHHHHHHHTTC-CEEE
T ss_pred eCCCCHHHHHHHHHcCC-CEEE
Confidence 88889999999999998 6654
No 465
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=30.12 E-value=72 Score=33.85 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe-CCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPI 100 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~-KP~ 100 (687)
+.++|+++++.. .+++|.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|+|. |+.
T Consensus 221 ~~~~ai~~~~~l-~~~~i~~iE~P~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 292 (403)
T 2ox4_A 221 DLVSAIQFAKAI-EEFNIFFYEEINTP-LNPRLLKEAKKK---IDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLG 292 (403)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECCSCT-TSTHHHHHHHHT---CCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred CHHHHHHHHHHH-HhhCCCEEeCCCCh-hhHHHHHHHHHh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCcc
Confidence 678888887763 3578888888 764 346677777765 367877544445678899999999877775 443
No 466
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=30.11 E-value=3.4e+02 Score=28.40 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCC---------CCEEE
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG---------AVDFL 96 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aG---------A~DYL 96 (687)
+.++..+++.. .|++|+=...+.-|+.+++.+.. .+|||.. . .....+.+..| ...||
T Consensus 356 ~~~~~~~~~~~----adv~v~pS~~E~~g~~~lEAma~-----G~PvI~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l 422 (485)
T 2qzs_A 356 HEAFSHRIMGG----ADVILVPSRFEPCGLTQLYGLKY-----GTLPLVR-R---TGGLADTVSDCSLENLADGVASGFV 422 (485)
T ss_dssp CHHHHHHHHHH----CSEEEECCSCCSSCSHHHHHHHH-----TCEEEEE-S---SHHHHHHCCBCCHHHHHTTCCCBEE
T ss_pred CHHHHHHHHHh----CCEEEECCccCCCcHHHHHHHHC-----CCCEEEC-C---CCCccceeccCccccccccccceEE
Confidence 33333455544 56655522334556777777653 5788764 2 24556666777 88999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 005631 97 VKPIRKNELKNLWQHVWR 114 (687)
Q Consensus 97 ~KP~~~eeL~~~L~~alr 114 (687)
..|-+.++|...|.+++.
T Consensus 423 ~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 423 FEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp ECSSSHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHH
Confidence 999999999999998873
No 467
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.06 E-value=1.9e+02 Score=27.87 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCeEEEEeCCH-----HHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 005631 8 LLLLCFEIAVMKVITEATNG-----LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 78 (687)
Q Consensus 8 ll~~lLe~~G~~~V~~A~sg-----~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~ 78 (687)
-+...++..||.++...... .+.++.+.. ..+|-||+-. .+ .++++.+++ ..+|||++-..
T Consensus 28 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~~ 94 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSFSN----PQTVQEILH----QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESSCC----HHHHHHHHT----TSSCEEEESCC
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecCCc----HHHHHHHHH----CCCCEEEEecc
Confidence 35566778899965444332 245666666 7899888765 33 567777764 37999998654
No 468
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=30.03 E-value=3.2e+02 Score=28.62 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhhcC--CCCceEEEEecCCChHHHHHHHhCCCCEEEeCC--C
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKT--RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP--I 100 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~--~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP--~ 100 (687)
..+.++.+.. ..+|.|++|+ -|. +--.+...|+.... +...+++|=+...+...+..+++.|+...++ | -
T Consensus 52 ~p~~~e~a~~--~GaD~vilDlEha~~-~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIml-P~V~ 127 (339)
T 1izc_A 52 STFVTKVLAA--TKPDFVWIDVEHGMF-NRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVI-PHVE 127 (339)
T ss_dssp CHHHHHHHHH--TCCSEEEEETTTSCC-CHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEE-TTCC
T ss_pred CHHHHHHHHh--CCCCEEEEECCCCCC-cHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEe-CCCC
Confidence 4455566666 6799999999 443 33344444543321 1236777777777788899999999976443 5 3
Q ss_pred CHHHHHHHHHH
Q 005631 101 RKNELKNLWQH 111 (687)
Q Consensus 101 ~~eeL~~~L~~ 111 (687)
+.+++..++..
