Query 005632
Match_columns 687
No_of_seqs 1221 out of 3936
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 11:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2076 RNA polymerase III tra 100.0 1.4E-50 3E-55 405.2 58.5 628 12-686 117-781 (895)
2 KOG4626 O-linked N-acetylgluco 100.0 3.9E-45 8.5E-50 349.6 36.4 458 34-622 48-505 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-42 2.5E-47 398.8 58.9 582 33-686 294-878 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-42 6.7E-47 395.2 57.6 586 31-686 122-710 (899)
5 PRK11447 cellulose synthase su 100.0 6E-40 1.3E-44 374.5 58.0 589 31-680 25-749 (1157)
6 KOG4626 O-linked N-acetylgluco 100.0 5.7E-43 1.2E-47 334.9 27.1 371 33-423 81-451 (966)
7 KOG2002 TPR-containing nuclear 100.0 4.3E-36 9.2E-41 303.3 43.9 557 29-686 159-757 (1018)
8 PRK11447 cellulose synthase su 100.0 3.9E-35 8.6E-40 335.1 56.3 511 36-639 114-739 (1157)
9 PRK09782 bacteriophage N4 rece 100.0 2.6E-35 5.7E-40 320.0 50.9 540 33-686 43-718 (987)
10 KOG2002 TPR-containing nuclear 100.0 1.5E-34 3.3E-39 292.1 44.6 562 37-686 131-723 (1018)
11 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-34 3.3E-39 310.6 47.9 449 35-610 128-579 (615)
12 TIGR00990 3a0801s09 mitochondr 100.0 8.2E-33 1.8E-37 297.2 45.8 467 68-676 127-599 (615)
13 PRK09782 bacteriophage N4 rece 100.0 2E-31 4.4E-36 289.9 49.2 543 31-684 75-749 (987)
14 PRK15174 Vi polysaccharide exp 100.0 3.4E-31 7.5E-36 282.9 44.5 370 36-420 44-417 (656)
15 PRK10049 pgaA outer membrane p 100.0 2.7E-29 5.8E-34 274.5 46.2 427 41-615 22-469 (765)
16 PRK15174 Vi polysaccharide exp 100.0 7.2E-30 1.6E-34 272.8 40.7 363 45-427 16-385 (656)
17 KOG0547 Translocase of outer m 100.0 1.7E-29 3.8E-34 236.5 31.9 338 34-379 115-568 (606)
18 PRK10049 pgaA outer membrane p 100.0 2.5E-28 5.4E-33 266.8 46.4 383 31-432 46-465 (765)
19 PRK14574 hmsH outer membrane p 100.0 7.5E-27 1.6E-31 249.1 49.5 465 29-611 29-522 (822)
20 KOG0547 Translocase of outer m 100.0 8.7E-27 1.9E-31 218.6 29.6 337 68-424 115-567 (606)
21 PLN03077 Protein ECB2; Provisi 100.0 3.2E-25 6.9E-30 248.2 44.2 571 33-687 50-699 (857)
22 PRK14574 hmsH outer membrane p 100.0 6.8E-25 1.5E-29 234.3 44.1 478 61-681 27-520 (822)
23 KOG1126 DNA-binding cell divis 100.0 7.5E-27 1.6E-31 228.5 25.8 309 33-349 318-626 (638)
24 KOG0624 dsRNA-activated protei 100.0 4.4E-25 9.6E-30 197.9 31.7 322 31-382 35-375 (504)
25 PLN03081 pentatricopeptide (PP 100.0 1.9E-24 4.1E-29 236.2 42.3 464 38-641 91-558 (697)
26 KOG0495 HAT repeat protein [RN 100.0 8.9E-23 1.9E-27 198.1 48.5 521 47-681 264-853 (913)
27 PRK11788 tetratricopeptide rep 100.0 9.8E-25 2.1E-29 223.5 37.2 277 30-315 31-317 (389)
28 PLN03077 Protein ECB2; Provisi 99.9 1E-23 2.3E-28 236.1 46.6 491 37-640 225-720 (857)
29 PLN03218 maturation of RBCL 1; 99.9 5.4E-22 1.2E-26 218.1 57.1 375 34-424 370-749 (1060)
30 PRK11788 tetratricopeptide rep 99.9 2.4E-24 5.3E-29 220.5 36.2 304 67-376 34-346 (389)
31 PLN03081 pentatricopeptide (PP 99.9 2.8E-23 6.2E-28 226.9 44.5 466 69-674 88-557 (697)
32 KOG2076 RNA polymerase III tra 99.9 9.8E-23 2.1E-27 205.9 43.7 572 31-678 170-853 (895)
33 KOG1126 DNA-binding cell divis 99.9 6.1E-25 1.3E-29 215.2 25.2 306 69-382 318-625 (638)
34 KOG2003 TPR repeat-containing 99.9 1.3E-23 2.7E-28 195.4 31.2 463 31-622 198-709 (840)
35 KOG1155 Anaphase-promoting com 99.9 1E-22 2.3E-27 190.2 37.2 378 33-430 163-543 (559)
36 KOG1155 Anaphase-promoting com 99.9 1.8E-22 3.9E-27 188.7 38.2 331 67-424 163-496 (559)
37 PLN03218 maturation of RBCL 1; 99.9 5.4E-21 1.2E-25 210.4 55.1 369 41-427 413-787 (1060)
38 KOG0548 Molecular co-chaperone 99.9 4.4E-23 9.6E-28 197.2 32.8 368 36-419 4-485 (539)
39 KOG1173 Anaphase-promoting com 99.9 6.9E-22 1.5E-26 189.7 37.9 461 35-619 17-535 (611)
40 KOG2003 TPR repeat-containing 99.9 1.2E-23 2.5E-28 195.6 24.4 496 32-656 147-705 (840)
41 KOG0495 HAT repeat protein [RN 99.9 3E-20 6.5E-25 180.8 48.7 463 47-615 389-893 (913)
42 KOG1156 N-terminal acetyltrans 99.9 8.1E-21 1.8E-25 185.2 43.9 171 30-200 3-173 (700)
43 KOG1127 TPR repeat-containing 99.9 2.5E-21 5.4E-26 196.7 32.7 589 47-686 471-1116(1238)
44 KOG1173 Anaphase-promoting com 99.9 2.3E-21 5E-26 186.1 29.2 295 29-358 239-533 (611)
45 KOG0548 Molecular co-chaperone 99.9 1.1E-20 2.3E-25 181.0 31.2 340 71-427 5-459 (539)
46 KOG4162 Predicted calmodulin-b 99.9 6.9E-19 1.5E-23 175.4 43.6 548 39-684 179-793 (799)
47 KOG0624 dsRNA-activated protei 99.9 5.9E-21 1.3E-25 171.6 25.0 380 64-515 34-433 (504)
48 KOG4162 Predicted calmodulin-b 99.9 1.3E-19 2.8E-24 180.4 37.1 366 41-424 330-784 (799)
49 PF13429 TPR_15: Tetratricopep 99.9 1.1E-22 2.5E-27 196.6 14.1 263 106-376 12-276 (280)
50 PRK12370 invasion protein regu 99.9 3.6E-20 7.8E-25 195.4 32.7 251 83-343 276-535 (553)
51 TIGR00540 hemY_coli hemY prote 99.9 2.2E-19 4.8E-24 182.5 36.9 300 36-342 86-398 (409)
52 PF13429 TPR_15: Tetratricopep 99.9 3.3E-22 7.2E-27 193.4 14.5 257 39-304 13-273 (280)
53 TIGR00540 hemY_coli hemY prote 99.9 1.6E-19 3.4E-24 183.6 33.1 302 107-424 89-400 (409)
54 KOG1174 Anaphase-promoting com 99.9 2.7E-19 5.8E-24 165.0 30.9 312 40-360 204-517 (564)
55 KOG1127 TPR repeat-containing 99.9 3.3E-19 7E-24 181.6 33.4 599 37-685 495-1186(1238)
56 PRK12370 invasion protein regu 99.9 1.9E-19 4.2E-24 189.9 32.5 266 32-307 256-534 (553)
57 KOG1174 Anaphase-promoting com 99.9 7.6E-19 1.6E-23 162.1 31.3 378 28-427 91-504 (564)
58 KOG1129 TPR repeat-containing 99.9 9.7E-20 2.1E-24 162.8 23.8 337 38-382 8-463 (478)
59 KOG1915 Cell cycle control pro 99.9 4.3E-16 9.3E-21 146.6 47.9 456 35-618 74-551 (677)
60 KOG1129 TPR repeat-containing 99.9 2.8E-20 6.1E-25 166.2 18.9 274 76-357 187-472 (478)
61 PRK10747 putative protoheme IX 99.9 1.4E-18 3E-23 175.6 33.0 299 71-377 87-390 (398)
62 PRK10747 putative protoheme IX 99.9 4.5E-18 9.8E-23 171.9 36.5 297 35-344 85-391 (398)
63 PRK11189 lipoprotein NlpI; Pro 99.9 7.1E-19 1.5E-23 169.9 27.8 238 47-291 39-283 (296)
64 KOG1156 N-terminal acetyltrans 99.8 3.3E-17 7.1E-22 160.3 38.3 489 69-674 8-511 (700)
65 COG3063 PilF Tfp pilus assembl 99.8 1.9E-18 4.1E-23 147.9 24.3 204 32-237 33-238 (250)
66 KOG2376 Signal recognition par 99.8 4.4E-16 9.5E-21 150.9 41.8 472 33-622 11-507 (652)
67 KOG1125 TPR repeat-containing 99.8 3.9E-19 8.4E-24 171.9 20.4 256 37-298 288-561 (579)
68 PRK11189 lipoprotein NlpI; Pro 99.8 4.3E-18 9.3E-23 164.5 26.4 240 81-360 39-283 (296)
69 TIGR02521 type_IV_pilW type IV 99.8 8E-18 1.7E-22 159.5 27.9 203 31-235 28-232 (234)
70 COG3063 PilF Tfp pilus assembl 99.8 1.4E-17 3E-22 142.7 25.3 209 137-351 36-244 (250)
71 KOG0550 Molecular chaperone (D 99.8 4.6E-18 1E-22 157.3 20.2 285 33-346 48-353 (486)
72 KOG1125 TPR repeat-containing 99.8 1E-17 2.2E-22 162.2 23.4 259 106-372 289-566 (579)
73 TIGR02521 type_IV_pilW type IV 99.8 3.3E-17 7.2E-22 155.2 27.0 199 67-271 30-230 (234)
74 KOG0550 Molecular chaperone (D 99.8 8.9E-18 1.9E-22 155.4 21.8 284 70-377 51-350 (486)
75 KOG1915 Cell cycle control pro 99.8 8E-15 1.7E-19 138.2 41.2 488 56-674 61-585 (677)
76 COG2956 Predicted N-acetylgluc 99.8 7.3E-16 1.6E-20 138.3 32.0 263 37-308 38-311 (389)
77 KOG3785 Uncharacterized conser 99.8 4.1E-15 9E-20 134.9 37.0 359 44-419 32-453 (557)
78 COG2956 Predicted N-acetylgluc 99.8 6.3E-16 1.4E-20 138.7 31.4 271 71-348 38-316 (389)
79 cd05804 StaR_like StaR_like; a 99.8 8.9E-16 1.9E-20 155.1 33.0 312 64-378 2-337 (355)
80 PLN02789 farnesyltranstransfer 99.8 5.7E-16 1.2E-20 148.6 28.7 219 32-256 34-267 (320)
81 cd05804 StaR_like StaR_like; a 99.8 4.8E-15 1E-19 149.8 34.7 311 31-344 3-337 (355)
82 KOG1840 Kinesin light chain [C 99.8 1.7E-15 3.8E-20 151.4 29.9 244 99-342 196-478 (508)
83 PF12569 NARP1: NMDA receptor- 99.7 2.2E-14 4.9E-19 145.6 37.9 142 278-425 193-336 (517)
84 KOG3785 Uncharacterized conser 99.7 5.4E-15 1.2E-19 134.2 28.6 363 38-421 61-488 (557)
85 KOG1840 Kinesin light chain [C 99.7 1.5E-15 3.2E-20 151.9 26.8 243 64-306 195-477 (508)
86 PLN02789 farnesyltranstransfer 99.7 5.5E-15 1.2E-19 141.9 28.1 185 66-256 35-229 (320)
87 PF12569 NARP1: NMDA receptor- 99.7 2E-12 4.2E-17 131.6 46.1 305 34-346 4-337 (517)
88 KOG2376 Signal recognition par 99.7 8.3E-13 1.8E-17 128.6 40.4 372 31-424 43-447 (652)
89 TIGR03302 OM_YfiO outer membra 99.7 4.2E-15 9.1E-20 140.1 22.1 190 29-235 28-232 (235)
90 COG3071 HemY Uncharacterized e 99.7 2.7E-12 5.9E-17 119.6 35.1 294 36-341 86-388 (400)
91 PRK15359 type III secretion sy 99.6 6.3E-15 1.4E-19 125.1 15.6 126 54-182 13-138 (144)
92 TIGR03302 OM_YfiO outer membra 99.6 3.3E-14 7.3E-19 133.9 21.7 192 64-275 29-234 (235)
93 COG3071 HemY Uncharacterized e 99.6 3E-12 6.5E-17 119.3 32.8 299 71-376 87-389 (400)
94 KOG2047 mRNA splicing factor [ 99.6 2.5E-10 5.4E-15 112.5 47.4 162 218-379 359-542 (835)
95 KOG4340 Uncharacterized conser 99.6 1.2E-12 2.5E-17 116.5 28.6 355 44-424 20-376 (459)
96 KOG2047 mRNA splicing factor [ 99.6 5E-11 1.1E-15 117.2 39.8 543 51-677 43-690 (835)
97 PRK15359 type III secretion sy 99.6 3.6E-14 7.8E-19 120.5 15.3 125 88-217 13-137 (144)
98 PRK10370 formate-dependent nit 99.6 1.6E-13 3.5E-18 123.1 19.0 155 40-205 22-179 (198)
99 COG5010 TadD Flp pilus assembl 99.6 5.6E-13 1.2E-17 117.6 20.5 181 50-233 49-229 (257)
100 KOG4340 Uncharacterized conser 99.6 2.6E-12 5.7E-17 114.3 23.9 368 33-424 43-444 (459)
101 PRK04841 transcriptional regul 99.6 1.7E-11 3.7E-16 140.1 36.9 385 33-424 339-761 (903)
102 KOG1130 Predicted G-alpha GTPa 99.6 2.7E-13 5.8E-18 125.8 17.6 320 33-366 16-373 (639)
103 PRK10370 formate-dependent nit 99.5 3E-13 6.5E-18 121.3 17.6 126 47-172 52-180 (198)
104 COG5010 TadD Flp pilus assembl 99.5 2.5E-12 5.4E-17 113.5 21.0 181 84-271 49-229 (257)
105 PRK04841 transcriptional regul 99.5 3.9E-10 8.4E-15 129.0 44.6 346 70-424 343-721 (903)
106 PRK14720 transcript cleavage f 99.5 4.6E-12 1E-16 134.5 26.2 269 29-347 26-310 (906)
107 PRK14720 transcript cleavage f 99.5 6.5E-12 1.4E-16 133.4 25.4 242 63-359 26-268 (906)
108 KOG3060 Uncharacterized conser 99.5 1.9E-11 4.2E-16 106.6 23.7 200 47-252 25-233 (289)
109 KOG3060 Uncharacterized conser 99.5 1.6E-11 3.4E-16 107.2 22.6 176 29-204 46-225 (289)
110 TIGR02552 LcrH_SycD type III s 99.5 1.5E-12 3.2E-17 110.8 15.1 116 56-171 5-120 (135)
111 PRK15179 Vi polysaccharide bio 99.5 1.6E-11 3.5E-16 129.9 24.9 138 63-200 81-218 (694)
112 PRK15179 Vi polysaccharide bio 99.5 7.1E-12 1.5E-16 132.6 22.1 147 91-239 75-221 (694)
113 KOG1130 Predicted G-alpha GTPa 99.5 1.2E-12 2.7E-17 121.5 14.2 289 73-377 22-344 (639)
114 TIGR02552 LcrH_SycD type III s 99.4 5.2E-12 1.1E-16 107.4 16.7 117 89-205 4-120 (135)
115 KOG0553 TPR repeat-containing 99.4 2.5E-12 5.4E-17 115.7 13.8 120 34-153 81-200 (304)
116 KOG1128 Uncharacterized conser 99.4 9.6E-12 2.1E-16 124.4 18.8 226 27-273 391-616 (777)
117 COG4783 Putative Zn-dependent 99.4 2.2E-10 4.8E-15 110.1 25.1 153 65-236 303-455 (484)
118 PRK15363 pathogenicity island 99.4 2.2E-11 4.8E-16 100.4 15.9 102 65-166 32-133 (157)
119 PRK15363 pathogenicity island 99.4 1.8E-11 3.9E-16 101.0 14.7 102 31-132 32-133 (157)
120 PF04733 Coatomer_E: Coatomer 99.4 3.3E-12 7.2E-17 121.3 12.0 160 211-381 107-269 (290)
121 KOG1128 Uncharacterized conser 99.4 3.7E-10 8E-15 113.3 26.2 295 65-381 395-705 (777)
122 PF04733 Coatomer_E: Coatomer 99.4 1.4E-11 3E-16 117.0 15.2 133 210-348 135-270 (290)
123 KOG0553 TPR repeat-containing 99.3 1.9E-11 4.1E-16 110.1 13.5 112 71-182 84-195 (304)
124 COG4783 Putative Zn-dependent 99.3 9.7E-10 2.1E-14 105.8 25.1 153 99-274 303-455 (484)
125 PLN03088 SGT1, suppressor of 99.3 6.3E-11 1.4E-15 117.2 16.1 114 36-149 4-117 (356)
126 PRK10866 outer membrane biogen 99.3 8.4E-10 1.8E-14 102.4 22.5 184 32-232 30-238 (243)
127 PF13525 YfiO: Outer membrane 99.3 7.6E-10 1.6E-14 100.4 19.1 176 33-225 4-197 (203)
128 KOG3617 WD40 and TPR repeat-co 99.3 5.2E-07 1.1E-11 92.0 40.4 331 40-423 806-1174(1416)
129 KOG2053 Mitochondrial inherita 99.2 9.7E-07 2.1E-11 91.4 42.6 131 41-172 16-146 (932)
130 PRK10866 outer membrane biogen 99.2 3.6E-09 7.8E-14 98.2 22.9 185 67-271 31-239 (243)
131 PLN03088 SGT1, suppressor of 99.2 3.8E-10 8.1E-15 111.8 16.3 112 71-182 5-116 (356)
132 PF13525 YfiO: Outer membrane 99.2 3.1E-09 6.8E-14 96.4 19.5 179 67-265 4-199 (203)
133 COG4235 Cytochrome c biogenesi 99.2 1.1E-09 2.4E-14 99.9 15.8 123 84-206 138-263 (287)
134 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.3E-09 2.8E-14 90.4 13.8 104 35-138 3-112 (119)
135 COG4235 Cytochrome c biogenesi 99.1 3.4E-09 7.3E-14 96.8 17.2 136 117-254 137-275 (287)
136 PF09976 TPR_21: Tetratricopep 99.1 3.7E-09 8E-14 90.4 16.5 129 34-163 11-145 (145)
137 PRK10153 DNA-binding transcrip 99.1 4E-09 8.8E-14 108.6 19.1 121 84-205 358-488 (517)
138 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.2E-09 4.8E-14 89.0 14.1 103 69-171 3-111 (119)
139 KOG1941 Acetylcholine receptor 99.1 9.3E-08 2E-12 88.2 24.7 309 35-373 7-356 (518)
140 KOG2053 Mitochondrial inherita 99.1 3.3E-05 7.1E-10 80.5 51.0 226 79-308 20-255 (932)
141 COG4785 NlpI Lipoprotein NlpI, 99.1 2.4E-08 5.1E-13 85.3 18.7 221 67-296 64-292 (297)
142 PRK11906 transcriptional regul 99.1 1.7E-08 3.7E-13 98.1 20.0 135 36-170 257-406 (458)
143 PF14938 SNAP: Soluble NSF att 99.1 3.2E-08 6.9E-13 95.2 22.2 125 151-275 89-227 (282)
144 KOG3081 Vesicle coat complex C 99.1 9.9E-08 2.1E-12 84.6 22.7 256 110-382 16-276 (299)
145 CHL00033 ycf3 photosystem I as 99.1 5.6E-09 1.2E-13 92.1 15.2 106 45-150 10-120 (168)
146 COG4785 NlpI Lipoprotein NlpI, 99.1 2.4E-08 5.2E-13 85.2 17.5 221 102-330 65-291 (297)
147 KOG1941 Acetylcholine receptor 99.0 1.5E-07 3.3E-12 86.9 23.5 239 104-342 85-359 (518)
148 PRK10153 DNA-binding transcrip 99.0 1.4E-08 2.9E-13 104.8 18.8 144 27-171 332-488 (517)
149 COG3898 Uncharacterized membra 99.0 1.2E-06 2.5E-11 82.1 28.8 293 36-343 86-392 (531)
150 PRK02603 photosystem I assembl 99.0 1.6E-08 3.4E-13 89.5 16.5 118 66-203 33-153 (172)
151 PF12895 Apc3: Anaphase-promot 99.0 1.2E-09 2.6E-14 83.4 7.8 81 47-128 2-84 (84)
152 PF13414 TPR_11: TPR repeat; P 99.0 1.5E-09 3.2E-14 79.4 7.8 64 69-132 4-68 (69)
153 PRK02603 photosystem I assembl 99.0 1.4E-08 3E-13 89.9 15.3 95 34-128 35-132 (172)
154 PF09976 TPR_21: Tetratricopep 99.0 2.6E-08 5.6E-13 85.2 16.2 115 81-196 24-144 (145)
155 cd00189 TPR Tetratricopeptide 99.0 5.6E-09 1.2E-13 82.8 11.5 90 74-163 6-95 (100)
156 PF13432 TPR_16: Tetratricopep 99.0 1.4E-09 3.1E-14 78.3 7.0 63 39-101 2-64 (65)
157 PRK15331 chaperone protein Sic 99.0 9.3E-09 2E-13 85.4 12.5 97 34-130 37-133 (165)
158 CHL00033 ycf3 photosystem I as 99.0 1.4E-08 3.1E-13 89.5 14.5 122 82-203 13-153 (168)
159 KOG3617 WD40 and TPR repeat-co 99.0 3.8E-06 8.2E-11 86.0 32.8 227 80-341 740-994 (1416)
160 KOG3081 Vesicle coat complex C 99.0 3.9E-07 8.5E-12 80.9 22.8 256 41-314 15-276 (299)
161 cd00189 TPR Tetratricopeptide 99.0 7.1E-09 1.5E-13 82.2 11.4 99 36-134 2-100 (100)
162 PRK10803 tol-pal system protei 99.0 2.1E-08 4.5E-13 93.7 16.0 106 33-138 141-253 (263)
163 PRK15331 chaperone protein Sic 99.0 1E-08 2.2E-13 85.2 12.2 107 62-169 31-137 (165)
164 PF13414 TPR_11: TPR repeat; P 99.0 3.4E-09 7.3E-14 77.5 8.5 67 101-167 2-69 (69)
165 PRK11906 transcriptional regul 99.0 8.4E-08 1.8E-12 93.4 19.4 170 61-231 241-432 (458)
166 PF13432 TPR_16: Tetratricopep 98.9 5.3E-09 1.1E-13 75.3 8.3 64 73-136 2-65 (65)
167 KOG4648 Uncharacterized conser 98.9 1.5E-09 3.2E-14 99.0 6.3 107 39-145 102-208 (536)
168 KOG1070 rRNA processing protei 98.9 4.4E-07 9.5E-12 97.9 25.1 221 152-379 1440-1665(1710)
169 KOG2471 TPR repeat-containing 98.9 3.5E-07 7.7E-12 87.8 21.5 340 35-376 207-683 (696)
170 PF12895 Apc3: Anaphase-promot 98.9 4.7E-09 1E-13 80.0 7.4 78 116-194 3-82 (84)
171 COG4105 ComL DNA uptake lipopr 98.9 6.5E-07 1.4E-11 80.1 21.2 163 31-193 31-227 (254)
172 KOG1070 rRNA processing protei 98.9 1.6E-06 3.5E-11 93.7 27.5 237 84-326 1440-1682(1710)
173 COG3898 Uncharacterized membra 98.9 7.9E-06 1.7E-10 76.7 28.4 292 74-377 90-392 (531)
174 COG0457 NrfG FOG: TPR repeat [ 98.9 8.2E-06 1.8E-10 77.8 30.7 223 47-275 36-267 (291)
175 PRK10803 tol-pal system protei 98.9 9.9E-08 2.1E-12 89.1 16.2 104 101-204 141-251 (263)
176 KOG0543 FKBP-type peptidyl-pro 98.9 8.4E-08 1.8E-12 90.9 15.3 99 103-201 258-357 (397)
177 PF14938 SNAP: Soluble NSF att 98.9 3.7E-07 8E-12 87.9 20.2 202 177-379 42-268 (282)
178 COG0457 NrfG FOG: TPR repeat [ 98.9 2.3E-05 5.1E-10 74.6 33.3 222 81-307 36-264 (291)
179 KOG0543 FKBP-type peptidyl-pro 98.9 6E-08 1.3E-12 91.9 14.1 144 71-235 211-355 (397)
180 KOG2300 Uncharacterized conser 98.8 0.00014 3E-09 70.5 43.9 387 33-424 6-475 (629)
181 COG4700 Uncharacterized protei 98.8 3.4E-07 7.3E-12 76.4 15.9 159 259-432 71-231 (251)
182 KOG2300 Uncharacterized conser 98.8 9.5E-05 2.1E-09 71.7 34.2 192 326-622 287-500 (629)
183 KOG1914 mRNA cleavage and poly 98.8 6.3E-05 1.4E-09 73.9 33.4 381 29-424 15-502 (656)
184 PF14559 TPR_19: Tetratricopep 98.8 2E-08 4.4E-13 73.1 7.2 66 45-110 2-67 (68)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2E-07 4.3E-12 91.7 15.9 153 36-196 140-294 (395)
186 PF12688 TPR_5: Tetratrico pep 98.8 2.5E-07 5.4E-12 74.3 13.6 95 69-163 2-102 (120)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.5E-07 5.4E-12 91.0 16.2 124 105-233 172-295 (395)
188 COG1729 Uncharacterized protei 98.8 2.8E-07 6E-12 83.4 14.9 108 34-141 141-254 (262)
189 KOG2796 Uncharacterized conser 98.7 4.9E-06 1.1E-10 73.7 21.5 204 173-404 125-333 (366)
190 KOG3616 Selective LIM binding 98.7 3.6E-05 7.8E-10 78.0 30.1 235 105-376 664-910 (1636)
191 PF13512 TPR_18: Tetratricopep 98.7 4.8E-07 1E-11 73.7 14.0 87 31-117 7-99 (142)
192 PF12688 TPR_5: Tetratrico pep 98.7 5.8E-07 1.3E-11 72.2 14.0 96 103-198 2-103 (120)
193 KOG4234 TPR repeat-containing 98.7 3.6E-07 7.8E-12 77.2 13.0 106 74-179 101-211 (271)
194 KOG2471 TPR repeat-containing 98.7 2.8E-05 6.1E-10 75.2 26.5 294 30-327 13-382 (696)
195 KOG4648 Uncharacterized conser 98.7 1.1E-08 2.3E-13 93.5 3.1 235 106-353 101-340 (536)
196 PF14559 TPR_19: Tetratricopep 98.7 8.2E-08 1.8E-12 69.9 7.3 63 114-176 3-65 (68)
197 COG4700 Uncharacterized protei 98.7 4.5E-06 9.8E-11 69.9 17.9 148 83-234 71-221 (251)
198 COG1729 Uncharacterized protei 98.7 8.9E-07 1.9E-11 80.2 14.7 101 105-205 144-250 (262)
199 COG4105 ComL DNA uptake lipopr 98.6 3.6E-05 7.7E-10 69.2 24.2 190 135-347 33-237 (254)
200 PF13371 TPR_9: Tetratricopept 98.6 3E-07 6.6E-12 68.0 8.8 62 111-172 4-65 (73)
201 PF13371 TPR_9: Tetratricopept 98.6 3.1E-07 6.7E-12 67.9 8.3 65 42-106 3-67 (73)
202 KOG1914 mRNA cleavage and poly 98.5 0.00053 1.2E-08 67.7 31.0 354 58-426 10-467 (656)
203 PF13512 TPR_18: Tetratricopep 98.5 4.3E-06 9.3E-11 68.2 13.8 85 67-151 9-99 (142)
204 KOG1586 Protein required for f 98.5 4.3E-05 9.2E-10 66.7 20.3 187 28-215 28-240 (288)
205 KOG4234 TPR repeat-containing 98.5 1.9E-06 4.2E-11 72.9 11.6 102 104-205 97-203 (271)
206 KOG0985 Vesicle coat protein c 98.4 0.00083 1.8E-08 71.2 29.6 272 41-361 1055-1326(1666)
207 KOG2796 Uncharacterized conser 98.4 8.2E-05 1.8E-09 66.2 18.8 164 41-204 129-320 (366)
208 KOG4555 TPR repeat-containing 98.3 2.6E-05 5.6E-10 61.2 13.5 97 37-133 46-146 (175)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 8.6E-06 1.9E-10 79.6 13.5 69 63-131 70-141 (453)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.4E-06 9.5E-11 81.6 10.1 68 98-165 71-141 (453)
211 KOG4507 Uncharacterized conser 98.3 0.00011 2.4E-09 72.8 19.6 114 56-169 201-316 (886)
212 KOG4642 Chaperone-dependent E3 98.3 4.4E-06 9.5E-11 73.0 8.6 103 29-131 5-107 (284)
213 KOG2610 Uncharacterized conser 98.3 0.00039 8.5E-09 64.3 21.1 161 72-232 107-273 (491)
214 PF06552 TOM20_plant: Plant sp 98.3 9.8E-06 2.1E-10 68.2 10.1 66 50-115 7-82 (186)
215 COG3118 Thioredoxin domain-con 98.2 0.00014 3.1E-09 66.6 17.9 162 32-194 132-296 (304)
216 PF13424 TPR_12: Tetratricopep 98.2 2.1E-06 4.6E-11 64.4 5.0 63 68-130 5-74 (78)
217 KOG4555 TPR repeat-containing 98.2 7.4E-05 1.6E-09 58.7 13.1 93 73-165 48-144 (175)
218 KOG1258 mRNA processing protei 98.2 0.0099 2.1E-07 60.3 38.4 366 51-426 62-473 (577)
219 PF06552 TOM20_plant: Plant sp 98.2 1.9E-05 4.2E-10 66.5 10.3 87 84-170 7-114 (186)
220 PF04184 ST7: ST7 protein; In 98.2 0.00036 7.7E-09 68.6 20.1 163 41-205 175-381 (539)
221 KOG1586 Protein required for f 98.1 0.0031 6.8E-08 55.5 23.0 86 114-199 85-183 (288)
222 KOG3616 Selective LIM binding 98.1 0.015 3.4E-07 59.8 38.5 334 44-418 454-848 (1636)
223 PF13424 TPR_12: Tetratricopep 98.1 6E-06 1.3E-10 61.9 5.4 66 100-165 3-75 (78)
224 KOG2610 Uncharacterized conser 98.1 0.00031 6.6E-09 65.0 16.6 159 109-269 110-272 (491)
225 PF13428 TPR_14: Tetratricopep 98.1 1E-05 2.2E-10 52.3 5.2 43 314-356 1-43 (44)
226 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.8E-09 70.0 15.1 132 71-202 4-139 (280)
227 PF10300 DUF3808: Protein of u 98.1 0.0033 7.1E-08 65.0 26.3 180 192-379 179-378 (468)
228 KOG1585 Protein required for f 98.1 0.0012 2.6E-08 58.4 19.1 166 70-235 33-219 (308)
229 KOG1550 Extracellular protein 98.0 0.0029 6.3E-08 67.1 26.1 279 50-345 228-540 (552)
230 KOG2041 WD40 repeat protein [G 98.0 0.022 4.8E-07 58.4 30.5 239 100-375 690-937 (1189)
231 KOG1585 Protein required for f 98.0 0.002 4.3E-08 57.1 20.0 119 255-374 121-253 (308)
232 PF05843 Suf: Suppressor of fo 98.0 0.00012 2.7E-09 70.0 14.0 134 104-237 3-138 (280)
233 PF04184 ST7: ST7 protein; In 98.0 0.00073 1.6E-08 66.5 19.0 195 142-353 174-385 (539)
234 KOG4642 Chaperone-dependent E3 98.0 6.7E-05 1.4E-09 65.8 10.7 92 108-199 16-107 (284)
235 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 51.6 4.9 38 105-142 4-41 (44)
236 KOG1258 mRNA processing protei 98.0 0.03 6.6E-07 56.9 36.2 315 85-424 62-396 (577)
237 KOG0376 Serine-threonine phosp 97.9 1.7E-05 3.7E-10 77.2 6.6 110 37-146 7-116 (476)
238 PF13281 DUF4071: Domain of un 97.9 0.0044 9.4E-08 60.4 22.5 118 67-185 140-274 (374)
239 KOG0985 Vesicle coat protein c 97.9 0.042 9E-07 59.0 30.7 323 41-423 991-1341(1666)
240 COG3118 Thioredoxin domain-con 97.9 0.00099 2.2E-08 61.2 16.8 152 68-220 134-286 (304)
241 PF13431 TPR_17: Tetratricopep 97.9 1.8E-05 3.8E-10 47.4 3.5 34 336-369 1-34 (34)
242 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.03 6.5E-07 54.5 28.3 377 28-423 36-531 (660)
243 COG2909 MalT ATP-dependent tra 97.8 0.067 1.5E-06 57.1 34.0 304 68-378 347-689 (894)
244 KOG4507 Uncharacterized conser 97.8 0.00094 2E-08 66.5 16.0 117 89-205 200-318 (886)
245 KOG1550 Extracellular protein 97.8 0.011 2.4E-07 62.8 24.9 277 84-380 228-541 (552)
246 PF13431 TPR_17: Tetratricopep 97.8 2.6E-05 5.7E-10 46.7 3.1 32 57-88 2-33 (34)
247 PF02259 FAT: FAT domain; Int 97.8 0.017 3.7E-07 58.2 25.7 292 41-346 5-341 (352)
248 KOG0545 Aryl-hydrocarbon recep 97.8 0.00077 1.7E-08 59.5 13.0 113 34-170 178-298 (329)
249 PF13281 DUF4071: Domain of un 97.8 0.0015 3.3E-08 63.5 16.4 177 244-425 141-336 (374)
250 KOG0545 Aryl-hydrocarbon recep 97.7 0.0012 2.5E-08 58.5 13.0 103 103-205 179-299 (329)
251 PF07079 DUF1347: Protein of u 97.6 0.073 1.6E-06 52.1 41.9 130 36-165 8-157 (549)
252 PF10345 Cohesin_load: Cohesin 97.6 0.14 3.1E-06 55.4 46.0 324 50-374 37-479 (608)
253 KOG0376 Serine-threonine phosp 97.6 9.1E-05 2E-09 72.3 6.2 110 71-180 7-116 (476)
254 PF10345 Cohesin_load: Cohesin 97.6 0.17 3.6E-06 54.9 34.5 275 28-303 51-428 (608)
255 PF00515 TPR_1: Tetratricopept 97.6 0.00015 3.2E-09 43.8 4.5 34 314-347 1-34 (34)
256 PRK13184 pknD serine/threonine 97.6 0.22 4.8E-06 55.4 32.1 370 41-421 482-923 (932)
257 KOG0530 Protein farnesyltransf 97.6 0.028 6E-07 50.7 19.7 185 32-218 40-233 (318)
258 PF07719 TPR_2: Tetratricopept 97.5 0.00024 5.2E-09 42.8 5.1 34 314-347 1-34 (34)
259 PF08631 SPO22: Meiosis protei 97.5 0.09 2E-06 50.5 27.8 124 44-167 3-152 (278)
260 PF10300 DUF3808: Protein of u 97.5 0.005 1.1E-07 63.7 17.7 181 157-344 178-377 (468)
261 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00057 1.2E-08 63.3 9.3 98 70-167 83-184 (390)
262 PF00515 TPR_1: Tetratricopept 97.5 0.00016 3.4E-09 43.7 3.8 30 70-99 3-32 (34)
263 COG2909 MalT ATP-dependent tra 97.5 0.2 4.4E-06 53.6 31.4 302 30-340 342-685 (894)
264 PF03704 BTAD: Bacterial trans 97.5 0.0036 7.7E-08 53.6 13.6 62 103-164 63-124 (146)
265 PF07719 TPR_2: Tetratricopept 97.5 0.00021 4.6E-09 43.1 4.3 29 71-99 4-32 (34)
266 PF08631 SPO22: Meiosis protei 97.5 0.11 2.3E-06 50.0 28.1 124 78-201 3-152 (278)
267 KOG0551 Hsp90 co-chaperone CNS 97.5 0.001 2.2E-08 61.7 10.3 108 273-380 75-185 (390)
268 PF02259 FAT: FAT domain; Int 97.4 0.032 6.9E-07 56.3 22.0 278 74-361 4-305 (352)
269 KOG2041 WD40 repeat protein [G 97.4 0.056 1.2E-06 55.6 22.0 192 46-269 675-877 (1189)
270 PF03704 BTAD: Bacterial trans 97.4 0.0048 1E-07 52.8 13.0 97 34-130 6-124 (146)
271 KOG0530 Protein farnesyltransf 97.4 0.094 2E-06 47.5 20.7 122 83-204 58-181 (318)
272 COG4649 Uncharacterized protei 97.4 0.037 7.9E-07 46.5 16.8 56 286-341 139-194 (221)
273 KOG1308 Hsp70-interacting prot 97.3 0.00024 5.3E-09 66.1 4.6 90 77-166 123-212 (377)
274 KOG0890 Protein kinase of the 97.3 0.41 8.9E-06 57.0 30.5 331 39-382 1388-1789(2382)
275 COG2976 Uncharacterized protei 97.3 0.024 5.2E-07 48.9 15.2 116 88-204 72-193 (207)
276 COG2976 Uncharacterized protei 97.2 0.027 5.7E-07 48.6 15.0 98 247-346 92-191 (207)
277 COG4649 Uncharacterized protei 97.2 0.049 1.1E-06 45.8 16.0 151 174-326 62-212 (221)
278 PF08424 NRDE-2: NRDE-2, neces 97.2 0.05 1.1E-06 53.4 18.9 110 55-164 6-130 (321)
279 PF07079 DUF1347: Protein of u 97.1 0.3 6.5E-06 48.1 33.9 130 70-199 8-157 (549)
280 PRK11619 lytic murein transgly 97.1 0.55 1.2E-05 50.7 33.0 128 34-172 33-165 (644)
281 KOG0890 Protein kinase of the 97.1 0.62 1.4E-05 55.6 28.6 134 222-358 1645-1799(2382)
282 PF08424 NRDE-2: NRDE-2, neces 97.0 0.074 1.6E-06 52.2 18.9 161 125-308 8-183 (321)
283 PF13181 TPR_8: Tetratricopept 97.0 0.0016 3.5E-08 39.1 4.6 33 315-347 2-34 (34)
284 COG0790 FOG: TPR repeat, SEL1 97.0 0.4 8.7E-06 46.7 24.6 169 41-220 48-236 (292)
285 PF04781 DUF627: Protein of un 96.9 0.013 2.8E-07 45.5 9.5 103 40-165 2-107 (111)
286 KOG1464 COP9 signalosome, subu 96.9 0.2 4.3E-06 45.5 18.0 51 46-96 39-93 (440)
287 PF09613 HrpB1_HrpK: Bacterial 96.9 0.027 5.8E-07 47.4 11.7 86 34-119 10-95 (160)
288 KOG3824 Huntingtin interacting 96.7 0.007 1.5E-07 55.6 7.9 76 34-109 116-191 (472)
289 KOG1308 Hsp70-interacting prot 96.7 0.002 4.3E-08 60.2 4.4 89 112-200 124-212 (377)
290 PF13181 TPR_8: Tetratricopept 96.7 0.0039 8.5E-08 37.4 4.3 23 108-130 7-29 (34)
291 PF13174 TPR_6: Tetratricopept 96.7 0.0046 1E-07 36.7 4.5 33 315-347 1-33 (33)
292 PF04910 Tcf25: Transcriptiona 96.6 0.12 2.5E-06 51.4 16.6 105 171-276 104-225 (360)
293 COG0790 FOG: TPR repeat, SEL1 96.6 0.82 1.8E-05 44.5 24.9 167 77-258 50-236 (292)
294 PF04910 Tcf25: Transcriptiona 96.5 0.16 3.4E-06 50.5 16.6 176 162-348 32-227 (360)
295 PRK11619 lytic murein transgly 96.5 1.7 3.6E-05 47.1 29.2 331 56-423 84-436 (644)
296 COG5191 Uncharacterized conser 96.5 0.0063 1.4E-07 56.0 6.1 87 591-682 92-179 (435)
297 PF13174 TPR_6: Tetratricopept 96.4 0.0075 1.6E-07 35.8 4.3 24 142-165 6-29 (33)
298 PF14561 TPR_20: Tetratricopep 96.4 0.056 1.2E-06 41.1 9.7 48 156-203 8-55 (90)
299 KOG1464 COP9 signalosome, subu 96.3 0.8 1.7E-05 41.8 18.4 118 245-362 146-286 (440)
300 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.2 2.6E-05 43.9 36.1 74 336-424 290-363 (660)
301 PF14561 TPR_20: Tetratricopep 96.3 0.056 1.2E-06 41.1 9.6 65 53-117 7-73 (90)
302 PF09613 HrpB1_HrpK: Bacterial 96.3 0.086 1.9E-06 44.4 11.1 81 71-151 13-93 (160)
303 PF13176 TPR_7: Tetratricopept 96.2 0.011 2.4E-07 35.9 4.2 28 316-343 1-28 (36)
304 COG5159 RPN6 26S proteasome re 96.2 1.1 2.3E-05 41.4 22.2 53 38-90 7-67 (421)
305 TIGR02561 HrpB1_HrpK type III 96.2 0.1 2.3E-06 43.0 10.8 84 35-118 11-94 (153)
306 KOG3783 Uncharacterized conser 96.1 1.1 2.4E-05 45.4 19.7 75 123-199 254-332 (546)
307 PF04781 DUF627: Protein of un 96.1 0.079 1.7E-06 41.3 9.3 46 154-199 62-107 (111)
308 KOG1310 WD40 repeat protein [G 96.1 0.03 6.6E-07 55.6 8.6 109 28-136 368-479 (758)
309 PF12968 DUF3856: Domain of Un 96.0 0.43 9.3E-06 37.5 12.8 93 37-129 12-127 (144)
310 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.044 9.5E-07 36.5 6.5 42 315-356 2-43 (53)
311 PF13176 TPR_7: Tetratricopept 96.0 0.015 3.3E-07 35.3 4.0 21 107-127 4-24 (36)
312 PRK10941 hypothetical protein; 95.9 0.1 2.2E-06 49.1 11.2 70 138-207 183-252 (269)
313 PRK10941 hypothetical protein; 95.8 0.14 3E-06 48.2 11.6 61 173-235 184-244 (269)
314 KOG2396 HAT (Half-A-TPR) repea 95.8 2.5 5.5E-05 42.5 29.5 332 32-376 103-558 (568)
315 PF14853 Fis1_TPR_C: Fis1 C-te 95.7 0.07 1.5E-06 35.6 6.6 34 139-172 4-37 (53)
316 PRK15180 Vi polysaccharide bio 95.6 0.14 3E-06 50.5 10.9 125 79-203 300-424 (831)
317 KOG3824 Huntingtin interacting 95.6 0.046 9.9E-07 50.4 7.2 72 108-179 122-193 (472)
318 KOG2396 HAT (Half-A-TPR) repea 95.3 3.8 8.1E-05 41.4 32.9 91 52-142 89-180 (568)
319 COG3914 Spy Predicted O-linked 95.3 0.81 1.8E-05 46.8 15.3 127 53-179 50-185 (620)
320 smart00028 TPR Tetratricopepti 95.2 0.037 8E-07 32.3 4.0 32 315-346 2-33 (34)
321 PF09986 DUF2225: Uncharacteri 95.2 0.49 1.1E-05 43.1 12.5 30 279-308 165-194 (214)
322 KOG1463 26S proteasome regulat 95.2 3.1 6.7E-05 39.6 22.5 57 37-93 7-73 (411)
323 PF09986 DUF2225: Uncharacteri 95.1 0.44 9.6E-06 43.3 12.2 69 207-275 119-196 (214)
324 KOG1538 Uncharacterized conser 95.1 1.2 2.6E-05 46.0 15.9 80 43-127 565-657 (1081)
325 smart00028 TPR Tetratricopepti 95.1 0.038 8.3E-07 32.2 3.8 30 70-99 3-32 (34)
326 KOG3364 Membrane protein invol 95.1 0.64 1.4E-05 37.6 11.1 78 278-355 31-112 (149)
327 KOG1538 Uncharacterized conser 95.0 1.8 3.8E-05 44.8 16.8 239 76-340 564-830 (1081)
328 KOG1839 Uncharacterized protei 95.0 0.39 8.4E-06 53.9 13.4 165 32-196 930-1125(1236)
329 TIGR02561 HrpB1_HrpK type III 94.9 0.4 8.7E-06 39.7 10.0 75 77-151 19-93 (153)
330 PF10602 RPN7: 26S proteasome 94.7 0.64 1.4E-05 40.9 11.8 61 138-198 38-101 (177)
331 PF10602 RPN7: 26S proteasome 94.6 0.63 1.4E-05 40.9 11.4 19 286-304 120-138 (177)
332 COG4976 Predicted methyltransf 94.6 0.064 1.4E-06 47.4 4.9 57 45-101 6-62 (287)
333 KOG3364 Membrane protein invol 94.5 0.85 1.8E-05 36.9 10.4 78 241-319 29-110 (149)
334 KOG2422 Uncharacterized conser 94.3 5.7 0.00012 40.9 18.3 48 47-94 251-310 (665)
335 COG3914 Spy Predicted O-linked 94.3 2.6 5.6E-05 43.4 16.0 123 83-205 46-177 (620)
336 PF04053 Coatomer_WDAD: Coatom 94.3 1.7 3.7E-05 44.5 15.3 159 42-232 269-428 (443)
337 PRK13184 pknD serine/threonine 94.1 13 0.00028 42.0 26.4 99 73-172 480-588 (932)
338 COG4976 Predicted methyltransf 94.1 0.094 2E-06 46.4 4.9 60 111-170 4-63 (287)
339 PF11207 DUF2989: Protein of u 94.0 0.77 1.7E-05 40.5 10.4 77 291-368 118-198 (203)
340 PF15015 NYD-SP12_N: Spermatog 93.9 0.44 9.6E-06 46.3 9.4 91 33-123 175-283 (569)
341 PF11207 DUF2989: Protein of u 93.9 3.5 7.6E-05 36.5 14.1 75 259-334 121-198 (203)
342 PF12968 DUF3856: Domain of Un 93.8 1.8 3.8E-05 34.2 10.7 91 180-270 19-126 (144)
343 PF10579 Rapsyn_N: Rapsyn N-te 93.8 0.55 1.2E-05 33.9 7.4 63 33-95 5-70 (80)
344 KOG4814 Uncharacterized conser 93.7 0.58 1.2E-05 48.1 10.3 94 72-165 358-457 (872)
345 KOG1463 26S proteasome regulat 93.7 6.8 0.00015 37.5 22.2 171 210-380 132-319 (411)
346 COG1747 Uncharacterized N-term 93.3 11 0.00023 38.4 22.2 98 99-199 63-160 (711)
347 KOG2422 Uncharacterized conser 93.2 12 0.00026 38.7 18.6 160 115-275 251-450 (665)
348 KOG1310 WD40 repeat protein [G 93.1 0.42 9.1E-06 47.9 8.1 89 116-204 388-479 (758)
349 KOG3783 Uncharacterized conser 93.0 12 0.00026 38.4 27.0 64 316-379 451-522 (546)
350 KOG4814 Uncharacterized conser 93.0 1.2 2.5E-05 46.1 11.0 91 109-199 361-457 (872)
351 COG5191 Uncharacterized conser 92.8 0.28 6.1E-06 45.6 6.1 77 98-174 103-180 (435)
352 PRK15180 Vi polysaccharide bio 92.8 12 0.00025 37.7 32.3 137 33-169 288-424 (831)
353 COG5159 RPN6 26S proteasome re 92.8 8.3 0.00018 35.9 20.9 274 72-345 7-316 (421)
354 KOG3807 Predicted membrane pro 92.8 8.9 0.00019 36.4 15.6 148 107-269 189-336 (556)
355 PRK12798 chemotaxis protein; R 92.6 12 0.00026 37.3 23.4 269 30-308 33-324 (421)
356 PF13374 TPR_10: Tetratricopep 92.6 0.27 5.8E-06 30.9 4.2 36 534-569 3-38 (42)
357 PF13374 TPR_10: Tetratricopep 92.5 0.31 6.8E-06 30.5 4.5 29 315-343 3-31 (42)
358 PF12862 Apc5: Anaphase-promot 92.4 1.7 3.6E-05 33.6 9.2 25 247-271 44-68 (94)
359 KOG1839 Uncharacterized protei 92.3 2.5 5.4E-05 47.9 13.5 165 71-235 935-1128(1236)
360 KOG3807 Predicted membrane pro 92.3 11 0.00023 36.0 18.7 195 142-353 190-401 (556)
361 KOG2581 26S proteasome regulat 91.9 14 0.0003 36.4 20.0 195 216-426 136-349 (493)
362 PF04053 Coatomer_WDAD: Coatom 91.9 2.4 5.3E-05 43.5 12.2 104 215-340 270-373 (443)
363 KOG2114 Vacuolar assembly/sort 91.9 22 0.00047 38.7 20.1 249 74-349 340-596 (933)
364 KOG2581 26S proteasome regulat 91.4 16 0.00034 36.1 19.1 143 28-170 118-281 (493)
365 PF12862 Apc5: Anaphase-promot 91.3 2.9 6.2E-05 32.2 9.4 27 209-235 44-70 (94)
366 COG3629 DnrI DNA-binding trans 90.9 5.2 0.00011 37.8 12.2 64 102-165 153-216 (280)
367 COG2912 Uncharacterized conser 90.7 3.6 7.9E-05 38.3 10.8 64 142-205 187-250 (269)
368 PF04190 DUF410: Protein of un 90.0 17 0.00038 34.4 22.2 32 331-362 211-242 (260)
369 PF07721 TPR_4: Tetratricopept 89.8 0.53 1.1E-05 25.9 3.0 20 71-90 4-23 (26)
370 PF07721 TPR_4: Tetratricopept 89.4 0.5 1.1E-05 26.0 2.7 15 320-334 7-21 (26)
371 PF09670 Cas_Cas02710: CRISPR- 89.3 5.7 0.00012 40.1 12.1 62 36-97 133-198 (379)
372 COG2912 Uncharacterized conser 89.2 1.6 3.4E-05 40.5 7.3 74 71-144 184-257 (269)
373 PF13041 PPR_2: PPR repeat fam 89.2 1.8 3.9E-05 28.5 5.9 43 279-321 3-45 (50)
374 COG3629 DnrI DNA-binding trans 89.0 2.3 5.1E-05 40.1 8.4 80 50-131 137-216 (280)
375 PF07720 TPR_3: Tetratricopept 88.9 1.8 4E-05 26.1 5.0 16 109-124 8-23 (36)
376 PF07720 TPR_3: Tetratricopept 88.8 1.8 3.8E-05 26.2 4.9 32 315-346 2-35 (36)
377 KOG4014 Uncharacterized conser 88.7 15 0.00033 31.8 13.2 170 47-235 48-233 (248)
378 KOG0529 Protein geranylgeranyl 87.7 31 0.00067 34.3 16.0 145 36-180 30-193 (421)
379 PF15015 NYD-SP12_N: Spermatog 87.4 2.8 6.1E-05 41.1 7.9 53 107-159 233-285 (569)
380 PF10516 SHNi-TPR: SHNi-TPR; 87.4 1.3 2.9E-05 27.0 3.8 29 315-343 2-30 (38)
381 PF04190 DUF410: Protein of un 87.1 28 0.0006 33.0 20.0 25 169-193 89-113 (260)
382 PF12739 TRAPPC-Trs85: ER-Golg 86.3 32 0.00069 35.4 15.6 95 105-199 211-329 (414)
383 PF10516 SHNi-TPR: SHNi-TPR; 86.3 1.3 2.7E-05 27.2 3.3 27 70-96 3-29 (38)
384 PF10579 Rapsyn_N: Rapsyn N-te 86.2 7.1 0.00015 28.5 7.5 53 75-127 13-68 (80)
385 PF11817 Foie-gras_1: Foie gra 86.2 30 0.00065 32.5 14.7 22 41-62 17-38 (247)
386 KOG0128 RNA-binding protein SA 85.8 59 0.0013 35.5 33.2 226 48-275 93-343 (881)
387 PF14863 Alkyl_sulf_dimr: Alky 85.2 3.2 6.9E-05 34.7 6.3 50 34-83 70-119 (141)
388 PF00244 14-3-3: 14-3-3 protei 85.0 33 0.00071 31.9 15.1 30 139-168 4-33 (236)
389 PF12854 PPR_1: PPR repeat 85.0 1.6 3.4E-05 26.0 3.3 28 393-420 6-33 (34)
390 COG4941 Predicted RNA polymera 84.6 39 0.00086 32.5 14.7 189 152-355 212-406 (415)
391 KOG0529 Protein geranylgeranyl 84.5 14 0.0003 36.6 11.0 127 49-175 90-234 (421)
392 PF13041 PPR_2: PPR repeat fam 84.5 4 8.7E-05 26.8 5.5 27 247-273 6-32 (50)
393 KOG0889 Histone acetyltransfer 84.2 1.4E+02 0.003 39.0 21.0 116 245-360 2737-2858(3550)
394 TIGR03504 FimV_Cterm FimV C-te 83.6 2 4.3E-05 27.4 3.4 24 174-197 3-26 (44)
395 PF00244 14-3-3: 14-3-3 protei 83.3 34 0.00075 31.8 13.0 59 36-94 3-63 (236)
396 smart00386 HAT HAT (Half-A-TPR 82.9 3.3 7.1E-05 23.8 4.2 30 328-357 1-30 (33)
397 smart00386 HAT HAT (Half-A-TPR 82.7 1.6 3.6E-05 25.2 2.8 31 587-617 1-31 (33)
398 PF10373 EST1_DNA_bind: Est1 D 82.5 6.6 0.00014 37.8 8.5 62 53-114 1-62 (278)
399 KOG4521 Nuclear pore complex, 82.4 63 0.0014 36.8 15.8 133 211-345 988-1134(1480)
400 PF10255 Paf67: RNA polymerase 82.2 60 0.0013 32.8 14.8 60 105-164 125-192 (404)
401 PF09670 Cas_Cas02710: CRISPR- 82.2 26 0.00057 35.4 12.6 18 326-343 253-270 (379)
402 COG3947 Response regulator con 81.3 7.1 0.00015 36.5 7.3 58 175-234 284-341 (361)
403 COG4455 ImpE Protein of avirul 80.7 20 0.00044 32.2 9.5 62 41-102 8-69 (273)
404 KOG0276 Vesicle coat complex C 80.6 35 0.00076 35.7 12.4 100 43-164 595-694 (794)
405 COG1747 Uncharacterized N-term 80.5 74 0.0016 32.8 26.0 173 70-251 68-246 (711)
406 PF12854 PPR_1: PPR repeat 80.1 4.5 9.8E-05 24.0 4.0 26 313-338 6-31 (34)
407 KOG2114 Vacuolar assembly/sort 79.7 1E+02 0.0022 33.9 25.1 107 41-154 341-449 (933)
408 COG3947 Response regulator con 79.4 24 0.00052 33.2 10.0 57 140-196 283-339 (361)
409 TIGR03504 FimV_Cterm FimV C-te 78.9 4.8 0.0001 25.6 4.0 25 38-62 3-27 (44)
410 COG4455 ImpE Protein of avirul 78.8 43 0.00092 30.2 10.9 61 144-204 9-69 (273)
411 PF11817 Foie-gras_1: Foie gra 77.5 19 0.00041 33.9 9.4 58 173-230 181-242 (247)
412 TIGR02710 CRISPR-associated pr 77.4 68 0.0015 32.1 13.3 55 39-93 135-196 (380)
413 PF10373 EST1_DNA_bind: Est1 D 77.4 8.6 0.00019 37.0 7.4 62 121-182 1-62 (278)
414 PF12753 Nro1: Nuclear pore co 76.3 32 0.00069 34.1 10.4 45 295-342 334-390 (404)
415 PRK12798 chemotaxis protein; R 75.7 93 0.002 31.3 21.7 228 41-272 87-323 (421)
416 KOG2063 Vacuolar assembly/sort 75.5 1.5E+02 0.0032 33.5 16.9 29 244-272 684-712 (877)
417 cd02682 MIT_AAA_Arch MIT: doma 74.4 18 0.00039 26.3 6.3 31 32-62 4-34 (75)
418 KOG0546 HSP90 co-chaperone CPR 74.1 6.1 0.00013 38.1 5.0 124 40-178 228-351 (372)
419 PF10255 Paf67: RNA polymerase 73.9 9.7 0.00021 38.2 6.6 29 313-341 163-191 (404)
420 PF02064 MAS20: MAS20 protein 73.1 14 0.0003 29.9 6.1 28 39-66 68-95 (121)
421 PF09797 NatB_MDM20: N-acetylt 73.1 35 0.00075 34.4 10.6 44 84-127 199-242 (365)
422 COG5187 RPN7 26S proteasome re 72.7 87 0.0019 29.6 14.0 105 170-275 115-223 (412)
423 PF01535 PPR: PPR repeat; Int 72.1 4.9 0.00011 22.7 2.7 28 396-423 2-29 (31)
424 smart00299 CLH Clathrin heavy 71.5 59 0.0013 27.1 15.7 36 147-182 18-53 (140)
425 smart00299 CLH Clathrin heavy 71.0 61 0.0013 27.1 14.6 118 45-181 18-136 (140)
426 KOG0128 RNA-binding protein SA 70.1 1.8E+02 0.0039 32.1 35.1 71 310-380 308-379 (881)
427 KOG2063 Vacuolar assembly/sort 69.5 1.1E+02 0.0025 34.4 13.9 168 209-376 507-712 (877)