T Consensus 128 saee~~~~~~~ 138 (339)
T 1izc_A 128 TVEEVREFVKE 138 (339)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68888766543
No 469
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=29.44 E-value=18 Score=36.55 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=18.6
Q ss_pred CCCCccccCCCCCCCChhHHHHHhh
Q 005631 183 DSPRHMSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 183 ~S~~~Vli~~GEsGTGKEl~AraIH 207 (687)
.....|+| .|++|+||+++.++|=
T Consensus 23 ~~g~~v~i-~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 23 RKMGLILV-TGPTGSGKSTTIASMI 46 (261)
T ss_dssp CSSEEEEE-ECSTTCSHHHHHHHHH
T ss_pred CCCCEEEE-ECCCCccHHHHHHHHH
Confidence 33444666 7999999999998873
No 470
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=29.33 E-value=67 Score=34.12 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe-CC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KP 99 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~-KP 99 (687)
+.++|+++++.. ..++|.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|+|. ||
T Consensus 219 ~~~~a~~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 289 (393)
T 2og9_A 219 DRPTAQRMCRIF-EPFNLVWIEEPLDA-YDHEGHAALALQ---FDTPIATGEMLTSAAEHGDLIRHRAADYLMPDA 289 (393)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECCSCT-TCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred CHHHHHHHHHHH-HhhCCCEEECCCCc-ccHHHHHHHHHh---CCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCc
Confidence 567787777653 2355656677 664 347777888776 368887655556788999999999777764 55
No 471
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=29.32 E-value=1.1e+02 Score=31.42 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCceEEEEecCC--ChHHHHHHHhCCCCEEEeCCC--CHHHHHHHHHHH
Q 005631 68 KNLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 112 (687)
Q Consensus 68 p~iPVIvmTa~~--d~~~av~Am~aGA~DYL~KP~--~~eeL~~~L~~a 112 (687)
+++-+|+|+... -.+.+.+|+++|-.=|+.||+ +.+|....+..+
T Consensus 93 ~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a 141 (393)
T 4fb5_A 93 PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATA 141 (393)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhH
Confidence 456666665543 367899999999999999996 677777666544
No 472
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=29.30 E-value=1.2e+02 Score=31.57 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Q 005631 56 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 112 (687)
Q Consensus 56 eLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~a 112 (687)
+.++++|+. .|..+|+|-.. +.+.+.+|+++||+-.+.--+++++|+.++..+
T Consensus 196 ~Av~~ar~~--~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKN--LKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHH--SSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 567777776 46788887554 579999999999999999999999999888753
No 473
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=29.28 E-value=2.4e+02 Score=25.12 Aligned_cols=23 Identities=4% Similarity=0.304 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCC
Q 005631 54 GVALLSKIMSHKTRKNLPVIMMSSLDS 80 (687)
Q Consensus 54 GleLL~~Ir~~~~~p~iPVIvmTa~~d 80 (687)
-.++|+.|++. .++++++|....
T Consensus 32 ~~~~l~~L~~~----g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 32 SLQAIARLTQA----DWTVVLATNQSG 54 (179)
T ss_dssp HHHHHHHHHHT----TCEEEEEEECTT
T ss_pred HHHHHHHHHHC----CCEEEEEECCCc
Confidence 35788888765 688999998764
No 474
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=29.20 E-value=2.3e+02 Score=29.06 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=48.6
Q ss_pred EEEEeCCHHHHHHHHHhhCCCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 20 VITEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 20 ~V~~A~sg~eALe~L~~~~~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
+...+.+.+++.+.++. ..|+|++|-|...+-.++++.++.. .+.+ .|..++--+.+.+.+....|++-|.
T Consensus 197 I~Vev~t~eea~eal~a---GaD~I~LDn~~~~~~~~~v~~l~~~--~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 197 CEVEVDSLEQLDAVLPE---KPELILLDNFAVWQTQTAVQRRDSR--APTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEEESSHHHHHHHGGG---CCSEEEEETCCHHHHHHHHHHHHHH--CTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEEeCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhhcc--CCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 34578899999999875 6899999983222222345555543 2454 4566777788888888899976554
No 475
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=29.10 E-value=20 Score=41.24 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=25.0
Q ss_pred cccCCCCCCCChhHHHHHhhhcCcccCCCceecC
Q 005631 188 MSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVT 221 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~S~R~~~pFV~vn 221 (687)
|++ +|.+|+||+++|+++-..-...+-+|+.++
T Consensus 55 IvL-tGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 55 VWL-TGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEE-EeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 455 899999999999998654333356788776
No 476
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=29.03 E-value=16 Score=35.80 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=16.5
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
+.| .|++|+||.++.++|=.
T Consensus 19 i~l-~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 19 YIV-SAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEE-ECCTTSCHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHhc
Confidence 445 69999999999998844
No 477
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=29.02 E-value=80 Score=33.10 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=49.1
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIR 101 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~ 101 (687)
+.++|+++++.....+++ +++- ++ .++.+++|++. -.+||+.-=...+...+.++++.|+.|++ .||..
T Consensus 202 ~~~~a~~~~~~l~~~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 272 (371)
T 2ps2_A 202 SVETALRLLRLLPHGLDF-ALEAPCA---TWRECISLRRK---TDIPIIYDELATNEMSIVKILADDAAEGIDLKISK 272 (371)
T ss_dssp CHHHHHHHHHHSCTTCCC-EEECCBS---SHHHHHHHHTT---CCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHH
T ss_pred CHHHHHHHHHHHHhhcCC-cCcCCcC---CHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhh
Confidence 678888888773134677 7777 76 56777888765 36887765445678899999999877766 67743
No 478
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=28.92 E-value=80 Score=33.29 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPI 100 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~ 100 (687)
+.++|+++++.. ..+++.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|++ .||.
T Consensus 202 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~ 273 (384)
T 2pgw_A 202 SVHDAINMCRKL-EKYDIEFIEQPTVS-WSIPAMAHVREK---VGIPIVADQAAFTLYDVYEICRQRAADMICIGPR 273 (384)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCT-TCHHHHHHHHHH---CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEeCCCCh-hhHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcch
Confidence 567777776542 2355656677 753 347778888876 36888765555578899999999866654 5664
No 479
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=28.91 E-value=1e+02 Score=31.22 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHhhC-CCccEEEEcc-C--CCCCH-----------------HHHHHHHHhhcCCCCceEEEEecCC----
Q 005631 25 TNGLQAWKILEDLT-NHIDLVLTEV-M--PCLSG-----------------VALLSKIMSHKTRKNLPVIMMSSLD---- 79 (687)
Q Consensus 25 ~sg~eALe~L~~~~-~~pDLVLlDl-M--P~mdG-----------------leLL~~Ir~~~~~p~iPVIvmTa~~---- 79 (687)
.+.+.-+++++... ...|+|=+.+ . |-.|| -.+++.+++.+ ..+|||+|+-+.
T Consensus 25 P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r--~~~Pivlm~Y~N~i~~ 102 (252)
T 3tha_A 25 PNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIK--TKKALVFMVYYNLIFS 102 (252)
T ss_dssp SCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCC--CSSEEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHh--cCCCEEEEeccCHHHH
Confidence 44555555544321 5689877666 3 44555 23445555543 348999998743
Q ss_pred --ChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 005631 80 --SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 80 --d~~~av~Am~aGA~DYL~KP~~~eeL~~~L~~alr~~ 116 (687)
-...+.+|.++|++.+|+--+.++|.. .+..+++.+
T Consensus 103 ~G~e~F~~~~~~aGvdG~IipDLP~eE~~-~~~~~~~~~ 140 (252)
T 3tha_A 103 YGLEKFVKKAKSLGICALIVPELSFEESD-DLIKECERY 140 (252)
T ss_dssp HCHHHHHHHHHHTTEEEEECTTCCGGGCH-HHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHHc
Confidence 445678889999999999888888744 344444443
No 480
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=28.88 E-value=18 Score=35.69 Aligned_cols=19 Identities=5% Similarity=-0.212 Sum_probs=16.5
Q ss_pred cccCCCCCCCChhHHHHHhh
Q 005631 188 MSPSDQLAECPDSTCAQVIH 207 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH 207 (687)
|+| +|.+|+||.++|+.|-
T Consensus 32 I~l-~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 32 YIF-LGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEE-ECCTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHH
Confidence 455 8999999999999984
No 481
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=28.55 E-value=3e+02 Score=26.66 Aligned_cols=88 Identities=16% Similarity=0.065 Sum_probs=57.3
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCH-----------HHHHHHHHhhcCCCCceEEEEecCCCh
Q 005631 14 EIAVMKVITEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----------VALLSKIMSHKTRKNLPVIMMSSLDSM 81 (687)
Q Consensus 14 e~~G~~~V~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdG-----------leLL~~Ir~~~~~p~iPVIvmTa~~d~ 81 (687)
...|...+.++.+..++.+. .. ...++|-..- ..-..| -++++.++... ..+|||+-.+-...