428 PF07219 HemY_N: HemY protein 69.4 26 0.00056 27.8 7.0 49 35-83 60-108 (108)
429 TIGR00756 PPR pentatricopeptid 69.4 5.5 0.00012 23.2 2.6 29 396-424 2-30 (35)
430 PF14863 Alkyl_sulf_dimr: Alky 69.0 19 0.00041 30.2 6.3 49 315-363 71-119 (141)
431 PF13812 PPR_3: Pentatricopept 68.8 9.4 0.0002 22.1 3.5 29 396-424 3-31 (34)
432 KOG0686 COP9 signalosome, subu 67.1 1.3E+02 0.0029 30.1 12.1 164 208-377 152-333 (466)
433 TIGR03362 VI_chp_7 type VI sec 66.9 1.3E+02 0.0028 29.3 16.3 59 250-308 219-279 (301)
434 KOG0687 26S proteasome regulat 65.9 1.3E+02 0.0029 29.1 12.9 104 171-275 105-212 (393)
435 PF01535 PPR: PPR repeat; Int 65.6 11 0.00024 21.1 3.3 21 108-128 6-26 (31)
436 KOG0276 Vesicle coat complex C 65.4 1.2E+02 0.0025 32.2 11.9 127 41-196 621-747 (794)
437 PF13226 DUF4034: Domain of un 65.0 90 0.0019 29.7 10.6 136 40-187 6-150 (277)
438 PF04348 LppC: LppC putative l 65.0 2.1 4.6E-05 45.3 0.0 97 171-269 25-123 (536)
439 COG4941 Predicted RNA polymera 65.0 1.4E+02 0.0031 29.0 16.8 177 50-235 212-394 (415)
440 KOG0686 COP9 signalosome, subu 63.4 1.7E+02 0.0037 29.4 15.4 97 244-340 150-255 (466)
441 COG5536 BET4 Protein prenyltra 61.7 59 0.0013 30.6 8.3 121 85-205 91-228 (328)
442 COG5536 BET4 Protein prenyltra 60.4 1.5E+02 0.0033 28.0 12.4 127 118-250 90-233 (328)
443 TIGR03362 VI_chp_7 type VI sec 60.1 1.7E+02 0.0037 28.4 16.5 157 36-200 101-280 (301)
444 TIGR00756 PPR pentatricopeptid 59.9 25 0.00054 20.2 4.2 23 284-306 5-27 (35)
445 PHA02537 M terminase endonucle 59.4 19 0.0004 33.1 4.9 118 51-169 65-211 (230)
446 KOG1920 IkappaB kinase complex 59.2 3.4E+02 0.0074 31.6 20.8 114 245-375 940-1053(1265)
447 KOG4014 Uncharacterized conser 58.9 1.3E+02 0.0027 26.5 15.9 185 65-272 31-232 (248)
448 KOG0546 HSP90 co-chaperone CPR 58.7 9.5 0.00021 36.8 3.1 66 73-138 280-345 (372)
449 cd00280 TRFH Telomeric Repeat 58.0 56 0.0012 28.6 7.1 44 572-616 110-153 (200)
450 PF04090 RNA_pol_I_TF: RNA pol 56.7 1.5E+02 0.0032 26.6 10.9 59 70-128 43-102 (199)
451 KOG4521 Nuclear pore complex, 56.2 3.8E+02 0.0083 31.2 17.7 30 67-96 919-948 (1480)
452 cd02680 MIT_calpain7_2 MIT: do 55.9 22 0.00048 25.8 3.9 16 115-130 19-34 (75)
453 cd02681 MIT_calpain7_1 MIT: do 55.7 26 0.00057 25.6 4.3 31 33-63 5-35 (76)
454 PF04212 MIT: MIT (microtubule 55.7 33 0.00071 24.4 4.9 29 34-62 5-33 (69)
455 KOG4279 Serine/threonine prote 55.4 69 0.0015 34.6 8.7 170 207-379 202-397 (1226)
456 cd02683 MIT_1 MIT: domain cont 55.3 29 0.00063 25.5 4.5 30 33-62 5-34 (77)
457 smart00101 14_3_3 14-3-3 homol 55.2 1.8E+02 0.004 27.2 18.5 169 105-273 4-200 (244)
458 PF10037 MRP-S27: Mitochondria 53.9 2.4E+02 0.0051 29.1 12.1 60 249-308 108-167 (429)
459 KOG4279 Serine/threonine prote 53.9 1.8E+02 0.0038 31.7 11.2 116 67-184 200-334 (1226)
460 PF04348 LppC: LppC putative l 53.8 4.3 9.3E-05 43.1 0.0 93 209-302 27-121 (536)
461 PF12739 TRAPPC-Trs85: ER-Golg 53.3 2.7E+02 0.0059 28.6 16.7 159 173-345 211-401 (414)
462 PF11846 DUF3366: Domain of un 52.3 42 0.00091 30.1 6.2 44 89-133 132-175 (193)
463 cd02682 MIT_AAA_Arch MIT: doma 52.1 69 0.0015 23.3 5.8 18 321-338 13-30 (75)
464 PF10037 MRP-S27: Mitochondria 51.2 2.2E+02 0.0047 29.3 11.3 93 251-343 73-167 (429)
465 PF11846 DUF3366: Domain of un 50.8 59 0.0013 29.1 6.9 46 121-167 130-175 (193)
466 KOG4151 Myosin assembly protei 50.5 68 0.0015 34.9 7.9 107 36-142 55-167 (748)
467 PF06957 COPI_C: Coatomer (COP 49.9 1.3E+02 0.0029 30.6 9.5 41 569-609 296-336 (422)
468 PF04097 Nic96: Nup93/Nic96; 49.7 3.9E+02 0.0084 29.3 24.0 159 141-305 263-440 (613)
469 COG3107 LppC Putative lipoprot 48.9 3.4E+02 0.0074 28.5 16.0 100 243-345 62-164 (604)
470 PF13226 DUF4034: Domain of un 48.0 2.4E+02 0.0051 27.0 10.3 41 186-228 115-155 (277)
471 cd02680 MIT_calpain7_2 MIT: do 47.4 39 0.00085 24.6 4.0 30 34-63 6-35 (75)
472 COG5187 RPN7 26S proteasome re 47.4 2.6E+02 0.0056 26.6 12.7 104 204-308 113-221 (412)
473 PF04840 Vps16_C: Vps16, C-ter 46.5 3E+02 0.0065 27.1 27.9 106 251-375 184-289 (319)
474 COG4259 Uncharacterized protei 45.8 1.2E+02 0.0026 23.4 6.3 49 301-349 59-107 (121)
475 KOG0292 Vesicle coat complex C 45.3 3.8E+02 0.0082 30.1 12.2 127 32-158 989-1140(1202)
476 PF10952 DUF2753: Protein of u 45.1 1E+02 0.0022 24.9 6.2 24 107-130 6-29 (140)
477 COG3014 Uncharacterized protei 44.7 3.1E+02 0.0068 26.8 15.0 36 311-346 210-245 (449)
478 KOG2062 26S proteasome regulat 43.8 4.8E+02 0.01 28.7 20.2 297 46-358 369-689 (929)
479 cd02678 MIT_VPS4 MIT: domain c 43.8 59 0.0013 23.7 4.7 29 34-62 6-34 (75)
480 PF04097 Nic96: Nup93/Nic96; 43.3 4.8E+02 0.01 28.6 19.4 156 109-270 265-440 (613)
481 PF07219 HemY_N: HemY protein 42.9 1.2E+02 0.0026 24.0 6.7 25 73-97 64-88 (108)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 42.9 1.9E+02 0.0041 23.7 13.8 120 186-306 1-126 (126)
483 KOG3024 Uncharacterized conser 42.5 98 0.0021 29.2 6.7 122 546-670 19-152 (312)
484 PF14929 TAF1_subA: TAF RNA Po 42.3 4.3E+02 0.0093 28.3 12.2 111 116-233 323-439 (547)
485 smart00745 MIT Microtubule Int 42.1 63 0.0014 23.5 4.7 29 34-62 8-36 (77)
486 cd02679 MIT_spastin MIT: domai 41.9 52 0.0011 24.3 4.0 36 81-131 2-37 (79)
487 PF10952 DUF2753: Protein of u 41.8 1.2E+02 0.0026 24.6 6.1 27 37-63 4-30 (140)
488 KOG2062 26S proteasome regulat 41.8 5.2E+02 0.011 28.5 18.4 159 249-421 506-674 (929)
489 PF06957 COPI_C: Coatomer (COP 41.2 1.1E+02 0.0024 31.2 7.4 31 33-63 203-233 (422)
490 PF09205 DUF1955: Domain of un 41.1 2.1E+02 0.0045 23.8 16.1 38 35-72 3-40 (161)
491 KOG1920 IkappaB kinase complex 40.9 6.6E+02 0.014 29.5 24.5 21 283-303 1003-1023(1265)
492 PF09205 DUF1955: Domain of un 40.6 2.1E+02 0.0046 23.7 12.0 53 289-342 96-148 (161)
493 PF07163 Pex26: Pex26 protein; 40.5 3.3E+02 0.0072 25.9 15.1 135 208-372 37-182 (309)
494 cd02684 MIT_2 MIT: domain cont 40.2 68 0.0015 23.4 4.5 29 34-62 6-34 (75)
495 PF12921 ATP13: Mitochondrial 39.5 2.1E+02 0.0046 23.4 10.2 31 207-237 53-83 (126)
496 KOG4563 Cell cycle-regulated h 39.0 74 0.0016 31.2 5.6 61 30-90 37-105 (400)
497 KOG4151 Myosin assembly protei 38.6 92 0.002 34.0 6.8 119 51-177 44-168 (748)
498 smart00671 SEL1 Sel1-like repe 38.2 70 0.0015 18.6 3.7 13 83-95 20-32 (36)
499 cd02656 MIT MIT: domain contai 38.1 81 0.0018 22.8 4.7 29 34-62 6-34 (75)
500 PF00637 Clathrin: Region in C 37.8 9 0.0002 32.3 -0.5 116 285-411 13-142 (143)
No 1
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=1.4e-50 Score=405.15 Aligned_cols=628 Identities=29% Similarity=0.415 Sum_probs=508.9
Q ss_pred ccchhhhhhccccCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 005632 12 KTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY 91 (687)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 91 (687)
+++++.++++++...+..+++++..++.+|+.++..|++++|..++.+++.++|.++.+|+.+|.+|..+|+.+++...+
T Consensus 117 ~~s~~~~k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 117 EKSTGTKKRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred eecccCCccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 34445566666677778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q 005632 92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV- 170 (687)
Q Consensus 92 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~- 170 (687)
-.|..++|++.+.|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|...
T Consensus 197 llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 197 LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999322
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH-----------
Q 005632 171 ----DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV----------- 235 (687)
Q Consensus 171 ----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------- 235 (687)
+.....+..+...++-+.|++.++.++....+-.....+..++.++.....++.|..........
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 23345577788888889999999999985444333335788999999999999999888776651
Q ss_pred -----------h--ccCCCchHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHH
Q 005632 236 -----------R--FSGKELPLKL-KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301 (687)
Q Consensus 236 -----------~--~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 301 (687)
. +.+-+....+ ...++.+..+.++..+++..+...-...+.+.++.+..++.++...|++.+|+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1 1111222233 5555666666666777766666554444777999999999999999999999999
Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632 302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (687)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (687)
|..+.....-.+..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++..+|+.++|.+.+++....++.+
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99998764455788999999999999999999999999999999999999999999999999999999999988766554
Q ss_pred CCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCccc
Q 005632 382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSIL 461 (687)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (687)
. ....||....+.+....++...|+.++.+.....++...+.......+.+.++. ..... ..+
T Consensus 517 ~---e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~---------~~~~~---~~~-- 579 (895)
T KOG2076|consen 517 A---EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRR---------RAIAG---TTS-- 579 (895)
T ss_pred h---hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHH---------Hhhcc---ccc--
Confidence 4 377899999999999999999999999999999999877655444332221111 00000 000
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-CCCchhhhhhccCCCCCcccCcchhhHHHHHHH
Q 005632 462 CGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD-DTDDESQQEAFREPPLPNLLKNEENQCLIIDLC 540 (687)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 540 (687)
. ......+.. ..++..+..+... ....+. +.+ .......++..+|++++..++
T Consensus 580 ---~---~~~~~~~~~-----------------~~~~~k~~~~~~~~~~l~d~--~~~-~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 580 ---K---RYSELLKQI-----------------IRAREKATDDNVMEKALSDG--TEF-RAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred ---c---ccchhHHHH-----------------HHHHhccCchHHhhhcccch--hhh-hhhhhccCcHHHHHHHHHHHH
Confidence 0 001111110 0011111111000 000000 000 011112367889999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhh-----CCCCchhhHHHHH
Q 005632 541 KALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL-----HPYSLSAWNCYYK 615 (687)
Q Consensus 541 ~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~ 615 (687)
..+.+.|++++|+.++..++....+....++...+.++.+.+++..+++..|.+++|.++.. +|.-...|++...
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999988888778888899999999999999999999999999999 8988999997777
Q ss_pred HHHHhcCCcccccchHHHHHHHHhhCCCC-CCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632 616 VLSRMGKINSKHSKHSKFIRYLRAKYKDC-VPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL 686 (687)
Q Consensus 616 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~ 686 (687)
++...++ -....++++++..++|++ ++..++.||....++++..|+.+|.+++..+|++|+++||||
T Consensus 714 ~~~~~~q----~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 714 YFSKYGQ----RVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHH----HHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 7777777 467899999999999998 666789999999999999999999999999999999999997
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-45 Score=349.64 Aligned_cols=458 Identities=18% Similarity=0.131 Sum_probs=430.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
....+.+|...++.|+|.+|++....+...+|.+.+.+..++.++++..+++.....-..+++..|.-.+++.++|.++.
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 34477889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
..|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++-..|+..+|...|
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (687)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 273 (687)
.++++..|...- +|.++|.++..+|+...|+..|++++.+ +|....+++++|.+|...+.++.|+..|.+++..
T Consensus 208 lkAi~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 208 LKAIETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999999998775 7999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
.|. ...++.++|.+|.++|..+-|+..|+++++. .|.-+.++.++|.++...|+..+|+.+|.+++.+.|+++++..+
T Consensus 282 rpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred CCc-chhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 885 9999999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhh
Q 005632 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK 433 (687)
Q Consensus 354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 433 (687)
||.++.++|++++|..+|.++++.+|.-. .++.+||.+|.++|++++|+..|+..++-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~a------------aa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------- 418 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFA------------AAHNNLASIYKQQGNLDDAIMCYKEALRIK--------- 418 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhh------------hhhhhHHHHHHhcccHHHHHHHHHHHHhcC---------
Confidence 99999999999999999999999999876 499999999999999999999999988553
Q ss_pred hhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchh
Q 005632 434 VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES 513 (687)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (687)
T Consensus 419 -------------------------------------------------------------------------------- 418 (966)
T KOG4626|consen 419 -------------------------------------------------------------------------------- 418 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchh
Q 005632 514 QQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF 593 (687)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 593 (687)
|.-.+++..++.+|-..|+...|+..+.+|+.++|. -.+...-++.++--.|+..+|+
T Consensus 419 ----------------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt------~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 419 ----------------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT------FAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred ----------------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH------HHHHHhhHHHHhhccCCcHHHH
Confidence 223345667888899999999999999999998876 4566667788888899999999
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632 594 DCAKYILQLHPYSLSAWNCYYKVLSRMGK 622 (687)
Q Consensus 594 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 622 (687)
.-++..|+..|+.++++..+.+++.---+
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999888887665555
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-42 Score=398.80 Aligned_cols=582 Identities=16% Similarity=0.149 Sum_probs=477.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
....++..|.+++..|++++|+..+++++...|.++.++..++.++...|++++|+..+.+++..+|.++..+..+|.++
T Consensus 294 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (899)
T TIGR02917 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373 (899)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
...|++++|+.+|++++..+|++...+..+|.++...|++++|+..++++++..|+.......++..+...|++++|+..
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
+++.....|.++. ++..+|.++...|++++|+..|++++.. .|....++..++.++...|++++|...+++++.
T Consensus 454 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 454 AKKLEKKQPDNAS--LHNLLGAIYLGKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHhCCCCcH--HHHHHHHHHHhCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999888888765 6888999999999999999999999888 677778888899999999999999999999888
Q ss_pred hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHH
Q 005632 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL 352 (687)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 352 (687)
..|. +...+..++.++...|++++|+..++++... .|.+...+..++.++...|++++|+..++++++..|.++.++.
T Consensus 528 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 605 (899)
T TIGR02917 528 IDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605 (899)
T ss_pred hCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 8775 7888888999999999999999999988876 7888888888999999999999999999999988898889999
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhh
Q 005632 353 TLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQ 432 (687)
Q Consensus 353 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 432 (687)
.++.++...|++++|+..++++++..|.++ .++..++.++...|++++|+..+.++++..+.......
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSA------------LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998888877665 37888899999999999999999888876554322211
Q ss_pred h---hhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 005632 433 K---VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDT 509 (687)
Q Consensus 433 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (687)
. .....+....+......+....+...... ....... ...+ +-+....+...+....
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~-----~~~g---~~~~A~~~~~~~~~~~---- 733 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF--------ELEGDLY-----LRQK---DYPAAIQAYRKALKRA---- 733 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH--------HHHHHHH-----HHCC---CHHHHHHHHHHHHhhC----
Confidence 1 11112222233333333333332221100 0000000 0000 0001111111222111
Q ss_pred CchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCC
Q 005632 510 DDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDP 589 (687)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 589 (687)
|.. .....++.++...|++++|...+++++...|. ...+....+.++...|++
T Consensus 734 --------------------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 734 --------------------PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN------DAVLRTALAELYLAQKDY 786 (899)
T ss_pred --------------------CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCH
Confidence 222 45667899999999999999999999987766 456777888999999999
Q ss_pred cchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHH
Q 005632 590 NHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYL 669 (687)
Q Consensus 590 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 669 (687)
++|+.+++++++.+|+++.++..++.++...|+ .+|...+.++....|+++..+..+|.++...|++++|+..|+
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-----PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999998 569999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChhhhhhcc
Q 005632 670 EAYKLLPENPLINLKRL 686 (687)
Q Consensus 670 ~a~~~~P~~p~~~l~~~ 686 (687)
++++.+|++|.+.+.++
T Consensus 862 ~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 862 KAVNIAPEAAAIRYHLA 878 (899)
T ss_pred HHHhhCCCChHHHHHHH
Confidence 99999999999987765
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-42 Score=395.20 Aligned_cols=586 Identities=15% Similarity=0.080 Sum_probs=451.9
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+.....++..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 33455667788888889999999999999999899888889999999999999999999999998888888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (687)
++...|++++|+..|++++..+|.++.++..++.++...|++++|...++++++..|+++..++..|.++...|++++|+
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999899888888899999999999999999999999888888888888888888899999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 270 (687)
Q Consensus 191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 270 (687)
..++++++.+|+... .+..+|.++...|++++|...+.+++.. .|........++.++...|++++|+..++++
T Consensus 282 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 282 ETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILKY----APNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999888888764 5677888888899999999999988888 6666777788888888999999999999888
Q ss_pred hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH
Q 005632 271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 350 (687)
Q Consensus 271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 350 (687)
+...|. ++..+..+|.++...|++++|+.+|+++... .|.++..+..+|.++...|++++|+..++++++..|+...+
T Consensus 356 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 356 LGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 877764 7788888899999999999999999888876 78888888889999999999999999999999888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHH
Q 005632 351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 430 (687)
Q Consensus 351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 430 (687)
...++.++...|++++|+..+++.....|.++ .++..+|.++...|++++|++.|.++++..+.....
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNA------------SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 88888888888999999988888887777655 378889999999999999999998888655433221
Q ss_pred hhh-hh--hhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 005632 431 RQK-VK--VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD 507 (687)
Q Consensus 431 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (687)
... +. ...+....+.....+++...+... ..... .. ..+...+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~---l~-------------~~~~~~~------ 547 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNL------------RAILA---LA-------------GLYLRTG------ 547 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH------------HHHHH---HH-------------HHHHHcC------
Confidence 111 00 111111122222222222221110 00000 00 0000000
Q ss_pred CCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccC
Q 005632 508 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST 587 (687)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g 587 (687)
..+..... ....+..+|........++..+...|++++|+.+++.++...+. ....+...+.++...|
T Consensus 548 --~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 548 --NEEEAVAW----LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD------SPEAWLMLGRAQLAAG 615 (899)
T ss_pred --CHHHHHHH----HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcC
Confidence 00000000 00001235566677777888888888888888888888765544 3456677778888888
Q ss_pred CCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHH
Q 005632 588 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARC 667 (687)
Q Consensus 588 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~ 667 (687)
++++|+.+++.+++.+|+++.++..++.++...|+ +.+|...+.++...+|++..++..++.++...|+++.|+..
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN----YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888888888888888888888888 77888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCChhhhhhcc
Q 005632 668 YLEAYKLLPENPLINLKRL 686 (687)
Q Consensus 668 ~~~a~~~~P~~p~~~l~~~ 686 (687)
+.++....|++|.+...+|
T Consensus 692 ~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEG 710 (899)
T ss_pred HHHHHhhCcCChHHHHHHH
Confidence 8888888888887766554
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6e-40 Score=374.52 Aligned_cols=589 Identities=15% Similarity=0.111 Sum_probs=457.5
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHH-----
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW----- 105 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----- 105 (687)
+.....++.++..+...++.+.|.+.+++++.++|+++.++..++.++...|+.++|...++++++++|+++.++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~ 104 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT 104 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 446677999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 106 -----------KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 106 -----------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..|+++++.+|+++.++
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~ 184 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLR 184 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHH
Confidence 566788999999999999999999998888643 22233334456999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC----------------------------------CCCcHH------------
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHP----------------------------------SDADLS------------ 207 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p----------------------------------~~~~~~------------ 207 (687)
..+|.++...|++++|+..+++++...+ +.....
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 9999999999999999999998865432 111000
Q ss_pred ------HHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH--
Q 005632 208 ------VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-- 279 (687)
Q Consensus 208 ------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 279 (687)
....+|.++...|++++|+..|++++.. .|.+..++..+|.++...|++++|+..|++++...|....
T Consensus 265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 0113477888999999999999999999 7888899999999999999999999999999987774211
Q ss_pred -----------HHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632 280 -----------DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 280 -----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (687)
......|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 12235588899999999999999999988 899999999999999999999999999999999999998
Q ss_pred HHHHHHHHH------------------------------------------HHHcCCHHHHHHhcCCCCcCCcccCCCCC
Q 005632 349 DARLTLASL------------------------------------------LLEEAKEEEAITLLSPPKDLDSLDMNSDK 386 (687)
Q Consensus 349 ~~~~~la~~------------------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 386 (687)
.++..++.+ +...|++++|+..|++++..+|.++
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~---- 495 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV---- 495 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----
Confidence 776655544 4457889999999999998888765
Q ss_pred CChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhh-hh--hhhhhhhhhhhhHhhhccCCCCCccccc
Q 005632 387 SNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK-VK--VKRRLTKGILQQRTKIYNNLPTDSILCG 463 (687)
Q Consensus 387 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (687)
.+++.+|.+|...|++++|+..++++++..+........ .. ........+.....++......
T Consensus 496 --------~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~------ 561 (1157)
T PRK11447 496 --------WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN------ 561 (1157)
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC------
Confidence 388999999999999999999999988765443221111 00 0000000111111111100000
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHH
Q 005632 464 IRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKAL 543 (687)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (687)
..+.... ..++.. ...+....+...+. .+.+... +...|.+....+.++.++
T Consensus 562 -------~~~~~l~---~~l~~~--~~l~~a~~l~~~G~--------~~eA~~~--------l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 562 -------SNIQELA---QRLQSD--QVLETANRLRDSGK--------EAEAEAL--------LRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred -------hhHHHHH---HHHhhh--HHHHHHHHHHHCCC--------HHHHHHH--------HHhCCCCchHHHHHHHHH
Confidence 0000000 000000 00000011111110 1111111 124566677888999999
Q ss_pred HHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCC
Q 005632 544 ASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKI 623 (687)
Q Consensus 544 ~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 623 (687)
...|++++|+..+++++...|. +...+..++.++...|++++|+..++.+++..|+++.++..++.++...|+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~- 686 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD- 686 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC-
Confidence 9999999999999999998877 457777888899999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHhhCCCCCC------ccceeccccccccchHHHHHHHHHHHh---hCCCChh
Q 005632 624 NSKHSKHSKFIRYLRAKYKDCVP------PIIISGHQFTMASHHQDAARCYLEAYK---LLPENPL 680 (687)
Q Consensus 624 ~~~~~~a~~~~~~~~~~~p~~~~------~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~P~~p~ 680 (687)
+.+|...+.+++...|++++ .+...|.++...|+++.|+..|++|+. +.|..|-
T Consensus 687 ---~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 687 ---TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred ---HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 89999999999998887765 334569999999999999999999986 4455554
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-43 Score=334.88 Aligned_cols=371 Identities=17% Similarity=0.166 Sum_probs=341.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+...++-.+..+++..+++.....-..+++.+|...++|.++|.++...|++++|+..|+.++++.|+..++|.++|.++
T Consensus 81 ~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 81 NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 34445556778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+|.++++..|....+|.+||.++..+|+...|+..
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
|+++++++|...+ +|.++|.+|...+.|+.|+..|.+++.. .|....++-++|.+|..+|..+-|+..|+++++
T Consensus 241 y~eAvkldP~f~d--AYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 241 YEEAVKLDPNFLD--AYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HHHhhcCCCcchH--HHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 9999999999887 7889999999999999999999999998 888899999999999999999999999999999
Q ss_pred hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHH
Q 005632 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL 352 (687)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 352 (687)
..|. .++++.++|.++-..|+..+|..+|.+++.. .|..+++.+++|.++..+|.+++|..+|.++++..|+...++.
T Consensus 315 ~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 315 LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 8885 8999999999999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632 353 TLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 353 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
+||.+|.++|++++|+.+|+.++.+.|.-. +++.++|..|..+|+.+.|+..|.+.+.-
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fA------------da~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFA------------DALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHH------------HHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999765 59999999999999999998888887744
No 7
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-36 Score=303.30 Aligned_cols=557 Identities=15% Similarity=0.106 Sum_probs=425.3
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
..|+++..++.+|.+.+..|+|..|+.+|++++.++|. -++....+|.|+..+|+.+.|+..|.++++++|.+..++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 45788999999999999999999999999999999997 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005632 108 LLTFAVQKGD---TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQLFL 181 (687)
Q Consensus 108 la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~ 181 (687)
||.+-....+ +..++..+.++...+|.+|.++..++..++..|+|..+..+...++...... .+.++.+|++|.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9988776654 7789999999999999999999999999999999999999999998875433 456899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC---
Q 005632 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG--- 258 (687)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 258 (687)
.+|++++|..+|.++++.+|++... .++.+|.+++..|+++.++.+|++++.. .|........+|.+|...+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l-~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVL-PLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccc-cccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhh
Confidence 9999999999999999999988432 5778999999999999999999999998 7888888888888888775
Q ss_pred -CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc----cCCCcHHHHHHHHHHHHHhhcHHHH
Q 005632 259 -NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN----AGTDNGYLYLKLAECYLSLKERAHA 333 (687)
Q Consensus 259 -~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A 333 (687)
..+.|..++.+++...|. +.++|..++.++....-+.. +..|..++.. ..+--+..+.++|..++..|++++|
T Consensus 394 ~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred HHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 567788888888777664 77788888877765554444 7777666532 2345667777888888888888888
Q ss_pred HHHHHHHHHh-----cCCC-----HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHH
Q 005632 334 IMFFYKALDR-----FEDN-----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHI 403 (687)
Q Consensus 334 ~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 403 (687)
...|..++.. +++. ....++++.++...++++.|.+.|...+...|.-. .++..+|-.
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI------------d~ylRl~~m 539 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI------------DAYLRLGCM 539 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH------------HHHHHhhHH
Confidence 8888877765 1111 23467788888888888888888888877777654 367777766
Q ss_pred HHHcCCchHHHHHHHHHHHHh---hhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHH
Q 005632 404 YRAKGMPEDFVDAIFPLVCES---LCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARAR 480 (687)
Q Consensus 404 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (687)
....++..+|...+..++.-- ++..+.....-.++.....+......++...
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~------------------------- 594 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT------------------------- 594 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh-------------------------
Confidence 667777777877777766332 2211111110000000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHH------------HHHhhh
Q 005632 481 KKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA------------LASLQR 548 (687)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~ 548 (687)
...++.+ .++.|+.+ .-..+.
T Consensus 595 ----------------------------------------------~~~~D~Y-sliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 595 ----------------------------------------------STKTDAY-SLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred ----------------------------------------------ccCCchh-HHHHhhHHHHHHhcccccChHHHHHH
Confidence 0000000 11111111 335677
Q ss_pred HHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCccccc
Q 005632 549 YEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHS 628 (687)
Q Consensus 549 ~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 628 (687)
++.|++++.+++..+|.+ --..--.+.|.-..|++..|..+|.++.+...+..++|..+++++...|+ +.
T Consensus 628 ~~KAlq~y~kvL~~dpkN------~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q----y~ 697 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKN------MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ----YR 697 (1018)
T ss_pred HHHHHHHHHHHHhcCcch------hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH----HH
Confidence 889999999999888772 22222334555567999999999999999888899999999999999999 99
Q ss_pred chHHHHHHHHhhCC--CCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632 629 KHSKFIRYLRAKYK--DCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL 686 (687)
Q Consensus 629 ~a~~~~~~~~~~~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~ 686 (687)
.|...+..++.++- +++..+..+|.++...|.+.+|.....+|..+.|.||.+-|-+|
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999998733 34566778999999999999999999999999999999988765
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.9e-35 Score=335.07 Aligned_cols=511 Identities=12% Similarity=0.064 Sum_probs=387.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET-YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
..+.+|..+...|++++|+..|++++..+|.+... ......+....|++++|+..|++++..+|+++.++..+|.++..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 45788999999999999999999999998877542 22333444456999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC----------------------------------CCHHH--------------------HH
Q 005632 115 KGDTAQAMYYIRQAIRAEP----------------------------------KDISL--------------------RI 140 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p----------------------------------~~~~~--------------------~~ 140 (687)
.|++++|+..+++++...+ +.... ..
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 9999999999998765322 11100 01
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH------------H
Q 005632 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS------------V 208 (687)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------------~ 208 (687)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.... .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3377788899999999999999999999999999999999999999999999999999999875421 1
Q ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHH----
Q 005632 209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITE---- 284 (687)
Q Consensus 209 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---- 284 (687)
....+.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++...|. +..++..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 234577888999999999999999999 7777888999999999999999999999999887774 4443333
Q ss_pred --------------------------------------HHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Q 005632 285 --------------------------------------VADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326 (687)
Q Consensus 285 --------------------------------------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 326 (687)
+|.++...|++++|+..|++++.. .|+++.+++.+|.++..
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 445556778888888888888877 78888888888888888
Q ss_pred hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH
Q 005632 327 LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA 406 (687)
Q Consensus 327 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 406 (687)
.|++++|+..++++++..|+++.+++.++..+...|++++|+..++++.............. -........++..+..
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~--~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ--RLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH--HHhhhHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888887653322110000000 0011234577899999
Q ss_pred cCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHH
Q 005632 407 KGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKK 486 (687)
Q Consensus 407 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (687)
.|++++|++.+.. .+...... .. ...+... ......+..
T Consensus 586 ~G~~~eA~~~l~~----~p~~~~~~----~~----------La~~~~~------------------~g~~~~A~~----- 624 (1157)
T PRK11447 586 SGKEAEAEALLRQ----QPPSTRID----LT----------LADWAQQ------------------RGDYAAARA----- 624 (1157)
T ss_pred CCCHHHHHHHHHh----CCCCchHH----HH----------HHHHHHH------------------cCCHHHHHH-----
Confidence 9999999887662 11110000 00 0000000 000000000
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Q 005632 487 EALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNI 566 (687)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~ 566 (687)
.... .+..+|++.++...++.++...|++++|+..++.++...+.
T Consensus 625 ----------~y~~------------------------al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~- 669 (1157)
T PRK11447 625 ----------AYQR------------------------VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND- 669 (1157)
T ss_pred ----------HHHH------------------------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-
Confidence 0000 12346778889999999999999999999999999876655
Q ss_pred CchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCch------hhHHHHHHHHHhcCCcccccchHHHHHHHHh
Q 005632 567 LPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLS------AWNCYYKVLSRMGKINSKHSKHSKFIRYLRA 639 (687)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 639 (687)
...+....+.++...|++++|...++.++...|+++. ++..++.++...|+ ..+|...+++++.
T Consensus 670 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~----~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 -----SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ----PQQALETYKDAMV 739 (1157)
T ss_pred -----ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC----HHHHHHHHHHHHh
Confidence 3345556677888899999999999999998877653 55667889999999 8899999888875
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.6e-35 Score=320.03 Aligned_cols=540 Identities=11% Similarity=-0.027 Sum_probs=398.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+..+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 4566788899999999999999999999999999999999999999999999999999999999999999988888766
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF--------YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 184 (687)
+++++|+..|++++..+|++.+++..++.. |.+.++..++++ .+.+...|........++.+|..+|
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 666655555555 3333333444456666699999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHH
Q 005632 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILME-NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 263 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 263 (687)
++++|+..+.++.+..|.+.. ....++.+|.. .++ +++..+++.. ...+..++..++..+...|+.++|
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~--~~~~L~~ay~q~l~~-~~a~al~~~~-------lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAA--ERRQWFDVLLAGQLD-DRLLALQSQG-------IFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhCH-HHHHHHhchh-------cccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999998888765 46677777777 466 6666664431 124555566666666677766666
Q ss_pred HHHHHHHhhhC---ch----------------------------------------------------------------
Q 005632 264 EILFADLQWKN---AI---------------------------------------------------------------- 276 (687)
Q Consensus 264 ~~~~~~~~~~~---~~---------------------------------------------------------------- 276 (687)
...+++..... |.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE 346 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence 66665532110 00
Q ss_pred ---------------------------hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC---cHHHHHHHHHHHHH
Q 005632 277 ---------------------------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLS 326 (687)
Q Consensus 277 ---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~ 326 (687)
.+...+..++......|++++|..+|+.+... .++ ...+...++.+|..
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-CcccccCHHHHHHHHHHHHh
Confidence 13445556666777888888888888887764 221 23344467777766
Q ss_pred hhc-------------------------H---HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 327 LKE-------------------------R---AHAIMFFYKALDRFED--NIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 327 ~g~-------------------------~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
.+. . ..+...+.+++...|. ++.++..+|.++.. |+.++|+..+.++..
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 543 2 2233444555556677 89999999999987 899999999999888
Q ss_pred CCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCC
Q 005632 377 LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLP 456 (687)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (687)
..|.+. ....+|.++...|++++|+..+++++...+........+..
T Consensus 505 ~~Pd~~-------------~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a-------------------- 551 (987)
T PRK09782 505 RQPDAW-------------QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT-------------------- 551 (987)
T ss_pred hCCchH-------------HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH--------------------
Confidence 888541 46667888889999999999999876543221111000000
Q ss_pred CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHH
Q 005632 457 TDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLI 536 (687)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (687)
.++.+.. +....+..++.. ..|++....
T Consensus 552 -------------------------ll~~Gd~---~eA~~~l~qAL~------------------------l~P~~~~l~ 579 (987)
T PRK09782 552 -------------------------AQAAGNG---AARDRWLQQAEQ------------------------RGLGDNALY 579 (987)
T ss_pred -------------------------HHHCCCH---HHHHHHHHHHHh------------------------cCCccHHHH
Confidence 0000000 000111111111 123444444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632 537 IDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV 616 (687)
Q Consensus 537 ~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 616 (687)
..++..+...|++++|+..+++++...|. ...+...+.++...|++++|+..++.++..+|+++.+++.++.+
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45555556669999999999999887764 24566777888888999999999999999999999999999999
Q ss_pred HHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632 617 LSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL 686 (687)
Q Consensus 617 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~ 686 (687)
+...|+ ..++...+.+++..+|+++.++..+|+++...|+++.|+..|+++++++|++..|.+-.+
T Consensus 653 L~~~G~----~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 653 LWDSGD----IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 999998 788888999999999999999999999999999999999999999999999888776554
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=292.10 Aligned_cols=562 Identities=13% Similarity=0.067 Sum_probs=441.2
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHH
Q 005632 37 MLGEASLQYAYGNF--EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAV 113 (687)
Q Consensus 37 ~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 113 (687)
++.++..++..|+. +.|...|..++...|++..+++..|.+.+..|+|..|+.+|++++..+|.. ++....+|.|+.
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~ 210 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW 210 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH
Confidence 44455555556655 999999999999999999999999999999999999999999999999864 566788999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (687)
.+|+.+.|+..|+++++++|.+..++..||.+-....+ +..++..+.++...++.+|.++..|+..++..|++..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 99999999999999999999999999999988776654 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC-CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 191 GILEEYLKVHPSD-ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRLGNMEKAEILFA 268 (687)
Q Consensus 191 ~~~~~~~~~~p~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 268 (687)
.+...++...... .....++.+|..|..+|+|++|..+|.++++. ++.. ...++.+|..++..|+++.|..+|+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 9999998875332 22346899999999999999999999999988 4444 7778899999999999999999999
Q ss_pred HHhhhCchhhHHHHHHHHHHHHhcC----ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-
Q 005632 269 DLQWKNAIDHADLITEVADTLMSLG----HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR- 343 (687)
Q Consensus 269 ~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 343 (687)
+++...|. ..+....+|.+|...+ ..+.|..++.++... .|.+..+|..++.++....-+.. +..|..++..
T Consensus 367 kv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L 443 (1018)
T KOG2002|consen 367 KVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDIL 443 (1018)
T ss_pred HHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 99999985 9999999999998886 678899999999877 79999999999999987655544 9999998854
Q ss_pred ----cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632 344 ----FEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP 419 (687)
Q Consensus 344 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 419 (687)
.+--++.+.++|..++..|++.+|...|..++.........+.. --......|++|+++...++++.|.+.|..
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG--KSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--ccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 23347899999999999999999999999888762111110000 001234689999999999999999999999
Q ss_pred HHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005632 420 LVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKA 499 (687)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (687)
+++..|.-....-... .+....++.. .+. ..+.
T Consensus 522 Ilkehp~YId~ylRl~--------------~ma~~k~~~~------------------ea~---------------~~lk 554 (1018)
T KOG2002|consen 522 ILKEHPGYIDAYLRLG--------------CMARDKNNLY------------------EAS---------------LLLK 554 (1018)
T ss_pred HHHHCchhHHHHHHhh--------------HHHHhccCcH------------------HHH---------------HHHH
Confidence 9999865322211110 0111110000 000 0000
Q ss_pred hccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhh
Q 005632 500 AGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLG 579 (687)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~ 579 (687)
.+ +..+..+.++.--++..+.....+.-|-.-++..+..... . ++......+
T Consensus 555 ~~------------------------l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~---~D~YsliaL 606 (1018)
T KOG2002|consen 555 DA------------------------LNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST-K---TDAYSLIAL 606 (1018)
T ss_pred HH------------------------HhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-C---CchhHHHHh
Confidence 00 1123333445555556677777777777766555542211 0 111112222
Q ss_pred hhhhcc------------cCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCc
Q 005632 580 AKMAYD------------STDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPP 647 (687)
Q Consensus 580 ~~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 647 (687)
+.+++. .+.+++|+.+|.++|..+|.|..+-|-.+.++...|. +.+|...|..+.+.-.++..+
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~----~~~A~dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR----FSEARDIFSQVREATSDFEDV 682 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC----chHHHHHHHHHHHHHhhCCce
Confidence 333332 2567889999999999999999999999999999999 999999999999988889999
Q ss_pred cceeccccccccchHHHHHHHHHHHhhC-C-CChhhhhhcc
Q 005632 648 IIISGHQFTMASHHQDAARCYLEAYKLL-P-ENPLINLKRL 686 (687)
Q Consensus 648 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-P-~~p~~~l~~~ 686 (687)
++.+||++..+|+|..|+..|+.+++.. | +++-|..+||
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 9999999999999999999999998843 3 3466666654
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.5e-34 Score=310.57 Aligned_cols=449 Identities=13% Similarity=0.050 Sum_probs=356.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..+.++++++|++..++..+|.++..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999995 78899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
+|++++|+..|..+...++.+......+..... ...+...+...++..|.+...+..++..+. ......+...+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhh
Confidence 999999999998887776654433222222111 134566677777888877666666666543 223334444445
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHH---HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 195 EYLKVHPSDADLSVIDLLVAILM---ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 195 ~~~~~~p~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
.....++.... .+..++..+. ..++|++|+..|++++.. ....+....++..+|.++...|++++|+..+++++
T Consensus 282 ~~~~~~~~~~~--~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 282 DSNELDEETGN--GQLQLGLKSPESKADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred ccccccccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555443 3444554433 347899999999999986 22246677889999999999999999999999999
Q ss_pred hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH
Q 005632 272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR 351 (687)
Q Consensus 272 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 351 (687)
..+|. ....+..+|.++...|++++|+..|++++.. .|+++.+++.+|.++...|++++|+..|+++++++|++..++
T Consensus 359 ~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 359 ELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred HcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 98885 8889999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHh
Q 005632 352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALR 431 (687)
Q Consensus 352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 431 (687)
..+|.++..+|++++|+..+++++..+|.++ .++..+|.++..+|++++|++.|.+.+...++....
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~- 503 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAP------------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM- 503 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc-
Confidence 9999999999999999999999999999876 489999999999999999999999988654221000
Q ss_pred hhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 005632 432 QKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDD 511 (687)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (687)
T Consensus 504 -------------------------------------------------------------------------------- 503 (615)
T TIGR00990 504 -------------------------------------------------------------------------------- 503 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcc
Q 005632 512 ESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNH 591 (687)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 591 (687)
......++......+...|++++|+.++++++.+++. .......++.+++..|++++
T Consensus 504 -----------------~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~------~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 504 -----------------YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE------CDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred -----------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHccCHHH
Confidence 0000001111122233468999999999999887765 33455667888888999999
Q ss_pred hhHHHHHHHhhCCCCchhh
Q 005632 592 GFDCAKYILQLHPYSLSAW 610 (687)
Q Consensus 592 A~~~~~~~l~~~p~~~~~~ 610 (687)
|+.+++.+++..+.....+
T Consensus 561 Ai~~~e~A~~l~~~~~e~~ 579 (615)
T TIGR00990 561 ALKLFERAAELARTEGELV 579 (615)
T ss_pred HHHHHHHHHHHhccHHHHH
Confidence 9999999988877655533
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=8.2e-33 Score=297.15 Aligned_cols=467 Identities=15% Similarity=0.046 Sum_probs=358.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 147 (687)
...+..+|..++..|++++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHH
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~ 227 (687)
.+|++++|+..|..+...++.+......+...... ..+...+...+...|.+.. .+..++..+. ......+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP--SVTFVGNYLQ-SFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC--CHHHHHHHHH-HccCCcchh
Confidence 99999999999988887766544332222221111 3455666677777777655 3445555432 222222222
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHH---HHcCCHHHHHHHHHHHhhhC--chhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632 228 HIEHAQIVRFSGKELPLKLKVKAGICY---LRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYY 302 (687)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 302 (687)
.+...... .+.....+..++..+ ...+.+++|+..|++++... .+....++..+|.++...|++++|+..|
T Consensus 279 ~~~~~~~~----~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 279 GLEDSNEL----DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhccccc----ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23333332 233333344444433 23478999999999998753 2347788999999999999999999999
Q ss_pred HHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632 303 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (687)
Q Consensus 303 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (687)
++++.. .|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.+.
T Consensus 355 ~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 355 SKSIEL-DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 999987 8999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccc
Q 005632 383 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILC 462 (687)
Q Consensus 383 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (687)
.++..+|.++..+|++++|+..+.++++..
T Consensus 434 ------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------------------------------------- 463 (615)
T TIGR00990 434 ------------FSHIQLGVTQYKEGSIASSMATFRRCKKNF-------------------------------------- 463 (615)
T ss_pred ------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------------------
Confidence 488999999999999999999998887543
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHH
Q 005632 463 GIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA 542 (687)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 542 (687)
|....+...++.+
T Consensus 464 -------------------------------------------------------------------P~~~~~~~~lg~~ 476 (615)
T TIGR00990 464 -------------------------------------------------------------------PEAPDVYNYYGEL 476 (615)
T ss_pred -------------------------------------------------------------------CCChHHHHHHHHH
Confidence 2233455677889
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhc-ccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 005632 543 LASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAY-DSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG 621 (687)
Q Consensus 543 ~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 621 (687)
+...|++++|+..+++++.+.+...............+.+++ ..|++++|+.++++++..+|++..++..++.++...|
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 999999999999999999987652111111111111222223 3589999999999999999999988999999999999
Q ss_pred CCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCC
Q 005632 622 KINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLP 676 (687)
Q Consensus 622 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P 676 (687)
+ +.+|..++.++....+.... ......+..|+....++-+-.|
T Consensus 557 ~----~~eAi~~~e~A~~l~~~~~e--------~~~a~~~~~a~~~~~~~~~~~~ 599 (615)
T TIGR00990 557 D----VDEALKLFERAAELARTEGE--------LVQAISYAEATRTQIQVQEDYP 599 (615)
T ss_pred C----HHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHHHHHhH
Confidence 8 78888888887776443221 1122345555555555554444
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-31 Score=289.87 Aligned_cols=543 Identities=11% Similarity=0.020 Sum_probs=411.0
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|.+....+..+..++..|++++|+..++++++.+|++...+..++.+ +++++|+..|++++..+|++.+++..++.
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 33455668889999999999999999999999999999888888766 99999999999999999999999999988
Q ss_pred H--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 111 F--------AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 111 ~--------~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
. |.+.++..+++. .+.+..+|........++.+|..+|++++|+..+.++++..|.+......++.+|..
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7 555544444544 333333333445566668999999999999999999999888888888888888777
Q ss_pred -cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc------------------------
Q 005632 183 -CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF------------------------ 237 (687)
Q Consensus 183 -~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------------ 237 (687)
+++ +++..+++..++ .++ .++..++..+...|+.++|...+++.-....
T Consensus 229 ~l~~-~~a~al~~~~lk---~d~--~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 229 GQLD-DRLLALQSQGIF---TDP--QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred hhCH-HHHHHHhchhcc---cCH--HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 466 666666554222 222 2566777777777777777766665221100
Q ss_pred -------------------------------------------------------------------cCCCchHHHHHHH
Q 005632 238 -------------------------------------------------------------------SGKELPLKLKVKA 250 (687)
Q Consensus 238 -------------------------------------------------------------------~~~~~~~~~~~~l 250 (687)
...|.+...+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 0124556667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhCchh--hHHHHHHHHHHHHhcCC---hHHH-------------------------HH
Q 005632 251 GICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGH---SNSA-------------------------LK 300 (687)
Q Consensus 251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~---~~~A-------------------------~~ 300 (687)
+....+.|++++|...|+.+....... .......++.++...+. ...+ ..
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 888889999999999999987742211 22344477777766654 2222 22
Q ss_pred HHHHhhhccCCC--cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632 301 YYHFLETNAGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLD 378 (687)
Q Consensus 301 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 378 (687)
.+..++.. .|. ++.+++.+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..++++....
T Consensus 463 ~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 463 AIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 33333333 466 89999999999998 899999999999999999865 46677888889999999999999987665
Q ss_pred cccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCC
Q 005632 379 SLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTD 458 (687)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (687)
|.+ ..++.+|.++...|++++|+..+.++++..+............. ....
T Consensus 540 p~~-------------~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l-------------~~~G--- 590 (987)
T PRK09782 540 MSN-------------EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR-------------YIPG--- 590 (987)
T ss_pred CCc-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-------------HhCC---
Confidence 543 25688999999999999999999999876433211100000000 0000
Q ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHH
Q 005632 459 SILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIID 538 (687)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (687)
....+ .....+++ ..+|. ......
T Consensus 591 ----------------r~~eA---------------l~~~~~AL------------------------~l~P~-~~a~~~ 614 (987)
T PRK09782 591 ----------------QPELA---------------LNDLTRSL------------------------NIAPS-ANAYVA 614 (987)
T ss_pred ----------------CHHHH---------------HHHHHHHH------------------------HhCCC-HHHHHH
Confidence 00000 11111111 22443 567789
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHH
Q 005632 539 LCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLS 618 (687)
Q Consensus 539 l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 618 (687)
++.++.+.|++++|+..+++++...|. +..+...++.++...|++++|+..++.+++.+|+++.++..++.++.
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999888 45777788888889999999999999999999999999999999999
Q ss_pred HhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhh
Q 005632 619 RMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLK 684 (687)
Q Consensus 619 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~ 684 (687)
..|+ +.+|...+.+++...|++.......|.+.....++..|.+.|.+++..+|+-. +...
T Consensus 689 ~lGd----~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~ 749 (987)
T PRK09782 689 RLDD----MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLR 749 (987)
T ss_pred HCCC----HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccc
Confidence 9999 89999999999999999999999999999999999999999999999999876 4433
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=3.4e-31 Score=282.87 Aligned_cols=370 Identities=14% Similarity=0.072 Sum_probs=330.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
.+..-+..+...|++++|+..++.++...|+++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 34555788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE 195 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 195 (687)
|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARA 202 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887765 48889999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHH----HHHHHHHHh
Q 005632 196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK----AEILFADLQ 271 (687)
Q Consensus 196 ~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~ 271 (687)
++...|..... ....++.++...|++++|+..+++++.. .|....++..+|.++...|++++ |+..|++++
T Consensus 203 ~l~~~~~~~~~-~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 203 LLPFFALERQE-SAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHhcCCCcchh-HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987644332 4456788999999999999999999998 78888999999999999999986 899999999
Q ss_pred hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH
Q 005632 272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR 351 (687)
Q Consensus 272 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 351 (687)
...|. +..++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..|++++..+|++...+
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 99885 8999999999999999999999999999987 899999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005632 352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (687)
Q Consensus 352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (687)
..++.++...|++++|+..|++++...|.+.. ..| .++...+...+...+.+.+...+...+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~~----~~~---~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHLP----QSF---EEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhch----hhH---HHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 88899999999999999999999999987642 111 145555555555555554443444443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=2.7e-29 Score=274.47 Aligned_cols=427 Identities=14% Similarity=0.074 Sum_probs=291.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
..+....|++++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44556688888888888888777777777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|+..++++.. .
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 88888888888888888 888888888888888888888888888888888888888888888888888887776654 4
Q ss_pred CCCCcH---HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhh-
Q 005632 201 PSDADL---SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM---EKAEILFADLQWK- 273 (687)
Q Consensus 201 p~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~- 273 (687)
|+.... .....+..+....+ ....+++ ++|+..++.++..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~---------------------------------~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPT---------------------------------RSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc---------------------------------cChhHHHHHHHHHHHHHHHHHhhc
Confidence 431100 00001111111000 0111122 4455555555432
Q ss_pred --Cchh---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC-
Q 005632 274 --NAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN- 347 (687)
Q Consensus 274 --~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 347 (687)
.|.. ...+......++...|++++|+..|++++....+....+...+|.++...|++++|+..|++++..+|.+
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 1111 1111121122334556666777766666654211111223334666777777777777777766666554
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCC-----CCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632 348 ---IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN-----SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP 419 (687)
Q Consensus 348 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 419 (687)
......++.++...|++++|+..++++....|.... ...++.- ...++..++.++...|++++|++.+.+
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~--~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD--WLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555666666677777777776666665543210 0001111 125778999999999999999999888
Q ss_pred HHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005632 420 LVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKA 499 (687)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (687)
++...
T Consensus 385 al~~~--------------------------------------------------------------------------- 389 (765)
T PRK10049 385 LAYNA--------------------------------------------------------------------------- 389 (765)
T ss_pred HHHhC---------------------------------------------------------------------------
Confidence 77553
Q ss_pred hccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhh
Q 005632 500 AGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLG 579 (687)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~ 579 (687)
|++..+.+.++.++...|++++|+..+++++.+.|. +..+.+..
T Consensus 390 ------------------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd------~~~l~~~~ 433 (765)
T PRK10049 390 ------------------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR------NINLEVEQ 433 (765)
T ss_pred ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChHHHHHH
Confidence 444567788999999999999999999999998887 45688888
Q ss_pred hhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHH
Q 005632 580 AKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYK 615 (687)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 615 (687)
+.+++..|++++|...++.+++..|+++.+..+--.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 889999999999999999999999999877654433
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=7.2e-30 Score=272.77 Aligned_cols=363 Identities=10% Similarity=0.019 Sum_probs=320.5
Q ss_pred HhcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRL---SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 121 (687)
+++.+++.-.-++...-+. ..++.......+......|++++|+..++.++...|+++.++..+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3455555555555444332 2334556677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005632 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201 (687)
Q Consensus 122 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 201 (687)
+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632 202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL 281 (687)
Q Consensus 202 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 281 (687)
++.. ++..++ .+...|++++|+..+++++...+ .........++.++...|++++|+..+++++...|. ++.+
T Consensus 176 ~~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~ 248 (656)
T PRK15174 176 PRGD--MIATCL-SFLNKSRLPEDHDLARALLPFFA---LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL 248 (656)
T ss_pred CCHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 8875 444443 47889999999999999887622 122334456688899999999999999999998875 8999
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632 282 ITEVADTLMSLGHSNS----ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (687)
+..+|.++...|++++ |+..|++++.. .|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999986 89999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632 358 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (687)
Q Consensus 358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 427 (687)
+...|++++|+..+++++...|... ..+..+|.++...|++++|++.|.++++..++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~------------~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTS------------KWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccch------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999999888764 256667999999999999999999999886553
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-29 Score=236.52 Aligned_cols=338 Identities=16% Similarity=0.160 Sum_probs=298.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..+-.+|+.++++|+|++||++|.++++..|+.+..|.+++-||...|+|++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHH------------------HHHHh--------------CCC---------------------------
Q 005632 114 QKGDTAQAMYYIR------------------QAIRA--------------EPK--------------------------- 134 (687)
Q Consensus 114 ~~g~~~~A~~~~~------------------~a~~~--------------~p~--------------------------- 134 (687)
.+|++++|+.-.. +.+.. .|.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999888865322 11110 000
Q ss_pred -----------------------------------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 135 -----------------------------------------D---------ISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 135 -----------------------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
+ ..++...|..++-.|++-.|.+.|..+++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 11244456666778999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchH
Q 005632 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244 (687)
Q Consensus 165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 244 (687)
++|.++..+..++.+|....+.++-...|..+.+++|.+++ +|+..|.+++-.+++++|+.-|++++.+ +|.+.
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~ 428 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISL----DPENA 428 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhc----Chhhh
Confidence 99999999999999999999999999999999999999998 7999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC------cHHHHH
Q 005632 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------NGYLYL 318 (687)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 318 (687)
..+..++.+.+++++++++...|+.+....|. .++++...|.++..+++++.|++.|..++.. .|. ++..+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-ccccccccccchhhh
Confidence 99999999999999999999999999999996 9999999999999999999999999999988 555 455555
Q ss_pred HHHHH-HHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632 319 KLAEC-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 319 ~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 379 (687)
..|.+ +...+++..|+.+++++++++|....++..||.+..++|+.++|+++|+++.....
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55443 33468999999999999999999999999999999999999999999998766543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.98 E-value=2.5e-28 Score=266.84 Aligned_cols=383 Identities=13% Similarity=0.060 Sum_probs=320.7
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+.....+...|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+++. +..+|.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 4455557788999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH----
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFL---- 181 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~---- 181 (687)
++...|++++|+..++++++..|+++.++..++.++...|..++|+..++++.. .|+.. .....+..+..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999987775 55421 11222222222
Q ss_pred -HcCCh---HHHHHHHHHHHHhCCCCCcHH-----HHHH-HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 005632 182 -KCGQT---ARSIGILEEYLKVHPSDADLS-----VIDL-LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG 251 (687)
Q Consensus 182 -~~g~~---~~A~~~~~~~~~~~p~~~~~~-----~~~~-la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (687)
..+++ ++|+..++.+++..|.++... +... ++ .+...|++++|+..|++++.. ++ +.+..+...++
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-~~--~~P~~a~~~la 279 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-GQ--IIPPWAQRWVA 279 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-CC--CCCHHHHHHHH
Confidence 22345 789999999997755544321 1112 33 346779999999999998876 21 12333444468
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhCchh---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCC-------------C--c
Q 005632 252 ICYLRLGNMEKAEILFADLQWKNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGT-------------D--N 313 (687)
Q Consensus 252 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------------~--~ 313 (687)
.++...|++++|+..|++++...|.. .......++.++...|++++|+..++++... .| + .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchH
Confidence 99999999999999999998766542 2456777888899999999999999998865 33 2 2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhh
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLN 393 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (687)
..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++..+|.+.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~----------- 427 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI----------- 427 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------
Confidence 457788999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhh
Q 005632 394 EKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQ 432 (687)
Q Consensus 394 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 432 (687)
.+++.+|.++...|++++|...+.++++..++......
T Consensus 428 -~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 428 -NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 49999999999999999999999999998877654444
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=7.5e-27 Score=249.14 Aligned_cols=465 Identities=13% Similarity=0.060 Sum_probs=371.9
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 108 (687)
-.|..+...+..+...++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34557778899999999999999999999999999999865555888999999999999999999994445555666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 8899999999999999999999999999999999999999999999999999999999986555 666777777888878
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC----------
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG---------- 258 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 258 (687)
|+..++++++.+|++.+ ++..+..++...|-...|.+...+--..+. ......+....+.-..+.+
T Consensus 188 AL~~~ekll~~~P~n~e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 188 ALQASSEAVRLAPTSEE--VLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999999987 678888999999999999887776443321 1111111111111122111
Q ss_pred --CHHHHHHHHHHHhh---hCchh---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH
Q 005632 259 --NMEKAEILFADLQW---KNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 330 (687)
Q Consensus 259 --~~~~A~~~~~~~~~---~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 330 (687)
-.+.|+..++.++. ..|+. ...+....-.++...|++.+++..|+.+.....+--+.+....|..|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23557777777665 33421 23345566777889999999999999888654444566888899999999999
Q ss_pred HHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcc-----cCCCCCCChhhhhHHHHHH
Q 005632 331 AHAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL-----DMNSDKSNPWWLNEKIIMK 399 (687)
Q Consensus 331 ~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~ 399 (687)
++|+.+|+.++...| ........|...+...+++++|..++++..+..|. ......+++-|. +....
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l 421 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTL 421 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHH
Confidence 999999999988653 23444578899999999999999999988875551 001123444454 68888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHH
Q 005632 400 LCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARA 479 (687)
Q Consensus 400 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (687)
++.++...|+..+|.+.++.++...
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a------------------------------------------------------- 446 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA------------------------------------------------------- 446 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence 9999999999999988888886554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005632 480 RKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLS 559 (687)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~a 559 (687)
|.+..+.+.+|.++...|++.+|..+++.+
T Consensus 447 --------------------------------------------------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 447 --------------------------------------------------PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred --------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455667788999999999999999999999
Q ss_pred HHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhH
Q 005632 560 MRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWN 611 (687)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 611 (687)
..+.|. ...+.+..+.+++..|++++|....+++++..|++...-.
T Consensus 477 ~~l~P~------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 477 ESLAPR------SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred hhhCCc------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 888776 5677888889999999999999999999999999986654
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.7e-27 Score=218.56 Aligned_cols=337 Identities=15% Similarity=0.131 Sum_probs=287.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 147 (687)
+..+-..|.-++..|+|++|+++|.++++++|+.+..|.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHH------------------HHHHh--------------C---CC------------------------
Q 005632 148 EIGDYEKAAESYE------------------QIQKL--------------F---PD------------------------ 168 (687)
Q Consensus 148 ~~g~~~~A~~~~~------------------~~~~~--------------~---p~------------------------ 168 (687)
.+|++.+|+.... +.++. . |.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999988865322 11110 0 00
Q ss_pred -----------------------------------------C---------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 169 -----------------------------------------N---------VDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 169 -----------------------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
+ ..++...|..++-.|++-.|...++.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 13344556667778889999999999999
Q ss_pred hCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh
Q 005632 199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH 278 (687)
Q Consensus 199 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 278 (687)
++|.... .|..++.+|....+.++....|.++..+ +|.++.+++..|.+++-++++++|+..|++++..+|. +
T Consensus 355 l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~ 427 (606)
T KOG0547|consen 355 LDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-N 427 (606)
T ss_pred cCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-h
Confidence 9988876 4778899999999999999999999998 8888899999999999999999999999999988885 8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC------CHHHHH
Q 005632 279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED------NIDARL 352 (687)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 352 (687)
.-.+..++.+.+++++++++...|+.+... .|..++.+...|.++..++++++|++.|++++++.|. ++..+.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 888999999999999999999999999877 8999999999999999999999999999999999987 554444
Q ss_pred HHHHHHH-HcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 353 TLASLLL-EEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 353 ~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..|.+.. -.+++..|+++++++++.+|... .++..||.+..++|+.++|++.|++.+...
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce------------~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCE------------QAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHH------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4443222 34889999999999999999875 499999999999999999999999987554
No 21
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=3.2e-25 Score=248.25 Aligned_cols=571 Identities=14% Similarity=0.090 Sum_probs=344.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC------------
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLS-PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP------------ 99 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------------ 99 (687)
.....-.....+...|++++|...|+.+.... +.+...+..+...+...+....|...+..++...+
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 33334444567788888999988888887642 22333444444444444444444444444433322
Q ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------
Q 005632 100 --------------------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--EPK----------------------- 134 (687)
Q Consensus 100 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~----------------------- 134 (687)
.+...|..+...|.+.|++++|+..|.++... .|+
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 23344555666666666666666666665432 222
Q ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CC
Q 005632 135 -----------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--HP 201 (687)
Q Consensus 135 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p 201 (687)
+..++..+...|.+.|++++|...|+++.. .+...|..+...|.+.|++++|+..|.++... .|
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 112233444555555666666665555432 23345555566666666666666666665543 23
Q ss_pred CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632 202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL 281 (687)
Q Consensus 202 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 281 (687)
+.. .+..+...+...|+.+.|.+.+..+.+. + ...+..++..+...|.+.|++++|..+|+++.. .+...
T Consensus 287 d~~---ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s 356 (857)
T PLN03077 287 DLM---TITSVISACELLGDERLGREMHGYVVKT-G--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS 356 (857)
T ss_pred Chh---HHHHHHHHHHhcCChHHHHHHHHHHHHh-C--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeee
Confidence 322 3555555556666666666666555544 1 234556677778888888888888888887642 25567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 005632 282 ITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLE 360 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 360 (687)
|..+...|.+.|++++|+++|+++.......+...+..+-..+...|++++|.+.+..+.+... .+..++..+...|.+
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 8888888888888888888888776554344555666666677888888888888888877643 346677788889999
Q ss_pred cCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHH--hhhhhhhh
Q 005632 361 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL--RQKVKVKR 438 (687)
Q Consensus 361 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~ 438 (687)
.|++++|.++|++..+.+. .+|..+...|...|+.++|++.|.++... ..++.. .......-
T Consensus 437 ~g~~~~A~~vf~~m~~~d~---------------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDV---------------ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500 (857)
T ss_pred cCCHHHHHHHHHhCCCCCe---------------eeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHh
Confidence 9999999999988765332 25678888888999999999999988753 111110 00000000
Q ss_pred hh--hhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhh
Q 005632 439 RL--TKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE 516 (687)
Q Consensus 439 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (687)
.. ......--..++...-..+.+ ....++ ..|.+.|. .+.+..
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~-------~~naLi--------------------~~y~k~G~--------~~~A~~ 545 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGF-------LPNALL--------------------DLYVRCGR--------MNYAWN 545 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccce-------echHHH--------------------HHHHHcCC--------HHHHHH
Confidence 00 000000000000000000000 000011 11111110 000001
Q ss_pred hccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHH-hhhhhhcccCCCcchhHH
Q 005632 517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRS-LGAKMAYDSTDPNHGFDC 595 (687)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~ 595 (687)
.+.. .+.+...+..++..|.+.|+.++|+.+++.+...... .+...+ ....++...|.+++|..+
T Consensus 546 ~f~~--------~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~------Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 546 QFNS--------HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN------PDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHh--------cCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CCcccHHHHHHHHhhcChHHHHHHH
Confidence 1000 0223344556777899999999999999998764322 123333 334667788999999999
Q ss_pred HHHHHhhCCC--CchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHh
Q 005632 596 AKYILQLHPY--SLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYK 673 (687)
Q Consensus 596 ~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 673 (687)
++.+.+.++- +...+.++..++.+.|+ +.+|.+++.++. ..|+....-.+++ .+...|+.+.|....+++++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~----~~eA~~~~~~m~-~~pd~~~~~aLl~-ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGK----LTEAYNFINKMP-ITPDPAVWGALLN-ACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCC----HHHHHHHHHHCC-CCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHh
Confidence 9999865543 34689999999999999 899999999874 3355433223333 55678999999999999999
Q ss_pred hCCCChhhhhhccC
Q 005632 674 LLPENPLINLKRLN 687 (687)
Q Consensus 674 ~~P~~p~~~l~~~~ 687 (687)
++|+++-.+..++|
T Consensus 686 l~p~~~~~y~ll~n 699 (857)
T PLN03077 686 LDPNSVGYYILLCN 699 (857)
T ss_pred hCCCCcchHHHHHH
Confidence 99999877766654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=6.8e-25 Score=234.25 Aligned_cols=478 Identities=11% Similarity=0.004 Sum_probs=363.4
Q ss_pred HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 61 VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140 (687)
Q Consensus 61 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 140 (687)
.-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.......
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34578899999999999999999999999999999999999655558888899999999999999999944444555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (687)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~ 220 (687)
.+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.... +..++.++...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---YMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---HHHHHHHHHhcc
Confidence 66889999999999999999999999999999999999999999999999999999999998543 345566666677
Q ss_pred hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 221 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
+..+|+..+++++.. .|....++..+..++...|-...|.+...+-.....+ ....+. +.+.|.+
T Consensus 184 ~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l----------~~~~~a~ 248 (822)
T PRK14574 184 RNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQL----------ERDAAAE 248 (822)
T ss_pred hHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHH----------HHHHHHH
Confidence 787799999999999 8888899999999999999999998877764332221 111111 1222333
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHhcCC
Q 005632 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI-------DARLTLASLLLEEAKEEEAITLLSP 373 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~ 373 (687)
..+-+... ...... .---.+.|+..++..+...|..| .+..-.-.++...|++.+++..|+.
T Consensus 249 ~vr~a~~~-~~~~~~----------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 249 QVRMAVLP-TRSETE----------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHhhcccc-cccchh----------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33222211 000111 01124667777777777433322 2334455677788999999999998
Q ss_pred CCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhcc
Q 005632 374 PKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYN 453 (687)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (687)
+......-|. -+....|..|..++++++|+.+|.+++....+.
T Consensus 318 l~~~~~~~P~-----------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~-------------------------- 360 (822)
T PRK14574 318 MEAEGYKMPD-----------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKT-------------------------- 360 (822)
T ss_pred hhhcCCCCCH-----------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--------------------------
Confidence 7755432221 378889999999999999999988887554210
Q ss_pred CCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhh
Q 005632 454 NLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQ 533 (687)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (687)
...|...
T Consensus 361 -------------------------------------------------------------------------~~~~~~~ 367 (822)
T PRK14574 361 -------------------------------------------------------------------------FRNSDDL 367 (822)
T ss_pred -------------------------------------------------------------------------cCCCcch
Confidence 0001111
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc---------cCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCC
Q 005632 534 CLIIDLCKALASLQRYEEASEIINLSMRLAYN---------ILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHP 604 (687)
Q Consensus 534 ~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 604 (687)
.....|.-.+...+++++|..++++.....|. ..+.+.-.+...+.+.++...|+..+|...++.++...|
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11235566788889999999999888875442 123444567777888888888999999999999999999
Q ss_pred CCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhh
Q 005632 605 YSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI 681 (687)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~ 681 (687)
.+..++..++.++...|. ..+|...++.+...+|++..+.+..|.+++..+++..|.......+...|+||-+
T Consensus 448 ~n~~l~~~~A~v~~~Rg~----p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 448 ANQNLRIALASIYLARDL----PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCHHHHHHHHHHHHhcCC----HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999998 7888888888888899999999999999999999999999999999999998754
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.5e-27 Score=228.49 Aligned_cols=309 Identities=17% Similarity=0.129 Sum_probs=272.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+....+.++......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-...|-.....-.+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 34455667777778888899999999977778888888999999999999999999999999999998777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
+.+.+--+--.+.+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|....++..+|.-+....++|.|..+
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 77777655555667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
|+.++..+|.+.. +|+.+|.+|.++++++.|.-.|++|+++ +|.+..+...+|.++.+.|+.++|+.++++++.
T Consensus 478 fr~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 478 FRKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 9999999999876 8999999999999999999999999999 888888899999999999999999999999988
Q ss_pred hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (687)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (687)
.+|. ++-..+..|.+++..+++++|+..++++... -|+...+++.+|.+|...|+.+.|+..|.-|..++|.-..
T Consensus 552 ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 552 LDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8885 8888888999999999999999999988877 7888889999999999999999999999999998886554
No 24
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=4.4e-25 Score=197.88 Aligned_cols=322 Identities=17% Similarity=0.144 Sum_probs=259.1
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+.++...+..|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+...|+..+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH---H------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDIS---L------------RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~---~------------~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 175 (687)
+++.+|.+++|..-|+.++..+|++.. + +......+...|+...|++....++++.|-+...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 999999999999999999998885532 2 2223344556788888888888888888888888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 255 (687)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (687)
.+.+|...|++..|+.-++.+-++..++.+ .++.++.+++..|+.+.++...+.++++ +|..-..+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vgd~~~sL~~iRECLKl----dpdHK~Cf-------- 260 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVGDAENSLKEIRECLKL----DPDHKLCF-------- 260 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhhhHHHHHHHHHHHHcc----CcchhhHH--------
Confidence 888888888888888888888887777765 6778888888888888888888888887 44332221
Q ss_pred HcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhhcHH
Q 005632 256 RLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKERA 331 (687)
Q Consensus 256 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~ 331 (687)
..|+++... .-...-+......++|.++++..+++++. .|..+ ...-.+..|+..-|++.
T Consensus 261 ---------~~YKklkKv------~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 261 ---------PFYKKLKKV------VKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred ---------HHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHH
Confidence 112221110 00111233445678899999999998877 56533 34455778899999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632 332 HAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (687)
Q Consensus 332 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (687)
+|+..+.+++..+|++..++...+..|+-...|+.|+..|+++.+.++.+.
T Consensus 325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999999999999999999999999988764
No 25
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=1.9e-24 Score=236.16 Aligned_cols=464 Identities=13% Similarity=0.056 Sum_probs=331.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCCHHHHHHHHHHHHH
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSP--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQ 114 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 114 (687)
-.....+...|++++|+..|+.+....| -+...+..+..++...++++.|...+..+.... ..+...+..+..+|.+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 3344556677888888888887765432 245667777777777888888877777766542 1246667777788888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+..+. +...+..+...+...|..+.+..++
T Consensus 171 ~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 171 CGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 8888888888877643 24556777777888888888888888887765432 3455666667777777777777777
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (687)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 273 (687)
..+.+..-.. +..++..+...|.+.|++++|...|+... +.+...|..+...|.+.|++++|+.+|+++...
T Consensus 248 ~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 248 CCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 7666553221 11256677788888888888887777652 335566777777788888888888888777655
Q ss_pred CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
....+...+..+...+...|++++|.+++..+.+...+.+..++..+...|.+.|++++|...|++..+ .+...|..
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~ 396 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNA 396 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHH
Confidence 433366677777777888888888888887777665566777777788888888888888888877643 24567777
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhh
Q 005632 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK 433 (687)
Q Consensus 354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 433 (687)
+...|.+.|+.++|+++|+++...... ++..++..+..++...|..++|.+.|..+.+..-
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~-----------Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g-------- 457 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVA-----------PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-------- 457 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--------
Confidence 778888888888888888776553221 1224677777777788888888777777664320
Q ss_pred hhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchh
Q 005632 434 VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES 513 (687)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (687)
T Consensus 458 -------------------------------------------------------------------------------- 457 (697)
T PLN03081 458 -------------------------------------------------------------------------------- 457 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchh
Q 005632 514 QQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF 593 (687)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 593 (687)
+..+... +.-++.+|.+.|+.++|.++++++. . ......+..++.++...|+.+.|.
T Consensus 458 ------------~~p~~~~---y~~li~~l~r~G~~~eA~~~~~~~~----~----~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 458 ------------IKPRAMH---YACMIELLGREGLLDEAYAMIRRAP----F----KPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred ------------CCCCccc---hHhHHHHHHhcCCHHHHHHHHHHCC----C----CCCHHHHHHHHHHHHHcCCcHHHH
Confidence 0011122 2345567999999999999987652 1 113345666677788899999999
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhC
Q 005632 594 DCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKY 641 (687)
Q Consensus 594 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 641 (687)
..++.++...|++...+.++..++.+.|+ +.+|.+.+..+..+.
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~----~~~A~~v~~~m~~~g 558 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGR----QAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCC----HHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999 899999999998863
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=8.9e-23 Score=198.15 Aligned_cols=521 Identities=15% Similarity=0.083 Sum_probs=402.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH---
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY--- 123 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--- 123 (687)
.++..+|..+++.+.+.+|.+|..|..-+.+-...|++..|.....+..+..|.+.+.|..-.++ ...+.|..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRL----hp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRL----HPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhc----CChHHHHHHHH
Confidence 35678899999999999999999999999999999999999998888888888877777654322 22233333
Q ss_pred ----------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 124 ----------------------------YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (687)
Q Consensus 124 ----------------------------~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 175 (687)
.++++++..|++...|- ......+.+.|...+.++.+..|.+.+.|..
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlA 415 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLA 415 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHH
Confidence 44444554554444332 2234566777888888888888888888876
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc------------------
Q 005632 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF------------------ 237 (687)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------ 237 (687)
++++ .-|+.|...+.++-+.-|.++. +|..-+.+-..+|+.+...+.+.+.+....
T Consensus 416 larL----etYenAkkvLNkaRe~iptd~~--IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 416 LARL----ETYENAKKVLNKAREIIPTDRE--IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHH----HHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 6654 4578888888888888888775 677777777788877777777766654321
Q ss_pred --------------------cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHH
Q 005632 238 --------------------SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS 297 (687)
Q Consensus 238 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 297 (687)
.........|..-+..+.+.+.++-|+.+|..+++.+|. ...+|...+..-...|..++
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHH
Confidence 123344456667777888888899999999999999886 88889999988889999999
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632 298 ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL 377 (687)
Q Consensus 298 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 377 (687)
-..++++++.. .|....+|...+..+...|+...|...+.++++.+|++.++|+.-..+.....+++.|..+|.++...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 99999999987 78899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCC
Q 005632 378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPT 457 (687)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (687)
.|.. ++++.-+.+...+|+.++|++.++..++..+.-+-..-...