T Consensus 108 ~~~Gl~~iv~v~~~~e~~~~-~~--~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~--~~~~ii~ggGI~~~ 182 (219)
T 2h6r_A 108 KNLGLETIVCTNNINTSKAV-AA--LSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEIN--KDVKVLCGAGISKG 182 (219)
T ss_dssp HHHTCEEEEEESSSHHHHHH-TT--TCCSEEEECCCC--------------CSHHHHHHHHHHC--TTCEEEECSSCCSH
T ss_pred HHCCCeEEEEeCCchHHHHH-Hh--CCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhcc--CCCeEEEEeCcCcH
Confidence 44588877788877775443 33 4567777766 531133 24556666652 47888888888888
Q ss_pred HHHHHHHhCCCCEEEe-----CCCCHHHHH
Q 005631 82 GLVFKCLSKGAVDFLV-----KPIRKNELK 106 (687)
Q Consensus 82 ~~av~Am~aGA~DYL~-----KP~~~eeL~ 106 (687)
+.+..+...|++.+|+ |+-++.++.
T Consensus 183 ~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~ 212 (219)
T 2h6r_A 183 EDVKAALDLGAEGVLLASGVVKAKNVEEAI 212 (219)
T ss_dssp HHHHHHHTTTCCCEEESHHHHTCSSHHHHH
T ss_pred HHHHHHhhCCCCEEEEcHHHhCcccHHHHH
Confidence 8898899999999987 454444443
No 482
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=28.53 E-value=71 Score=33.63 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEE-EeCCC
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF-LVKPI 100 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DY-L~KP~ 100 (687)
+.++|+++++.. . +++ +++- +| -++.+++|++. -.+||+.==.-.+...+.++++.|+.|+ ..||.
T Consensus 202 ~~~~a~~~~~~l-~-~~i-~iEqP~~---d~~~~~~l~~~---~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (378)
T 2qdd_A 202 TPAIAVEVLNSV-R-ARD-WIEQPCQ---TLDQCAHVARR---VANPIMLDECLHEFSDHLAAWSRGACEGVKIKPN 269 (378)
T ss_dssp CHHHHHHHHTSC-C-CCC-EEECCSS---SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHh-C-CCc-EEEcCCC---CHHHHHHHHHh---CCCCEEECCCcCCHHHHHHHHHhCCCCEEEeccc
Confidence 578888888874 3 778 8777 77 57788888865 4688776444456788999998886665 55664
No 483
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=28.51 E-value=54 Score=33.96 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=43.6
Q ss_pred CCccEEEEccCCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCC-CEEEeCCCC--HHHHHHHHHHH
Q 005631 39 NHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA-VDFLVKPIR--KNELKNLWQHV 112 (687)
Q Consensus 39 ~~pDLVLlDlMP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA-~DYL~KP~~--~eeL~~~L~~a 112 (687)
..+|+||+|+.|. +|...+...+... + .+.+.+.++-|. -.|++|=|. -.+....+..+
T Consensus 155 ~~~DvVLSDmApn-sG~~~~D~~rs~~----L----------L~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~l 216 (282)
T 3gcz_A 155 IPGDTLLCDIGES-SPSIAVEEQRTLR----V----------LNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRL 216 (282)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHH----H----------HHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHH
T ss_pred CCcCEEEecCccC-CCChHHHHHHHHH----H----------HHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHH
Confidence 6799999999777 8888788877652 1 678888888884 589999888 45554444443
No 484
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=28.48 E-value=62 Score=34.53 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCCHH
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIRKN 103 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~~e 103 (687)
+.++|+++++.. ..+++.+++- +|.. .++.+.+|++. -.+||+.-=.-.+...+.++++.|+.|++ .|+...-
T Consensus 218 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~G 292 (394)
T 3mkc_A 218 DWYEVARLLNSI-EDLELYFAEATLQHD-DLSGHAKLVEN---TRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCG 292 (394)
T ss_dssp CHHHHHHHHHHT-GGGCCSEEESCSCTT-CHHHHHHHHHH---CSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHh-hhcCCeEEECCCCch-hHHHHHHHHhh---CCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccC
Confidence 667777777652 2456667777 6543 36667777765 35777654344567788889999877765 5665543
Q ss_pred HHHH
Q 005631 104 ELKN 107 (687)
Q Consensus 104 eL~~ 107 (687)
=|..
T Consensus 293 Git~ 296 (394)
T 3mkc_A 293 GLTE 296 (394)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 4433
No 485
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=28.38 E-value=86 Score=40.93 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=61.4
Q ss_pred HHHHHHhCCCeEEEEeCCHHHHHHH---HHhhCCCccEEE-Ecc----CCCCCH--------HHHHHHHHhhcCCCCceE
Q 005631 9 LLLCFEIAVMKVITEATNGLQAWKI---LEDLTNHIDLVL-TEV----MPCLSG--------VALLSKIMSHKTRKNLPV 72 (687)
Q Consensus 9 l~~lLe~~G~~~V~~A~sg~eALe~---L~~~~~~pDLVL-lDl----MP~mdG--------leLL~~Ir~~~~~p~iPV 72 (687)
+..+++..|..++..+.+..+|++. +.+ ..+|.|+ +.+ -.+-.| ++++.+|++. .++||
T Consensus 684 ~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~--aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~---~~ipv 758 (2060)
T 2uva_G 684 ANEYIQTLGIRHISFKPGSVDAIQQVINIAK--ANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKC---SNIVL 758 (2060)
T ss_dssp HHHHHHHSCCSEEEECCCSHHHHHHHHHHHH--HCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTS---TTEEE
T ss_pred HHHHHHHcCCeEEEecCCHHHHHHHHHHHHH--cCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHH---cCCCE
Confidence 3456677788888888888888877 223 3688776 222 112222 5677788765 57999
Q ss_pred EEEecCCChHHHHHHH-----------hCCCCEEEe
Q 005631 73 IMMSSLDSMGLVFKCL-----------SKGAVDFLV 97 (687)
Q Consensus 73 IvmTa~~d~~~av~Am-----------~aGA~DYL~ 97 (687)
|+-.+-.+.+.+..++ .+||+..+.
T Consensus 759 iaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~ 794 (2060)
T 2uva_G 759 VAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMF 794 (2060)
T ss_dssp EEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEE
T ss_pred EEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEE
Confidence 9999999999999999 999999765
No 486
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=28.33 E-value=1e+02 Score=32.86 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
-+.++|+++++.. ..++|.+++- +|.. .++.+.+|++. -.+||+.==.-.+...+.++++.|+.|+|.