T Consensus 648 sgTe-------------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG---------------------- 692 (913)
T KOG0495|consen 648 SGTE-------------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG---------------------- 692 (913)
T ss_pred CCcc-------------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh----------------------
Confidence 7755 58899999999999999999999999988754211111000
Q ss_pred CcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHH
Q 005632 458 DSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLII 537 (687)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (687)
.....+ +..|.....-.+|.... |....+.+
T Consensus 693 -----------------Qi~e~~--------~~ie~aR~aY~~G~k~c------------------------P~~ipLWl 723 (913)
T KOG0495|consen 693 -----------------QIEEQM--------ENIEMAREAYLQGTKKC------------------------PNSIPLWL 723 (913)
T ss_pred -----------------HHHHHH--------HHHHHHHHHHHhccccC------------------------CCCchHHH
Confidence 000001 01111122222343333 44556888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHH
Q 005632 538 DLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVL 617 (687)
Q Consensus 538 ~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 617 (687)
.++++.-..|+...|..+++++...+|. +..++.-..+.-+..|+.++|...+.++|+.-|++-.+|..-..+.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLE 797 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhc
Confidence 9999999999999999999999887776 5677777788888999999999999999999999999997665555
Q ss_pred HHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhh
Q 005632 618 SRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI 681 (687)
Q Consensus 618 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~ 681 (687)
-+.+. ......++.+..+++.+++..|..+....+++.|...|.||++.+|++.-+
T Consensus 798 ~~~~r--------kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 798 PRPQR--------KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred cCccc--------chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 44443 223345566678889999999999999999999999999999999998543
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=9.8e-25 Score=223.46 Aligned_cols=277 Identities=16% Similarity=0.088 Sum_probs=194.9
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHH
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALW 105 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~ 105 (687)
..+.....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...+
T Consensus 31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345566677778888899999999999999999999988899999999999999999999998888754322 2457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLF 180 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~ 180 (687)
..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 77888888888888888888888888887788888888888888888888888888887776543 2345667777
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHHcCC
Q 005632 181 LKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRLGN 259 (687)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 259 (687)
...|++++|+..++++++..|++.. ++..+|.++...|++++|+..++++... .+.. ..++..++.++...|+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVR--ASILLGDLALAQGDYAAAIEALERVEEQ----DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH----ChhhHHHHHHHHHHHHHHcCC
Confidence 7777777777777777777766543 5666777777777777777777777655 2222 2344455555555566
Q ss_pred HHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHH
Q 005632 260 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY 315 (687)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 315 (687)
+++|+..+++++...|. . .....++.++...|++++|+..+++++.. .|++..
T Consensus 265 ~~~A~~~l~~~~~~~p~-~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~ 317 (389)
T PRK11788 265 EAEGLEFLRRALEEYPG-A-DLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRG 317 (389)
T ss_pred HHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHH
Confidence 66666555555554442 2 22345555555555555555555555544 444443
No 28
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=1e-23 Score=236.10 Aligned_cols=491 Identities=12% Similarity=0.066 Sum_probs=348.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHc
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQK 115 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 115 (687)
+-.....|.+.|++++|..+|+++.. .+...|..+...|.+.|++++|+..|.++.... ..+...+..+...+...
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 33445667778888888888877642 245677778888888888888888888876543 12345566666777778
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAE-PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
|+.+.|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|.+.|++++|+..|+
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888887777643 3356678888888888888888888888754 2355678888888888888888888888
Q ss_pred HHHHh--CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 195 EYLKV--HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 195 ~~~~~--~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
++... .|+.. .+..+...+...|++++|.+.+..+.+. + ...+..++..+...|.+.|++++|..+|+++..
T Consensus 379 ~M~~~g~~Pd~~---t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 379 LMEQDNVSPDEI---TIASVLSACACLGDLDVGVKLHELAERK-G--LISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHhCCCCCce---eHHHHHHHHhccchHHHHHHHHHHHHHh-C--CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 77654 35544 4556667778888888888888887765 2 234556677788888888888888888888743
Q ss_pred hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC-CCHHHH
Q 005632 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDAR 351 (687)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 351 (687)
.+...|..+...|...|+.++|+.+|+++... .+.+...+..+-.++...|+.+.+.+.+..+++..- .+....
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 25567888888888888888888888888765 455666777777778888888888888888877532 344556
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHh
Q 005632 352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALR 431 (687)
Q Consensus 352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 431 (687)
..+...|.+.|+.++|...|+.. .+ + ..+|..+...|...|+.++|++.|.++.+..+.+
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~---~~-d------------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P---- 587 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH---EK-D------------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP---- 587 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc---CC-C------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Confidence 67889999999999999999886 22 2 2478899999999999999999999998664332
Q ss_pred hhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 005632 432 QKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDD 511 (687)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (687)
+...|..+..+.......+..... ++.. . +-+
T Consensus 588 -------------------------d~~T~~~ll~a~~~~g~v~ea~~~--f~~M-----------~----~~~------ 619 (857)
T PLN03077 588 -------------------------DEVTFISLLCACSRSGMVTQGLEY--FHSM-----------E----EKY------ 619 (857)
T ss_pred -------------------------CcccHHHHHHHHhhcChHHHHHHH--HHHH-----------H----HHh------
Confidence 111122111111111222111100 1100 0 000
Q ss_pred hhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcc
Q 005632 512 ESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNH 591 (687)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 591 (687)
....+...+..++.++.+.|+.+||.++++... +.| +..++..+..++...|+.+.
T Consensus 620 ----------------gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p-------d~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 620 ----------------SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP-------DPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred ----------------CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC-------CHHHHHHHHHHHHHcCChHH
Confidence 011123445556667999999999999988762 122 23455555566677789999
Q ss_pred hhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhh
Q 005632 592 GFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAK 640 (687)
Q Consensus 592 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 640 (687)
|....+.+++..|++...+.+++.+|...|+ +.++.+....+..+
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~----~~~a~~vr~~M~~~ 720 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGK----WDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCC----hHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999 78888888777775
No 29
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=5.4e-22 Score=218.14 Aligned_cols=375 Identities=13% Similarity=0.085 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSP--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
...++..-..+.+.|++++|+.+|+++...+. .+...+..+...+...|..++|...|+.... | +...|..+...
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHH
Confidence 34444444567789999999999999987653 2344455566778889999999999988765 4 56788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A 189 (687)
+...|++++|...++++.+... .+...+..+...|.+.|++++|.+.|+++.+... .+...|..+...|.+.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999988653 4677899999999999999999999999987653 3788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 269 (687)
+..|+.+....-. ++...|..+...+.+.|++++|.+.+.++... ...-..+...+..+...|.+.|++++|..+|+.
T Consensus 527 l~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 527 FGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999765321 22347899999999999999999999998764 111233456788888999999999999999999
Q ss_pred HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-CCCH
Q 005632 270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNI 348 (687)
Q Consensus 270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 348 (687)
+...+...+...|..+...|.+.|++++|+.+|.++.......+...|..+...+.+.|++++|.++++.+.+.. +.+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 988775558889999999999999999999999999877555678899999999999999999999999998864 3467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 349 DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 349 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..+..+...|.+.|++++|.++|+.+....... +...|..+...|.+.|++++|.+.+.++.+..
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-----------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-----------TVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 889999999999999999999999875432211 23588999999999999999999999997654
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.4e-24 Score=220.55 Aligned_cols=304 Identities=14% Similarity=0.121 Sum_probs=265.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHL 142 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l 142 (687)
.....+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345677779999999999999999999999999999999999999999999999999999998854332 2568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHc
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVIDLLVAILMEN 219 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~la~~~~~~ 219 (687)
|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+.. ...+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998876643 12456789999999
Q ss_pred chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHH
Q 005632 220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL 299 (687)
Q Consensus 220 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 299 (687)
|++++|+..++++++. .+....++..+|.++...|++++|+..++++....|......+..++.++...|++++|+
T Consensus 194 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998 666778899999999999999999999999998877655677889999999999999999
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHhcCCCCc
Q 005632 300 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE--EAKEEEAITLLSPPKD 376 (687)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~ 376 (687)
..++++... .|+.. .+..++.++...|++++|+..++++++..|++......+...+.. .|+.++++..+++.+.
T Consensus 270 ~~l~~~~~~-~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 270 EFLRRALEE-YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHh-CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999999877 66654 448899999999999999999999999999987665444443322 4588888888876553
No 31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=2.8e-23 Score=226.91 Aligned_cols=466 Identities=11% Similarity=0.042 Sum_probs=385.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLASF 145 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~ 145 (687)
..|..+...+...|++++|+..|..+....+ .+...+..+..++...++++.|...+..+.... ..+..++..+...
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3577777888899999999999999876542 356788889999999999999999999888743 2357788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A 225 (687)
|.+.|++++|.+.|+++.+ .+...|..+...|.+.|++++|+..|+++.+..+.. +...+..+...+...|..+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999998753 356788999999999999999999999998765432 223677888888999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 305 (687)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (687)
.+.+..+.+. + ...+..++..+...|.+.|++++|..+|+.+.. .+...|..+...|...|++++|+.+|+++
T Consensus 244 ~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 244 QQLHCCVLKT-G--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHh-C--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9988887765 2 234566778899999999999999999998742 37788999999999999999999999999
Q ss_pred hhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCC
Q 005632 306 ETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS 384 (687)
Q Consensus 306 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 384 (687)
.......+..++..+..++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.++|+++.+.+.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~----- 391 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----- 391 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe-----
Confidence 876556678899999999999999999999999999875 56778889999999999999999999998875322
Q ss_pred CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccc
Q 005632 385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGI 464 (687)
Q Consensus 385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (687)
.+|..+...|.+.|+.++|++.|.++.+....+
T Consensus 392 ----------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P------------------------------------- 424 (697)
T PLN03081 392 ----------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP------------------------------------- 424 (697)
T ss_pred ----------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------------------------
Confidence 378899999999999999999999987553211
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHH
Q 005632 465 RPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALA 544 (687)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (687)
+...+..+...+.
T Consensus 425 -------------------------------------------------------------------d~~T~~~ll~a~~ 437 (697)
T PLN03081 425 -------------------------------------------------------------------NHVTFLAVLSACR 437 (697)
T ss_pred -------------------------------------------------------------------CHHHHHHHHHHHh
Confidence 1223556677788
Q ss_pred HhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCc
Q 005632 545 SLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKIN 624 (687)
Q Consensus 545 ~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 624 (687)
..|..++|..+++.+....... .....+..++.++...|+.++|.+.++.+- ..| +..+|+.+...+...|+
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~----p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~-- 509 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIK----PRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKN-- 509 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCC----CCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCC--
Confidence 9999999999999987632221 122345566777888999999999987652 233 45679999999999999
Q ss_pred ccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhh
Q 005632 625 SKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKL 674 (687)
Q Consensus 625 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 674 (687)
+..+...++.+....|++...+..+.+.+...|++++|...+...-..
T Consensus 510 --~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 510 --LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred --cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 788888888888889999999999999999999999999999877553
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.94 E-value=9.8e-23 Score=205.95 Aligned_cols=572 Identities=15% Similarity=0.140 Sum_probs=391.4
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|.....++.+|.+|-.+|+.+++...+-.+-.++|++.+.|..++....++|++.+|.-+|.+|++.+|.+.......+.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKC 183 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~ 183 (687)
+|.+.|+...|...|.+++...|... +.....+..+...++-+.|++.++.++.... ...+.+..++.+++..
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 99999999999999999999998321 2344457778888888999999999998322 2345567889999999
Q ss_pred CChHHHHHHHHHHHHh--C----------------------CCC--CcHHH-HHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632 184 GQTARSIGILEEYLKV--H----------------------PSD--ADLSV-IDLLVAILMENNAYEKTLQHIEHAQIVR 236 (687)
Q Consensus 184 g~~~~A~~~~~~~~~~--~----------------------p~~--~~~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~ 236 (687)
..++.|.......... . |+. ....+ ...++.+..+.++..+++..+..--..
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~- 408 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV- 408 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-
Confidence 9999998887766551 0 111 11123 445556666666666666555433221
Q ss_pred ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHH
Q 005632 237 FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 316 (687)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 316 (687)
.....+..++.++.++...|++.+|+.++..+....+..+..+|+.+|.+|...|.+++|++.|++++.. .|++.++
T Consensus 409 --~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~ 485 (895)
T KOG2076|consen 409 --WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLDA 485 (895)
T ss_pred --ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhh
Confidence 1456678899999999999999999999999988877777889999999999999999999999999987 8999999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHhcCCCCcC-------Ccc
Q 005632 317 YLKLAECYLSLKERAHAIMFFYKALDRFEDN---------IDARLTLASLLLEEAKEEEAITLLSPPKDL-------DSL 380 (687)
Q Consensus 317 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~ 380 (687)
...++.++.++|++++|.+.+.....-++.+ .........++...|+.++=+......+.. .|.
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~ 565 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPR 565 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999876333222 234456777888888776644332211110 000
Q ss_pred ----------------cC----------------------------------CCCCCChhhhhHHHHHHHHHHHHHcCCc
Q 005632 381 ----------------DM----------------------------------NSDKSNPWWLNEKIIMKLCHIYRAKGMP 410 (687)
Q Consensus 381 ----------------~~----------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~ 410 (687)
.. ....-..|| +.+..+..++...+++
T Consensus 566 ~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf---el~~e~i~~L~k~~r~ 642 (895)
T KOG2076|consen 566 NKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF---ELFRELILSLAKLQRV 642 (895)
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH---HHHHHHHHHHHHHHhH
Confidence 00 001123345 5777788888899999
Q ss_pred hHHHHHHHHHHHHhhh-hHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 005632 411 EDFVDAIFPLVCESLC-VEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEAL 489 (687)
Q Consensus 411 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (687)
++|+.+...++....- .++...+......+ ...+...++ ...
T Consensus 643 qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l-------~~s~~~~d~--------------~~a---------------- 685 (895)
T KOG2076|consen 643 QEALSVVFTALEAYIFFQDSEIRKELQFLGL-------KASLYARDP--------------GDA---------------- 685 (895)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHH-------HHHHhcCCH--------------HHH----------------
Confidence 9998877777644321 11111111000000 000000000 000
Q ss_pred HHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcc---hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Q 005632 490 KEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNE---ENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNI 566 (687)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~ 566 (687)
..+++.-+..+. +-.++ ..|.+.+++ ....++-.-=...+..++...+.
T Consensus 686 -----~~~lR~~i~~~~-------------------~~~~~~q~~l~n~~~s~---~~~~~q~v~~~R~~~~~~~~~~~- 737 (895)
T KOG2076|consen 686 -----FSYLRSVITQFQ-------------------FYLDVYQLNLWNLDFSY---FSKYGQRVCYLRLIMRLLVKNKD- 737 (895)
T ss_pred -----HHHHHHHHHHHh-------------------hhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCcc-
Confidence 000000000000 00011 112222222 22333322222333334332222
Q ss_pred CchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc--CC----cccccchHHHHHHHHhh
Q 005632 567 LPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG--KI----NSKHSKHSKFIRYLRAK 640 (687)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~----~~~~~~a~~~~~~~~~~ 640 (687)
....+..+.+...+.++.+.-|+..+-.+...+|++|-.-.+++..+.... .- .......-.|+.+-...
T Consensus 738 ----~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l 813 (895)
T KOG2076|consen 738 ----DTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL 813 (895)
T ss_pred ----CCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 124556667788888899999999999999999999998888776644322 10 00011334555555443
Q ss_pred CC--CCCCccceeccccccccchHHHHHHHHHHHhhCCCC
Q 005632 641 YK--DCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPEN 678 (687)
Q Consensus 641 ~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~ 678 (687)
-- +...+...+|..++.-|=...|+.+|+++|.+.|.+
T Consensus 814 R~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 814 RRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD 853 (895)
T ss_pred hccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence 22 356778899999999999999999999999998864
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.1e-25 Score=215.21 Aligned_cols=306 Identities=15% Similarity=0.093 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHHc--CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSAL--GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 69 ~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
..+..+|..|... -+..+|+..|.+.-...++..+++..+|..|+.+++|++|..+|+.+-...|-..+..-....++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 3556666666544 45679999999977778888899999999999999999999999999999997776666666777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~ 226 (687)
..+.+.-+---..+..+..+|+.|+.|..+|.+|.-+++.+.|++.|++++.++|...- +|..+|.-+....+++.|.
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHH
Confidence 77666555555667788999999999999999999999999999999999999998875 7889999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
.+|+.++.. ++....+|+.+|.+|.++++++.|.-.|+++++.+|. +..+...+|.++.+.|+.++|+.+|+++.
T Consensus 476 ~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (687)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (687)
.. +|.++-..+..|.++..++++++|+..++++.++.|+...++..+|.+|.+.|+.+.|+..|.-|.+.+|...
T Consensus 551 ~l-d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 551 HL-DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hc-CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 88 8999999999999999999999999999999999999999999999999999999999999999999999764
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=195.42 Aligned_cols=463 Identities=16% Similarity=0.131 Sum_probs=343.0
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-----HH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVR--LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SA 103 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 103 (687)
+-....++.+|..|.....+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+++|+.++..-|.- ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 44566788999999999999999999998875 467777788899999999999999999999999887752 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------CCH-H
Q 005632 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--P---------DNV-D 171 (687)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p---------~~~-~ 171 (687)
.+.++|..+.+.|+|+.|+..|+.+.+..|+.. +-+++..+++..|+-++-.+.|.+++.+- | ++| +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 577889999999999999999999999998655 45678889999999999999999998751 1 111 1
Q ss_pred HHHHHH---HHH--HHcCChHHHHHHHHHHHHh-----CCCCCc---H---------------HHHHHHHHHHHHcchHH
Q 005632 172 ATKTGA---QLF--LKCGQTARSIGILEEYLKV-----HPSDAD---L---------------SVIDLLVAILMENNAYE 223 (687)
Q Consensus 172 ~~~~la---~~~--~~~g~~~~A~~~~~~~~~~-----~p~~~~---~---------------~~~~~la~~~~~~~~~~ 223 (687)
.+.+-+ ..+ ....+-..|.+....+.++ .|+... | ..-...+..++++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 111111 111 1122223334433333332 222110 0 11224456678888999
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHH
Q 005632 224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301 (687)
Q Consensus 224 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 301 (687)
.|++.++-.-+. ++.....+..++..+++.+ .++..|..+...++..+.- ++.++.+.|.+.+..|++++|.+.
T Consensus 437 ~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 437 GAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred HHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHH
Confidence 988887665443 1222333444555555543 4677888888888776654 777888888888899999999999
Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632 302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (687)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (687)
|++++.. +.....+++++|..+..+|+.++|+++|-+...+--++.+++..++.+|..+.+..+|++++.++...-|.+
T Consensus 513 ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 513 YKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 9988866 667788889999999999999999999998888888889999999999999999999999999998888887
Q ss_pred CCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCccc
Q 005632 382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSIL 461 (687)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (687)
+ .++..||.+|-+.|+..+|..++-.-.+-
T Consensus 592 p------------~ilskl~dlydqegdksqafq~~ydsyry-------------------------------------- 621 (840)
T KOG2003|consen 592 P------------AILSKLADLYDQEGDKSQAFQCHYDSYRY-------------------------------------- 621 (840)
T ss_pred H------------HHHHHHHHHhhcccchhhhhhhhhhcccc--------------------------------------
Confidence 7 48889999999998887775543332211
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHH
Q 005632 462 CGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCK 541 (687)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 541 (687)
+|-+.+.+--++-
T Consensus 622 -------------------------------------------------------------------fp~nie~iewl~a 634 (840)
T KOG2003|consen 622 -------------------------------------------------------------------FPCNIETIEWLAA 634 (840)
T ss_pred -------------------------------------------------------------------cCcchHHHHHHHH
Confidence 2233334444555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 005632 542 ALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG 621 (687)
Q Consensus 542 ~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 621 (687)
-|...+-.+.|+.+++++--+.|. ...-.+..+.|....|++++|+..+++...+.|.+.+.+..+.++....|
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPN------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCcc------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 688888899999999999766655 23333444566667799999999999999999999999998888876666
Q ss_pred C
Q 005632 622 K 622 (687)
Q Consensus 622 ~ 622 (687)
-
T Consensus 709 l 709 (840)
T KOG2003|consen 709 L 709 (840)
T ss_pred c
Confidence 4
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-22 Score=190.24 Aligned_cols=378 Identities=14% Similarity=0.079 Sum_probs=302.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC--CCHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWKQLLT 110 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 110 (687)
+.--++-.|.++-..|..+.|+..|..++...|-+..+|..|+.+... ++........-| .+.-.-..++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 445556668888888888888888888888788887888777766432 222233332223 22233345677
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 189 (687)
++....+.++++.-++..... .|.+.-.-...|.+...+.++++|+..|+...+.+|-..+-.-....+++-.++-.+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 777777888888888888887 7888888888899999999999999999999999887666666666666655554444
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 269 (687)
.-+...+..++.-.++ ....+|+.|...++.++|+.+|++++++ +|....+|..+|.-|..+.+...|+..|++
T Consensus 316 s~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 4444555566555444 5678899999999999999999999999 999999999999999999999999999999
Q ss_pred HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632 270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (687)
Q Consensus 270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (687)
+++.+|. +..+|+.+|+.|.-.+.+.=|+-+|+++... .|.++..|..+|.||.+.++.++|+++|++++.....+..
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 9999996 9999999999999999999999999999987 8999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHH
Q 005632 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEA 429 (687)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 429 (687)
++..||.++.+.++.++|..+|++.++........+ + .-..+...|+.-+.+.+++++|..+....+.-..+.+-
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~-~----~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID-D----ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-h----HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 999999999999999999999998877431111100 0 01246667999999999999999888888766544333
Q ss_pred H
Q 005632 430 L 430 (687)
Q Consensus 430 ~ 430 (687)
+
T Consensus 543 a 543 (559)
T KOG1155|consen 543 A 543 (559)
T ss_pred H
Confidence 3
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-22 Score=188.67 Aligned_cols=331 Identities=17% Similarity=0.149 Sum_probs=280.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLAS 144 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~ 144 (687)
++-.++..|.++...|....|+..|..++...|-+..+|..|+.+... ++........-| .+.-.-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 455678888888888888889988888888888888888888776532 223333333233 33344556777
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHH
Q 005632 145 FYVEIGDYEKAAESYEQIQKL-FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~ 223 (687)
++....+.++++.-++..... .|.+.-.-...|.+...+.++++|+..|+.+.+.+|-..+ -.....++++-..+-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHHhhhH
Confidence 888888899999999998888 8888888899999999999999999999999999887665 3445566666555544
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632 224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 303 (687)
Q Consensus 224 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (687)
+---.-..+..+ +...++....+|..|...++.++|+.+|++++..+|. ...+|..+|.-|.+.++...|++.|+
T Consensus 314 kLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 444444555666 6777888888999999999999999999999999996 99999999999999999999999999
Q ss_pred HhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCC
Q 005632 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 383 (687)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 383 (687)
++++. .|.+-.+|+.+|+.|.-++.+.=|+-+|+++++..|+++..|..||.||.+.++.++|+++|.+++.....+.
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~- 466 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG- 466 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-
Confidence 99998 8999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 384 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 384 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
.++..+|.+|.+.++.++|...|.+.++..
T Consensus 467 -----------~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 467 -----------SALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred -----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 399999999999999999999999998765
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=5.4e-21 Score=210.36 Aligned_cols=369 Identities=14% Similarity=0.087 Sum_probs=314.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCCHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-KDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 119 (687)
...+...|..++|..+++.+.. | +...|..+-..+...|++++|...|.++.+... .+...|..+...|.+.|+.+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3456778999999999987754 4 567888888999999999999999999987653 35788999999999999999
Q ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632 120 QAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLF-PDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 120 ~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
+|...|+++..... .+..+|..+...|.+.|++++|++.|.++.... ..+...+..+...+.+.|++++|.+++.++.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988653 378899999999999999999999999997653 2357789999999999999999999999997
Q ss_pred Hh-CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch
Q 005632 198 KV-HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI 276 (687)
Q Consensus 198 ~~-~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 276 (687)
.. .+-.++...+..+...|.+.|++++|.+.|+.+.+. + .+.+...+..+...|.+.|++++|..+|.++....-.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 63 222233347889999999999999999999999876 1 2455678889999999999999999999999876544
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 005632 277 DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR--FEDNIDARLTL 354 (687)
Q Consensus 277 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 354 (687)
.+...+..+...+...|++++|.++++.+.+...+.+...+..+...|.+.|++++|.+.|+++.+. .| +...|..+
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~L 725 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNAL 725 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 4778899999999999999999999999998766778899999999999999999999999998764 44 57789999
Q ss_pred HHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632 355 ASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (687)
Q Consensus 355 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 427 (687)
...|.+.|++++|.++++++....... +..++..+...+.+.|++++|.+.+..+.+..+..
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~P-----------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCP-----------NTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999876543211 23588889999999999999999999998876543
No 38
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-23 Score=197.17 Aligned_cols=368 Identities=20% Similarity=0.199 Sum_probs=296.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
..-.+|+..+..|+|+.|+.+|.+++.++|.+...|.+...+|...|+|++|++.-.+.++++|+.+..|..+|..+.-.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------------C-------HHHHHHHHHHHHHhCCCC--
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-----------------D-------YEKAAESYEQIQKLFPDN-- 169 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-----------------~-------~~~A~~~~~~~~~~~p~~-- 169 (687)
|+|++|+..|.+.++.+|++......++.++.... + .+.+.....+.+..+|.+
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999999999999998888888773220 0 001111111111111100
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHcCChHHH
Q 005632 170 ------------------------------------------------------------VDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 170 ------------------------------------------------------------~~~~~~la~~~~~~g~~~~A 189 (687)
......+|...+...+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 02345778888899999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC---CCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG---KELPLKLKVKAGICYLRLGNMEKAEIL 266 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 266 (687)
++.|..++.++ .+.. -+.+.+.+|+..|.+.+.+.....+++..... ...-......+|..+...++++.|+.+
T Consensus 244 ~q~y~~a~el~-~~it--~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA-TDIT--YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh-hhhH--HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 99999999999 5554 57789999999999999999998888761100 111123344567788889999999999
Q ss_pred HHHHhhhCch-------------------------hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632 267 FADLQWKNAI-------------------------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 321 (687)
Q Consensus 267 ~~~~~~~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la 321 (687)
|.+++..... ........-|..++..|+|..|+..|.+++.. .|+++.+|.++|
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCchhHHHHHHH
Confidence 9997654321 01122345588899999999999999999988 899999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHH
Q 005632 322 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC 401 (687)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la 401 (687)
.||..+|.+..|+...+.+++++|+...+++.-|.++..+.+|++|.+.|+++++.+|.+. ++...+.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~------------e~~~~~~ 467 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA------------EAIDGYR 467 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH------------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999765 4666777
Q ss_pred HHHHHcCCchHHHHHHHH
Q 005632 402 HIYRAKGMPEDFVDAIFP 419 (687)
Q Consensus 402 ~~~~~~g~~~~A~~~~~~ 419 (687)
+++..+.....-.+..+.
T Consensus 468 rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 468 RCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHhhcCCCHHHHHHh
Confidence 777655333334444444
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.9e-22 Score=189.67 Aligned_cols=461 Identities=15% Similarity=0.080 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
......-+-+..+.+|.-|+-+-+++..+. .+|.--+.+|.+++-.|++..|......- .+...+....+..+.++..
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHH
Confidence 334444456777889999999999998887 78888889999999999999988776654 5556677788889999999
Q ss_pred cCCHHHHHHHHHHH------HHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 115 KGDTAQAMYYIRQA------IRAEPKD-------------------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 115 ~g~~~~A~~~~~~a------~~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
..++++|...+... +..+|.+ ....+..|.+|....+.++|...|.+++..++.+
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c 174 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKC 174 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhh
Confidence 99999999888733 1111211 1235667888999999999999999999998887
Q ss_pred HHHHHHHHHHHHHcC--------C------hHHHHHHHHHHHHh-------------CCC------CCcHHHHHHHHHHH
Q 005632 170 VDATKTGAQLFLKCG--------Q------TARSIGILEEYLKV-------------HPS------DADLSVIDLLVAIL 216 (687)
Q Consensus 170 ~~~~~~la~~~~~~g--------~------~~~A~~~~~~~~~~-------------~p~------~~~~~~~~~la~~~ 216 (687)
.++...+-....-.. . ..+=.+.++...++ .|+ .....+....+..+
T Consensus 175 ~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~ 254 (611)
T KOG1173|consen 175 FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRL 254 (611)
T ss_pred HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHH
Confidence 766554432221111 0 01111111111111 111 01123566788899
Q ss_pred HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChH
Q 005632 217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN 296 (687)
Q Consensus 217 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 296 (687)
+..++|.+..+..+..++. +|.....+....-++...|+..+-..+-.+++...|. .+..|+.+|..|...|++.
T Consensus 255 y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcH
Confidence 9999999999999999998 5555554444444889999988888888888888885 8999999999999999999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
+|..+|.++... +|....+|...|..+...|..++|+..|..|-++.|+.....+.+|.-|..+++++-|.++|.++..
T Consensus 330 eARry~SKat~l-D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTL-DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhc-CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999987 8999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCC
Q 005632 377 LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLP 456 (687)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (687)
+.|.++. ++..+|.+.+..+.+.+|..+|+..+....+.
T Consensus 409 i~P~Dpl------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~----------------------------- 447 (611)
T KOG1173|consen 409 IAPSDPL------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSV----------------------------- 447 (611)
T ss_pred cCCCcch------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhc-----------------------------
Confidence 9999986 89999999999999999999999887332110
Q ss_pred CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHH
Q 005632 457 TDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLI 536 (687)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (687)
....+-|....
T Consensus 448 ---------------------------------------------------------------------~~e~~~w~p~~ 458 (611)
T KOG1173|consen 448 ---------------------------------------------------------------------LNEKIFWEPTL 458 (611)
T ss_pred ---------------------------------------------------------------------cccccchhHHH
Confidence 01122466688
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632 537 IDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV 616 (687)
Q Consensus 537 ~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 616 (687)
..++.++-+.+++++|+..+++++...+. ........+.++...|+.+.|+.++.+.|...|++..+-.++...
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSPK------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCCC------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 89999999999999999999999998877 456677778889999999999999999999999999998888877
Q ss_pred HHH
Q 005632 617 LSR 619 (687)
Q Consensus 617 ~~~ 619 (687)
+..
T Consensus 533 ie~ 535 (611)
T KOG1173|consen 533 IED 535 (611)
T ss_pred HHh
Confidence 655
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=195.62 Aligned_cols=496 Identities=14% Similarity=0.142 Sum_probs=330.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------CCC------chHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------------SPN------LPETYNTLGLAHSALGNHKSAFDFYVI 93 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 93 (687)
..+..++....+.-..|++.+|++..+.+=.. -|. ...++++++.-|.....+.+|+..|+-
T Consensus 147 ~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyei 226 (840)
T KOG2003|consen 147 KEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEI 226 (840)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhh
Confidence 35667777788888899999998877654211 122 234789999999999999999999998
Q ss_pred Hhcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 94 AAHL--SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 94 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
.++- .|+....-.++|.++++..+|.+|+.+|+-++..-|.- ...+.++|..+.+.|+|+.|+..|+.+++..
T Consensus 227 ivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~ 306 (840)
T KOG2003|consen 227 IVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA 306 (840)
T ss_pred hhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC
Confidence 8753 58877888899999999999999999999999987753 4567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C---------CCCcHHHHHH-HHH-H--HHHcchHHHHHHHHHH
Q 005632 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH--P---------SDADLSVIDL-LVA-I--LMENNAYEKTLQHIEH 231 (687)
Q Consensus 167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p---------~~~~~~~~~~-la~-~--~~~~~~~~~A~~~~~~ 231 (687)
|+.. +-++|..+++..|+-++-.+.|.+++.+. | +++....+.. +-. . .+...+-..|.+.+-.
T Consensus 307 pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~t 385 (840)
T KOG2003|consen 307 PNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIIT 385 (840)
T ss_pred ccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 9654 44578889999999999999999998752 1 1122111111 101 1 1112223334444444
Q ss_pred HHHHhcc---------------------CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632 232 AQIVRFS---------------------GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (687)
Q Consensus 232 ~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (687)
+.++..+ ..+....+-...+.-+++.|+++.|+++++-.-..+......+-.++..+++
T Consensus 386 a~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~f 465 (840)
T KOG2003|consen 386 AAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRF 465 (840)
T ss_pred HHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHH
Confidence 4443211 0111222333444556666777777666665544443333334444444444
Q ss_pred hcC--ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 291 SLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368 (687)
Q Consensus 291 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 368 (687)
.+| ++..|..+...++.. +..++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+
T Consensus 466 lqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeal 544 (840)
T KOG2003|consen 466 LQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEAL 544 (840)
T ss_pred HhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHH
Confidence 432 566666666666654 55566666666666666777777777777777666666666777777777777777777
Q ss_pred HhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhH
Q 005632 369 TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQR 448 (687)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (687)
.+|-+.-.+-.+ +.++++.++.+|..+.+..+|++++.++.+.
T Consensus 545 d~f~klh~il~n------------n~evl~qianiye~led~aqaie~~~q~~sl------------------------- 587 (840)
T KOG2003|consen 545 DCFLKLHAILLN------------NAEVLVQIANIYELLEDPAQAIELLMQANSL------------------------- 587 (840)
T ss_pred HHHHHHHHHHHh------------hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-------------------------
Confidence 666554333222 2246666777776666666666665554322
Q ss_pred hhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccC
Q 005632 449 TKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLK 528 (687)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (687)
T Consensus 588 -------------------------------------------------------------------------------- 587 (840)
T KOG2003|consen 588 -------------------------------------------------------------------------------- 587 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCch
Q 005632 529 NEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLS 608 (687)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 608 (687)
-|..+..+..++.+|-+.|+-..|.+..-..-+..|.+ -+.+.+ ++..++...=+++|+.++.+.--..|+-..
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-----ie~iew-l~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-----IETIEW-LAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-----hHHHHH-HHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 23344566678888888888888887766665555442 223333 344455566678889999888888887766
Q ss_pred hhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccc
Q 005632 609 AWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFT 656 (687)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~ 656 (687)
.-.+.+.++.++|+ +.++-........++|++..++-.+..++.
T Consensus 662 wqlmiasc~rrsgn----yqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 662 WQLMIASCFRRSGN----YQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHHhccc----HHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 66666778888888 888888888888889988877655554443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=3e-20 Score=180.79 Aligned_cols=463 Identities=14% Similarity=0.089 Sum_probs=354.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 126 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 126 (687)
..+.+.|+.++.++++.-|.+.+.|..++.. .-|+.|...+.++-+.-|.++.+|..-+.+-...|+.+.-.....
T Consensus 389 lE~~~darilL~rAveccp~s~dLwlAlarL----etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQSMDLWLALARL----ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ccChHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455668888888888888888877766644 567888888888888888888888888888888887776666666
Q ss_pred HHHHhC------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 127 QAIRAE------------------------------------------PKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 127 ~a~~~~------------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
+.+..- .+....|..-+..+...+-++-|...|..+++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 554310 11223466677777888888999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchH
Q 005632 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244 (687)
Q Consensus 165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 244 (687)
.+|....+|...+..--.-|..++-..++++++...|.... .|...+..+...|+...|...+.++.+. +|.+.
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~--lwlM~ake~w~agdv~~ar~il~~af~~----~pnse 618 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI--LWLMYAKEKWKAGDVPAARVILDQAFEA----NPNSE 618 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHhcCCcHHHHHHHHHHHHh----CCCcH
Confidence 99999999999888888889999999999999999998775 6888888899999999999999999998 88888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 005632 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECY 324 (687)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 324 (687)
.+|+....+.....+++.|..+|.++....+ ...+|+.-+.+...+++.++|+.+++++++. .|+...+|..+|+++
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 9999999999999999999999999877655 7788888899999999999999999999987 899999999999999
Q ss_pred HHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 005632 325 LSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY 404 (687)
Q Consensus 325 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 404 (687)
.++++.+.|...|...++..|+.+..|..|+.+-.+.|..-.|..+++++.-.+|.+.. .+....++-
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------------lwle~Ir~E 763 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------------LWLESIRME 763 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------------hHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998874 778888888
Q ss_pred HHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHH
Q 005632 405 RAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQ 484 (687)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (687)
.+.|+.++|...+.+.+++.+...-.... .-++...+.- ..+..+
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg~LWaE---------------aI~le~~~~r--------------kTks~D------ 808 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSGLLWAE---------------AIWLEPRPQR--------------KTKSID------ 808 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccchhHHH---------------HHHhccCccc--------------chHHHH------
Confidence 99999999998888888887543111110 0011100000 000000
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 005632 485 KKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAY 564 (687)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~ 564 (687)
.+-.-..+...++..+.++....+++.|..++.+++..++
T Consensus 809 ----------------------------------------ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 809 ----------------------------------------ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred ----------------------------------------HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 0111222344666777777777778888888777777665
Q ss_pred ccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHH
Q 005632 565 NILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYK 615 (687)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 615 (687)
+ .-+.+.......+..|.-+.-.+.+.......|..-..|.....
T Consensus 849 d------~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 849 D------NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred c------cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 5 23444444444555565556666666666666666555554443
No 42
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.92 E-value=8.1e-21 Score=185.20 Aligned_cols=171 Identities=21% Similarity=0.319 Sum_probs=164.6
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
+||.-..+|.++.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|..+...++..++.+...|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 189 (687)
.++....+|++|+.+|+.|+...|+|...+.-++.+..++++++.....-.+.++..|..-..|+..+..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 005632 190 IGILEEYLKVH 200 (687)
Q Consensus 190 ~~~~~~~~~~~ 200 (687)
...++...+..
T Consensus 163 ~~il~ef~~t~ 173 (700)
T KOG1156|consen 163 LEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhh
Confidence 99988877664
No 43
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.91 E-value=2.5e-21 Score=196.70 Aligned_cols=589 Identities=11% Similarity=-0.004 Sum_probs=374.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 126 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 126 (687)
..+...|...|-+++.++|..+.++..+|.+|....+...|..+|++|.++++.+..++-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 127 QAIRAEPKD--ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 127 ~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
.+-+..|.. ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 666665543 345667999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc------
Q 005632 205 DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS---GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA------ 275 (687)
Q Consensus 205 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------ 275 (687)
- ..+..+.+....|+|.+|+..+...+..... ........+...+..+...|-...|...+++.++...
T Consensus 631 y--~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 631 Y--GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred H--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 4 6778889999999999999999988876321 1122334555555555556666666666665433211
Q ss_pred -hhhHHHHHHHHHHHH-------------------h----cCCh------HHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 005632 276 -IDHADLITEVADTLM-------------------S----LGHS------NSALKYYHFLETNAGTDNGYLYLKLAECYL 325 (687)
Q Consensus 276 -~~~~~~~~~la~~~~-------------------~----~g~~------~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 325 (687)
.++.-.|..++.++. . .+.. --+.+++-..+.. ...+..|+++|..|.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHH
Confidence 112222322222221 0 1110 1122222222221 223567777777766
Q ss_pred H--------hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHH
Q 005632 326 S--------LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKII 397 (687)
Q Consensus 326 ~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 397 (687)
. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.....|.... +|
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~------------~W 853 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC------------QW 853 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh------------he
Confidence 5 2233467888888888888888888888777 5557788888888888877777664 66
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccC----CCCCcccccccCCCchhHH
Q 005632 398 MKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNN----LPTDSILCGIRPAAPKSEL 473 (687)
Q Consensus 398 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 473 (687)
.++|.++.+..+++.|...|..+..-.|..-...- ++.......+....+..+..- .....-..++.+.
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl-G~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw------ 926 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL-GEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW------ 926 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhhHHHH-HHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH------
Confidence 78888888888888776666665433222111110 001111111111111111111 0000000001100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHH
Q 005632 474 LVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEAS 553 (687)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~ 553 (687)
.+.....++++..+. .... .. .-+.+...+...+...|+..-++...+.++-.++.+.+|.
T Consensus 927 --~c~te~h~~Ng~~e~--~I~t----~~-----------ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ 987 (1238)
T KOG1127|consen 927 --LCATEIHLQNGNIEE--SINT----AR-----------KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAAL 987 (1238)
T ss_pred --HHHHHHHHhccchHH--HHHH----hh-----------hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHH
Confidence 111111122211100 0000 00 0000001111124567777777777788888899999999
Q ss_pred HHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHH-hhCCCCchhhHHHHHHHHHhcCCcccccchHH
Q 005632 554 EIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYIL-QLHPYSLSAWNCYYKVLSRMGKINSKHSKHSK 632 (687)
Q Consensus 554 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 632 (687)
....+.+.+-...+...+...+.-..+++.+..|+++.|........ +.+.+....- + ...-.++ +.+...
T Consensus 988 ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~--l--~lFfknd----f~~sl~ 1059 (1238)
T KOG1127|consen 988 ELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD--L--TLFFKND----FFSSLE 1059 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh--H--HHHHHhH----HHHHHH
Confidence 88877765544444444444566677888889999987755442221 1111111000 0 0122444 567788
Q ss_pred HHHHHHhhCCCCCCc---cceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632 633 FIRYLRAKYKDCVPP---IIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL 686 (687)
Q Consensus 633 ~~~~~~~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~ 686 (687)
++++++.-...+... +.-.+.+-..++..+.|......++.+.|-+....|+|+
T Consensus 1060 ~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1060 FFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLP 1116 (1238)
T ss_pred HHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHH
Confidence 888888764443332 223344444577888899999999999998877776653
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-21 Score=186.11 Aligned_cols=295 Identities=16% Similarity=0.169 Sum_probs=255.5
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 108 (687)
.+..+..-+..+|..++..++|.+..++++..++.+|-++.++-...-++...|+..+-...-.+.++..|+.+..|+..
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34456666778899999999999999999999999998888776555589999998888888888889999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
|..|...|++.+|..+|.++..++|....+|...|..+...|..++|+.+|..+-++.|......+.+|.-|...++++-
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888889999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA 268 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 268 (687)
|...|.+++.+.|.++- ++..+|.+.+..+.|.+|..+|+.++...+
T Consensus 399 Ae~Ff~~A~ai~P~Dpl--v~~Elgvvay~~~~y~~A~~~f~~~l~~ik------------------------------- 445 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPL--VLHELGVVAYTYEEYPEALKYFQKALEVIK------------------------------- 445 (611)
T ss_pred HHHHHHHHHhcCCCcch--hhhhhhheeehHhhhHHHHHHHHHHHHHhh-------------------------------
Confidence 99999999999999886 788899999999999999999998874411
Q ss_pred HHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632 269 DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 269 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (687)
.+....+ .....+.++|.++.+.+.+++|+..+++++.. .|.++.++..+|.+|..+|+++.|+++|.+++-+.|++.
T Consensus 446 ~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 446 SVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 1111111 24556889999999999999999999999987 899999999999999999999999999999999999997
Q ss_pred HHHHHHHHHH
Q 005632 349 DARLTLASLL 358 (687)
Q Consensus 349 ~~~~~la~~~ 358 (687)
.+...|+.+.
T Consensus 524 ~~~~lL~~ai 533 (611)
T KOG1173|consen 524 FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH
Confidence 7766666443
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-20 Score=181.02 Aligned_cols=340 Identities=16% Similarity=0.130 Sum_probs=279.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
....|...+..|+++.|+.+|..++.++|.+...+.+...+|..+|+|++|+.--.+.++++|+-+..|..+|..+..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------hHHHHHHHHHHHHhCCC----
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ------------------------TARSIGILEEYLKVHPS---- 202 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~~~~~p~---- 202 (687)
+|++|+..|.+.++.+|++......++.++...-. .+.+.......+..+|.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999999999999888888877622200 00111111111111100
Q ss_pred ----------------------------------CC------------c----------HHHHHHHHHHHHHcchHHHHH
Q 005632 203 ----------------------------------DA------------D----------LSVIDLLVAILMENNAYEKTL 226 (687)
Q Consensus 203 ----------------------------------~~------------~----------~~~~~~la~~~~~~~~~~~A~ 226 (687)
.+ + ..-...+|.......++..|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00 0 023456889999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh------hHHHHHHHHHHHHhcCChHHHHH
Q 005632 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID------HADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
+.+..++.+ . .....+.+.+-+|+..|.+.+++....++++..... -......+|..+...++++.|+.
T Consensus 245 q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 245 QHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999999 6 777778889999999999999999988877654421 12234456778888899999999
Q ss_pred HHHHhhhcc-------------------------CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632 301 YYHFLETNA-------------------------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (687)
Q Consensus 301 ~~~~~~~~~-------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (687)
+|++++... .|....--...|..++..|+|..|+..|.+++..+|+++..+.+.+
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 999876431 2223333455688999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (687)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 427 (687)
.+|.++|.+..|+...+.+++.+|... ..+..-|.++..+.+|++|++.|+..++..+..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~------------kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFI------------KAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999999999999999999999988754 588999999999999999999999998776554
No 46
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=6.9e-19 Score=175.37 Aligned_cols=548 Identities=17% Similarity=0.101 Sum_probs=383.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHH-----------HHHHHHHcCChHHHHHHHHHHhccC-
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNT-----------LGLAHSALGNHKSAFDFYVIAAHLS- 98 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~-----------l~~~~~~~g~~~~A~~~~~~al~~~- 98 (687)
..+..+-+-|++.+|.+-+...++. .|.....-.. +...+...+...+++..+.+++...