T Consensus 230 ~~~~~A~~~~~~l-~~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ 298 (390)
T 3ugv_A 230 LDMAEAMHRTRQI-DDLGLEWIEEPVVYD-NFDGYAQLRHD---LKTPLMIGENFYGPREMHQALQAGACDLVM 298 (390)
T ss_dssp CCHHHHHHHHHHH-TTSCCSEEECCSCTT-CHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred CCHHHHHHHHHHH-HhhCCCEEECCCCcc-cHHHHHHHHHh---cCCCEEeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 3577787777653 3467777787 7643 36677788766 367877644455678899999999877764
No 487
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=28.21 E-value=1.7e+02 Score=31.03 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhCCCccEEEEcc-CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEe
Q 005631 27 GLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 97 (687)
Q Consensus 27 g~eALe~L~~~~~~pDLVLlDl-MP~m-dGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~ 97 (687)
..+.++.+.+ ..+|+|.++. ..+- .-++++++|++. ++.+|||+-. -.+.+.+..+.+.||+...+
T Consensus 154 ~~~~a~~~~~--~G~d~i~i~~~~g~~~~~~e~i~~ir~~--~~~~pviv~~-v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 154 TIERVEELVK--AHVDILVIDSAHGHSTRIIELIKKIKTK--YPNLDLIAGN-IVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHHHH--TTCSEEEECCSCCSSHHHHHHHHHHHHH--CTTCEEEEEE-ECSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHH--CCCCEEEEeCCCCChHHHHHHHHHHHHH--CCCCeEEEcC-CCcHHHHHHHHhcCCCEEEE
Confidence 3444555555 5789998877 4222 246788888877 4578888622 24578999999999887776
No 488
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=28.19 E-value=18 Score=36.17 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=21.5
Q ss_pred hhcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 180 VEVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 180 ~ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
+.+....-+.| .|++|+||+++.++|=-.
T Consensus 30 l~i~~Ge~~~i-~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 30 LSIKQGEVIGI-VGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEETTCEEEE-ECSTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEE-ECCCCCCHHHHHHHHhcC
Confidence 33455555666 699999999999998443
No 489
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=28.12 E-value=18 Score=37.48 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=17.5
Q ss_pred cccCCCCCCCChhHHHHHhhhc
Q 005631 188 MSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~~ 209 (687)
|-| .|++|+||+++++.|-..
T Consensus 93 vgI-~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 93 IGV-AGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHH
T ss_pred EEE-ECCCCchHHHHHHHHHhh
Confidence 555 799999999999998653
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=28.06 E-value=13 Score=37.99 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=14.4
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
++.++|.+|+||+++|+.+-.
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 344499999999999999865
No 491
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=27.96 E-value=20 Score=32.80 Aligned_cols=20 Identities=10% Similarity=-0.202 Sum_probs=17.1
Q ss_pred cccCCCCCCCChhHHHHHhhh
Q 005631 188 MSPSDQLAECPDSTCAQVIHS 208 (687)
Q Consensus 188 Vli~~GEsGTGKEl~AraIH~ 208 (687)
.+| .|++|+||+.+..||+.
T Consensus 26 ~~I-~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLI-IGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEE-ECCTTSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH
Confidence 344 79999999999999984
No 492
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=27.91 E-value=16 Score=38.50 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=22.3
Q ss_pred cCCCCccccCCCCCCCChhHHHHHhhhcC
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVIHSNA 210 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraIH~~S 210 (687)
+.....++| .|+||+||.++.++|-..-
T Consensus 172 i~~G~~i~i-vG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVV-AGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHTTCCEEE-EESSSSCHHHHHHHHHTTS
T ss_pred HhcCCEEEE-ECCCCCCHHHHHHHHHhcC
Confidence 456667777 7999999999999985443
No 493
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=27.68 E-value=71 Score=34.11 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE-eCCCCH
Q 005631 25 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPIRK 102 (687)
Q Consensus 25 ~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL-~KP~~~ 102 (687)
-+..+|+++++.. ..+++.+++- +|..+.++.+.+|++. ..+||+.==.-.+...+.++++.|+.|+| +|+...
T Consensus 210 ~~~~~A~~~~~~L-~~~~i~~iEeP~~~~d~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~ 285 (392)
T 3ddm_A 210 WDLPRARQMAQRL-GPAQLDWLEEPLRADRPAAEWAELAQA---APMPLAGGENIAGVAAFETALAARSLRVMQPDLAKW 285 (392)
T ss_dssp CCHHHHHHHHHHH-GGGCCSEEECCSCTTSCHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTT
T ss_pred CCHHHHHHHHHHH-HHhCCCEEECCCCccchHHHHHHHHHh---cCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchh
Confidence 3678888776653 2467777888 7754447788888876 46887765445578888999999988876 455544
Q ss_pred HHHH
Q 005631 103 NELK 106 (687)
Q Consensus 103 eeL~ 106 (687)
-=|.
T Consensus 286 GGit 289 (392)
T 3ddm_A 286 GGFS 289 (392)
T ss_dssp THHH
T ss_pred CCHH
Confidence 3333
No 494
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=27.64 E-value=19 Score=35.33 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=21.1
Q ss_pred hcCCCCccccCCCCCCCChhHHHHHhhhc
Q 005631 181 EVDSPRHMSPSDQLAECPDSTCAQVIHSN 209 (687)
Q Consensus 181 ea~S~~~Vli~~GEsGTGKEl~AraIH~~ 209 (687)
++....-+.| .|++|+||+++.++|--.
T Consensus 31 ~i~~Ge~~~i-iG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 31 TIEKGNVVNF-HGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEETTCCEEE-ECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEE-ECCCCCCHHHHHHHHhcC
Confidence 3445555666 699999999999999544
No 495
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=27.62 E-value=1.3e+02 Score=32.10 Aligned_cols=71 Identities=8% Similarity=0.129 Sum_probs=50.7
Q ss_pred eCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEEeCC
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 99 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL~KP 99 (687)
.-+..+|+++++.. .+++|.+++- +|.. .++-+++|++. -.+||..==...+...+.++++.||.|++..-
T Consensus 242 ~~~~~~A~~~~~~l-~~~~l~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d 313 (412)
T 4h1z_A 242 AHTASEAVALIKAM-EPHGLWFAEAPVRTE-DIDGLARVAAS---VSTAIAVGEEWRTVHDMVPRVARRALAIVQPE 313 (412)
T ss_dssp CCCHHHHHHHHHHH-GGGCEEEEECCSCTT-CHHHHHHHHHH---CSSEEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCCHHHHHHHHHhh-cccccceecCCCCcc-chHHHHHHHhh---cCCccccCCcccchHhHHHHHHcCCCCEEEec
Confidence 34788999888763 3678888888 7653 36667778766 35776532223467788899999999998754
No 496
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=27.61 E-value=77 Score=33.81 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHhCCCCEEE
Q 005631 26 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 96 (687)
Q Consensus 26 sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~aGA~DYL 96 (687)
+.++|+++++.. ..++|.+++- +|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|+|
T Consensus 222 ~~~~a~~~~~~l-~~~~i~~iEeP~~~-~d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 288 (410)
T 2qq6_A 222 DIPSSIRFARAM-EPFGLLWLEEPTPP-ENLDALAEVRRS---TSTPICAGENVYTRFDFRELFAKRAVDYV 288 (410)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCT-TCHHHHHHHHTT---CSSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred CHHHHHHHHHHH-hhcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEeCCCcCCHHHHHHHHHcCCCCEE
No 497
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=27.49 E-value=4.2e+02 Score=27.70 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHhhCCCccEEEEcc-CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChH
Q 005631 5 LAMLLLLCFEIAVMKVI-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 82 (687)
Q Consensus 5 ~r~ll~~lLe~~G~~~V-~~A~sg~eALe~L~~~~~~pDLVLlDl-MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~ 82 (687)
....++.+.+..+-.++ ..-.+.++..+++.. .|++|+ . .-+.-|+.+++.+..- +|||.... .