T Consensus 179 lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w 258 (799)
T KOG4162|consen 179 LKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSW 258 (799)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhccc
Confidence 3456666677999999999888764 2221111111 2334445677788888888877543
Q ss_pred CCCH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCC
Q 005632 99 PKDS----------------------ALWKQLLTFAVQKGDTAQAMYYIRQAIR-----AEPKDISLRIHLASFYVEIGD 151 (687)
Q Consensus 99 p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~la~~~~~~g~ 151 (687)
+.++ ........++.-..+.++++-..-..+. ...+++.++-.+...+...|+
T Consensus 259 ~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~ 338 (799)
T KOG4162|consen 259 SLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQ 338 (799)
T ss_pred ccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 1111 1111223333444455555443332222 123567788889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCCcHHHHHHHH-HHHHHcchHHHHHHH
Q 005632 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH--PSDADLSVIDLLV-AILMENNAYEKTLQH 228 (687)
Q Consensus 152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~la-~~~~~~~~~~~A~~~ 228 (687)
+..+.+.|++++...-...+.|+.++..+...|.-..|+.+++..+... |+++. .+...+ .+..+.+.+++++.+
T Consensus 339 f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s--~~Lmasklc~e~l~~~eegldY 416 (799)
T KOG4162|consen 339 FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS--VLLMASKLCIERLKLVEEGLDY 416 (799)
T ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch--HHHHHHHHHHhchhhhhhHHHH
Confidence 9999999999998888888999999999999999999999999999888 66554 344444 445567999999999
Q ss_pred HHHHHHHhc-cCCCchHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChH
Q 005632 229 IEHAQIVRF-SGKELPLKLKVKAGICYLRL-----------GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN 296 (687)
Q Consensus 229 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 296 (687)
..+++.... ......+..+..+|.+|..+ ....++++.++++++.+|. ++.+.+.++.-|...++.+
T Consensus 417 A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 417 AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHH
Confidence 999998532 23445567778888887643 2346788889999888885 8899999999999999999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
.|.+...+++.....+++..|..++.++...+++.+|+...+.+++-.|+|.........+-...|+.++|+..+...+.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999998866778999999999999999999999999999999999877777777777778999988887765554
Q ss_pred CCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCC
Q 005632 377 LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLP 456 (687)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (687)
........... .........-+.+....++..+|++....+....-
T Consensus 576 ~we~~~~~q~~---~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a------------------------------- 621 (799)
T KOG4162|consen 576 LWEAEYGVQQT---LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA------------------------------- 621 (799)
T ss_pred HHHhhhhHhhh---hhhhhhhhhhcccccCcccccccchhhHHHHHHHH-------------------------------
Confidence 32211100000 00000011111111111222222222222221110
Q ss_pred CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcch--h--
Q 005632 457 TDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEE--N-- 532 (687)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 532 (687)
. ++.....+ . .-+...+...|+ |
T Consensus 622 -----------------------~-------------------~~~~~~se-----~------~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 622 -----------------------S-------------------QLKSAGSE-----L------KLPSSTVLPGPDSLWYL 648 (799)
T ss_pred -----------------------h-------------------hhhhcccc-----c------ccCcccccCCCCchHHH
Confidence 0 00000000 0 000011122222 1
Q ss_pred -hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhH
Q 005632 533 -QCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWN 611 (687)
Q Consensus 533 -~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 611 (687)
..+....+..+...+..++|...+..+-.+.+. ...++++.+.++...|+..+|...|...+..+|++.....
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~ 722 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence 123335566788888899998888888776655 5688889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhh
Q 005632 612 CYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLK 684 (687)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~ 684 (687)
.++.++.+.|+ .....+..+++.+++.+|.++.+|..+|.++...|+.+.|..+|.-|+++.+.+|+..|+
T Consensus 723 Ala~~lle~G~--~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 723 ALAELLLELGS--PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred HHHHHHHHhCC--cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 99999999996 344455669999999999999999999999999999999999999999999999988775
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=5.9e-21 Score=171.61 Aligned_cols=380 Identities=19% Similarity=0.187 Sum_probs=239.3
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 143 (687)
+|.+..-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+..-|+.-+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632 144 SFYVEIGDYEKAAESYEQIQKLFPDNVD---ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~ 220 (687)
.+++++|+++.|...|..++..+|++.. +...++.+-. ...+......+...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e------------------------~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE------------------------HWVLVQQLKSASGSG 169 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH------------------------HHHHHHHHHHHhcCC
Confidence 6666666666666666666666664321 1111111000 001112223334445
Q ss_pred hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 221 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
++..|+.++...+++ .+.+..++...+.||...|++..|+..++.+-.... ++.+.++.++.+++..|+.+.++.
T Consensus 170 D~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred chhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHH
Confidence 556666666666655 555555555566666666666666665555544333 355556666666666666666666
Q ss_pred HHHHhhhccCCCcHHHH------------HHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHcCCH
Q 005632 301 YYHFLETNAGTDNGYLY------------LKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR----LTLASLLLEEAKE 364 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~~g~~ 364 (687)
..++.++. +|+.-..+ ..-+.-....++|.++++..+++++.+|..+.+. ..+..|+...|++
T Consensus 245 ~iRECLKl-dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 245 EIRECLKL-DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 66665555 44433222 1112334566889999999999999999855443 4477888889999
Q ss_pred HHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhh-hhhhhhhh
Q 005632 365 EEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK-VKRRLTKG 443 (687)
Q Consensus 365 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 443 (687)
.+|+..+.++++.+|.+. +++...+.+|.....|+.|+..|+...+.....+...+... .++....+
T Consensus 324 ~eAiqqC~evL~~d~~dv------------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDV------------QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999876 59999999999999999999999999876655444444322 11111222
Q ss_pred hhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhh
Q 005632 444 ILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQ 515 (687)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (687)
-.+..-+++.+.++ +.++|....|.+.+..|+|+++.++..+
T Consensus 392 ~kRDYYKILGVkRn------------------------------AsKqEI~KAYRKlAqkWHPDNFqdEeEK 433 (504)
T KOG0624|consen 392 GKRDYYKILGVKRN------------------------------ASKQEITKAYRKLAQKWHPDNFQDEEEK 433 (504)
T ss_pred ccchHHHHhhhccc------------------------------ccHHHHHHHHHHHHHhcCCccccCHHHH
Confidence 22333445554433 3345555677888899999998886643
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-19 Score=180.45 Aligned_cols=366 Identities=17% Similarity=0.074 Sum_probs=296.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--CCCHHHHHHHHH-HHHHcCC
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--PKDSALWKQLLT-FAVQKGD 117 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~ 117 (687)
...+...|+++.+.+.|++++...-...+.|+.++.++...|.-..|+..++..+... |+++..+...+. |..+.+.
T Consensus 330 t~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 330 TFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 5567788999999999999998877788999999999999999999999999999888 777776666555 4556789
Q ss_pred HHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 118 TAQAMYYIRQAIRAE-----PKDISLRIHLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~-----p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 181 (687)
+++++.+..+++... --.+..+..+|.+|..+- ...++++.++++++.+|+|+.+.+.++.-|.
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYA 489 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 999999999998833 123556777777775432 2568899999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHH
Q 005632 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261 (687)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (687)
.+++.+.|....+++++.++.+.. .+|..++.++...+++.+|+...+.++..++. +.........+-...++.+
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~-~~whLLALvlSa~kr~~~Al~vvd~al~E~~~----N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSA-KAWHLLALVLSAQKRLKEALDVVDAALEEFGD----NHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh----hhhhchhhhhhhhhcccHH
Confidence 999999999999999999777654 48999999999999999999999999988442 2222222222222233333
Q ss_pred HHHHHHHHHhhhC--------------------------------------------------------c------h---
Q 005632 262 KAEILFADLQWKN--------------------------------------------------------A------I--- 276 (687)
Q Consensus 262 ~A~~~~~~~~~~~--------------------------------------------------------~------~--- 276 (687)
+++..+...+... | .
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS 644 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence 3333322211100 0 0
Q ss_pred ---hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 277 ---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 277 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
.....|...+..+...+..++|..++.++... .|..+..|+..|.++...|++.+|.+.|..++.++|+++.+...
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 12345678889999999999999999999887 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHH--hcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 354 LASLLLEEAKEEEAIT--LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 354 la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
+|.++.+.|+..-|.. ++..++..+|.++ ++|+.+|.++..+|+.++|.++|...++--
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~------------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNH------------EAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999888877 9999999999887 588999999999999999999999988543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=1.1e-22 Score=196.59 Aligned_cols=263 Identities=21% Similarity=0.232 Sum_probs=106.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 183 (687)
..+|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35677777778888888877654433 367777777777777788888888888888887777777777777777 677
Q ss_pred CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHH
Q 005632 184 GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 263 (687)
Q Consensus 184 g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 263 (687)
+++++|+.++++..+..++. . .+...+.++...++++++...++++.... ..+.+...+..+|.++.+.|++++|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~-~--~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDP-R--YLLSALQLYYRLGDYDEAEELLEKLEELP--AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccc-c--hhhHHHHHHHHHhHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 78888888777776655432 2 45566677777788888888877766541 1245667777788888888888888
Q ss_pred HHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 264 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
+..+++++...|. ++.+...++.++...|+++++...+...... .|.++..+..+|.++..+|++++|+.+|+++++.
T Consensus 166 ~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 8888888887774 7788888888888888888888888777765 4777778888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 344 FEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 344 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
+|+++.++..+|.++...|+.++|..+..++..
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 888888888888888888888888888887654
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=3.6e-20 Score=195.37 Aligned_cols=251 Identities=13% Similarity=0.028 Sum_probs=164.4
Q ss_pred ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK---------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (687)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 153 (687)
++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356777777777777777777777777665432 33677777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632 154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
+|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+.. .+..++.++...|++++|+..+++++
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--AGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777654 23344555666677777777777766
Q ss_pred HHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc
Q 005632 234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN 313 (687)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 313 (687)
... .|.....+..+|.++...|++++|...+.++....| ........++..+...|+ +|...++++.+. ....
T Consensus 434 ~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~-~~~~ 506 (553)
T PRK12370 434 SQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNSE--RALPTIREFLES-EQRI 506 (553)
T ss_pred Hhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccHH--HHHHHHHHHHHH-hhHh
Confidence 551 244455666677777777777777777777655544 356666666666666663 666666655543 1111
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
+.-......++.-.|+.+.+..+ +++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11122266667777777776666 555543
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=2.2e-19 Score=182.52 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-HHHHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQ 114 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 114 (687)
..+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3567788888888888888888888888887777777778888888888888888888888777764 455556888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCChHHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK----TGAQLFLKCGQTARSI 190 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~la~~~~~~g~~~~A~ 190 (687)
.|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 888888888888888888888888888888888888888888888888876544433221 1112223334444455
Q ss_pred HHHHHHHHhCCCC--CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHH--HHHHHHHHHHcCCHHHHHHH
Q 005632 191 GILEEYLKVHPSD--ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL--KVKAGICYLRLGNMEKAEIL 266 (687)
Q Consensus 191 ~~~~~~~~~~p~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~ 266 (687)
..+..+....|.. ....++..++..+...|++++|...++++++.. |.+... ...........++.+.++..
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 5666666666632 112356677777777777777777777777762 222211 01112222223455555555
Q ss_pred HHHHhhhCchhhH--HHHHHHHHHHHhcCChHHHHHHHHH--hhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632 267 FADLQWKNAIDHA--DLITEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 267 ~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (687)
+++.+...|. ++ .....+|.+++..|++++|.++|++ +... .|+. ..+..+|.++...|+.++|.+++++++.
T Consensus 322 ~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 322 IEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555443 44 4555555555555555555555553 3222 2322 2233555555555555555555555543
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=3.3e-22 Score=193.37 Aligned_cols=257 Identities=22% Similarity=0.327 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRL--SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
..|..++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4455555555555555555443332 245555555555555555555555555555555555555555555555 4555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
++++|+.+++++.+.. .++..+.....++...++++++...++++.... +.++..+..+|.++...|++++|+..++
T Consensus 92 ~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555433 234444445555555555555555555544433 3445555555555555555555555555
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 005632 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 274 (687)
Q Consensus 195 ~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 274 (687)
++++.+|++.. +...++.++...|+++++...++..... .+.+..++..+|.++...|++++|+.++++++...
T Consensus 171 ~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~----~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 171 KALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKA----APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHH----CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55555555543 3445555555555555555555544444 22222333344444444444444444444444433
Q ss_pred chhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632 275 AIDHADLITEVADTLMSLGHSNSALKYYHF 304 (687)
Q Consensus 275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (687)
|. ++..+..+|.++...|+.++|..++.+
T Consensus 245 p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 PD-DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp TT--HHHHHHHHHHHT--------------
T ss_pred cc-ccccccccccccccccccccccccccc
Confidence 32 444444444444444444444444433
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=1.6e-19 Score=183.58 Aligned_cols=302 Identities=14% Similarity=0.078 Sum_probs=209.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 005632 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DATKTGAQLFLKCGQ 185 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~ 185 (687)
.-|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 4455666677777777777777777776666666677777777777777777777777766664 455556777777777
Q ss_pred hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHH
Q 005632 186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 265 (687)
Q Consensus 186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 265 (687)
+++|...++.+.+..|+++. ++..++.++...|++++|...+.+..+....+.+....+......-....+..+++..
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~--~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKE--VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 77777777777777777764 5667777777777777777777776655111111111111122222233344444455
Q ss_pred HHHHHhhhCch---hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHH--HHHHHHHHHhhcHHHHHHHHHHH
Q 005632 266 LFADLQWKNAI---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLY--LKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 266 ~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~a 340 (687)
.+..+....|. +++..+..++..+...|++++|.+.++++++. .|++.... ..........++.+.+++.++++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 66666555553 37788888888888888888888888888876 56655321 22223334457788899999999
Q ss_pred HHhcCCCH--HHHHHHHHHHHHcCCHHHHHHhcC--CCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632 341 LDRFEDNI--DARLTLASLLLEEAKEEEAITLLS--PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDA 416 (687)
Q Consensus 341 l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 416 (687)
++..|+++ .....+|+++.+.|++++|.++|+ .+.+..|+. +.+..+|.++.+.|+.++|.++
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-------------~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-------------NDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-------------HHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999 888889999999999999999999 566677754 3566899999999999999888
Q ss_pred HHHHHHHh
Q 005632 417 IFPLVCES 424 (687)
Q Consensus 417 ~~~~~~~~ 424 (687)
+++.+...
T Consensus 393 ~~~~l~~~ 400 (409)
T TIGR00540 393 RQDSLGLM 400 (409)
T ss_pred HHHHHHHH
Confidence 88776554
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-19 Score=165.04 Aligned_cols=312 Identities=13% Similarity=0.046 Sum_probs=274.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
.|.++.....+..+..++-+-....|++...+..+|.+++..|++++|+..|+++..++|......-..|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 34444444445555666666677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
.-.......+........-|+.-+..++..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 99999999998887778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHH-HHHH-HcCCHHHHHHHHHHHhhhCchh
Q 005632 200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG-ICYL-RLGNMEKAEILFADLQWKNAID 277 (687)
Q Consensus 200 ~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~ 277 (687)
.|...+ +|..+..+|...|++.+|...-..+... -+.+...+..+| .++. .-.--++|...+++.+...|.
T Consensus 364 ap~rL~--~Y~GL~hsYLA~~~~kEA~~~An~~~~~----~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 364 APYRLE--IYRGLFHSYLAQKRFKEANALANWTIRL----FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred chhhHH--HHHHHHHHHHhhchHHHHHHHHHHHHHH----hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 998876 7999999999999999999999999988 555666666665 3333 334458899999999999885
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (687)
...+...++.++...|.+..++.++++.+.. ..+...+..+|.++...+.+.+|.++|..++.++|++..+...+-.+
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 8999999999999999999999999999965 55667899999999999999999999999999999998887776554
Q ss_pred HHH
Q 005632 358 LLE 360 (687)
Q Consensus 358 ~~~ 360 (687)
-..
T Consensus 515 EK~ 517 (564)
T KOG1174|consen 515 EKS 517 (564)
T ss_pred Hhc
Confidence 433
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.87 E-value=3.3e-19 Score=181.56 Aligned_cols=599 Identities=15% Similarity=0.045 Sum_probs=347.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQ 114 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 114 (687)
+-..|..|...-+...|.++|.++.+++|.+..+....+..|....+++.|....-.+-+..|.. ...|..+|..|..
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 34568888877799999999999999999999999999999999999999999977777766643 3456778999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
.+++..|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+.-..+..+.+....|+|.+|+..+.
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCC-----cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc----CCCc-----------------------
Q 005632 195 EYLKVHPSDA-----DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS----GKEL----------------------- 242 (687)
Q Consensus 195 ~~~~~~p~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~----------------------- 242 (687)
..+....... ....+...+..+...|-..+|..++++.++.+.- ....
T Consensus 655 ~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~v 734 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIV 734 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccch
Confidence 8876543221 1234555555566666666777777666553210 0000
Q ss_pred ---------------------------------------hHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhCc
Q 005632 243 ---------------------------------------PLKLKVKAGICYLR--------LGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 243 ---------------------------------------~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~ 275 (687)
....|+++|.-|++ +.+...|+.++.+++....
T Consensus 735 n~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a 814 (1238)
T KOG1127|consen 735 NMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA 814 (1238)
T ss_pred HHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh
Confidence 01223333333332 1111244444444444433
Q ss_pred hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632 276 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (687)
Q Consensus 276 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (687)
. +...|..+|.+ ...|++.-|..+|-+.... .|.....|.++|.++....+++-|...|.++..++|.+...|...+
T Consensus 815 n-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 815 N-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEA 891 (1238)
T ss_pred c-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence 2 44444444444 3334555555555444433 4555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhh
Q 005632 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK 435 (687)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 435 (687)
.+....|+.-++...+............ ..+...+..--......|+.++.+.....+...++-......
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gk-------a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~--- 961 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGK-------AKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL--- 961 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccc-------cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh---
Confidence 5555555555555555432222111111 001112233334445666666666655555433322211100
Q ss_pred hhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 005632 436 VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAA--------RARKKIQKKEALKEEKKALAKAAGVEWHSD 507 (687)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (687)
..|+.. ..+....+..+.+... |....++....+.+..- .-......+-.
T Consensus 962 ------------------~~p~~~--fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv--ak~~~gRL~ls 1019 (1238)
T KOG1127|consen 962 ------------------GHPQLC--FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV--AKPDAGRLELS 1019 (1238)
T ss_pred ------------------cCcchh--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhhhhhhh
Confidence 000000 0000001111111111 11111111111000000 00000000000
Q ss_pred CCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccC
Q 005632 508 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST 587 (687)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g 587 (687)
....+. +. ...-....+..+........+.-.|++.++++.+++++.+..+.- ....+....+.+-...|
T Consensus 1020 lgefe~--A~-----~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~---d~vvLl~kva~~~g~~~ 1089 (1238)
T KOG1127|consen 1020 LGEFES--AK-----KASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSES---DKVVLLCKVAVCMGLAR 1089 (1238)
T ss_pred hcchhh--Hh-----hhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhccccc---chhhhhHHHHHHHhhcc
Confidence 000010 00 000011122223334444445668999999999999998876631 01122222233333557
Q ss_pred CCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCC----CCCccceeccccccccchHH
Q 005632 588 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKD----CVPPIIISGHQFTMASHHQD 663 (687)
Q Consensus 588 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~~g~~~~~~~~~~~ 663 (687)
.-+.|...+-.++...|-.......+..++.-..+ ..-..-+..=+.+.|. +.++-++.-.++..+|+-..
T Consensus 1090 ~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~d-----a~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~ 1164 (1238)
T KOG1127|consen 1090 QKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDAD-----AHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVA 1164 (1238)
T ss_pred cchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhh-----hhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHH
Confidence 88889999999999988888888888888777766 1111111111222222 23333444455666777777
Q ss_pred HHHHHHHHHhhCCCChhhhhhc
Q 005632 664 AARCYLEAYKLLPENPLINLKR 685 (687)
Q Consensus 664 A~~~~~~a~~~~P~~p~~~l~~ 685 (687)
--...+|++.-+|+||-++-.|
T Consensus 1165 vk~~~qr~~h~~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1165 VKKQIQRAVHSNPGDPALWSLL 1186 (1238)
T ss_pred HHHHHHHHHhcCCCChHHHHHH
Confidence 7788899999999999876443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=1.9e-19 Score=189.85 Aligned_cols=266 Identities=14% Similarity=0.075 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc---------CChHHHHHHHHHHhccCC
Q 005632 32 PGVTKMLGEASLQYAY---GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSP 99 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p 99 (687)
.+...++.+|...+.. +++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 3444455556544432 3456777777777777777777777777766533 236777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777776666566666
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632 180 FLKCGQTARSIGILEEYLKVH-PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (687)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (687)
++..|++++|+..+++++... |+++. .+..+|.++...|++++|...+.++... .+........++..+...|
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~--~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPI--LLSMQVMFLSLKGKHELARKLTKEISTQ----EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHH--HHHHHHHHHHhCCCHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhccH
Confidence 666777777777777777664 44443 4667777777777777777777776555 5556666666666666666
Q ss_pred CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (687)
++|...++.++..... .+........++.-.|+-+.+..+ +++.+
T Consensus 490 --~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 --ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred --HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 3666666665443322 222223366666666666666665 55443
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.6e-19 Score=162.07 Aligned_cols=378 Identities=16% Similarity=0.086 Sum_probs=311.5
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc-----------
Q 005632 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH----------- 96 (687)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------- 96 (687)
...+.+.......+.++...++-+.|+..+.++.... ..+..-..++..+-.-++-.++.-.+...+.
T Consensus 91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 3445577778888999999999999998876653321 1344555555555555544444433333322
Q ss_pred --------------------cCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632 97 --------------------LSPKDSALWK---QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (687)
Q Consensus 97 --------------------~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 153 (687)
..|..++.|. .+|.++....-+..+..++-.-....|++...+..+|.++...|++.
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 2344444433 23444444445555666666677788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632 154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
+|+..|+++.-++|.+....-..|.++...|++++-......++........ -|+.-+...+..+++..|+.+-++++
T Consensus 250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS--HWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh--hhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998888755443 47788889999999999999999999
Q ss_pred HHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc
Q 005632 234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN 313 (687)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 313 (687)
+. ++.+...+...|.++...|+.++|+-.|+.+....|. ..+.|..+...|...|.+.+|.-.-+.+... .|.+
T Consensus 328 ~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~s 401 (564)
T KOG1174|consen 328 DS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNS 401 (564)
T ss_pred cc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcc
Confidence 99 8999999999999999999999999999999988875 8999999999999999999999999998876 7888
Q ss_pred HHHHHHHH-HHHH-HhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhh
Q 005632 314 GYLYLKLA-ECYL-SLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW 391 (687)
Q Consensus 314 ~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 391 (687)
+.++..+| .++. .-.--++|.+++++++.+.|....+-..++.++...|+++.++.++++.+...|++.
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--------- 472 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--------- 472 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH---------
Confidence 88888886 4443 334468999999999999999999999999999999999999999999999998774
Q ss_pred hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632 392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (687)
Q Consensus 392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 427 (687)
.+..||.++...+.+.+|.+.|...++.-+..
T Consensus 473 ----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 473 ----LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred ----HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 89999999999999999999999998776553
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=9.7e-20 Score=162.79 Aligned_cols=337 Identities=15% Similarity=0.117 Sum_probs=277.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--------CChHHHHHHHHHH-hcc--CCCCH----
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL--------GNHKSAFDFYVIA-AHL--SPKDS---- 102 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a-l~~--~p~~~---- 102 (687)
+-+|..+++...|+...+++..+++..|++-.+|.....++... .+-.+|...++.- +.. .|...
T Consensus 8 ~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p 87 (478)
T KOG1129|consen 8 YFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTP 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCC
Confidence 45688999999999999999999999999999999888887653 2333555555421 111 01100
Q ss_pred --------------------------------------------------------------------------------
Q 005632 103 -------------------------------------------------------------------------------- 102 (687)
Q Consensus 103 -------------------------------------------------------------------------------- 102 (687)
T Consensus 88 ~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nls 167 (478)
T KOG1129|consen 88 FTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNLS 167 (478)
T ss_pred CCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeehh
Confidence
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 103 ------------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE---PK-------DISLRIHLASFYVEIGDYEKAAESYE 160 (687)
Q Consensus 103 ------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (687)
-.....-.++...++...|-......++.. |. +......+|.||..+|.+.+|...++
T Consensus 168 RLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlq 247 (478)
T KOG1129|consen 168 RLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQ 247 (478)
T ss_pred hcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 000011123444555555554444443321 11 12234569999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC
Q 005632 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK 240 (687)
Q Consensus 161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 240 (687)
..++..| .++.+..|+.+|.+..++..|+..+...++..|.+.. .+...+.++...+++++|.++|+.+++. +
T Consensus 248 ssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT--~l~g~ARi~eam~~~~~a~~lYk~vlk~----~ 320 (478)
T KOG1129|consen 248 SSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT--YLLGQARIHEAMEQQEDALQLYKLVLKL----H 320 (478)
T ss_pred HHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh--hhhhhHHHHHHHHhHHHHHHHHHHHHhc----C
Confidence 9999876 6788999999999999999999999999999999886 5778999999999999999999999999 8
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC--CCcHHHHH
Q 005632 241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYLYL 318 (687)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 318 (687)
+.+.++...+|.-|+..++++-|+.+|++++..... +++.+.++|.+++..++++-++..|++++.... ....++|+
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY 399 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence 889998888999999999999999999999998775 999999999999999999999999999987632 34678999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (687)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (687)
++|.+....|++.-|..+|+-++..+|++.+++.+|+.+-.+.|+.++|..+++.+.+..|.-.
T Consensus 400 Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 400 NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999888654
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.3e-16 Score=146.61 Aligned_cols=456 Identities=15% Similarity=0.107 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
..++.-|.--..++++..|..+|++++..+..+...|...+.+-++......|...+++++.+-|.-...|+....+-..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33444455555555566666666666665555555666666666666666666666666666656555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
+|+...|.+.|++-++..| +..+|......-...+..+.|...|++.+-..| ....|...+..-.+.|+..-|..+|+
T Consensus 154 LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6666666666666665555 334455555555555556666666666555554 34455555555556666666666666
Q ss_pred HHHHhCCCCCcH-HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCH---HHHH-----H
Q 005632 195 EYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM---EKAE-----I 265 (687)
Q Consensus 195 ~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~-----~ 265 (687)
++++...++... ..+...+..-..++.++.|...|+-++...|.+ ....++-.....--+-|+. ++++ -
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 665554433221 123334444455555555655555555553211 1122222222222233332 1221 1
Q ss_pred HHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH--------HHHHHHHH-HHHHhhcHHHHHHH
Q 005632 266 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG--------YLYLKLAE-CYLSLKERAHAIMF 336 (687)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~la~-~~~~~g~~~~A~~~ 336 (687)
.|+..+..+|. +.+.|+....+....|+.+.-.+.|++++...+|... .+|.+.+. .-....+.+.+.+.
T Consensus 310 qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 23334444443 5555666666666666666666666666655333211 11122111 11134455666666
Q ss_pred HHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchH
Q 005632 337 FYKALDRFEDN----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPED 412 (687)
Q Consensus 337 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 412 (687)
|+.++++-|.. ..+|+..+....++.+...|.+.+-.++-..|.+. ++-....+-.++++++.
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-------------lFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-------------LFKGYIELELQLREFDR 455 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-------------HHHHHHHHHHHHhhHHH
Confidence 66666665533 45555566666666666666666666666665442 44444444455555555
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 005632 413 FVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEE 492 (687)
Q Consensus 413 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (687)
....|++.+.
T Consensus 456 cRkLYEkfle---------------------------------------------------------------------- 465 (677)
T KOG1915|consen 456 CRKLYEKFLE---------------------------------------------------------------------- 465 (677)
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 5555544443
Q ss_pred HHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhH
Q 005632 493 KKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKK 572 (687)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~ 572 (687)
-.|+++......+.+...+|+.+.|..+++-|+.... .+..
T Consensus 466 -----------------------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmp 506 (677)
T KOG1915|consen 466 -----------------------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMP 506 (677)
T ss_pred -----------------------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccH
Confidence 3566677778889999999999999999999875322 2333
Q ss_pred HHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHH
Q 005632 573 EELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLS 618 (687)
Q Consensus 573 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 618 (687)
..++-.....-...|.++.|..+++.+|...+... .|.-++..-.
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 44444555556677999999999999999988776 8888887765
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=166.20 Aligned_cols=274 Identities=16% Similarity=0.128 Sum_probs=244.5
Q ss_pred HHHHHcCChHHHHHHHHHHhccC---C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 76 LAHSALGNHKSAFDFYVIAAHLS---P-------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
.+++..+|...|-......++.+ | .+.+....+|.||.+.|-+.+|...++.+++..| .++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 45667788888887666655442 1 1223335789999999999999999999999876 67889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A 225 (687)
|....++..|+..|.+.++..|.+...+...++++..+++.++|.++|+.+++.+|.+.+ +.-.+|.-|+..++++-|
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 556788889999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--CchhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK--NAIDHADLITEVADTLMSLGHSNSALKYYH 303 (687)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (687)
+.+|++.++. ...+++++.++|.|.+..++++-++..|++++.. .|....++|+++|.+....|++.-|..+|+
T Consensus 344 lryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 344 LRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 9999999999 7888999999999999999999999999998764 355678999999999999999999999999
Q ss_pred HhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (687)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (687)
-++.. ++++..++.++|.+-.+.|+.++|..++..+-...|+-.+..++++.+
T Consensus 420 laL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 420 LALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99976 899999999999999999999999999999999999888877776644
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=1.4e-18 Score=175.56 Aligned_cols=299 Identities=16% Similarity=0.132 Sum_probs=206.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVE 148 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~~~~~ 148 (687)
.+..|......|++++|.+.+.+.-...+. +..++.+ +......|+++.|..++.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 455566666677777777666665544332 3333333 555577777777777777777777766433 3344777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH---HHcchHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL---MENNAYEKT 225 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~---~~~~~~~~A 225 (687)
.|+++.|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++.. .-......+ .........
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 7888888888888887788887777777888888888888887777777665553321 110000111 111111122
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 305 (687)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (687)
...+.+..+..+...+..+.+...++..+...|+.++|...+++.+...+ ++......+.+ ..++++++++.+++.
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~~l~~~l--~~~~~~~al~~~e~~ 320 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLVLLIPRL--KTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHhhc--cCCChHHHHHHHHHH
Confidence 33344444433333566778888899999999999999999998887433 44444444433 448899999999988
Q ss_pred hhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632 306 ETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL 377 (687)
Q Consensus 306 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 377 (687)
.+. +|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++...|+.++|..++++++..
T Consensus 321 lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 321 IKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred Hhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 877 8999999999999999999999999999999999987644 557899999999999999999887654
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=4.5e-18 Score=171.87 Aligned_cols=297 Identities=14% Similarity=0.094 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHH-HHHHHHcCChHHHHHHHHHHhccCCCCHHHH-HHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL-GLAHSALGNHKSAFDFYVIAAHLSPKDSALW-KQLLTFA 112 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~ 112 (687)
...+..|...+..|+|++|.+.+.+.-+..+ .+..++.+ +.+....|+++.|..++.++.+.+|++.... ...+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3467889999999999999988887655433 35555555 6666999999999999999999999876443 4459999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK--------TGAQLFLKCG 184 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------~la~~~~~~g 184 (687)
...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.++.+..+.++.... .+........
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988776544222 2222222233
Q ss_pred ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 264 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 264 (687)
+.+.....++..-+..|+++. +...++..+...|+.++|...++++++. .+.. .+....+. ...+++++++
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~--~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~-~l~~l~~~--l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVA--LQVAMAEHLIECDDHDTAQQIILDGLKR----QYDE-RLVLLIPR--LKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCH-HHHHHHhh--ccCCChHHHH
Confidence 334444444444444555654 7889999999999999999999999885 3322 22222332 3459999999
Q ss_pred HHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632 265 ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF 344 (687)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 344 (687)
..+++.++..|. ++..+..+|.++...|++++|.+.|++++.. .|++ ..+..++.++..+|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999885 9999999999999999999999999999977 5654 456689999999999999999999998764
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=7.1e-19 Score=169.90 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSP---N-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566788888888886433 2 36678888999888999999999999999989988888999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 202 (687)
..|+++++++|++..++..+|.++...|++++|++.|+++++.+|+++... ....+....+++++|+..+.+.....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 999999998998888888899988888999999999999998888887422 2223345567888888888776654332
Q ss_pred CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH
Q 005632 203 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279 (687)
Q Consensus 203 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 279 (687)
.. | ..+.+....|+..++ ..++.+..... ...+....+++.+|.++...|++++|+.+|++++..+|++..
T Consensus 198 ~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 198 EQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred cc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 22 1 124444455555433 23333332110 003344566777777777777777777777777776665555
Q ss_pred HHHHHHHHHHHh
Q 005632 280 DLITEVADTLMS 291 (687)
Q Consensus 280 ~~~~~la~~~~~ 291 (687)
+..+.+..+...
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.85 E-value=3.3e-17 Score=160.31 Aligned_cols=489 Identities=14% Similarity=0.075 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..++..+.-.+..++|...++..+.+++..|.+++.+...|..+...|+.++|..+...++..++.+...|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 34555555566777888888888888888888888888888888888888888888888888777777788888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH 228 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~ 228 (687)
..+|++|+.+|+.++.+.|+|..++..++.+..++++++.....-.+.++..|.... .|...+..+...|++..|...
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra--~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA--SWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888777777777777777654 566777777777887777777
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
++...+... ..+.... -...........+..+.|.+++|++.+......
T Consensus 166 l~ef~~t~~-~~~s~~~------------------------------~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 166 LEEFEKTQN-TSPSKED------------------------------YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHHHHhhc-cCCCHHH------------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 776665511 0011000 123445555666777788888888887655433
Q ss_pred cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HhcCCCCcCCcccCCCCCC
Q 005632 309 AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLDMNSDKS 387 (687)
Q Consensus 309 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~ 387 (687)
.-+........|.++..++++++|...|...+..+|++...+..+-.++..-.+.-++. ..|....+..|...
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e----- 288 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE----- 288 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-----
Confidence 33445556678889999999999999999999999999888888777776333444444 55665555555443
Q ss_pred ChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCC
Q 005632 388 NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPA 467 (687)
Q Consensus 388 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (687)
....++.-.. .| ++-...+...++..+.. + -+++|..+.+.
T Consensus 289 --------~p~Rlplsvl-~~--eel~~~vdkyL~~~l~K------g----------------------~p~vf~dl~SL 329 (700)
T KOG1156|consen 289 --------CPRRLPLSVL-NG--EELKEIVDKYLRPLLSK------G----------------------VPSVFKDLRSL 329 (700)
T ss_pred --------cchhccHHHh-Cc--chhHHHHHHHHHHHhhc------C----------------------CCchhhhhHHH
Confidence 2222222221 22 23323333333222111 0 00001000000
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCCCCchhhhhhccCCCCCcccCcchh-hHHHHHHHHH
Q 005632 468 APKSELLVAARARKKIQKKEALKEEKKALAKAAGVE----WHSDDTDDESQQEAFREPPLPNLLKNEEN-QCLIIDLCKA 542 (687)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 542 (687)
...-+... -+++- .......++ .+..+... ...|-. .-...-++.-
T Consensus 330 ---yk~p~k~~---~le~L--------vt~y~~~L~~~~~f~~~D~~~---------------~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 330 ---YKDPEKVA---FLEKL--------VTSYQHSLSGTGMFNFLDDGK---------------QEPPTTLLWTLYFLAQH 380 (700)
T ss_pred ---HhchhHhH---HHHHH--------HHHHHhhcccccCCCcccccc---------------cCCchHHHHHHHHHHHH
Confidence 00000000 00000 000000111 11110000 011111 1133467888
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632 543 LASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGK 622 (687)
Q Consensus 543 ~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 622 (687)
+...|+++.|..+++.|+.-.|. ..++..+.++++.+.|+.++|..++..+-+.+-.|..+-.-.+....+...
T Consensus 381 ~D~~g~~~~A~~yId~AIdHTPT------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDHTPT------LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHcccHHHHHHHHHHHhccCch------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 99999999999999999876665 567888889999999999999999999998887776665567777778777
Q ss_pred CcccccchHHHHHHHHhhCCC---------CCCccceeccccccccchHHHHHHHHHHHhh
Q 005632 623 INSKHSKHSKFIRYLRAKYKD---------CVPPIIISGHQFTMASHHQDAARCYLEAYKL 674 (687)
Q Consensus 623 ~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 674 (687)
..+|...+.......-+ |+-..+-.|..+..+|++-.|+.-|..+.++
T Consensus 455 ----i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 455 ----IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred ----cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 55666555444433211 1112345788888888998888887766543
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=1.9e-18 Score=147.87 Aligned_cols=204 Identities=19% Similarity=0.136 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
......+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 189 (687)
++.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|.++|+++++.+|+.+.....++..++..|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999999973 4556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 237 (687)
..++++.....+-.. ..+.....+....|+-+.+-++=.+....+|
T Consensus 193 r~~~~~~~~~~~~~A--~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 193 RLYLERYQQRGGAQA--ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHhcccccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999888777443 3666777888888999888888777777743
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.4e-16 Score=150.90 Aligned_cols=472 Identities=13% Similarity=0.122 Sum_probs=314.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
....++..-..+...|+|++|.+...+++...|+++.++...-.+..+.++|++|+...++-...... ....+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHH
Confidence 34678888889999999999999999999999999999999999999999999999655543322211 22237889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+...+.+.++.+.......+-.... -.+ .
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~- 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q- 162 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-
Confidence 99999999999999 4566777788999999999999999999999999887776655443332221110 001 1
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh----ccCCCc-------hHHHHHHHHHHHHHcCCHH
Q 005632 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR----FSGKEL-------PLKLKVKAGICYLRLGNME 261 (687)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~-------~~~~~~~l~~~~~~~~~~~ 261 (687)
..+.....|++ ....+++.+.++...|+|.+|++.+++++.+. ..++.. -..+...++.++..+|+..
T Consensus 163 ~~q~v~~v~e~-syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVPED-SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 23333344433 23578999999999999999999999995542 111111 1245678899999999999
Q ss_pred HHHHHHHHHhhhCchhhHHHH---HHHHHHHHhcCChH-HHHHHHHHhhhc---------cCCCcHHHHHHHHHHHHHhh
Q 005632 262 KAEILFADLQWKNAIDHADLI---TEVADTLMSLGHSN-SALKYYHFLETN---------AGTDNGYLYLKLAECYLSLK 328 (687)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~-~A~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g 328 (687)
+|...|..++..++.+.+... +++..+-....-++ .++..++..... .......++.+.+.+.+..+
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988876443222 22221111111111 122222211110 11223345566666666666
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcC
Q 005632 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKG 408 (687)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 408 (687)
.-+.+.+.....-...|...--.........+...+.+|.+++....+.+|...- .+...++.+...+|
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~-----------~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK-----------VVLLLRAQLKISQG 390 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH-----------HHHHHHHHHHHhcC
Confidence 6666666655554445544322233333333444788999999998888887632 58899999999999
Q ss_pred CchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHH
Q 005632 409 MPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEA 488 (687)
Q Consensus 409 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (687)
+++.|++.+.......... ++.
T Consensus 391 n~~~A~~il~~~~~~~~ss-----------------------~~~----------------------------------- 412 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSS-----------------------ILE----------------------------------- 412 (652)
T ss_pred CHHHHHHHHHHHhhhhhhh-----------------------hhh-----------------------------------
Confidence 9999999888665211000 000
Q ss_pred HHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCc
Q 005632 489 LKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILP 568 (687)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~ 568 (687)
+...| .+...+..++...+..+-|..++..++.--....+
T Consensus 413 -------------------------------------~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 413 -------------------------------------AKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred -------------------------------------hccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 00111 12223333455556666666777666643333222
Q ss_pred -hhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632 569 -LEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGK 622 (687)
Q Consensus 569 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 622 (687)
......++...+..-+..|+.++|...++++++.+|++..+...+...+.+...
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence 222234444555666667999999999999999999999999999888888776
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=3.9e-19 Score=171.92 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
-|..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||.+|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTA 187 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~ 187 (687)
.-.+|+.++.+-+...|........ ..........+..-.+.|..+....| .++++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999998877654321110 00011112224455667777777777 68899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHH
Q 005632 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 267 (687)
Q Consensus 188 ~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 267 (687)
+|+.+|+.++...|++.. .|+.||..+....+.++|+..|.+++++ .|..+.+++++|..++.+|.|.+|..+|
T Consensus 448 raiDcf~~AL~v~Pnd~~--lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYL--LWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHhcCCchHH--HHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999875 7999999999999999999999999999 8888899999999999999999999999
Q ss_pred HHHhhhCch-----h----hHHHHHHHHHHHHhcCChHHH
Q 005632 268 ADLQWKNAI-----D----HADLITEVADTLMSLGHSNSA 298 (687)
Q Consensus 268 ~~~~~~~~~-----~----~~~~~~~la~~~~~~g~~~~A 298 (687)
-.++...+. + +..+|..|=.++...++.+-+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 888764432 0 123455554555555554433
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=4.3e-18 Score=164.47 Aligned_cols=240 Identities=16% Similarity=0.105 Sum_probs=167.6
Q ss_pred cCChHHHHHHHHHHhccC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 81 LGNHKSAFDFYVIAAHLS---PK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156 (687)
Q Consensus 81 ~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 156 (687)
.+..+.++..+.+++... |. .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888888888643 33 36779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632 157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR 236 (687)
Q Consensus 157 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 236 (687)
..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.. .....+....+++++|+..+.+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR---ALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999988631 112233455678999999997766441
Q ss_pred ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHH
Q 005632 237 FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 316 (687)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 316 (687)
+... +. .+.+....|+...+ ..++.+...... .... .|..+.+
T Consensus 196 ----~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~----------------------------~~~l-~~~~~ea 238 (296)
T PRK11189 196 ----DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATD----------------------------NTEL-AERLCET 238 (296)
T ss_pred ----Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCC----------------------------cHHH-HHHHHHH
Confidence 1111 11 34444555655443 233333211110 0011 2334455
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 005632 317 YLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLE 360 (687)
Q Consensus 317 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 360 (687)
|+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 66666666666666666666666666654 444554444444433
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=8e-18 Score=159.46 Aligned_cols=203 Identities=21% Similarity=0.203 Sum_probs=178.7
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+.....++..|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 44567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
++...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998753 45567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
|...+++++...|.+.. .+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAE--SLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999888766554 5667888888899999998887776544
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=1.4e-17 Score=142.66 Aligned_cols=209 Identities=21% Similarity=0.218 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005632 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216 (687)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~ 216 (687)
.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+ ++++.|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHHH
Confidence 467778888888888888888888888888888888888888888888888888888888888888887 788888888
Q ss_pred HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChH
Q 005632 217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN 296 (687)
Q Consensus 217 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 296 (687)
+.+|++++|...|++++.. +..+.....+.++|.|..+.|+++.|..+|++++..+|. .+.....++..++..|+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 8888888888888888764 334556677888888888888888888888888888874 8888888888888899999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH
Q 005632 297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR 351 (687)
Q Consensus 297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 351 (687)
.|..+++..... .+.....+.....+-...|+-+.+-.+=.+.....|...+..
T Consensus 191 ~Ar~~~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 191 PARLYLERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 998888887766 446666776777788888888888888888888888876544
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.6e-18 Score=157.26 Aligned_cols=285 Identities=17% Similarity=0.150 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+.....+|..++...+|.+|+..+..+++..|+++..|...+.+++..|++++|.-..++.++++|..+..+...+.|+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 56667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHH---------------HhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAI---------------RAE---PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~---------------~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 174 (687)
...++..+|...++..- ..+ |....+....+.++...|++++|...--..+++++.+.++++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 99998888876665221 000 222345566778888888888888888888888888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 005632 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY 254 (687)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (687)
..|.++...++.+.|+..|++++.++|+.......+. .+.....+-..|.-.
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~----------------------------~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM----------------------------MPKKLEVKKERGNDA 259 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhh----------------------------hHHHHHHHHhhhhhH
Confidence 8888888888888888888888888887654211000 011112233344444
Q ss_pred HHcCCHHHHHHHHHHHhhhCch---hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHH
Q 005632 255 LRLGNMEKAEILFADLQWKNAI---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERA 331 (687)
Q Consensus 255 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 331 (687)
++.|++..|.+.|..++..+|. .+...|.+.+.+....|+..+|+...+.++.+ ++....++...|.|+..+++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554442 13444555555666666666666666666555 5555556666666666666666
Q ss_pred HHHHHHHHHHHhcCC
Q 005632 332 HAIMFFYKALDRFED 346 (687)
Q Consensus 332 ~A~~~~~~al~~~p~ 346 (687)
+|++.|+++++...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 666666666655443
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1e-17 Score=162.22 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=216.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 185 (687)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCcHHHHHHHH---------HHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632 186 TARSIGILEEYLKVHPSDADLSVIDLLV---------AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (687)
Q Consensus 186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la---------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (687)
-.+|...+...+...|.... ...+ .-......+..-.+.|-.+....+ ...++.+...||.+|..
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~----l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVH----LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHHHHhCccchh----ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhc
Confidence 99999999999988765431 1110 001111223344455555555522 23788899999999999
Q ss_pred cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 005632 257 LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF 336 (687)
Q Consensus 257 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 336 (687)
.|+|++|+.+|+.++...|. +...|..+|-.+....+.++|+..|++++++ .|....+++++|.++..+|.|.+|.++
T Consensus 443 s~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred chHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999885 9999999999999999999999999999998 899999999999999999999999999
Q ss_pred HHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632 337 FYKALDRFEDN----------IDARLTLASLLLEEAKEEEAITLLS 372 (687)
Q Consensus 337 ~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~ 372 (687)
|-.+|.+.+.. ..+|..|-.++...++.+-+.....
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 99999886641 2477777777777888776655543
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=3.3e-17 Score=155.24 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=150.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+..++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888777888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~ 224 (687)
...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|.+.. ++..++.++...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHH
Confidence 88888888888888877643 344566777777788888888888888887777777654 56677777777788877
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 225 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
|...+++++.. .+.....+..++.++...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777776 34445555566677777777777776666554
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.9e-18 Score=155.41 Aligned_cols=284 Identities=18% Similarity=0.135 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
-....|..++...+|.+|+..+..|++..|++...|...+.+++..|++++|....++.+++.|..+......+.++...
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 34556667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcchHHHHHHH
Q 005632 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQH 228 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~~~~~~A~~~ 228 (687)
++..+|.+.++ +..++ ....|+..+++.+..+...+. ..+-..-+.++...|++++|...
T Consensus 131 ~~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 131 SDLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 87777777666 11111 111222223332222211111 11233456666777777777777
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh-----------hHHHHHHHHHHHHhcCChHH
Q 005632 229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID-----------HADLITEVADTLMSLGHSNS 297 (687)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~ 297 (687)
--..+++ ++.+..+++..|.++...++.+.|+..|++.+..+|.. ....+..-|.-.++.|++..
T Consensus 192 a~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 7777766 66677777777777777777777777777777666531 22233334444445555555
Q ss_pred HHHHHHHhhhccCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 005632 298 ALKYYHFLETNAGTD----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSP 373 (687)
Q Consensus 298 A~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 373 (687)
|.+.|..++.. +|+ ++.+|.++|.+...+|+..+|+...+.+++++|....++...|.++..++++++|.+.+++
T Consensus 268 A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 268 AYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444 232 2334444455555555555555555555555555555555555555555555555555554
Q ss_pred CCcC
Q 005632 374 PKDL 377 (687)
Q Consensus 374 a~~~ 377 (687)
+.+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 4443
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8e-15 Score=138.18 Aligned_cols=488 Identities=12% Similarity=0.064 Sum_probs=378.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 135 (687)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 135 (687)
.|+..+..+--+...|...|..-..++++..|.+.|++|+..+..+...|...+.+-+.......|..++.+++..-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 44555555556777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005632 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI 215 (687)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~ 215 (687)
...|+....+-..+|+...|.+.|++.++..|+ ..+|......-.+.+..+.|..+|++.+-.+|+-. .|...+..
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~---~wikyarF 216 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS---NWIKYARF 216 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH---HHHHHHHH
Confidence 999999999999999999999999999999885 57888888888899999999999999998888754 57888999
Q ss_pred HHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHH-HHHHHHHHHHhcCC
Q 005632 216 LMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD-LITEVADTLMSLGH 294 (687)
Q Consensus 216 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~ 294 (687)
-.+.|+..-|...|++++..+++ +.....+....+..-..+..++.|..+|+-++..-|.+... .+......--+-|+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998653 23344555666777778889999999999999887764333 33333333344454
Q ss_pred h---HHHHH-----HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH---------HHHHHH-H
Q 005632 295 S---NSALK-----YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID---------ARLTLA-S 356 (687)
Q Consensus 295 ~---~~A~~-----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la-~ 356 (687)
. ++++- .|+..+.. +|.+-++|+..-.+-...|+.+.-.+.|++++...|...+ .|.+.+ .
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3 33332 24444544 7888899999888888889999999999999987775322 122222 1
Q ss_pred HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhh
Q 005632 357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKV 436 (687)
Q Consensus 357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 436 (687)
.-+...+.+.+.++|+.++++-|... +.-+.++...|....++.+...|.+.+-..+-..+.
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPHkk--------FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK---------- 436 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPHKK--------FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK---------- 436 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCccc--------chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc----------
Confidence 22345788889999988888777543 234456667777777777777776555555433322
Q ss_pred hhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhh
Q 005632 437 KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE 516 (687)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (687)
T Consensus 437 -------------------------------------------------------------------------------- 436 (677)
T KOG1915|consen 437 -------------------------------------------------------------------------------- 436 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHH
Q 005632 517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCA 596 (687)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 596 (687)
..++-..+.+..+++.++.+..++++-+..+|. +...+.-.+..-...|+.+.|..++
T Consensus 437 ----------------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe------~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 437 ----------------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE------NCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred ----------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH------hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 124456677888999999999999999998887 6677777777778889999999999
Q ss_pred HHHHhhCCCC--chhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccc-----ccc----------
Q 005632 597 KYILQLHPYS--LSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFT-----MAS---------- 659 (687)
Q Consensus 597 ~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~-----~~~---------- 659 (687)
.-++.+..-+ ..+|..+...-...|. +..+.....+++.+.+.+. +++..+..-. ..+
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E----~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGE----FEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITD 569 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcch----HHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcch
Confidence 9998765433 3458888888888888 8899999999999866655 6665554433 344
Q ss_pred -chHHHHHHHHHHHhh
Q 005632 660 -HHQDAARCYLEAYKL 674 (687)
Q Consensus 660 -~~~~A~~~~~~a~~~ 674 (687)
+...|...|.+|...
T Consensus 570 ~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 570 ENIKRARKIFERANTY 585 (677)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 677899999999764
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=7.3e-16 Score=138.34 Aligned_cols=263 Identities=17% Similarity=0.103 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-----HHHHHHHHHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SALWKQLLTF 111 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 111 (687)
-|-.|..++-..+.++|+..|-.+++.+|...++.+.+|..+.+.|..+.|+...+..+. .|+. ..+...||.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 344566666677777777777777777777777777777777777777777776655544 3332 2345666777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCh
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCGQT 186 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~ 186 (687)
|+..|-++.|...|....+...--..++..+..+|....+|++|++.-++..++.+... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 77777777777777766665444556666677777777777777777776666665542 3344556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHcCCHHHHHH
Q 005632 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE-LPLKLKVKAGICYLRLGNMEKAEI 265 (687)
Q Consensus 187 ~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 265 (687)
+.|+..+.++++.+|.+.. +-..+|.++...|+|+.|++.++.+++. ++ .-..+...+..+|...|+.++.+.
T Consensus 197 d~A~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~eQ----n~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 197 DRARELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLEQ----NPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6666666666666666665 3346666666666666666666666655 33 233455556666666666666666
Q ss_pred HHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 266 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
.+.++.+..+ .+.+...++.......-.+.|..++.+-+..
T Consensus 271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 6666655544 3444444555555555555555555554443
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4.1e-15 Score=134.94 Aligned_cols=359 Identities=17% Similarity=0.128 Sum_probs=264.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 44 QYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
++...+|..|+.+++-.+..+.+. ...-..+|.|+++.|+|++|+..|.-+...+..+.+.+..+|.|++-.|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 456889999999999887655433 3567788999999999999999999998877778889999999999999999998
Q ss_pred HHHHHHHH--------------hCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 123 YYIRQAIR--------------AEP------------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 123 ~~~~~a~~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
....++-+ ++. +..+-...+|.+....-.|++|++.|.+.+..+|+.......+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 87665532 111 1122345577777778889999999999999999988888899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH-------------------------
Q 005632 177 AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH------------------------- 231 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------------- 231 (687)
+.+|.++.-++-+.+++.-.++..|+++- +.+..+...++.=+-..|....+.
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 99999999999999999999999999874 455555444443211112221111
Q ss_pred ---HHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCh-------HHHHHH
Q 005632 232 ---AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHS-------NSALKY 301 (687)
Q Consensus 232 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~ 301 (687)
+++..|+--..-+++..+++..|.++++..+|..+.+.+- | ..|.-+...|.+....|+- .-|.+.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---P-ttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---P-TTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---C-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 2222222223345778888999999999999999888763 3 2666666777777766653 334444
Q ss_pred HHHhhhcc-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcc
Q 005632 302 YHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (687)
Q Consensus 302 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (687)
|+-+-+.. ..+.......+|.+++-..++++.+.++...-...-++....+++++.....|++.+|.+.|-+.......
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 44332221 22334455677888888899999999999888888888889999999999999999999999887765543
Q ss_pred cCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632 381 DMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP 419 (687)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 419 (687)
+.. -....++++|.+.|.++-|-+.+.+
T Consensus 426 n~~-----------~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 426 NKI-----------LYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hhH-----------HHHHHHHHHHHhcCCchHHHHHHHh
Confidence 321 3456789999999999888665544
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=6.3e-16 Score=138.74 Aligned_cols=271 Identities=13% Similarity=0.124 Sum_probs=236.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASF 145 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~ 145 (687)
-+..|.-+.-.++.++|++.|..+++.+|...++...||.++.+.|..+.|+..-+..+. .|+. .-+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 355677788889999999999999999999999999999999999999999998877665 4544 3478889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHHcchH
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILMENNAY 222 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~la~~~~~~~~~ 222 (687)
|+..|-++.|...|....+...--..+...|..+|....+|++|++..++..+..+..... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999987666667889999999999999999999999999998877553 3466778888888999
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY 302 (687)
Q Consensus 223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 302 (687)
+.|...+.++++. ++....+-+.+|.++...|+++.|++.++.+++.+|.-.+++...+..+|...|+.++.+.++
T Consensus 197 d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 197 DRARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999 889999999999999999999999999999999999878889999999999999999999999
Q ss_pred HHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632 303 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 303 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (687)
.++.+. ...+.+-..++..-....-.+.|..++.+-+...|+-.
T Consensus 273 ~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 273 RRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 998865 33455566677777777778899999999999888643
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=8.9e-16 Score=155.07 Aligned_cols=312 Identities=16% Similarity=0.100 Sum_probs=168.0
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 140 (687)
+|+++.++..+|.++...|+.+.+...+.++....|.+ .+.....+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56666666666666666666666666666655554432 334445566666666666666666666666666665544
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005632 141 HLASFYVEIGDY----EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216 (687)
Q Consensus 141 ~la~~~~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~ 216 (687)
. +..+...|++ ..+...+.......|........+|.++...|++++|+..++++++..|++.. ++..+|.++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~--~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW--AVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH--HHHHHHHHH
Confidence 3 3333333332 33333333222334444555556666666666666666666666666666643 455666666
Q ss_pred HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-hhHHHH--H-HHHHHHHhc
Q 005632 217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLI--T-EVADTLMSL 292 (687)
Q Consensus 217 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~--~-~la~~~~~~ 292 (687)
...|++++|+.++++++...+.+.......+..++.++...|++++|+..+++++...+. ...... . .+...+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 666666666666666665532211222234455666666666666666666665433221 011111 0 122222333
Q ss_pred CChHHHHHH--HH-Hhhhc-cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHH
Q 005632 293 GHSNSALKY--YH-FLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED---------NIDARLTLASLLL 359 (687)
Q Consensus 293 g~~~~A~~~--~~-~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~ 359 (687)
|....+..+ +. ..... ..+.........+.++...|+.++|...++.+...... ........+.++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 322222222 11 11100 01112223335667777778888888877776553322 2345566777788
Q ss_pred HcCCHHHHHHhcCCCCcCC
Q 005632 360 EEAKEEEAITLLSPPKDLD 378 (687)
Q Consensus 360 ~~g~~~~A~~~~~~a~~~~ 378 (687)
..|++++|...+..++...
T Consensus 319 ~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 AEGNYATALELLGPVRDDL 337 (355)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 8888888888887776543
No 80
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=5.7e-16 Score=148.63 Aligned_cols=219 Identities=14% Similarity=0.126 Sum_probs=188.8
Q ss_pred hhHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 32 PGVTKMLGEA-SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 32 ~~~~~~~~~a-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
++....+..- .++...+.+++|+..+.++++.+|++..+|...+.++...| ++++++..+.+++..+|++..+|...+
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 4444444322 23456789999999999999999999999999999999998 689999999999999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---C
Q 005632 110 TFAVQKGDT--AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC---G 184 (687)
Q Consensus 110 ~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g 184 (687)
.++...|+. ++++.+++++++.+|.+..+|...+.++...|++++|++.+.++++.+|.+..+|...+.++... |
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 999888874 78899999999999999999999999999999999999999999999999999999999988776 3
Q ss_pred Ch----HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632 185 QT----ARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (687)
Q Consensus 185 ~~----~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (687)
.+ ++++.+..+++..+|++.. +|+.++.++.. .++..+|+..+.+++.. .+....++..++.++..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHHHh
Confidence 33 4788888899999999987 78899988887 35567788888887775 67777777888888765
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.76 E-value=4.8e-15 Score=149.76 Aligned_cols=311 Identities=17% Similarity=0.061 Sum_probs=232.5
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
|..+..++..|..+...|+.+.|...+.++....|.+ .+..+..+.++...|++++|...+++++..+|++..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4456778888999999999999999999998887754 4567888999999999999999999999999999877765
Q ss_pred HHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 108 LLTFAVQKGDT----AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (687)
Q Consensus 108 la~~~~~~g~~----~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 183 (687)
+..+...|++ ..+...+......+|........+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 5555555544 44444444433566777788889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHH---HHHHHHHHHcC
Q 005632 184 GQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK---VKAGICYLRLG 258 (687)
Q Consensus 184 g~~~~A~~~~~~~~~~~p~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~ 258 (687)
|++++|+..+++++...|.++.. ..+..++.++...|++++|+..+++++...+. ....... ..+...+...|
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE--SDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC--CChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999988754432 24567999999999999999999998654110 1111111 12223333444
Q ss_pred CHHHHHHH--H-HHHhhhCc-hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCC--------CcHHHHHHHHHHHHH
Q 005632 259 NMEKAEIL--F-ADLQWKNA-IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT--------DNGYLYLKLAECYLS 326 (687)
Q Consensus 259 ~~~~A~~~--~-~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~la~~~~~ 326 (687)
....+... + .......+ ..........+.++...|+.++|...++.+...... ....+....+.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333322 1 11111111 112223346788889999999999999987654222 135566788999999
Q ss_pred hhcHHHHHHHHHHHHHhc
Q 005632 327 LKERAHAIMFFYKALDRF 344 (687)
Q Consensus 327 ~g~~~~A~~~~~~al~~~ 344 (687)
.|++++|...+..++...
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999999999765
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=1.7e-15 Score=151.40 Aligned_cols=244 Identities=21% Similarity=0.249 Sum_probs=175.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 005632 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL----- 165 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 165 (687)
|.-..+...++..|...|+++.|+..+++++.. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444455667888888888888888888888876 3434444556888888888888888888888865
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632 166 ---FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS-----DAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVR 236 (687)
Q Consensus 166 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 236 (687)
+|....++.+||.+|...|++++|..++++++++... .+. ...+..++.++...+++++|..+++++++++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2233456778888888888888888888888776321 111 1246677888888888888888888887764
Q ss_pred c----cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc-------hhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632 237 F----SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-------IDHADLITEVADTLMSLGHSNSALKYYHFL 305 (687)
Q Consensus 237 ~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (687)
. ..++.-...+.++|.+|..+|++++|...+++++.... ......+..+|..+.+.+++.+|...|.++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 2 33335567777888888888888888888888766431 123456777888888888887777777765
Q ss_pred hhc------cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632 306 ETN------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 306 ~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (687)
... .+|+....+.+||.+|..+|++++|+++.++++.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 433 3455667778888888888888888888888774
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.75 E-value=2.2e-14 Score=145.59 Aligned_cols=142 Identities=17% Similarity=0.028 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (687)
...+++.++..|...|++++|++++++++.. .|..++.++..|.++...|++.+|.+.++.+-.+++.+--+-...+..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 3456788999999999999999999999987 899999999999999999999999999999999999998888889999
Q ss_pred HHHcCCHHHHHHhcCCCCcCCcccCCC--CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632 358 LLEEAKEEEAITLLSPPKDLDSLDMNS--DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (687)
Q Consensus 358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 425 (687)
+++.|+.++|.+.+......+. ++.. ...+..| .....|.+|.+.|++..|++.|..+.+..-
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~W----f~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMW----FETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999887655442 2111 1112234 667889999999999999999999987753
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=5.4e-15 Score=134.23 Aligned_cols=363 Identities=15% Similarity=0.092 Sum_probs=269.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------------CC----
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------------SP---- 99 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------~p---- 99 (687)
+-.|.+++..|+|++|+..|.-+...+.-+.+.+..++.|++-.|.|.+|.....++-+. +.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 335999999999999999999998877668899999999999999999999887765321 10
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 100 --------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (687)
Q Consensus 100 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 171 (687)
+..+-...+|.+.+..-.|++|++.|.+++..+|+....-..+|.||.++.-++-+.+.+.-.++..|+++-
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 111334567777788888999999999999999999888899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----------------------------hCCCC--CcHHHHHHHHHHHHHcch
Q 005632 172 ATKTGAQLFLKCGQTARSIGILEEYLK----------------------------VHPSD--ADLSVIDLLVAILMENNA 221 (687)
Q Consensus 172 ~~~~la~~~~~~g~~~~A~~~~~~~~~----------------------------~~p~~--~~~~~~~~la~~~~~~~~ 221 (687)
+....+...++.=.-.-|......+.+ .-|.- .-+++..+++..|.++++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 888777766654222222222222111 11211 011356688888999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------Cc-hhhHHHHHHHHHHHHhcC
Q 005632 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK-------NA-IDHADLITEVADTLMSLG 293 (687)
Q Consensus 222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~-~~~~~~~~~la~~~~~~g 293 (687)
..+|+...+.. +|..+.-+...|.++...|+--...++++-+.+- .. -+...-...++..++-..
T Consensus 301 VqeA~~L~Kdl-------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 301 VQEAISLCKDL-------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred HHHHHHHHhhc-------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 99999887654 6777777888888888888765555554443211 00 123344567788888888
Q ss_pred ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632 294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLS 372 (687)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 372 (687)
++++.+.++..+..- ..++....+++|.++...|++.+|.+.|-++-...-.+ ......|+.||...++.+-|...+-
T Consensus 374 qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 999999999887765 66777888999999999999999999998876554233 4445679999999999999999987
Q ss_pred CCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005632 373 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (687)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 421 (687)
+....... ...+..++...+..+++-=|.+.|..+-
T Consensus 453 k~~t~~e~-------------fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 453 KTNTPSER-------------FSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred hcCCchhH-------------HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 65432221 1356667777778887777766666554
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=1.5e-15 Score=151.86 Aligned_cols=243 Identities=15% Similarity=0.124 Sum_probs=154.7
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA---- 131 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---- 131 (687)
.|.-..+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4444555566777777777777777777777665 3333344445777777777777777777777663
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 132 ----EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP--------DNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 132 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
+|....++.+||.+|...|++++|..++++++++.. .-...+..++.++..++++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 233345567777777777777777777777766521 12344566677777777777777777776665
Q ss_pred C-----CCC-CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh----ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 200 H-----PSD-ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR----FSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 200 ~-----p~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 269 (687)
. +.+ ....++.++|.+|...|++++|.+++++++.+. +.........+..+|..+.+.+.+.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 222 122356677777777777777777777777664 233445556666677777777777766666665
Q ss_pred Hhh------hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 270 LQW------KNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 270 ~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
+.. .+.++....+.+|+.+|..+|++++|+++.+.++
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 1122355567777777777777777777777665
No 86
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=5.5e-15 Score=141.86 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=121.3
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
+..+++-.+-.++...+..++|+..+.+++.++|.+..+|...+.++...| ++++++..+++++..+|++..+|...+.
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 344455444555666677777777777777777777777777777777776 5677777777777777777777777777
Q ss_pred HHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc--
Q 005632 145 FYVEIGDY--EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN-- 220 (687)
Q Consensus 145 ~~~~~g~~--~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~-- 220 (687)
++...|+. ++++.++.++++.+|++..+|...+.++...|++++++..+.++++.+|.+.. +|+..+.+....+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s--AW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS--AWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh--HHHHHHHHHHhcccc
Confidence 77766653 56677777777777777777777777777777777777777777777777665 5666666655442
Q ss_pred -hH----HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632 221 -AY----EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (687)
Q Consensus 221 -~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (687)
.+ ++++.+..+++.. .|.+..+|..++.++..
T Consensus 193 ~~~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhc
Confidence 22 2344444444444 44444444444444433
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.71 E-value=2e-12 Score=131.60 Aligned_cols=305 Identities=15% Similarity=0.134 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
...++-++.++...|++++|++.+++....-++...++-..|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34566778888899999999999988888888888888999999999999999999999999999999988888888873
Q ss_pred HcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632 114 QKG-----DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK-AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (687)
Q Consensus 114 ~~g-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 187 (687)
... +.+.-...|+......|....+... ...+..-..+.. +..++...+.. .-|.....+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHh-hcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 332 4667778888887777765433222 111112223333 33334444433 34555555555555333333
Q ss_pred HHHHHHHHHHHh---C----------CCCCcH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 005632 188 RSIGILEEYLKV---H----------PSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI 252 (687)
Q Consensus 188 ~A~~~~~~~~~~---~----------p~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (687)
-...++...... . ...+.. .+++.++..|...|++++|+.++++++.. .|..+..++..|.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~Kar 236 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHH
Confidence 233333333221 0 011111 24577888888888888888888888888 7888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCC-------cHHHHHHHHHHH
Q 005632 253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTD-------NGYLYLKLAECY 324 (687)
Q Consensus 253 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~-------~~~~~~~la~~~ 324 (687)
++-..|++.+|...++.+...+.. +--+....+..+++.|+.++|...+....... +|. ..+.....|.+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777664 66666677888888888888888887665432 111 123345668888
Q ss_pred HHhhcHHHHHHHHHHHHHhcCC
Q 005632 325 LSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 325 ~~~g~~~~A~~~~~~al~~~p~ 346 (687)
.+.|++..|+..|..+.+...+
T Consensus 316 ~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776543
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.3e-13 Score=128.57 Aligned_cols=372 Identities=11% Similarity=0.032 Sum_probs=245.7
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|.+...+..+..++.+.+.|++|+...+.-..... .....+..+.|.++.+..++|+..++ ..++.+.......|.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 56677777888999999999999955444222111 11223789999999999999999998 456666778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A 189 (687)
+++++|+|++|+..|+..++.+.++.+............. ..+ . ..+.....|. +.+.+++.+.++...|+|.+|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999987766655443322211111 111 1 2333334444 568899999999999999999
Q ss_pred HHHHHHHHHhC-----CC--C-Cc-----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632 190 IGILEEYLKVH-----PS--D-AD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (687)
Q Consensus 190 ~~~~~~~~~~~-----p~--~-~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (687)
++.+++++++. .+ + .+ ..+...++.++..+|+.++|...|...+...+.+.+....+..++..+-..
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 99999995431 11 1 11 125668899999999999999999999998555554444444444333222
Q ss_pred cCCHH-HHHHHHHHHhhhCc---------hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Q 005632 257 LGNME-KAEILFADLQWKNA---------IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326 (687)
Q Consensus 257 ~~~~~-~A~~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 326 (687)
..-++ .++..++......+ .....++.+.+.+.+..+.-+.+.+.....-.. .|....--.........
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~-~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM-SPESLFPILLQEATKVR 353 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc-CchHHHHHHHHHHHHHH
Confidence 21111 12222222111111 124455667777777777777777776544433 34333222333333333
Q ss_pred hhcHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcCCCC--------cCCcccCCCCCCChhhhhHHHH
Q 005632 327 LKERAHAIMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPK--------DLDSLDMNSDKSNPWWLNEKII 397 (687)
Q Consensus 327 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~ 397 (687)
...+.+|.+.+....+.+|.+ ..+.+.++.+...+|+++.|++.+.... +.... +.+-
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~-------------P~~V 420 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL-------------PGTV 420 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC-------------hhHH
Confidence 447899999999999999988 6788889999999999999999998332 22211 1244
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 398 MKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 398 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..+...+...++.+-|...+...+.-.
T Consensus 421 ~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 421 GAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 455556667777777777666666443
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=4.2e-15 Score=140.08 Aligned_cols=190 Identities=14% Similarity=0.062 Sum_probs=153.1
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH--
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-- 103 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 103 (687)
..+..+..++..|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999876 57899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 104 -LWKQLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (687)
Q Consensus 104 -~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 174 (687)
+++.+|.++... |++++|+..+++++..+|++..++..+..+....+ . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence 688899999876 78999999999999999998765433322211100 0 012235
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.+|.++...|++.+|+..++++++..|+.+. ..++..+|.++...|++++|..+++.....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7788888888888888888888888876542 347888888888888888888888877665
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.7e-12 Score=119.57 Aligned_cols=294 Identities=18% Similarity=0.108 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC-CHHHHHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-DSALWKQLLTFAVQ 114 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 114 (687)
.....|..-+..|+|.+|.....+.-+..+....++..-+.+.-++|+++.|-.++.++-+..++ ........+.+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 45567777888888888888888877776666667777778888888888888888888887443 34556677888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HH--HHHHHH--HHHHcCChHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DA--TKTGAQ--LFLKCGQTARS 189 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~--~~~la~--~~~~~g~~~~A 189 (687)
.|+++.|.....++++..|.++.+......+|...|++......+.+..+..--+. +. +-..+. ++.+..+-..+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888888888888888888888888888888888888888877766433221 11 111111 01111111111
Q ss_pred HH---HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 190 IG---ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266 (687)
Q Consensus 190 ~~---~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 266 (687)
.. +.+..-..-..++. +...++.-+...|+.++|.+..+.+++. .-+.. +... .-....+++..=++.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~--l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~~D~~-L~~~--~~~l~~~d~~~l~k~ 316 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPE--LVVAYAERLIRLGDHDEAQEIIEDALKR----QWDPR-LCRL--IPRLRPGDPEPLIKA 316 (400)
T ss_pred hHHHHHHHhccHHhhcChh--HHHHHHHHHHHcCChHHHHHHHHHHHHh----ccChh-HHHH--HhhcCCCCchHHHHH
Confidence 11 12111111111222 3345555556666666666666666554 11111 1111 112233444444444
Q ss_pred HHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632 267 FADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (687)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (687)
.++.+...|. ++..+..+|..+++.+.|.+|..+|+.+++. ..+...+..+|.++.+.|+..+|.+.+++++
T Consensus 317 ~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4444444442 4455555555555555555555555544432 3334444445555555555555555555544
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=6.3e-15 Score=125.10 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=99.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 54 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133 (687)
Q Consensus 54 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 133 (687)
..+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677777777754 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
+++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888777777766543
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=3.3e-14 Score=133.93 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=157.6
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS--- 137 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--- 137 (687)
++..+..++.+|..++..|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345678999999999999999999999999999998875 57889999999999999999999999999998765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632 138 LRIHLASFYVEI--------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209 (687)
Q Consensus 138 ~~~~la~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 209 (687)
+++.+|.++... |++++|++.|++++..+|++..+...+..+.... .. . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~---~------------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR---L------------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH---H------------HHHH
Confidence 688889998876 7899999999999999998876654333221111 00 0 0123
Q ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
..+|.++...|++.+|+..+++++..++ +.+....+++.+|.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYP-DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4788999999999999999999999844 2466789999999999999999999999998877655
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=3e-12 Score=119.30 Aligned_cols=299 Identities=16% Similarity=0.119 Sum_probs=233.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK-DISLRIHLASFYVEI 149 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~ 149 (687)
...-|..-+..|+|.+|.....+.-+..+...-.+..-+...-+.|+++.|-.++.++-+..++ ...+....+.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444666677899999999999988887777777888899999999999999999999998444 356788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHH--HHHHcchHHHHH
Q 005632 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVA--ILMENNAYEKTL 226 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~--~~~~~~~~~~A~ 226 (687)
|+++.|.....++.+..|.++.+......+|...|++.+...++.++-+..--+.. ..-+...+. ++.+.++-..+.
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999988776433221 111111111 112222222222
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
. +....+..|..-..++.+...++.-+...|+.++|....++.++..- ++.....++ ...-+++..=++..++.+
T Consensus 247 g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~~~~~--~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 G-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLCRLIP--RLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred H-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHHHHHh--hcCCCCchHHHHHHHHHH
Confidence 2 22222222322445677788889999999999999999999988754 333222222 346678888888888888
Q ss_pred hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
.. +|++|.++..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+..+.++.
T Consensus 322 ~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77 8999999999999999999999999999999999886 56678899999999999999999887663
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=2.5e-10 Score=112.51 Aligned_cols=162 Identities=15% Similarity=0.051 Sum_probs=93.2
Q ss_pred HcchHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc---hhhHHHHHHHHHHHHhc
Q 005632 218 ENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA---IDHADLITEVADTLMSL 292 (687)
Q Consensus 218 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~ 292 (687)
..|+..+-+..|..++....+. ......+|..+|..|...|+.+.|..+|+++....- .+-..+|...|..-...
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 3455555555555555543211 122345566666666666666666666666654321 12345566666666666
Q ss_pred CChHHHHHHHHHhhhccCC-----------------CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632 293 GHSNSALKYYHFLETNAGT-----------------DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (687)
Q Consensus 293 g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (687)
.+++.|+.+++.+...+.+ ....+|..++......|-++.....|++++++.--.|.+..+.|
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666666666665533111 02334555666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHhcCCCCcCCc
Q 005632 356 SLLLEEAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~ 379 (687)
..+....-++++.+.|++-+.+++
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCC
Confidence 666666666666666666666555
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.2e-12 Score=116.47 Aligned_cols=355 Identities=15% Similarity=0.040 Sum_probs=235.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632 44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123 (687)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 123 (687)
+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|-++|++.-.+.|......+..+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 124 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
....+.....-.......-+.+....+++..+....++.-. .++.+...+.|.+.++.|+++.|++-|+.+++...-.
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 77766543111233444556666677777777665554321 1456777788888888888888888888888877666
Q ss_pred CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHH
Q 005632 204 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLIT 283 (687)
Q Consensus 204 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (687)
+. +-++++.++++.|+++.|+++....++.--.++|....-...-|.--...|+. +....+.-.+++.
T Consensus 178 pl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt----------~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 178 PL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT----------LVLHQSALVEAFN 245 (459)
T ss_pred ch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch----------HHHHHHHHHHHhh
Confidence 64 56678888888888888888887777652222221110000000000000110 0011112455677
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcc-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 005632 284 EVADTLMSLGHSNSALKYYHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA 362 (687)
Q Consensus 284 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 362 (687)
..+-++++.|+++.|.+.+..+-... ..-+|..+.+++..- ..+++.+...-++-.+.++|--++..-++-.++++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 77888999999999998885443221 223677777776543 3467778888888889999977888889999999998
Q ss_pred CHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHh
Q 005632 363 KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYR-AKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 363 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~ 424 (687)
-++-|..++-.--...-. +.. +.++.+-..+. .+-..++|.+-+..+-+..
T Consensus 325 yf~lAADvLAEn~~lTyk----------~L~-~Yly~LLdaLIt~qT~pEea~KKL~~La~~l 376 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYK----------FLT-PYLYDLLDALITCQTAPEEAFKKLDGLAGML 376 (459)
T ss_pred HHhHHHHHHhhCcchhHH----------Hhh-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 899988887643222111 111 23444444433 4456666766665555443
No 96
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=5e-11 Score=117.24 Aligned_cols=543 Identities=13% Similarity=0.101 Sum_probs=330.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH--c------CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSA--L------GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
.+-.-+|+++++.-|.+...|+..-..-.. . ..|..--.+|++++-.-.+-+..|......+..+|+...-.
T Consensus 43 k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 43 KQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHH
Confidence 344456777777777776666554322211 1 12344445555555544455666777777777777777777
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Q 005632 123 YYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV- 199 (687)
Q Consensus 123 ~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 199 (687)
..|.+++..-|- +..+|-..-......|-++-++..|++.++..|... ......+...+++++|.+.+..++..
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCch
Confidence 777777765552 223444444455556666677777777777666542 23334455566666666655554432
Q ss_pred -------------------------------------------CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632 200 -------------------------------------------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR 236 (687)
Q Consensus 200 -------------------------------------------~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 236 (687)
.++... ..|..||..|.+.|.+++|...|++++...
T Consensus 200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g-~Lw~SLAdYYIr~g~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG-FLWCSLADYYIRSGLFEKARDVYEEAIQTV 278 (835)
T ss_pred hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 222222 467888999999999999999999988773
Q ss_pred ccCCCchHH-----HHHHHHHHHHHcC-------------CHHHHHHHHHHHhhhCch-----------hhHHHHHHHHH
Q 005632 237 FSGKELPLK-----LKVKAGICYLRLG-------------NMEKAEILFADLQWKNAI-----------DHADLITEVAD 287 (687)
Q Consensus 237 ~~~~~~~~~-----~~~~l~~~~~~~~-------------~~~~A~~~~~~~~~~~~~-----------~~~~~~~~la~ 287 (687)
-. -.+... +.+.-..+..+++ +.+-....|+.++...|- .+..-|.. .
T Consensus 279 ~t-vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--R 355 (835)
T KOG2047|consen 279 MT-VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--R 355 (835)
T ss_pred ee-hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--h
Confidence 21 111111 1111111111111 223334444444333221 13333333 3
Q ss_pred HHHhcCChHHHHHHHHHhhhccCCC-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 005632 288 TLMSLGHSNSALKYYHFLETNAGTD-----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN----IDARLTLASLL 358 (687)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 358 (687)
+-+..|+..+-+..|..++..-+|. -..+|..+|..|...|+.+.|...|+++.+..-.. ..+|...|..-
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 4456788889999999988764443 34689999999999999999999999999874322 67889999999
Q ss_pred HHcCCHHHHHHhcCCCCcCCcccC--C---CCCC-ChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhh
Q 005632 359 LEEAKEEEAITLLSPPKDLDSLDM--N---SDKS-NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQ 432 (687)
Q Consensus 359 ~~~g~~~~A~~~~~~a~~~~~~~~--~---~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 432 (687)
++..+++.|.++++.+........ . ..+. ........++...+......|-++.....|.+++..-+-....
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-- 513 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-- 513 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--
Confidence 999999999999998875432211 0 0111 1123445677888888888888888888888888654321110
Q ss_pred hhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCch
Q 005632 433 KVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDE 512 (687)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (687)
..+ ....++....+ |.....-.+|+.
T Consensus 514 ------------i~N----------------------yAmfLEeh~yf-----------eesFk~YErgI~--------- 539 (835)
T KOG2047|consen 514 ------------IIN----------------------YAMFLEEHKYF-----------EESFKAYERGIS--------- 539 (835)
T ss_pred ------------HHH----------------------HHHHHHhhHHH-----------HHHHHHHHcCCc---------
Confidence 111 11111111100 001111122332
Q ss_pred hhhhhccCCCCCcccCcchhhHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCC
Q 005632 513 SQQEAFREPPLPNLLKNEENQCLIIDLCKA---LASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDP 589 (687)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 589 (687)
+.+.|..+++....-.. -......+.|..++++++...|. ++...+..+.+..--..|-.
T Consensus 540 -------------LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp----~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 540 -------------LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP----EHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred -------------cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhhHH
Confidence 44577777766644332 23344689999999999986553 55666666666666667999
Q ss_pred cchhHHHHHHHhhCCCC--chhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCc--cceeccccccccchHHHH
Q 005632 590 NHGFDCAKYILQLHPYS--LSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPP--IIISGHQFTMASHHQDAA 665 (687)
Q Consensus 590 ~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~~g~~~~~~~~~~~A~ 665 (687)
..|+..++.+-..-+.. .++|+++..-....=. .......++++.+.-|++-.- .+-.+..-...|..+.|.
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yG----v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG----VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC----CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 99999998877654433 2445555443333322 367788889998888887543 345666667789999999
Q ss_pred HHHHHHHhhCCC
Q 005632 666 RCYLEAYKLLPE 677 (687)
Q Consensus 666 ~~~~~a~~~~P~ 677 (687)
..|..+-+++|-
T Consensus 679 aIya~~sq~~dP 690 (835)
T KOG2047|consen 679 AIYAHGSQICDP 690 (835)
T ss_pred HHHHhhhhcCCC
Confidence 999999887764
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=3.6e-14 Score=120.50 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=114.1
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 88 FDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (687)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 167 (687)
..+|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999875 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 005632 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217 (687)
Q Consensus 168 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~ 217 (687)
+++.+++.+|.++...|++++|+..|++++...|+++. .+..++.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~--~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS--WSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999987 4556665544
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=1.6e-13 Score=123.08 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=127.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
-+-.|+..|+++......+... +|.. -+...++.++++..+++++..+|++...|..+|.++...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 4667888899888655543221 2211 1112677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 120 QAMYYIRQAIRAEPKDISLRIHLASFY-VEIGD--YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 120 ~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
+|+..|++++.++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|..+...|++++|+..++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999874 67677 589999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCc
Q 005632 197 LKVHPSDAD 205 (687)
Q Consensus 197 ~~~~p~~~~ 205 (687)
++..|.+.+
T Consensus 171 L~l~~~~~~ 179 (198)
T PRK10370 171 LDLNSPRVN 179 (198)
T ss_pred HhhCCCCcc
Confidence 998887765
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=5.6e-13 Score=117.59 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI 129 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 129 (687)
...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666777788999888 8899999999999999999999888889998888889999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632 130 RAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209 (687)
Q Consensus 130 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 209 (687)
...|++.++|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+.. +.
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v~ 205 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--VR 205 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887776664 67
Q ss_pred HHHHHHHHHcchHHHHHHHHHHHH
Q 005632 210 DLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
.+++.+....|++++|.....+-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 789999999999999887765543
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.6e-12 Score=114.26 Aligned_cols=368 Identities=11% Similarity=0.013 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+...+-..|.+|+...+|..|..+|++.-...|......+..+..++..+.+.+|+...........-.......-+.+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55556677999999999999999999999999999999999999999999999999998877654222233444456777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
+..+++..+....++.-. .++.+...+.|.+.++.|+++.|++-|+.+++...-++-.-++++.++++.|+++.|+++
T Consensus 123 Yse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred cccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 788888888777766432 256778899999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHh----CCCCC--------c---------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHH
Q 005632 193 LEEYLKV----HPSDA--------D---------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 245 (687)
Q Consensus 193 ~~~~~~~----~p~~~--------~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 245 (687)
...+++. +|+-. + ..+++..+.++++.|+++.|.+.+...--. .....++.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR--aE~elDPv 278 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR--AEEELDPV 278 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc--ccccCCch
Confidence 8888765 33211 0 145666778888999999887766543211 01223344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHH-H
Q 005632 246 LKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAEC-Y 324 (687)
Q Consensus 246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~ 324 (687)
.+.+++..- ..+++.+...-+.-++..+|- .++.+.++-.+|.+..-|+-|.+.+.+-......--....+.+-.. -
T Consensus 279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLI 356 (459)
T KOG4340|consen 279 TLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALI 356 (459)
T ss_pred hhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHH
Confidence 455555432 245677777777777777773 6778888888899988888888877322111000011122222222 2
Q ss_pred HHhhcHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHH--cCC---HHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHH
Q 005632 325 LSLKERAHAIMFFYKALDRFEDNIDARLTL-ASLLLE--EAK---EEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIM 398 (687)
Q Consensus 325 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~--~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 398 (687)
...-..++|.+-+...-..-.+ -+..+ +.+... .++ ...|++.|+..++..- .+.+
T Consensus 357 t~qT~pEea~KKL~~La~~l~~---kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---------------PVlM 418 (459)
T KOG4340|consen 357 TCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---------------PVLM 418 (459)
T ss_pred hCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 2333456665555443322111 11111 111111 111 2234444444444322 3788
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 399 KLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 399 ~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..+++|+...++..+.+.|..-++-.
T Consensus 419 a~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 419 AQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHhhccccccHHHHHHHHHHHhhh
Confidence 99999999999999988777766543
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=1.7e-11 Score=140.10 Aligned_cols=385 Identities=12% Similarity=0.011 Sum_probs=272.9
Q ss_pred hHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc-cCCCCHHHHHHHHH
Q 005632 33 GVTKML-GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH-LSPKDSALWKQLLT 110 (687)
Q Consensus 33 ~~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~ 110 (687)
....+. ..|..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+-. ....++......+.
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 333443 3366677899999988766554111 11233455667778888998887777655411 11233445567788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPK---------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTG 176 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l 176 (687)
++...|++++|...+..+....+. .......++.++...|++++|...+++++...+... .+...+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 889999999999999988764321 123455678888999999999999999998655432 345678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC----CchHHHHH
Q 005632 177 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK----ELPLKLKV 248 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~ 248 (687)
|.++...|++++|...+.+++........ ..++..++.++...|++++|...+++++....... +....++.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 88999999999999999999876443221 23566789999999999999999999988743211 22234456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhC----chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCC-cHHHH----H
Q 005632 249 KAGICYLRLGNMEKAEILFADLQWKN----AIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTD-NGYLY----L 318 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~----~ 318 (687)
.+|.++...|++++|...+.+++... +......+..++.++...|++++|...+.++.... ... ..... .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 78889999999999999999876532 22245566778999999999999999999886541 111 11111 1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhH
Q 005632 319 KLAECYLSLKERAHAIMFFYKALDRFEDNI----DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNE 394 (687)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (687)
.....+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++........ .....
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~------~~~~a 731 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL------MSDLN 731 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc------hHHHH
Confidence 122445567899999999877655332222 12467899999999999999999988875432211 11234
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 395 KIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 395 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
.++..+|.++...|+.++|.+.+.+.++..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 688899999999999999999999998765
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.55 E-value=2.7e-13 Score=125.80 Aligned_cols=320 Identities=16% Similarity=0.123 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCCCH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPKDS 102 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~ 102 (687)
+...+-..|.-+++.|++...+.+|+.+++...++. .+|..+|.+|+..++|++|+++...=+.+ .-...
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 355666779999999999999999999999877653 46788999999999999999876543322 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
..--+||..+-..|.|++|+.+..+-+.+.. ....+++++|.+|...|+.-.-..-= +....+.++.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~--- 168 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVT--- 168 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh----hcccccHHHH---
Confidence 4456788888899999999988887665432 22467888999888877521100000 0000000000
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc--cCCCchHHHHHHH
Q 005632 177 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPLKLKVKA 250 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l 250 (687)
..++.|.++|..-+++.....+ -.++-++|..|+-.|+|+.|+..-+.-+.+.. .+......++.++
T Consensus 169 -------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl 241 (639)
T KOG1130|consen 169 -------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL 241 (639)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence 0112223333322222111100 12445566666666666666655554444311 1111223455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhh-----CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-----CCCcHHHHHHH
Q 005632 251 GICYLRLGNMEKAEILFADLQWK-----NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKL 320 (687)
Q Consensus 251 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l 320 (687)
|.++.-.|+++.|+++|+..+.. +........+.+|..|.-..++++|+.++++-+.+. ......+++.+
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666666666666666654321 112245556777777777778888888777644331 23456777888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhc-----CC-CHHHHHHHHHHHHHcCCHHH
Q 005632 321 AECYLSLKERAHAIMFFYKALDRF-----ED-NIDARLTLASLLLEEAKEEE 366 (687)
Q Consensus 321 a~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~ 366 (687)
|..+...|..++|+.+.++.+++. |. ...+..++...-...|..+.
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 888888888888888877776652 21 23456667777777775443
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=3e-13 Score=121.31 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA-VQKGD--TAQAMY 123 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 123 (687)
.++.++++..+++++..+|++++.|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 124 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
.++++++.+|+++.+++.+|..+...|++++|+..++++++..|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999998876543
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=2.5e-12 Score=113.53 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 163 (687)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 344666677777889999999 9999999999999999999999999999999999889999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCch
Q 005632 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP 243 (687)
Q Consensus 164 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 243 (687)
...|++..++..+|.+|.+.|++++|...|.+++++.|.++. +..++|..+.-.|+++.|..++..+... .+.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLS----PAAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCc
Confidence 999999999999999999999999999999999999999886 7889999999999999999999999887 6777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 244 LKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
..+..+++.+....|++++|..+..+-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8888899999999999999988777643
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.52 E-value=3.9e-10 Score=129.00 Aligned_cols=346 Identities=11% Similarity=-0.026 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR-AEPKDISLRIHLASFYVE 148 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~ 148 (687)
.+...+..+...|++.+|...+..+-.. +.-.......+......|++..+..++..+-. ....++......+.++..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 4455566677788888888766554221 11123344556777788888887777655411 112344456677888899
Q ss_pred cCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPD---------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVIDLLVAIL 216 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~la~~~ 216 (687)
.|++++|...+..+....+. .......++.++...|++++|...+++++...+.... ..+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 99999999999988765322 1234556788889999999999999999986554332 12456788899
Q ss_pred HHcchHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-------hhHHHHHHHHH
Q 005632 217 MENNAYEKTLQHIEHAQIVRFSGKE--LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-------DHADLITEVAD 287 (687)
Q Consensus 217 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~la~ 287 (687)
...|++++|...+.+++........ ........++.++...|++++|...+++++..... .....+..+|.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 9999999999999999876432222 22356677899999999999999999987653211 12234567788
Q ss_pred HHHhcCChHHHHHHHHHhhhccC----CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---HHHHH----HHHH
Q 005632 288 TLMSLGHSNSALKYYHFLETNAG----TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN---IDARL----TLAS 356 (687)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~ 356 (687)
++...|++++|...+.+++.... ......+..+|.++...|++++|...+.++..+.+.. ..... ....