T Consensus 333 ~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~-pS~~E~~~~~~lEAma~G-----~PvI~s~~----g 398 (485)
T 1rzu_A 333 LEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIII-PSRFEPCGLTQLYALRYG-----CIPVVART----G 398 (485)
T ss_dssp HHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEE-CCSCCSSCSHHHHHHHHT-----CEEEEESS----H
T ss_pred HHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEE-CcccCCCCHHHHHHHHCC-----CCEEEeCC----C
Q ss_pred HHHHHHhCC---------CCEEEeCCCCHHHHHHHHHHHH
Q 005631 83 LVFKCLSKG---------AVDFLVKPIRKNELKNLWQHVW 113 (687)
Q Consensus 83 ~av~Am~aG---------A~DYL~KP~~~eeL~~~L~~al 113 (687)
...+.+..| ...|+..|-+.++|...|.+++
T Consensus 399 g~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 399 GLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp HHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred ChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
No 498
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=27.48 E-value=98 Score=32.12 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=0.0
Q ss_pred eCCHHHHHHHHHhhCCCccEEEEcc--CCCCCHHHHHHHHHhhcCCCCceEEEEecCCChHHHHHHHh-CCCCEE
Q 005631 24 ATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS-KGAVDF 95 (687)
Q Consensus 24 A~sg~eALe~L~~~~~~pDLVLlDl--MP~mdGleLL~~Ir~~~~~p~iPVIvmTa~~d~~~av~Am~-aGA~DY 95 (687)
+.+..+||+.|.+ ..+|-||+-= -...+|+++|+++.+. ...-..||.-+--..+.+.+.++ .|+..|
T Consensus 165 ~~d~~~Ale~Li~--lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~--a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~ 235 (287)
T 3iwp_A 165 VHDPMAALETLLT--LGFERVLTSGCDSSALEGLPLIKRLIEQ--AKGRIVVMPGGGITDRNLQRILEGSGATEF 235 (287)
T ss_dssp CSCHHHHHHHHHH--HTCSEEEECTTSSSTTTTHHHHHHHHHH--HTTSSEEEECTTCCTTTHHHHHHHHCCSEE
T ss_pred cCCHHHHHHHHHH--cCCCEEECCCCCCChHHhHHHHHHHHHH--hCCCCEEEECCCcCHHHHHHHHHhhCCCEE
No 499
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=27.43 E-value=18 Score=34.60 Aligned_cols=25 Identities=8% Similarity=-0.088 Sum_probs=0.0
Q ss_pred cCCCCccccCCCCCCCChhHHHHHh
Q 005631 182 VDSPRHMSPSDQLAECPDSTCAQVI 206 (687)
Q Consensus 182 a~S~~~Vli~~GEsGTGKEl~AraI 206 (687)
+.+....+++.|.+|+||.++|+.|
T Consensus 1 ~~~~~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 1 ALADPLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp --CCSCCEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHH
No 500
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=27.30 E-value=1.6e+02 Score=29.72 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCccEEEEc-----------------------------c-CC------CCCHHHHHHH
Q 005631 17 VMKVITEATNGLQAWKILEDLTNHIDLVLTE-----------------------------V-MP------CLSGVALLSK 60 (687)
Q Consensus 17 G~~~V~~A~sg~eALe~L~~~~~~pDLVLlD-----------------------------l-MP------~mdGleLL~~ 60 (687)
+..++..+.+.++++..+.. .+|+|.+. - .+ ...+++++++
T Consensus 125 ~i~l~~~v~~~~~~~~a~~~---Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~ 201 (297)
T 2zbt_A 125 KVPFVCGARNLGEALRRIAE---GAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKW 201 (297)
T ss_dssp SSCEEEEESSHHHHHHHHHT---TCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHH
T ss_pred CceEEeecCCHHHHHHHHHc---CCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHH
Q ss_pred HHhhcCCCCceEE--EEecCCChHHHHHHHhCCCCEEE-----eCCCCHHHHHHHHHHHHHHH
Q 005631 61 IMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRRC 116 (687)
Q Consensus 61 Ir~~~~~p~iPVI--vmTa~~d~~~av~Am~aGA~DYL-----~KP~~~eeL~~~L~~alr~~ 116 (687)
|++. ..+||| +..+-.+.+.+.+++.+||+.++ .+.-++.+....+...++..
T Consensus 202 l~~~---~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~ 261 (297)
T 2zbt_A 202 VHDH---GRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHY 261 (297)
T ss_dssp HHHH---SSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred HHHh---cCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Done!