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 99999999999999998765411 1235566778999999999999999999998764322 11111 1224
Q ss_pred HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
.+...|+.+.|...+.......+.. . |........++.++...|++++|...+.+++...
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~-------~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFAN-------N-HFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCcc-------c-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4556899999999987765432211 1 1122346789999999999999999888887653
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=4.6e-12 Score=134.54 Aligned_cols=269 Identities=10% Similarity=-0.023 Sum_probs=153.8
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 108 (687)
-.|.....+...+..+...|++++|+..++..++.+|+....++.+|.++++.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 34556777788888888999999999999999999999999999999999999987776655 5554444332
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
++ .+++++...+...+++..+++.+|.||-.+|+.++|...|+++++.+|+++.++.++|..|... +.++
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22 3334444444444555555666666666666666666666666666666666666666666555 6666
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC----------------CCchHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG----------------KELPLKLKVKAGI 252 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~ 252 (687)
|+.++.+++.. +...++|.++.++..+.+...+.+ .......+.-+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 66665555443 222233344444444443330000 1111222333444
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHH
Q 005632 253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH 332 (687)
Q Consensus 253 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 332 (687)
+|...+++++++.+++.+++.+|. +..+...++.+|. +.|.. -..++..+.. ..+--....+..
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~------------s~l~~~~~~~~~ 295 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKM------------SDIGNNRKPVKD 295 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHH------------hccccCCccHHH
Confidence 555566666666666666666554 5555555555554 22221 2222222211 011111134566
Q ss_pred HHHHHHHHHHhcCCC
Q 005632 333 AIMFFYKALDRFEDN 347 (687)
Q Consensus 333 A~~~~~~al~~~p~~ 347 (687)
|+..|++.+..+|++
T Consensus 296 ~i~~fek~i~f~~G~ 310 (906)
T PRK14720 296 CIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHHeeecCCC
Confidence 777777777777665
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=6.5e-12 Score=133.44 Aligned_cols=242 Identities=16% Similarity=0.106 Sum_probs=176.3
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
.+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 46888899999999999999999999999999999999999999999999888886666554 4444333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~ 222 (687)
...++ .+++++...+...+.+..+++.+|.+|-++|+.++|...++++++.+|+++. +++++|..|... +.
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~--aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE--IVKKLATSYEEE-DK 165 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHh-hH
Confidence 33344 5566666666667888889999999999999999999999999999999986 899999999999 99
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY 302 (687)
Q Consensus 223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 302 (687)
++|+.++.+++.. +...+++..+..++.+++...|. +.+.+..+-
T Consensus 166 ~KA~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 166 EKAITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred HHHHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 9999999999977 55566778888888887776664 333322211
Q ss_pred HHhhhc-cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005632 303 HFLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 359 (687)
Q Consensus 303 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (687)
+++... ........+.-+-.+|...++|++++.+++.+++.+|.|..++..++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 111111 011122333444455555566666666666666666666555555555554
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.9e-11 Score=106.64 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=156.2
Q ss_pred cCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 47 YGNFEQAISLLKEVVRLS------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
..+.++-+++...++... |+...++-....+....|+.+-|..++.+.....|++......-|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 345566666666655432 33344555666777778888888888888888888888888888888888899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|+++|+..++.+|.+...+-....+...+|+.-+|++.+...++..+.+.++|..++.+|+..|+|++|.-++++++-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999988888888888888888888888899999988888889899999999999999999999999999988888
Q ss_pred CCCCcHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 005632 201 PSDADLSVIDLLVAILMENN---AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI 252 (687)
Q Consensus 201 p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (687)
|.++. .+..+|.+++-.| ++.-|.++|.+++++ .+.+...++.+-.
T Consensus 185 P~n~l--~f~rlae~~Yt~gg~eN~~~arkyy~~alkl----~~~~~ral~GI~l 233 (289)
T KOG3060|consen 185 PFNPL--YFQRLAEVLYTQGGAENLELARKYYERALKL----NPKNLRALFGIYL 233 (289)
T ss_pred CCcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----ChHhHHHHHHHHH
Confidence 88875 4667788777665 566788888888888 5555555444433
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.6e-11 Score=107.22 Aligned_cols=176 Identities=20% Similarity=0.218 Sum_probs=161.4
Q ss_pred CCChhHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 29 KLSPGVTKMLGE-ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 29 ~~~~~~~~~~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
.+.++.-.++.+ ..+.+..|+.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+...+-.
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 355666666654 5667889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG--- 184 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--- 184 (687)
.-.+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++=+.|.++-.+..+|.+++-+|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ChHHHHHHHHHHHHhCCCCC
Q 005632 185 QTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~ 204 (687)
++.-|.++|.++++++|.+.
T Consensus 206 N~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHhChHhH
Confidence 46789999999999999654
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=1.5e-12 Score=110.78 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 135 (687)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 135 (687)
.|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555556666555566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (687)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 171 (687)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666555543
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=1.6e-11 Score=129.91 Aligned_cols=138 Identities=15% Similarity=0.095 Sum_probs=80.9
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
..|.++++++.+|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5555555555555555555555555555555555555555555555555555555554
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=7.1e-12 Score=132.56 Aligned_cols=147 Identities=10% Similarity=-0.032 Sum_probs=137.5
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 91 YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 91 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
........|.+++++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 33344557889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG 239 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 239 (687)
.+++.+|.++...|++++|+..|++++..+|++.. ++..+|.++...|+.++|...|++++...++.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999998887775 78999999999999999999999999985533
No 113
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-12 Score=121.49 Aligned_cols=289 Identities=14% Similarity=0.134 Sum_probs=206.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHL 142 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l 142 (687)
.-|.-+++.|+....+.+|+.+++...++. .+|..||..|+.+++|++|+++-..=+.+ .-......-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 346778899999999999999998876654 45778899999999999999876543322 11233456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPD------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~ 216 (687)
|.++-..|.|++|+.++.+-+.+... ...+++++|.+|...|+.-.-. .|.+.. ....
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pee~g--~f~~----- 165 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APEEKG--AFNA----- 165 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chhhcc--cccH-----
Confidence 89999999999999988887765322 3467888999988887643211 121111 0000
Q ss_pred HHcchHHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc-----hhhHHHHHHHHHHH
Q 005632 217 MENNAYEKTLQHIEHAQIVRFS--GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-----IDHADLITEVADTL 289 (687)
Q Consensus 217 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~ 289 (687)
.-...++.|.++|..-+++... +......++-++|..|+-+|+|+.|+..-+.-+.... .....++.++|.++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 0112345566666655554211 1122345677889999999999999988776433211 12456788999999
Q ss_pred HhcCChHHHHHHHHHhhhc----c-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 005632 290 MSLGHSNSALKYYHFLETN----A-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLL 358 (687)
Q Consensus 290 ~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~ 358 (687)
.-.|+++.|+++|+..+.. . ....+...+.+|..|.-..++++|+.++.+-+.+.. ....+.+.||..+
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999975543 1 234677889999999999999999999998877643 3467889999999
Q ss_pred HHcCCHHHHHHhcCCCCcC
Q 005632 359 LEEAKEEEAITLLSPPKDL 377 (687)
Q Consensus 359 ~~~g~~~~A~~~~~~a~~~ 377 (687)
...|..++|+.+.+..++.
T Consensus 326 ~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRS 344 (639)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 9999999999988866554
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=5.2e-12 Score=107.39 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=110.7
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
..+++++..+|++......+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 169 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 169 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999998875
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.5e-12 Score=115.73 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..+-.+|..++..++|.+|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44455667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 153 (687)
.+|++++|++.|+++++++|++..+...|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777777766666655555544433
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=9.6e-12 Score=124.42 Aligned_cols=226 Identities=14% Similarity=0.109 Sum_probs=177.1
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH
Q 005632 27 KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (687)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 106 (687)
...+||-..--...|..++..|-...|+.+|++. ..|-....||...|+..+|.....+-++ .|+++..|.
T Consensus 391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence 3556776666667788888888888888888764 5666677888888888888888888887 666677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005632 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 186 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 186 (687)
.+|++.....-|++|.++.+.. +..+...+|......++|.++...++..++++|-....|+.+|.+..+.+++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 7777766655555555555443 3345666777777788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266 (687)
Q Consensus 187 ~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 266 (687)
..|...|..++...|++.. +|++++..|...++-.+|...++++++. +..++.+|.+.-.+....|.+++|+..
T Consensus 536 q~av~aF~rcvtL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHHHHhhcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHH
Confidence 8888888888888888876 7888888888888888888888888887 666777777777788888888888888
Q ss_pred HHHHhhh
Q 005632 267 FADLQWK 273 (687)
Q Consensus 267 ~~~~~~~ 273 (687)
+.+.+..
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8887543
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=2.2e-10 Score=110.12 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
|....+++..+..++..|++++|+..++..+...|+++..+...+.+++..|+..+|.+.+++++..+|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67778888888888889999999999988888888888888888999999999999999999999988888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~ 224 (687)
++...|++.+|+..++..+..+|+++..|..|+..|..+|+..++.. ..+..+...|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-------------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-------------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-------------------HHHHHHHhCCCHHH
Confidence 99999999999999998888888888889888888888887766543 45566777788888
Q ss_pred HHHHHHHHHHHh
Q 005632 225 TLQHIEHAQIVR 236 (687)
Q Consensus 225 A~~~~~~~~~~~ 236 (687)
|+..+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 888888887774
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=2.2e-11 Score=100.44 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
++.-+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 005632 145 FYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
+++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=1.8e-11 Score=100.99 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+.....++..|..++..|++++|...|+-+...+|.++..|+.||.++..+|++.+|+..|.+++.++|+++..++.+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34455555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAE 132 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~ 132 (687)
|++..|+.+.|...|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666665544
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=3.3e-12 Score=121.28 Aligned_cols=160 Identities=23% Similarity=0.185 Sum_probs=83.5
Q ss_pred HHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632 211 LLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (687)
Q Consensus 211 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (687)
..|.++...|++++|++.+.+. ...+.......++...++++.|...++.+...+. +..-.....+++.+
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e-D~~l~qLa~awv~l 176 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE-DSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 3444555555555555544331 2233344445555556666666665555544332 23333333333333
Q ss_pred hcC--ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHH
Q 005632 291 SLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKE-EEA 367 (687)
Q Consensus 291 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A 367 (687)
..| .+.+|.-+|+++... .+..+.++..++.++..+|++++|...+++++..+|++++++.+++.+....|+. +.+
T Consensus 177 ~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 333 466666666665543 4455666666666666666666666666666666666666666666666666665 445
Q ss_pred HHhcCCCCcCCccc
Q 005632 368 ITLLSPPKDLDSLD 381 (687)
Q Consensus 368 ~~~~~~a~~~~~~~ 381 (687)
.+++.++....|..
T Consensus 256 ~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 256 ERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhCCCC
Confidence 55666555555544
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=3.7e-10 Score=113.34 Aligned_cols=295 Identities=18% Similarity=0.151 Sum_probs=227.8
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
|........++..+...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|+++..|..+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334556788999999999999999999874 5688889999999999999999999988 7778888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~ 224 (687)
+.....-|++|.++.+.. +..+...+|......++|.++.+.++..++++|-... .|+.+|.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhccHHHHHHhhhHH
Confidence 887777677777766553 3457778888888899999999999999999999886 89999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304 (687)
Q Consensus 225 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (687)
|.+.|..++.. .|.....|.+++..|.+.++-.+|...++++++-+. .+..+|.+...+....|.+++|++.+.+
T Consensus 538 av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 538 AVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999998774 5899999999999999999999999999
Q ss_pred hhhcc-CCCcHHHHHHHHHHHHHh-----hcHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHH-----HHcCCHHHHH
Q 005632 305 LETNA-GTDNGYLYLKLAECYLSL-----KERAHAIM-----FFYKALDRFEDNIDARLTLASLL-----LEEAKEEEAI 368 (687)
Q Consensus 305 ~~~~~-~~~~~~~~~~la~~~~~~-----g~~~~A~~-----~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~ 368 (687)
..... ...++.....+....... ++-..+.. .+-+.+..--+.+..+...+..+ .+.+..++|.
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~ 692 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAY 692 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHH
Confidence 87652 122344433333322221 22222222 22233333334566665555422 1234455666
Q ss_pred HhcCCCCcCCccc
Q 005632 369 TLLSPPKDLDSLD 381 (687)
Q Consensus 369 ~~~~~a~~~~~~~ 381 (687)
+..++........
T Consensus 693 ~~l~k~~~~~s~~ 705 (777)
T KOG1128|consen 693 RALSKAYKCDTGS 705 (777)
T ss_pred hhhhhCccccccc
Confidence 6666655554433
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=1.4e-11 Score=117.04 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhCchhhHHHHHHHHH
Q 005632 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG--NMEKAEILFADLQWKNAIDHADLITEVAD 287 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 287 (687)
.....++...++++.|.+.++.+.+. +++...+....+++.+..| .+.+|..+|+++....+. .+..+..++.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-t~~~lng~A~ 209 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQI----DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-TPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC-CHHHHHHHHH
Confidence 34444555555555555555444433 3333333334444444433 355566666665444332 5555666666
Q ss_pred HHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhcCCCH
Q 005632 288 TLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER-AHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~ 348 (687)
++...|++++|...+++++.. +|.++.++.+++.+....|+. +.+.+++.++...+|+++
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 666666666666666666554 566666666666666666665 445555555555666554
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.9e-11 Score=110.15 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+-.-|.-++..++|.+|+..|.+|+.++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..+|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 33344444455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
++.+|++.|+++++++|++.....+|..+-..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 55555555555555555555444444433333
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=9.7e-10 Score=105.80 Aligned_cols=153 Identities=22% Similarity=0.190 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788888999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632 179 LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (687)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (687)
.+.+.|++.+|+..++..+..+|+++. .|..++..|..+|+..++.... ++.+...|
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~~A~---------------------AE~~~~~G 439 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALLAR---------------------AEGYALAG 439 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHhCchHHHHHHH---------------------HHHHHhCC
Confidence 999999999999999999999999887 6888999998888877765544 34455578
Q ss_pred CHHHHHHHHHHHhhhC
Q 005632 259 NMEKAEILFADLQWKN 274 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~ 274 (687)
++++|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 8888888888776554
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=6.3e-11 Score=117.21 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
|++++|+..|++++.++|+++.+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888877777666654443
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.30 E-value=8.4e-10 Score=102.38 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET---YNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALW 105 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 105 (687)
.+....+..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 466667888888888888888888888888888876544 4788888888888888888888888887765 3556
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 106 KQLLTFAVQKG---------------D---TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (687)
Q Consensus 106 ~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 167 (687)
+.+|.++...+ + ..+|+..|++.++..|++.-+ .+|...+..+-.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 77776654433 1 245667777777777766431 111111111100
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHA 232 (687)
Q Consensus 168 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~ 232 (687)
.-..--+..|..|.+.|.+..|+.-++.+++..|+.+.. .++..++..|...|..++|..+....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011223366777888888888888888888887776542 46777888888888888887766543
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.25 E-value=7.6e-10 Score=100.42 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK 106 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 106 (687)
+...++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 56778899999999999999999999999988763 56889999999999999999999999999888754 5677
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 107 QLLTFAVQKG-----------DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (687)
Q Consensus 107 ~la~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 175 (687)
.+|.+++... ...+|+..|+..+...|++..+- +|...+..+-. .-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 7777765542 23466666777776666654221 11111100000 00112234
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcchHHHH
Q 005632 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A 225 (687)
+|..|.+.|.+..|+..++.+++..|+.... .++..++..+...|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 5666777777777777777777776665432 3556666777777766643
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5.2e-07 Score=92.02 Aligned_cols=331 Identities=15% Similarity=0.171 Sum_probs=199.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
-|......|..++|..+|.+.-. +-.+-..|...|.+++|.+..+.--.+ .-...|+..|.-+...++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHH
Confidence 36667788888888888887643 334556677788888887765432111 12345778888888888888
Q ss_pred HHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 120 QAMYYIRQA----------IRAEP----------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 120 ~A~~~~~~a----------~~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
.|+++|+++ +..+| .++..|...|..+...|+.+.|+.+|..+- -|+.+.++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI 947 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRI 947 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheee
Confidence 888888875 22233 234456667777777788888887777653 25566667
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc-----cCCCchHHHHHHHHHHH
Q 005632 180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF-----SGKELPLKLKVKAGICY 254 (687)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~ 254 (687)
..-+|+.++|-.+.++. .+. .+.+.+|..|...|++.+|+.+|.++..... ..+.... .+..+.
T Consensus 948 ~C~qGk~~kAa~iA~es-----gd~--AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d----~L~nla 1016 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES-----GDK--AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD----RLANLA 1016 (1416)
T ss_pred EeeccCchHHHHHHHhc-----ccH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----HHHHHH
Confidence 77777777776665542 222 2678899999999999999988887654310 0011111 111111
Q ss_pred HHc--CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHH----------hhhccCCCcHHHHHHHHH
Q 005632 255 LRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF----------LETNAGTDNGYLYLKLAE 322 (687)
Q Consensus 255 ~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~~~~~~~~~~~~~la~ 322 (687)
... .+.-.|..+|+..- .....-..+|.+.|.+.+|+++.=+ +.......+|.++..-+.
T Consensus 1017 l~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 111 22333444444421 0111223445555665555544321 112234558888888999
Q ss_pred HHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHH
Q 005632 323 CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK-EEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC 401 (687)
Q Consensus 323 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la 401 (687)
.+....+|++|..++-.+-+.. -.+..|..+.=. .++-.+.+.-..+..|... ...+++-.+|
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~-------~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~---------~R~~vLeqva 1152 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFS-------GALQLCKNRNVRVTEEFAELMTPTKDDMPNEQ---------ERKQVLEQVA 1152 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCchhHHHHHhcCcCcCCCccHH---------HHHHHHHHHH
Confidence 9999999999998877664321 112222221111 2333334444443333332 2457899999
Q ss_pred HHHHHcCCchHHHHHHHHHHHH
Q 005632 402 HIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 402 ~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
.+..++|.|..|-+-|.+.=.+
T Consensus 1153 e~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHhccchHHHHHHHhhhhhH
Confidence 9999999999998888776544
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.24 E-value=9.7e-07 Score=91.41 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=92.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
..-....+++.+|+..+.+.++..|+.+-+....|.++.++|..++|..+++..-...+++...+..+-.+|..+|++++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 44456677778888888888887887777777777777777777777777766666666667777777777777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
|..+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|.++..
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 77777777777776 6666666667777666665555555555556665543
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.23 E-value=3.6e-09 Score=98.19 Aligned_cols=185 Identities=12% Similarity=0.027 Sum_probs=134.9
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRI 140 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~ 140 (687)
.+..++..|..++..|++++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56677788888888888888888888888888877654 3778888888888888888888888887766 35677
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632 141 HLASFYVEIG---------------D---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (687)
Q Consensus 141 ~la~~~~~~g---------------~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 202 (687)
.+|.++...+ + ..+|+..|++.++..|++.-+ .+|...+..+-..-
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~l-- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDRL-- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHHH--
Confidence 7777654433 1 246777788888888876432 11211111111110
Q ss_pred CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 203 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 203 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
..--..+|..|.+.|.|..|+.-++.+++.+|. .+....++..++..|...|..++|......+.
T Consensus 175 ---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 ---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 012337899999999999999999999998654 45677899999999999999999998877654
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=3.8e-10 Score=111.75 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+...|..++..|++++|+..|.+++.++|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
++++|+..|+++++++|+++.+...++.+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777666666555433
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.18 E-value=3.1e-09 Score=96.40 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI 140 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 140 (687)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888888888888888888888888776654 46677888888888888888888888888877764 5677
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632 141 HLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209 (687)
Q Consensus 141 ~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 209 (687)
.+|.++.... ...+|+..|+..+...|++..+- +|...+..+-..- ..--
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~l-----a~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNRL-----AEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHHH-----HHHH
Confidence 7777665432 23466666666666666654221 1111111111000 0123
Q ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHH
Q 005632 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 265 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 265 (687)
..+|..|.+.|.+..|+..++.+++.+|. .+....++..++..+..+|..+.|..
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPD-TPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCChHHHHH
Confidence 47899999999999999999999999553 34456789999999999999985543
No 133
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-09 Score=99.89 Aligned_cols=123 Identities=20% Similarity=0.173 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYE 160 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 160 (687)
.+.-+.-++.-+..+|++.+.|..||.+|+..|++..|...|.+++++.|++++.+..+|.++..+.+ ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45556667777888999999999999999999999999999999999999999999999988876543 578889999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH
Q 005632 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206 (687)
Q Consensus 161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 206 (687)
+++..+|.++.+.+.||..++..|+|.+|...++.+++..|.+...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999999999999999988877653
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.14 E-value=1.3e-09 Score=90.38 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQL 108 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 108 (687)
..++..|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345666666667777777777777776666654 3566666666666666666666666666665553 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISL 138 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 138 (687)
|.++...|++++|+..+++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666666665543
No 135
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.4e-09 Score=96.76 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGIL 193 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 193 (687)
..+.-+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777888889999999999999999999999999999999999999999999999999887654 467889999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 005632 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY 254 (687)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (687)
++++..+|.+.. +.+.+|..++..|+|.+|...++..+...+.+.+....+-..+....
T Consensus 217 ~~al~~D~~~ir--al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~ 275 (287)
T COG4235 217 RQALALDPANIR--ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARAL 275 (287)
T ss_pred HHHHhcCCccHH--HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 999999999886 78899999999999999999999999997766666555544444433
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.13 E-value=3.7e-09 Score=90.43 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQ 107 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 107 (687)
....|..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4456666777777888888888888888888876 4567778888888888888888888888766544 345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 163 (687)
+|.++...|++++|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788888888888888888652 3334456677778888888888888888887763
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.12 E-value=4e-09 Score=108.60 Aligned_cols=121 Identities=9% Similarity=-0.031 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK--------GDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYE 153 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~ 153 (687)
...|+.+|+++++++|++..++..++.++... ++...+.....+++.. +|.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 33444444444444444444444444333221 1223444444454442 4555566666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 66666666666666 3566666666666666666666666666666666664
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=2.2e-09 Score=88.99 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHL 142 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l 142 (687)
+.++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 455566666666666666666666666555544 3455556666666666666666666666655543 3455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 171 (687)
|.++...|++++|+..+.++++..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 66666666666666666666666665544
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.10 E-value=9.3e-08 Score=88.23 Aligned_cols=309 Identities=17% Similarity=0.132 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE---TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
...+..|..++...++++|+..+.+.+..-.+... .+-.+..+...+|.|++++.+---.+.
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~--------------- 71 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID--------------- 71 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH---------------
Confidence 34556666777777777777777766654332221 222333444445555444433221111
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCG 184 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g 184 (687)
-+.+.+. ...+++.+++..+....++.+++.+-...+.+....+ .+...++..+..++
T Consensus 72 ---------------~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls 136 (518)
T KOG1941|consen 72 ---------------TARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS 136 (518)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH
Confidence 1111110 0124566666666666666777666666665432222 45556777777777
Q ss_pred ChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC------CchHHHHHHHHHHH
Q 005632 185 QTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK------ELPLKLKVKAGICY 254 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 254 (687)
.++++++.|+.+++....+.+ ..++..+|.++....++++|.-+..++.++...-. .....+++.++..+
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 777777777777766433322 24566778888888888888877777776632111 12234566777777
Q ss_pred HHcCCHHHHHHHHHHHhhh-----CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHH
Q 005632 255 LRLGNMEKAEILFADLQWK-----NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLAECY 324 (687)
Q Consensus 255 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~ 324 (687)
..+|....|.++.+++.+. +..........+|++|...|+.+.|..-|+.+.... .-....++...|.++
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 8888888888877775332 222355566778888888888888888888776541 112345566666666
Q ss_pred HHhhcHHH-----HHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCC
Q 005632 325 LSLKERAH-----AIMFFYKALDRFEDN------IDARLTLASLLLEEAKEEEAITLLSP 373 (687)
Q Consensus 325 ~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 373 (687)
....-..+ |+++-++++++...- ...+..++.+|..+|.-++-...+..
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 65544444 777777777765421 34567788888888776665554443
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.08 E-value=3.3e-05 Score=80.53 Aligned_cols=226 Identities=13% Similarity=0.031 Sum_probs=141.4
Q ss_pred HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES 158 (687)
Q Consensus 79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 158 (687)
...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|+.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35577778888888888888887777777777888888888888777766666677777777777888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch---------HHHHHHHH
Q 005632 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA---------YEKTLQHI 229 (687)
Q Consensus 159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~---------~~~A~~~~ 229 (687)
|+++...+|+ .+....+-.+|.+.+.|.+-.+.--++.+..|..+-. .|..+..+...... ..-|....
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy-fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY-FWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 8888888887 6667777777777777776666655566666766542 34433333332211 12355555
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 230 EHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD-LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
++.+..- + .-....-....-.++..+|++++|...+.. ..+..++.+..........+...+++.+-.++..+++..
T Consensus 178 ~~~l~~~-g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 178 QKLLEKK-G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHhccC-C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 5555541 1 111111122233445566777777777733 333333333444444555666666666666666666655
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=2.4e-08 Score=85.29 Aligned_cols=221 Identities=14% Similarity=0.063 Sum_probs=144.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE-EYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A 225 (687)
.--|++.-|.+.+.+..+.+|++|---..+-. -...-++.+|...+. ++...+.+.- -|+ +...|...=..+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~W---G~~-iV~~yLgkiS~e-- 216 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQW---GWN-IVEFYLGKISEE-- 216 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhh---hHH-HHHHHHhhccHH--
Confidence 88888888888888888888888743222221 223345666665443 3333332221 122 222222111111
Q ss_pred HHHHHHHHHHhccC----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH---HHHHHHHHHHHhcCChH
Q 005632 226 LQHIEHAQIVRFSG----KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA---DLITEVADTLMSLGHSN 296 (687)
Q Consensus 226 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~ 296 (687)
..++++... ..+ ...-.+.++.+|..+...|+.++|...|+-++..+.-+.. -+...++.+.....+..
T Consensus 217 -~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 217 -TLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred -HHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhh
Confidence 112222221 111 1233567888888888999999998888887776553333 34445555554444433
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=99.07 E-value=1.7e-08 Score=98.15 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHc---------CChHHHHHHHHHHhccCCC
Q 005632 36 KMLGEASLQYAYGN---FEQAISLLKEVV---RLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSPK 100 (687)
Q Consensus 36 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~ 100 (687)
.++.+|...+..+. .+.|+.+|.+++ ..+|+.+.+|..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44555665554443 355666666666 66666666666666666543 1233555555666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 6666666666666666666666666666666666666666666666666666666666666666666543
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.07 E-value=3.2e-08 Score=95.18 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHc
Q 005632 151 DYEKAAESYEQIQKLFPD--N----VDATKTGAQLFLKC-GQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMEN 219 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~ 219 (687)
++++|+.+|++++.+.-. + ...+..+|.+|... |++++|+++|+++++....... ...+..+|.++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555555443110 0 13344555555555 5666666666666554221111 12344566666666
Q ss_pred chHHHHHHHHHHHHHHhccCCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 220 NAYEKTLQHIEHAQIVRFSGKE---LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 220 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
|+|++|+..|+++....-..+- .....++..+.|++..|++..|...+++....+|
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666666666554111111 1112334555566666666666666666554443
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=9.9e-08 Score=84.60 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=174.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 189 (687)
+-++-.|+|..++...++.-... ...+....+.+.|..+|++...+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44556677777777666654433 566677777788888887766554443322 12234455555555555555555
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 269 (687)
+..+.+.+..............-+.++...|++++|+........ .++...-..++.+..+++-|...+++
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444443322222222344566788888888888888776332 23444455677788888888888888
Q ss_pred HhhhCchhhHHHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632 270 LQWKNAIDHADLITEVADTLMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE 345 (687)
Q Consensus 270 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 345 (687)
+.+.+ +...+..+|..+.. .+++.+|.-+|+...+. .+..+.+....+.|+..+|++++|...++.++..++
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 76553 34445555555543 34788999999998876 677889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HhcCCCCcCCcccC
Q 005632 346 DNIDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLDM 382 (687)
Q Consensus 346 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~ 382 (687)
++++++.++..+-...|...++. +.+.+.....|..+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 99999999999988999876654 45566666677654
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=5.6e-09 Score=92.11 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=81.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHH
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 119 (687)
+-.+.|..+...+...+..++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 34455667777776666555554 5677888888888888888888888888776553 357888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+|+..+++++...|.....+..+|.++...|
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 8888888888888888888888888877333
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=2.4e-08 Score=85.24 Aligned_cols=221 Identities=15% Similarity=0.072 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181 (687)
Q Consensus 102 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 181 (687)
...++..|..|-..|-+.-|.--|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|.+.-+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44567778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHH
Q 005632 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261 (687)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (687)
.-|++.-|.+-+.+..+.+|+++-...|..+. ...-++.+|...+.+-.+. .....+-+...+. |...=..+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~-yLgkiS~e 216 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEF-YLGKISEE 216 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHH-HHhhccHH
Confidence 99999999999999999999887533333222 3345677776665443332 1212222222111 11111122
Q ss_pred HHHHHHHHHhhhC---chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC---CCcHHHHHHHHHHHHHhhcH
Q 005632 262 KAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG---TDNGYLYLKLAECYLSLKER 330 (687)
Q Consensus 262 ~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 330 (687)
...+........+ ...-.+.++.+|..+...|+.++|..+|+-++...- -+.-.+.+.++.+.....+.
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchh
Confidence 2222222211111 123567788999999999999999999987775521 12333445555555444433
No 147
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.04 E-value=1.5e-07 Score=86.86 Aligned_cols=239 Identities=14% Similarity=0.116 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 005632 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDA 172 (687)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 172 (687)
++.+++..+....++.+++.+-...+.+.... ..+...++..+..++.++++++.|+.+++....+ ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 34444444444444444444444433322111 1233344444444555555555555554442221 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--cH------HHHHHHHHHHHHcchHHHHHHHHHHHHHHh--ccCCCc
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDA--DL------SVIDLLVAILMENNAYEKTLQHIEHAQIVR--FSGKEL 242 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 242 (687)
+..+|.++....++++|.-+..++.++..+.. ++ -+++.++..+..+|+.-.|.++.+++.++. ..+.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 44445555555555555554444444321110 00 123344444445555555555555444431 112222
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc-----hhhHHHHHHHHHHHHhcCCh-----HHHHHHHHHhhhccC--
Q 005632 243 PLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-----IDHADLITEVADTLMSLGHS-----NSALKYYHFLETNAG-- 310 (687)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~~~~~~~-- 310 (687)
.......+|.+|...|+.+.|..-|+.+..... -....++...+.++....-. =.|+++-+++++...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 333344445555555555555555554432111 01222333333333322222 235555555554411
Q ss_pred ---CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632 311 ---TDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 311 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (687)
-........++.+|..+|.-++-...+..+-+
T Consensus 325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 12345667788888888877776666666544
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=1.4e-08 Score=104.77 Aligned_cols=144 Identities=20% Similarity=0.168 Sum_probs=111.4
Q ss_pred CCCCChhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--------ChHHHHHHHHHHh
Q 005632 27 KNKLSPGVTKMLGEASLQYAYGN---FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--------NHKSAFDFYVIAA 95 (687)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al 95 (687)
..+.++++..++.+|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34456677778888888876655 778888888888888888888888887775542 2345555566655
Q ss_pred cc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 96 HL--SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (687)
Q Consensus 96 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 171 (687)
.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 53 666777888888888888888888888888888888 4778888888888888888888888888888888775
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.03 E-value=1.2e-06 Score=82.06 Aligned_cols=293 Identities=15% Similarity=0.070 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-HHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFA 112 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 112 (687)
+.+..|.+....||-..|.+.-.+.-..-.. .+-++..-+....-.|+++.|.+-|+.++. +|..- -.+..|-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 4566688888889988888888887644333 344556667777888999999999988775 33321 2233333444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HH--HHHHHHHHHHcC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL---FPDNV---DA--TKTGAQLFLKCG 184 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~---~~--~~~la~~~~~~g 184 (687)
...|+.+.|..+-+.+....|.-+.++...-...+..|+++.|++..+..... .++.. .+ +...+.. .-..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcC
Confidence 57788999999999999999988888888888888899999999888776543 22211 11 1122222 2234
Q ss_pred ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 264 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 264 (687)
+...|...-.++.++.|+... .-..-+..++..|+..++-..++.+.+. .|.+. ++..|.....-+.++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~----ePHP~-----ia~lY~~ar~gdta~ 312 (531)
T COG3898 244 DPASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKA----EPHPD-----IALLYVRARSGDTAL 312 (531)
T ss_pred ChHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhc----CCChH-----HHHHHHHhcCCCcHH
Confidence 678888888888888888776 4557788888999999999999988887 33332 233344333333444
Q ss_pred HHHHHH--hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh-hcHHHHHHHHHHHH
Q 005632 265 ILFADL--QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL-KERAHAIMFFYKAL 341 (687)
Q Consensus 265 ~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 341 (687)
.-++++ +....+++.+....++..-+..|++..|..--+.+... .....++..++.+-... |+-.+...++-+++
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 444443 22223358888888999999999999988888777755 33455777788887766 99999999999988
Q ss_pred Hh
Q 005632 342 DR 343 (687)
Q Consensus 342 ~~ 343 (687)
+.
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 74
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=1.6e-08 Score=89.51 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=87.1
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
..+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456677888888888888888888888888766543 45778888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
|.++...|+...+...+..++. .+++|++.+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888876666555554432 2566666777776666665
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.02 E-value=1.2e-09 Score=83.36 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 124 (687)
+|+|+.|+.+++++++.+|. +...++.+|.|++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888888774 455677778888888888888888877 667777777777778888888888888887
Q ss_pred HHHH
Q 005632 125 IRQA 128 (687)
Q Consensus 125 ~~~a 128 (687)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.01 E-value=1.5e-09 Score=79.42 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAE 132 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~ 132 (687)
..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 333444444444444444444444444444444444444444444444 3444444444444433
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=1.4e-08 Score=89.89 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
...++.+|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+..+.+++...|.+...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3344555555555555555555555555544332 2345555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQA 128 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a 128 (687)
++...|+...+...++.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHcCChHhHhhCHHHH
Confidence 555555555544444433
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.00 E-value=2.6e-08 Score=85.21 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=51.8
Q ss_pred cCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 005632 81 LGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEK 154 (687)
Q Consensus 81 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~ 154 (687)
.++...+...++..+...|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444444444444444444444 2334444555555555555555555555444322 2234444555555555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 155 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
|+..++. +...+-.+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5554433 1112222334444445555555555554444443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=5.6e-09 Score=82.84 Aligned_cols=90 Identities=26% Similarity=0.423 Sum_probs=34.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (687)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 153 (687)
+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHH
Q 005632 154 KAAESYEQIQ 163 (687)
Q Consensus 154 ~A~~~~~~~~ 163 (687)
.|...+.+++
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.4e-09 Score=78.31 Aligned_cols=63 Identities=25% Similarity=0.490 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD 101 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 101 (687)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=98.99 E-value=9.3e-09 Score=85.40 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
....+..|..++..|++++|..+|+-+...+|.+++.+..||.|+..+++|++|+..|..+..++++++...+..|.|++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~ 130 (687)
..|+...|..+|+.++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 55555555555555544
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.98 E-value=1.4e-08 Score=89.48 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005632 82 GNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAA 156 (687)
Q Consensus 82 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~ 156 (687)
..+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 44566666666665555544 5667899999999999999999999999887653 458999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHHhCCCC
Q 005632 157 ESYEQIQKLFPDNVDATKTGAQLFL-------KCGQTA-------RSIGILEEYLKVHPSD 203 (687)
Q Consensus 157 ~~~~~~~~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~ 203 (687)
..+++++.+.|.....+..+|.++. ..|+++ +|+..+++++..+|.+
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999998888888888 566655 4444444555555544
No 159
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=3.8e-06 Score=85.99 Aligned_cols=227 Identities=18% Similarity=0.212 Sum_probs=119.6
Q ss_pred HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHHH
Q 005632 80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI------------RQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~a~~~~p~~~~~~~~la~~~~ 147 (687)
..|+.+.|.+..+-. .....|.++|.......+.+-|.-++ +++.+ +|+. .-...|.+..
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHHH
Confidence 345666655544332 22345666666665555555444333 23322 2322 2233455666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHH
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~ 227 (687)
.+|..++|...|+++-.. -.+-.+|...|.+++|.++.+.--+++-. ..+++.+.-+...++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHHH
Confidence 777778888888776543 24456677777777777766543222211 246677777777777777887
Q ss_pred HHHHHHHH-------hccC---------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh
Q 005632 228 HIEHAQIV-------RFSG---------KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS 291 (687)
Q Consensus 228 ~~~~~~~~-------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 291 (687)
+|+++-.. ...+ ...+..+|.--|..+...|+.+.|+.+|..+. -|+.+..+..-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEee
Confidence 77764211 0000 00111223333444444455555555554431 12333444444
Q ss_pred cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632 292 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (687)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (687)
+|+.++|-.+.+ ...+..+.+.+|+.|...|++.+|+.+|.++-
T Consensus 951 qGk~~kAa~iA~------esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAE------ESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHH------hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555555544331 23445566677777777777777777776654
No 160
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.9e-07 Score=80.89 Aligned_cols=256 Identities=14% Similarity=0.136 Sum_probs=159.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
.+.++-.|+|..++..-.+.-... ...+....+...|+.+|.+..-+......- .....+...++.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 667777888988888777664433 667777888888888888765554433221 1223444555555555555555
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 121 AMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 121 A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
-+.-..+.+... ..+......-|.++...|++++|+...... .+.++...-..++.++.+++-|.+.++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 544444433322 222344555567777888888887777663 3445555556677777888888888887777
Q ss_pred hCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 005632 199 VHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 274 (687)
Q Consensus 199 ~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 274 (687)
.+.+. .+..||..+.. .+.+.+|.-+|+..-+. .+..+......+.+.+.+|++++|...++.++..+
T Consensus 166 ided~----tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 166 IDEDA----TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchHH----HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 66443 34445555443 24566777777776654 45556666677777777777777777777777776
Q ss_pred chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH
Q 005632 275 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG 314 (687)
Q Consensus 275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 314 (687)
+. +++.+.++..+-...|...++..-+-.-+...+|..+
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 64 6777777777777777666655544433333355554
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.98 E-value=7.1e-09 Score=82.23 Aligned_cols=99 Identities=22% Similarity=0.399 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
.++..|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 005632 116 GDTAQAMYYIRQAIRAEPK 134 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~ 134 (687)
|++++|...+.+++..+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=2.1e-08 Score=93.66 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---CHHHH
Q 005632 33 GVTKMLGEASLQ-YAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALW 105 (687)
Q Consensus 33 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 105 (687)
+....|..|..+ +..|+|++|+..|+..+..+|++ +.+++.+|.+|+..|++++|+..|++++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457778888876 56789999999999999998886 578899999999999999999999998877766 46778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL 138 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 138 (687)
+.+|.++...|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 888888888888888888888888888877654
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=98.98 E-value=1e-08 Score=85.22 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=92.7
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (687)
Q Consensus 62 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 141 (687)
.+.++.-+..+..|.-++..|++++|...|+-+...+|.+++.|..||.++..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34455667788889999999999999999999888899999999999999999999999999999999998899989999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
.|.|++..|+...|..+|..++. .|.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999998888 3443
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=3.4e-09 Score=77.52 Aligned_cols=67 Identities=33% Similarity=0.591 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005632 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKLFP 167 (687)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 167 (687)
++..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666666666666666666666666666666666666666666 46666666666666554
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.95 E-value=8.4e-08 Score=93.42 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=138.3
Q ss_pred HHhCCCch---HHH----HHHHHHHHHcCC---hHHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHc---------CCH
Q 005632 61 VRLSPNLP---ETY----NTLGLAHSALGN---HKSAFDFYVIAA---HLSPKDSALWKQLLTFAVQK---------GDT 118 (687)
Q Consensus 61 l~~~p~~~---~~~----~~l~~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~ 118 (687)
....|.+. ++| +..|...+..+. .+.|+.+|.+++ .++|....++..++.|++.. .+.
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 34445555 444 677777766654 568999999999 99999999999999998754 245
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 119 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
.+|....+++++++|.|+.++..+|.++...++++.|...|++++.++|+...+++..|.+....|+.++|...++++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH
Q 005632 199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEH 231 (687)
Q Consensus 199 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 231 (687)
++|......+.......|+ ....+.|+..|-+
T Consensus 401 LsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred cCchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 9998765433322233443 4456677776654
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.94 E-value=5.3e-09 Score=75.31 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=39.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 136 (687)
.+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4556666666666666666666666666666666666666666666666666666666666553
No 167
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.93 E-value=1.5e-09 Score=98.99 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT 118 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 118 (687)
.+|+.|+.+|.|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...+..++.++.....+|...+..-..+|..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45777888888888888888888888888888888888888888888888888888887777777777777777788888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 119 AQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 119 ~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
.+|..-++.++.+.|++.+..-.++.+
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 888888888888888766655444433
No 168
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=4.4e-07 Score=97.90 Aligned_cols=221 Identities=13% Similarity=0.075 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCC--cHHHHHHHHHHHHHcchHHHHHHH
Q 005632 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV-HPSDA--DLSVIDLLVAILMENNAYEKTLQH 228 (687)
Q Consensus 152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~--~~~~~~~la~~~~~~~~~~~A~~~ 228 (687)
-.+..+-|++.+..+|+..-.|.......++.++.++|.+..++++.. ++... ...+|..+-++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344566788888889999999999999999999999999999999875 33322 224566666666667777888899
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
|+++.+. -....++..+.-+|...+++++|.++++.+++... .....|...+..++...+-++|..++.+++..
T Consensus 1520 FeRAcqy-----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1520 FERACQY-----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 9999886 45667888899999999999999999999998877 58899999999999999999999999999876
Q ss_pred cCCC--cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632 309 AGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 309 ~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 379 (687)
-|. +.......|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+-+..+|++++...-
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 444 7888888999999999999999999999999999999999999999999999999999999887654
No 169
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.5e-07 Score=87.81 Aligned_cols=340 Identities=15% Similarity=0.096 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHh-ccCCC--------CHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA-HLSPK--------DSALW 105 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~--------~~~~~ 105 (687)
.....+...++...+...+....+.++.+..+.+.+++..+..++..|++.+|.+.+...- ...|. ....|
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 3344456667778888888888888888888889999999999999999999998875432 11222 22347
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRA---------EP---------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 167 (687)
.++|.++++.|.|.-+..+|.+++.. .| ...+..++.|..|...|++-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 89999999999999999999999851 11 2346789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHH--H--------------HHh--CCCCCc----HHHHHHHHHHHHHcchH
Q 005632 168 DNVDATKTGAQLFLKCGQ---TARSIGILEE--Y--------------LKV--HPSDAD----LSVIDLLVAILMENNAY 222 (687)
Q Consensus 168 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~--~--------------~~~--~p~~~~----~~~~~~la~~~~~~~~~ 222 (687)
.+|..|..++.++....+ .++......+ . ++. .+..+. +..-..++.++.+.+-+
T Consensus 367 ~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~ 446 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALY 446 (696)
T ss_pred cCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhh
Confidence 999999999998764321 1111111111 0 000 000000 00011122222211100
Q ss_pred -----HHHHHHHHHHHH---H-------------------------hccCCCc--------hHHHHHHHHHHHHHcCCHH
Q 005632 223 -----EKTLQHIEHAQI---V-------------------------RFSGKEL--------PLKLKVKAGICYLRLGNME 261 (687)
Q Consensus 223 -----~~A~~~~~~~~~---~-------------------------~~~~~~~--------~~~~~~~l~~~~~~~~~~~ 261 (687)
..--..+.-+.. . .+++.|. ...++...+.+-...|+.-
T Consensus 447 Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i 526 (696)
T KOG2471|consen 447 LLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPI 526 (696)
T ss_pred cCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 000000000000 0 0000111 1245677788888889988
Q ss_pred HHHHHHHHHhhhCchhhHHHHHHHHHH-----HHhcCChHHHHHHHHHhh------hcc----------------CC---
Q 005632 262 KAEILFADLQWKNAIDHADLITEVADT-----LMSLGHSNSALKYYHFLE------TNA----------------GT--- 311 (687)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~la~~-----~~~~g~~~~A~~~~~~~~------~~~----------------~~--- 311 (687)
.|+..-++++... +-..++..+|.+ +....+..+|...+.--. ... +|
T Consensus 527 ~AL~~a~kLLq~~--~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~ 604 (696)
T KOG2471|consen 527 KALSAATKLLQLA--DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTG 604 (696)
T ss_pred hHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCC
Confidence 8888888887653 255555555444 456677777777665311 000 00
Q ss_pred ---C---------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 312 ---D---------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFE--DNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 312 ---~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
. ....++++|.++.-+|++++|..++..+..+-| .++.+......+-..+|+...|...+++..-
T Consensus 605 r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 605 RTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred CCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 0 123578999999999999999999999998877 5567776666777889999999998886543
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.91 E-value=4.7e-09 Score=80.04 Aligned_cols=78 Identities=31% Similarity=0.447 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
|+++.|+..++++++..|. +...++.+|.+++..|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444444444442 222333344444444444444444444 3334444444444444444444444444444
Q ss_pred H
Q 005632 194 E 194 (687)
Q Consensus 194 ~ 194 (687)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 171
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.89 E-value=6.5e-07 Score=80.15 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH---H
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA---L 104 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 104 (687)
...+..++.+|...++.|+|++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+.+.|+++. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3456789999999999999999999999999888864 467888999999999999999999999999887653 4
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHH
Q 005632 105 WKQLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISL-----------------RIHLASFYVEIGDYEKAAESY 159 (687)
Q Consensus 105 ~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~ 159 (687)
++..|.+++.. .-..+|+..|+..+...|++.-+ -...|..|.+.|.+..|+.-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 55666665433 12456777778888888876422 122445555555555555555
Q ss_pred HHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHH
Q 005632 160 EQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 160 ~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
+.+++..|+.. +++..+...|..+|-.++|...-
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 55555544432 34445555555555555555443
No 172
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=1.6e-06 Score=93.74 Aligned_cols=237 Identities=15% Similarity=0.168 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKD----ISLRIHLASFYVEIGDYEKAAES 158 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 158 (687)
-.+..+.|++.+..+|+..-.|..+.....+.++.++|....++++.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344456667777777777777777777777777777787777777763 3322 23455555555555666666777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc
Q 005632 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS 238 (687)
Q Consensus 159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 238 (687)
|+++.+.. +...++..|..+|...+++++|.++++.+++...... .+|..++..++++.+-+.|...+.++++..|
T Consensus 1520 FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP- 1595 (1710)
T KOG1070|consen 1520 FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAARELLKRALKSLP- 1595 (1710)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-
Confidence 77777654 2346677777788888888888888888777766433 3677788888888777788888888877744
Q ss_pred CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCCcHHHH
Q 005632 239 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTDNGYLY 317 (687)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 317 (687)
...........+.+.++.|+.+.+..+|+..+...|. ..+.|.-+.+.-...|+.+.+..+|++++... .+.....+
T Consensus 1596 -k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1596 -KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred -hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence 2345666667777777888888888888887777775 77788888888888888888888888877653 23344444
Q ss_pred HHHHHHHHH
Q 005632 318 LKLAECYLS 326 (687)
Q Consensus 318 ~~la~~~~~ 326 (687)
+..=.-|.+
T Consensus 1674 fKkwLeyEk 1682 (1710)
T KOG1070|consen 1674 FKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHH
Confidence 444333443
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.88 E-value=7.9e-06 Score=76.67 Aligned_cols=292 Identities=16% Similarity=0.086 Sum_probs=216.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 005632 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDS--ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIG 150 (687)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g 150 (687)
-|.+..-.||-..|.+.-.++-.+-..+. -++..-+..-.-.|+++.|.+-|+.++. +|.. .-.+..|-.-....|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcc
Confidence 35566667899999998888875543333 3344447778889999999999999885 2321 111222333345789
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCcH-HHHHHHHH-HHHHcchHHHH
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH---PSDADL-SVIDLLVA-ILMENNAYEKT 225 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~-~~~~~la~-~~~~~~~~~~A 225 (687)
..+.|..+-+++....|.-+.++...-......|+++.|+++.+...... ++-.+. .+...-+. .-.-..+...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999988889999999999999998766542 222110 01111111 11223567888
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 305 (687)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (687)
...-.++.++ .|.....-...+..+++.|+..++-.+++.+-+..| ++.+ +..|....--+.++.-++++
T Consensus 249 r~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~i----a~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 249 RDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDI----ALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred HHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHH----HHHHHHhcCCCcHHHHHHHH
Confidence 8888899888 777777788889999999999999999999988777 4443 34444444444555556554
Q ss_pred hhc--cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHhcCCCCcC
Q 005632 306 ETN--AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE-AKEEEAITLLSPPKDL 377 (687)
Q Consensus 306 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 377 (687)
... ..|++.+..+..+..-+.-|++..|..--+.+....|. ..++..|+.+-... |+-.++...+.+++..
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 332 37999999999999999999999999999999999986 45677788887765 9999999999888764
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.87 E-value=8.2e-06 Score=77.76 Aligned_cols=223 Identities=26% Similarity=0.309 Sum_probs=137.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAH--LSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35666666777776666665 356666777777777777777777777765 55666666777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 123 YYIRQAIRAEPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFP---DNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
..+..++...+.+.......+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766655444444444 66677777777777777666554 2344445555555666666666666666666
Q ss_pred hCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 199 VHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 199 ~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
..+. ... .+..++..+...++++.|...+..++.. .+.........+..+...+.++.+...+.+.+...+
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAE--ALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchH--HHHHhhHHHHHcccHHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6665 232 4556666666666666666666666665 333333344444444444455555555555554443
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.87 E-value=9.9e-08 Score=89.13 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005632 101 DSALWKQLLTFA-VQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDAT 173 (687)
Q Consensus 101 ~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~ 173 (687)
+...++..|..+ +..|+|++|+..|+..+..+|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 344455555544 44567777777777777777766 4667777777777777777777777777766653 5666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
+.+|.++...|++++|...|+++++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6777777777777777777777777777665
No 176
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.4e-08 Score=90.93 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
.++.+++.|+..+++|.+|+....+++..+|+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888887777777777766
Q ss_pred cCChHHH-HHHHHHHHHhCC
Q 005632 183 CGQTARS-IGILEEYLKVHP 201 (687)
Q Consensus 183 ~g~~~~A-~~~~~~~~~~~p 201 (687)
..++.+. .+.|..++..-+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 6555544 567777766543
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.85 E-value=3.7e-07 Score=87.85 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=125.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC--CchHHHHHHH
Q 005632 177 AQLFLKCGQTARSIGILEEYLKVHPSD----ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKA 250 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l 250 (687)
|..|...|++++|...|.++....-.. .....+...+.++... ++++|+.++++++..+...+ .....++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444555566666666665554432111 1112344445554444 77777777777777653222 2234566677
Q ss_pred HHHHHHc-CCHHHHHHHHHHHhhhCc-----hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC--CC----cHHHHH
Q 005632 251 GICYLRL-GNMEKAEILFADLQWKNA-----IDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TD----NGYLYL 318 (687)
Q Consensus 251 ~~~~~~~-~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~ 318 (687)
|.+|... |++++|+.+|+++..... ......+..+|.++...|+|++|++.|+++..... +. ....++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 7777777 788888888888765322 22456677889999999999999999998775421 11 123556
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHH--cCCHHHHHHhcCCCCcCCc
Q 005632 319 KLAECYLSLKERAHAIMFFYKALDRFEDN---I--DARLTLASLLLE--EAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~--~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~ 379 (687)
..+.|++..||+..|...+++....+|.. . .....|...+.. ...+.+|+.-|.....+++
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 77889999999999999999999998854 2 233344454433 3458889999988877766
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.85 E-value=2.3e-05 Score=74.55 Aligned_cols=222 Identities=23% Similarity=0.262 Sum_probs=131.9
Q ss_pred cCChHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 81 LGNHKSAFDFYVIAAHLSPK--DSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAA 156 (687)
Q Consensus 81 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~ 156 (687)
.+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666777777666655 356666777777777777777777777776 56666677777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Q 005632 157 ESYEQIQKLFPDNVDATKTGAQ-LFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (687)
Q Consensus 157 ~~~~~~~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 234 (687)
..+..++...+.+.......+. ++...|+++.|...+.+++...|. ..........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766665444444444 677777777777777777665542 11112344444445566666666666666666
Q ss_pred HhccCCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632 235 VRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (687)
Q Consensus 235 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (687)
. .+. ....+..++..+...+++..|...+..++...+. ....+...+..+...+.++++...+.+...
T Consensus 196 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 L----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred h----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 333 3444555555555555555555555555544432 233333333333334444444444444443
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6e-08 Score=91.91 Aligned_cols=144 Identities=20% Similarity=0.209 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
....|..+++.|+|..|...|++++..-+... .-+.++.... .. .-..++.+++.++.+++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~----~~---~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA----EA---LKLACHLNLAACYLKLK 271 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH----HH---HHHHHhhHHHHHHHhhh
Confidence 44556777777777777777777665321100 0000111110 00 11235778888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH-HHHH
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT-LQHI 229 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A-~~~~ 229 (687)
+|..|+..+.+++..+|+|..+++..|.++...|+++.|+..|+++++..|++.. +...+..+..+..++.+. .+.|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888865 555666666665555444 6677
Q ss_pred HHHHHH
Q 005632 230 EHAQIV 235 (687)
Q Consensus 230 ~~~~~~ 235 (687)
.++...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777665
No 180
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=0.00014 Score=70.53 Aligned_cols=387 Identities=15% Similarity=0.029 Sum_probs=243.8
Q ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHH-HcCChHHHHHHHHHHhccC---CCC--
Q 005632 33 GVTKMLGEASLQYAYG--NFEQAISLLKEVVRLSPNL---PETYNTLGLAHS-ALGNHKSAFDFYVIAAHLS---PKD-- 101 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~---p~~-- 101 (687)
-...+++.|..+...| +...++++++..+...|.+ +.....+|.+++ ...+++.|...++++..+. |+.
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 4567889999999999 9999999999999887763 446677777665 4789999999999998664 333
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H
Q 005632 102 --SALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----V 170 (687)
Q Consensus 102 --~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~ 170 (687)
..+...++.+|.... .+..+...+++++++....+ ...+.++.++.-..++..|++.+.-..+....- .
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl 165 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL 165 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence 345678899998877 88999999999999876665 356789999999999999999854332221111 1
Q ss_pred HHHHHH--HHHHHHcCChH---HHHHHHHHHHHhCCCCCcH----HH-HHHHH-HHHHHcchHHHHHHHHHHHHHH---h
Q 005632 171 DATKTG--AQLFLKCGQTA---RSIGILEEYLKVHPSDADL----SV-IDLLV-AILMENNAYEKTLQHIEHAQIV---R 236 (687)
Q Consensus 171 ~~~~~l--a~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~----~~-~~~la-~~~~~~~~~~~A~~~~~~~~~~---~ 236 (687)
.+.+.+ +.++...-+.. .+.....++.+....++.- .+ +..+- .-|...|+...+...+++.-.. .
T Consensus 166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence 222322 33333333333 3444444444443333211 11 11222 2334457766666665544332 1
Q ss_pred cc-----------CCCchHHHH---------HHH--HHHHHHcCCHHHHHHHHHHHhhhCch----h---------hHHH
Q 005632 237 FS-----------GKELPLKLK---------VKA--GICYLRLGNMEKAEILFADLQWKNAI----D---------HADL 281 (687)
Q Consensus 237 ~~-----------~~~~~~~~~---------~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~----~---------~~~~ 281 (687)
.. .++.....| ..+ ...-...|-+++|.++-++++..... + ....
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 11 011111111 111 11112346677777777766543110 0 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcc--CCC-------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC-C--HH
Q 005632 282 ITEVADTLMSLGHSNSALKYYHFLETNA--GTD-------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFED-N--ID 349 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~ 349 (687)
+..++.+-.-.|++.+|++-...+.+.. .|. .+.+...+|.....-+.++.|...|..+.+.... + .-
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4456667778899999998887766541 233 4556677787777888999999999999887543 2 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
+..++|.+|...|+.+.-.+.++..-..+... ....-....+++..|...+.+|++.||...+.+.++-+
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s-----~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNS-----LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc-----chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 44679999999998777666666443322111 11223455688999999999999999976666665544
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.83 E-value=3.4e-07 Score=76.40 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005632 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY 338 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 338 (687)
+++....-..+.+...| ...-.+.++..+.+.|++.+|...|++++.....+++..+..+++..+..+++..|...++
T Consensus 71 dP~R~~Rea~~~~~~Ap--Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 71 DPERHLREATEELAIAP--TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred ChhHHHHHHHHHHhhch--hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44444444444444433 5566788999999999999999999998877677889999999999999999999999999
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632 339 KALDRFED--NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDA 416 (687)
Q Consensus 339 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 416 (687)
+..+.+|. .++..+.++..+...|++.+|...|+.+++..|.. +.....+..+..+|+.++|...
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------------~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-------------QARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHhcchhHHHHH
Confidence 99998885 47788889999999999999999999999888854 4677788889999999999998
Q ss_pred HHHHHHHhhhhHHHhh
Q 005632 417 IFPLVCESLCVEALRQ 432 (687)
Q Consensus 417 ~~~~~~~~~~~~~~~~ 432 (687)
+..+.+......+...
T Consensus 216 ~~~v~d~~~r~~~H~r 231 (251)
T COG4700 216 YVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHHHHHhcchhHH
Confidence 8888877766544444
No 182
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=9.5e-05 Score=71.65 Aligned_cols=192 Identities=12% Similarity=-0.015 Sum_probs=118.7
Q ss_pred HhhcHHHHHHHHHHHHHhcC------CCH--------HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhh
Q 005632 326 SLKERAHAIMFFYKALDRFE------DNI--------DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW 391 (687)
Q Consensus 326 ~~g~~~~A~~~~~~al~~~p------~~~--------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 391 (687)
..|-+++|.++-++++.... ... ..+..++.+-.-.|++.+|++.+..+.+.....+.+ .-...
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~--~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP--LLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch--HHHHH
Confidence 34556777777777665421 111 223345666677899999998887666544332210 00012
Q ss_pred hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchh
Q 005632 392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKS 471 (687)
Q Consensus 392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (687)
..+.+++.+|.-....|.++.|...|....+..-..
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-------------------------------------------- 400 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-------------------------------------------- 400 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH--------------------------------------------
Confidence 244678888888888999999998888888765210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHH
Q 005632 472 ELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEE 551 (687)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e 551 (687)
+-+.-+...+|-.|.+.|+-+.
T Consensus 401 ----------------------------------------------------------dl~a~~nlnlAi~YL~~~~~ed 422 (629)
T KOG2300|consen 401 ----------------------------------------------------------DLQAFCNLNLAISYLRIGDAED 422 (629)
T ss_pred ----------------------------------------------------------HHHHHHHHhHHHHHHHhccHHH
Confidence 0011133466777888887666
Q ss_pred HHHHHHHHHHHhhccCc-hhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchh-------hHHHHHHHHHhcC
Q 005632 552 ASEIINLSMRLAYNILP-LEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSA-------WNCYYKVLSRMGK 622 (687)
Q Consensus 552 A~~~l~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~ 622 (687)
-.++++..--.+...++ +.-...+.+..+..++..|++.+|...+++.|+.. +..+. +.+++.++..-|+
T Consensus 423 ~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 423 LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGN 500 (629)
T ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcc
Confidence 65665544322111222 33356778888888999999999999999999765 33222 4555666666666
No 183
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=6.3e-05 Score=73.95 Aligned_cols=381 Identities=13% Similarity=0.059 Sum_probs=221.7
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH-
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ- 107 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 107 (687)
..|-++..++.+...+-.+ -+++..+.|++.+...|..+.+|.......+...+|+.-..+|.+.+...-+ .+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 4466778888777666655 9999999999999999999999999999999999999999999998864322 445543
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----HH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQA----IR---AEPKDISLRIHLASFYV---------EIGDYEKAAESYEQIQKLFPDNVD 171 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a----~~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p~~~~ 171 (687)
+..+-...|+...+....-++ +. .++.....|...+..+. .+.+.+.....|++++..--.+.+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 344444555555544444444 33 24555556666555443 233556677788888864322221
Q ss_pred -HHH-----------HHH--HHHHHcCChHHHHHHHHHHHHh-------CCCCCc---------H---------------
Q 005632 172 -ATK-----------TGA--QLFLKCGQTARSIGILEEYLKV-------HPSDAD---------L--------------- 206 (687)
Q Consensus 172 -~~~-----------~la--~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~---------~--------------- 206 (687)
.|. ..| .+--....|..|...+++.... +|.-+. .
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111 111 1112223344555554444332 111000 0
Q ss_pred ---------------------------HHHHHHHHHHHHcch--------------HHHHHHHHHHHHHHhccCCCchHH
Q 005632 207 ---------------------------SVIDLLVAILMENNA--------------YEKTLQHIEHAQIVRFSGKELPLK 245 (687)
Q Consensus 207 ---------------------------~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~ 245 (687)
.+|+..+..+...++ -+++..++++++... ......
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l---~~~~~~ 329 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL---LKENKL 329 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH---HHHHHH
Confidence 122222222222222 344444555444331 111222
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 005632 246 LKVKAGICYLRLG---NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 322 (687)
Q Consensus 246 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 322 (687)
+++.++..-...- +++.....+++++.....+..-++..+-..-.+..-...|..+|.++.+.. .....++..-|.
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHH
Confidence 2222222221111 244444555555444333233345555555556666777888888877552 222233333333
Q ss_pred -HHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHH
Q 005632 323 -CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC 401 (687)
Q Consensus 323 -~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la 401 (687)
=|...++.+-|...|+-.++..++.+..-......+...|+-..|..+|++++.. ..++. ...++|..+-
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~--------ks~~Iw~r~l 479 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD--------KSKEIWDRML 479 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh--------hhHHHHHHHH
Confidence 2556789999999999999999999998888999999999999999999998876 11111 0124666666
Q ss_pred HHHHHcCCchHHHHHHHHHHHHh
Q 005632 402 HIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 402 ~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..-..-|+...+++.-++.....
T Consensus 480 ~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHhcccHHHHHHHHHHHHHhc
Confidence 66677777777766555554443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=2e-08 Score=73.12 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=52.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+..|++++|+..|++++..+|+++.+++.+|.+++..|++++|...+.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888888888888888888888888888888888888888888888888888887777666654
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.79 E-value=2e-07 Score=91.67 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH--HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
.++..+..++..|.--.+-.... .|.... .--.+-..+...++++.|+..|++..+.+|+ +...++.++.
T Consensus 140 ~fi~~~~~~~~~G~~lG~~~~i~-----~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l 211 (395)
T PF09295_consen 140 NFIKLFPKLFERGWKLGSDPEIQ-----VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL 211 (395)
T ss_pred HHHHHHHHHhhcccccCCCCccC-----CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence 35555555666665443322211 133222 2223344455567888888888888877764 5666888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
..++..+|+..+.+++..+|.+...+...+..+...++++.|+...+++.+..|++...|..|+.+|...|+++.|+..+
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888899999999998888888888888999999999999888777
Q ss_pred HHH
Q 005632 194 EEY 196 (687)
Q Consensus 194 ~~~ 196 (687)
+.+
T Consensus 292 Ns~ 294 (395)
T PF09295_consen 292 NSC 294 (395)
T ss_pred hcC
Confidence 754
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.78 E-value=2.5e-07 Score=74.33 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK---DISLRIHL 142 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l 142 (687)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345555555555555555555555555543222 334555555555555555555555555555554 44444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~ 163 (687)
+.++...|++++|+..+..++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555444
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.77 E-value=2.5e-07 Score=90.97 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=111.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 184 (687)
...+..++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 335556667788999999999999987764 66778999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
+++.|+.+.++++...|++.. .|..|+.+|...|+++.|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFE--TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999876 79999999999999999998888654
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=2.8e-07 Score=83.38 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---CHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALWKQ 107 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 107 (687)
....|..|..++..|+|..|...|...++..|+. +.++|.||.+++.+|++++|...|..+++..|+ -+++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3558999999999999999999999999999874 678999999999999999999999999887665 4678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 141 (687)
+|.+...+|+.++|-..|+++++..|+...+...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999888766543
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.9e-06 Score=73.68 Aligned_cols=204 Identities=19% Similarity=0.161 Sum_probs=150.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI 252 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (687)
....|.+....|...+.+.-+...... ...+..........+..+..+++-+. .+.+.+..
T Consensus 125 R~lhAe~~~~lgnpqesLdRl~~L~~~---------V~~ii~~~e~~~~~ESsv~lW~KRl~----------~Vmy~~~~ 185 (366)
T KOG2796|consen 125 RILHAELQQYLGNPQESLDRLHKLKTV---------VSKILANLEQGLAEESSIRLWRKRLG----------RVMYSMAN 185 (366)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHH---------HHHHHHHHHhccchhhHHHHHHHHHH----------HHHHHHHH
Confidence 334456666667766666555544321 11222222333333444555544332 34567778
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHh
Q 005632 253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLAECYLSL 327 (687)
Q Consensus 253 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~ 327 (687)
++.-.|.|.-....+.++++.+|+..+.....+|.+..+.|+.+.|..+++.+.+.. ......+..+.+.+|...
T Consensus 186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~ 265 (366)
T KOG2796|consen 186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ 265 (366)
T ss_pred HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc
Confidence 888889999999999999998887899999999999999999999999998654331 233556677788889999
Q ss_pred hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 005632 328 KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY 404 (687)
Q Consensus 328 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 404 (687)
+++.+|...|.+++..+|.++.+..+.+.|+.-.|+..+|++.++.+.+..|.... ...+.+++..+|
T Consensus 266 nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l---------~es~~~nL~tmy 333 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL---------HESVLFNLTTMY 333 (366)
T ss_pred cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch---------hhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987653 344566666655
No 190
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=3.6e-05 Score=78.05 Aligned_cols=235 Identities=16% Similarity=0.149 Sum_probs=160.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQA------IRA----EPKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a------~~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
|-.-|.++.+..++++|+++|++. +++ .|... ..-...|.-+...|+++.|+..|-++-- .
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~ 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------L 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------H
Confidence 344455566666677777766542 222 23221 2233457777888999999888866532 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (687)
...........++.+|+..++.+........ .|-.++.-|...|+|+.|.+.|.++-.. ......
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~~s~---yy~~iadhyan~~dfe~ae~lf~e~~~~------------~dai~m 800 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKTASG---YYGEIADHYANKGDFEIAEELFTEADLF------------KDAIDM 800 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhccccc---cchHHHHHhccchhHHHHHHHHHhcchh------------HHHHHH
Confidence 2333445567789999998887766554443 3557888999999999999998876332 224456
Q ss_pred HHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHH
Q 005632 254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA 333 (687)
Q Consensus 254 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 333 (687)
|-+.|++.+|..+-++.. .|......+...+.-+-+.|+|.+|.++| +....|+.+ ...|-+.|.++.-
T Consensus 801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly---iti~~p~~a------iqmydk~~~~ddm 869 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY---ITIGEPDKA------IQMYDKHGLDDDM 869 (1636)
T ss_pred HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee---EEccCchHH------HHHHHhhCcchHH
Confidence 788899999998888764 34456777888888889999999999888 333345432 2456667777776
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 334 IMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 334 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
+...++ ..|+. .+.+..++.-+...|+...|...|-++-+
T Consensus 870 irlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 870 IRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 665543 34443 46778899999999999999988876654
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.74 E-value=4.8e-07 Score=73.69 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---AL 104 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 104 (687)
......++..|...+..|+|++|++.|+.+....|. ...+...+|.+|+..+++++|+..+++-++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 345677899999999999999999999999998876 456889999999999999999999999999988765 45
Q ss_pred HHHHHHHHHHcCC
Q 005632 105 WKQLLTFAVQKGD 117 (687)
Q Consensus 105 ~~~la~~~~~~g~ 117 (687)
++..|.+++.+..
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.72 E-value=5.8e-07 Score=72.22 Aligned_cols=96 Identities=24% Similarity=0.222 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NVDATKTG 176 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l 176 (687)
.+++.+|.++-..|+.++|+..|++++...... ..+++.+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456778888888888888888888888865433 457778888888888888888888888888777 66777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005632 177 AQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~ 198 (687)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888887766654
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.6e-07 Score=77.17 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=64.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDS-----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
-|.-++..|+|.+|..-|..|+...|..+ ..+.+.|.+++.++.++.|+....++++++|.+..++...|.+|..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 35555666666666666666666655432 2344556666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
...+++|++.|.++++.+|....+.-..+++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 6666666666666666666655555444444
No 194
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.8e-05 Score=75.16 Aligned_cols=294 Identities=12% Similarity=0.143 Sum_probs=182.1
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHcCChHHHHHHHHHHhcc-----CC----
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAH-SALGNHKSAFDFYVIAAHL-----SP---- 99 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~-----~p---- 99 (687)
...+-..+...+...+..++|+...+.++.+-..+.++..+++..+.+. +..|.+.. ...++....+ .|
T Consensus 13 ~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 13 GEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVS 91 (696)
T ss_pred ccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchh
Confidence 3445566778899999999999999999999888887766666666554 44444332 2222222111 11
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 005632 100 ------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKL--- 165 (687)
Q Consensus 100 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 165 (687)
+....+++.|.+++....+.+|++.....+..-..- ..+-+..-..+....+.++|+.++.-.-++
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~ 171 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAE 171 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223456778888888888888888776665532111 112333344555566666776654332221
Q ss_pred ---CC--CC-------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005632 166 ---FP--DN-------------------------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI 215 (687)
Q Consensus 166 ---~p--~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~ 215 (687)
.+ ++ ..+.......+....+..-+....+.+..+..+.+. .+...+..
T Consensus 172 ~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~--~l~LKsq~ 249 (696)
T KOG2471|consen 172 KRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSM--ALLLKSQL 249 (696)
T ss_pred hhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcH--HHHHHHHH
Confidence 00 00 022333344556666666666666666666555544 56677888
Q ss_pred HHHcchHHHHHHHHHHHHHHhccC---CC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---------c------
Q 005632 216 LMENNAYEKTLQHIEHAQIVRFSG---KE--LPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---------A------ 275 (687)
Q Consensus 216 ~~~~~~~~~A~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~------ 275 (687)
++..|++.+|.+.+...--...+. .| ..-..+.++|.++++.|.|.-+..+|.+++... |
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 888888888887776542211111 01 123445778888888888888888888877411 0
Q ss_pred --hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Q 005632 276 --IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL 327 (687)
Q Consensus 276 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 327 (687)
....++.++.|..+...|++-.|.++|.++... ...+|.+|..+|.|+...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 124567778888888888888888888877766 566778888888877654
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.68 E-value=1.1e-08 Score=93.52 Aligned_cols=235 Identities=13% Similarity=-0.026 Sum_probs=138.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 185 (687)
-..|.-|+.+|.|++|+++|.+++..+|.++..+.+.+..|+++..+..|...+..++.++.....+|...+..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888888888888888888888888888888888888888888888888887778888888888888888
Q ss_pred hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC---chHH--HHHHHHHHHHHcCCH
Q 005632 186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE---LPLK--LKVKAGICYLRLGNM 260 (687)
Q Consensus 186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~--~~~~l~~~~~~~~~~ 260 (687)
..+|.+-++.++.+.|.+.+ . -..+.......++.-.. +..++..+ .... ..-..|..+...|.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E--L----kK~~a~i~Sl~E~~I~~----KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~ 250 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE--L----KKSLARINSLRERKIAT----KSTPGFTPARQGMIQILPIKKPGYKFSKKAMR 250 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH--H----HHHHHHhcchHhhhHHh----hcCCCCCccccchhhhccccCcchhhhhhhcc
Confidence 88888888888888887654 1 12222222222211111 10000000 0000 011234455556666
Q ss_pred HHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632 261 EKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 340 (687)
+.++.++.+-+..... +...... +..+.+..+++.++....+.... .|.........+.+-.-.|...++...++.+
T Consensus 251 ~~~i~~~~~~~A~~~~-~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~-~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 251 SVPVVDVVSPRATIDD-SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP-KPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred ccceeEeeccccccCc-cccCccc-HHHHHHHhhcchhHHHHHHhcCC-CCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 6666655553332211 1111111 44555555666666555554433 3333333333344444456666777777777
Q ss_pred HHhcCCCHHHHHH
Q 005632 341 LDRFEDNIDARLT 353 (687)
Q Consensus 341 l~~~p~~~~~~~~ 353 (687)
+.+.|.+..+...
T Consensus 328 ~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 328 VKVAPAVETPKET 340 (536)
T ss_pred eeeccccccchhh
Confidence 7777766444333
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.68 E-value=8.2e-08 Score=69.89 Aligned_cols=63 Identities=29% Similarity=0.487 Sum_probs=29.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444333
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.67 E-value=4.5e-06 Score=69.85 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR-AEPKDISLRIHLASFYVEIGDYEKAAESYEQ 161 (687)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 161 (687)
|.+....-..+.+...|. ..-.+.||..+...|++.+|...|++++. +.-+++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333333333333333 23355666666677777777777766665 3455666666666777777777777777776
Q ss_pred HHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Q 005632 162 IQKLFPD--NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (687)
Q Consensus 162 ~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 234 (687)
..+.+|. .++....+|+.+...|++.+|...|+.++...|+.. .....+..+..+|+.+++..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6666553 355566666667777777777777777666666543 344556666666666666555554443
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=8.9e-07 Score=80.18 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQ 178 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~ 178 (687)
.+..|.-++..|+|..|...|...++..|++ +++++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5555666666666666666666666666654 4566666666666666666666666666665554 466666666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 179 LFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+...+|+.++|...|+++++..|+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 666666666666666666666666543
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.64 E-value=3.6e-05 Score=69.23 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHH
Q 005632 135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVID 210 (687)
Q Consensus 135 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~ 210 (687)
.+..++.-|...+..|++++|+..|+.+....|..+ .+...++..+++.+++++|+...++.+...|.+++. .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 355677777777777888888888877777766543 567777777788888888888888888887777653 2445
Q ss_pred HHHHHHHHc--------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHH
Q 005632 211 LLVAILMEN--------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLI 282 (687)
Q Consensus 211 ~la~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 282 (687)
..|.++... .-..+|+..|+..+..+|.+ +....+ ..-+..+.. .-...-
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS-~Ya~dA-----------------~~~i~~~~d----~LA~~E 170 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS-RYAPDA-----------------KARIVKLND----ALAGHE 170 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC-cchhhH-----------------HHHHHHHHH----HHHHHH
Confidence 555554332 22345666666666664321 111111 111111100 122233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhccCCC---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632 283 TEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (687)
Q Consensus 283 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (687)
..+|..|.+.|.+..|+..++.+++. .|+ ...++..+..+|..+|-.++|...-.-+-...|++
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 45677777777777777777777765 332 44566677777777777777766555444444444
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.61 E-value=3e-07 Score=67.98 Aligned_cols=62 Identities=31% Similarity=0.492 Sum_probs=27.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
+|...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444444444444444444444444444444444444444444444444444444444433
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=3.1e-07 Score=67.95 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=37.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH
Q 005632 42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (687)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 106 (687)
..++..++|++|++.+++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555554433
No 202
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.55 E-value=0.00053 Score=67.69 Aligned_cols=354 Identities=10% Similarity=0.026 Sum_probs=208.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 58 KEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS 137 (687)
Q Consensus 58 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 137 (687)
++-++.+|.+.++|+.|..-+..+ -+++..+.|++.+...|..+.+|.......+...+|+.-..+|.+++...- +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 677899999999999999877666 999999999999999999999999999999999999999999999987432 344
Q ss_pred HHHH-HHHHHHHcCCHHHHHHH----HHHHHHh---CCCCHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHhC
Q 005632 138 LRIH-LASFYVEIGDYEKAAES----YEQIQKL---FPDNVDATKTGAQLF---------LKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 138 ~~~~-la~~~~~~g~~~~A~~~----~~~~~~~---~p~~~~~~~~la~~~---------~~~g~~~~A~~~~~~~~~~~ 200 (687)
.|.. +..+-...|+...+... |+-++.. ++....+|...+..+ ..+.+.+.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 4433 33333444555444444 4444432 455566777666554 23345666777888887643
Q ss_pred CCCCcHHHHHH-----------HH--HHHHHcchHHHHHHHHHHHHHHhcc-----------------------------
Q 005632 201 PSDADLSVIDL-----------LV--AILMENNAYEKTLQHIEHAQIVRFS----------------------------- 238 (687)
Q Consensus 201 p~~~~~~~~~~-----------la--~~~~~~~~~~~A~~~~~~~~~~~~~----------------------------- 238 (687)
-.+.+ ..|.. .| .+......|..|...+++......+
T Consensus 168 m~nlE-kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 168 MHNLE-KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred cccHH-HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 33322 12211 11 1223345566666666655443110
Q ss_pred --CCC-------------------------chHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhCchh
Q 005632 239 --GKE-------------------------LPLKLKVKAGICYLRLGN--------------MEKAEILFADLQWKNAID 277 (687)
Q Consensus 239 --~~~-------------------------~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~ 277 (687)
.+| ..+.+|+..+..+...++ .+++..++++.+......
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 000 111222222222222222 344445555544433222
Q ss_pred hHHHHHHHHHHHHhcCC---hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 005632 278 HADLITEVADTLMSLGH---SNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTL 354 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 354 (687)
+...++.++..-...-+ ++..-..+++++.....+-.-+|..+-..-.+..-...|...|.++-+..-...+++..-
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 33333333332222222 444455555555442222333344444444444556677777777765433333344333
Q ss_pred HH-HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Q 005632 355 AS-LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (687)
Q Consensus 355 a~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 426 (687)
|. -|...++..-|..+|+--+..+++++. .-......+...|+-..+...|++++...+.
T Consensus 407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~------------yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 407 ALMEYYCSKDKETAFRIFELGLKKFGDSPE------------YVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCChH------------HHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 32 244578888899999988888887763 5566667778888888898888888877433
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=4.3e-06 Score=68.21 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI 140 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 140 (687)
.+..++.-|...+..|+|.+|++.|+.+....|. ...+.+.++.+|+..|++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3456777777777777777777777777776654 345667777777777777777777777777777664 3566
Q ss_pred HHHHHHHHcCC
Q 005632 141 HLASFYVEIGD 151 (687)
Q Consensus 141 ~la~~~~~~g~ 151 (687)
..|.++..+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 66666666544
No 204
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.3e-05 Score=66.75 Aligned_cols=187 Identities=17% Similarity=0.131 Sum_probs=132.7
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC-chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC
Q 005632 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS-----PN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD 101 (687)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 101 (687)
++......-+..-|+.|--..+++.|=..|-++-+.. .+ .+..|...+.|| +.++..+|..++++++++..+-
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh
Confidence 3444444444455677777888999988888886542 12 344566666665 4559999999999999886543
Q ss_pred HH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 102 SA------LWKQLLTFAVQK-GDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 102 ~~------~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
.. .+..+|.+|... .++++|+.+|+++-+-.... ...+...+..-...++|.+|+..|++.....-+
T Consensus 107 Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 107 GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 32 355788888766 89999999999988754332 234566677778889999999999998876655
Q ss_pred CH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005632 169 NV-------DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI 215 (687)
Q Consensus 169 ~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~ 215 (687)
++ +.++.-|.+++-..+.-.+...+++..+.+|...+.+-...+..+
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 54 345566777787788888889999999999987764433334333
No 205
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.9e-06 Score=72.88 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
-+-.-|.-++..|+|++|...|..++...|..+ ..+.+.|.+.+.++.++.|+..+.++++++|.+..++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344557778888999999999999998888654 357778888899999999999999999999988888888899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 179 LFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+|.++..+++|+.-|.+++..+|....
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 999999999999999999998888764
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00083 Score=71.17 Aligned_cols=272 Identities=16% Similarity=0.101 Sum_probs=187.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
|......+-|++|..+|++. .-+..+...+ ....+..+.|.++.++. +.+..|..+|.+....|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 44555555666666666542 1122222211 12345666666665554 557889999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|++.|-++ +++..+.....+..+.|.|++-+.++..+.+... .+.+-..+...|.+.++..+-.+.+ ..
T Consensus 1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AG 1191 (1666)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cC
Confidence 99888775 6777888888888999999999998888776532 2334445566677777776655443 24
Q ss_pred CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHH
Q 005632 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD 280 (687)
Q Consensus 201 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 280 (687)
|+... ....|.-++..|.|+.|.-.|..+-. +..++..+..+|+|..|....+++ .+..
T Consensus 1192 pN~A~---i~~vGdrcf~~~~y~aAkl~y~~vSN------------~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1192 PNVAN---IQQVGDRCFEEKMYEAAKLLYSNVSN------------FAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred CCchh---HHHHhHHHhhhhhhHHHHHHHHHhhh------------HHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 55543 55788888899999988877765432 456888888999999999988886 3667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 005632 281 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360 (687)
Q Consensus 281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 360 (687)
.|...+.++...+.+.-|.-+= ..---.++-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCG-----L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICG-----LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcC-----ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 7777787887777776554322 11112344455667778888888888888888888777777777777777754
Q ss_pred c
Q 005632 361 E 361 (687)
Q Consensus 361 ~ 361 (687)
-
T Consensus 1326 y 1326 (1666)
T KOG0985|consen 1326 Y 1326 (1666)
T ss_pred c
Confidence 3
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=8.2e-05 Score=66.19 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=119.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh------------CCC---------chHHHHHHHHHHHHcCChHHHHHHHHHHhccC-
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRL------------SPN---------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLS- 98 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~------------~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 98 (687)
|......|+..+.+.-+...... .|+ -..+.+.+..++.-.|.|.-....+.++++.+
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 56666677777776655544321 111 12245666777777888888888888888877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
|.++.....+|.+.++.|+.+.|..+|++.-+.. .....+..+.+.++.-.+++.+|...|.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 5567777788888888888888888888554422 2234566777778888888888888888888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
..+.|.|+...|+..+|++.++.++.+.|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 88888888888888888888888888887654
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.35 E-value=2.6e-05 Score=61.15 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHHHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTFA 112 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 112 (687)
+-.+|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|++.+.+++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888888999999999999999999999999999999999999999999999998876432 34577888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEP 133 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p 133 (687)
...|+-+.|..-|+.+.++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 888888888888888877653
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.34 E-value=8.6e-06 Score=79.62 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=48.5
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRA 131 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~ 131 (687)
.+|+++.+++++|.+|+..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667777777777777777777777777777777776643 777777777777777777777777765
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.29 E-value=4.4e-06 Score=81.59 Aligned_cols=68 Identities=16% Similarity=0.040 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL---RIHLASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
+|+++.+++++|.+|+..|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777777777777777777777777777777777777644 777777777777777777777777775
No 211
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.28 E-value=0.00011 Score=72.79 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=85.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133 (687)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 133 (687)
++..+++.+|.+...+..-+.....+|+..+|..++..++-..|.. ..++..+|.++.+.|...+|--.+..++.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3444555566554444444444445789999999999988877654 34577889999999999888888888887766
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
.-..-++.++.++...+++......|..+.+..|..
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 666668889999999999999888998888887764
No 212
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.4e-06 Score=72.98 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=93.8
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 108 (687)
..++.+.++=.+|+.++....|+.|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+
T Consensus 5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 45667777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRA 131 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~ 131 (687)
|.+......|++|+..+.++..+
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999998664
No 213
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00039 Score=64.27 Aligned_cols=161 Identities=14% Similarity=0.006 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHH
Q 005632 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDI---SLRIHLASFYV 147 (687)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~---~~~~~la~~~~ 147 (687)
..-+.+....|++.+|-..+++.++-.|.+.-++..--.+++..|+...-...+++++.. +|+.| .+.-.++..+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 333445556666666666667777666766666666666666667666666666666655 44442 33344555666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcchHHHH
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD--LSVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~la~~~~~~~~~~~A 225 (687)
..|-|++|.+.-+++++++|.+..+....+.++...|++.++.+...+--..-....- ..-|...+.++...+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 6677777777777777777776666666777777777777776665543222111000 01133455566666677777
Q ss_pred HHHHHHH
Q 005632 226 LQHIEHA 232 (687)
Q Consensus 226 ~~~~~~~ 232 (687)
++.|.+-
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 7766653
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.25 E-value=9.8e-06 Score=68.24 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh----------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH----------KSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
|+.|.+.++.....+|.+++.++.-|.++..+.++ ++|+.-|++++.++|+..+++..+|.++...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 56788888888888888888888888877765433 3455555555555566555555555555443
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.00014 Score=66.57 Aligned_cols=162 Identities=20% Similarity=0.191 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-HHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-LWKQLLT 110 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~ 110 (687)
+.....+..+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+...-........ .......
T Consensus 132 ~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 132 AEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred hHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 355566778888899999999999999999999999999999999999999999988888764332222111 1111112
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~ 188 (687)
.+.+.....+. ..+++.+..+|++.++.+.+|..+...|+++.|.+.+-..++.+.. +..+...+-.++...|.-+.
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 22222222222 2345556678888888888888888888888888888877776543 34555555555555554443
Q ss_pred HHHHHH
Q 005632 189 SIGILE 194 (687)
Q Consensus 189 A~~~~~ 194 (687)
+...++
T Consensus 291 ~~~~~R 296 (304)
T COG3118 291 LVLAYR 296 (304)
T ss_pred HHHHHH
Confidence 433333
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=2.1e-06 Score=64.36 Aligned_cols=63 Identities=25% Similarity=0.412 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 130 (687)
..++..+|.+|...|++++|+.+|++++++. |....++..+|.++...|++++|+.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555554331 11123344444444444444444444444443
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=7.4e-05 Score=58.68 Aligned_cols=93 Identities=16% Similarity=0.277 Sum_probs=49.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVE 148 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~ 148 (687)
..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++-+++++++..+.. .++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555433221 234445555555
Q ss_pred cCCHHHHHHHHHHHHHh
Q 005632 149 IGDYEKAAESYEQIQKL 165 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~ 165 (687)
+|+.+.|...|+.+.++
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 55555555555555444
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.20 E-value=0.0099 Score=60.25 Aligned_cols=366 Identities=13% Similarity=0.034 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 005632 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAI 129 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~ 129 (687)
+.+...|...|...|-.-..|...|..-.+.|..+.+...|++++.--|-....|..+ +.+-...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5566677777888998888999999999999999999999999999999888888765 444446678888888899998
Q ss_pred HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHH--
Q 005632 130 RAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC------GQTARSIGILEEYLK-- 198 (687)
Q Consensus 130 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~-- 198 (687)
.....+ ...|-........++++..-...|++.++.--.....++..-.-+... -..+++...-.....
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 865543 345666666667888899999999998875332222222111111111 122222222111111
Q ss_pred -----------------h--CCCCCcHHHHHHHH-------HHHHHcchHHHHHHHHHHHHHH----hccCCCchHHHHH
Q 005632 199 -----------------V--HPSDADLSVIDLLV-------AILMENNAYEKTLQHIEHAQIV----RFSGKELPLKLKV 248 (687)
Q Consensus 199 -----------------~--~p~~~~~~~~~~la-------~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~ 248 (687)
. .|..........+. .++.......+.+..++..+.. ..+..+.....|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 0 11111000111111 1222223333444444444433 0122334456677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh
Q 005632 249 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK 328 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 328 (687)
.........|+++...-.+++++.... ...+.|...+......|+.+-|-..+.++.+...+..+.+...-+..-...|
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 778888899999999999999876655 4889999999999999999999999998888777889999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH---HhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH-
Q 005632 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI---TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY- 404 (687)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~- 404 (687)
++..|...++++.+..|+...+-...+....+.|+.+.+. +++........... .....+...++..
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~---------i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG---------ILEKLYVKFARLRY 451 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc---------hhHHHHHHHHHHHH
Confidence 9999999999999988999988888888899999999888 44444333222221 1223445555543
Q ss_pred HHcCCchHHHHHHHHHHHHhhh
Q 005632 405 RAKGMPEDFVDAIFPLVCESLC 426 (687)
Q Consensus 405 ~~~g~~~~A~~~~~~~~~~~~~ 426 (687)
.-.++.+.|...+.+++...+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPD 473 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCc
Confidence 4556777787777777765544
No 219
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.18 E-value=1.9e-05 Score=66.51 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD----------TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-- 151 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-- 151 (687)
|+.|.+.++.....+|.+++.+...|.++..+.+ +++|+.-|+.++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4567777777777777777777777776655433 4455666666666677776777666666655432
Q ss_pred ---------HHHHHHHHHHHHHhCCCCH
Q 005632 152 ---------YEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 152 ---------~~~A~~~~~~~~~~~p~~~ 170 (687)
|++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4444444555555555443
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.17 E-value=0.00036 Score=68.62 Aligned_cols=163 Identities=16% Similarity=0.243 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC--------------------
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-------------------- 100 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------------------- 100 (687)
.....+..+.+.-++...++++++|+.+++|..++.- ......+|..+|+++++....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 4445788999999999999999999999999988863 233467777777777654210
Q ss_pred -C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHH
Q 005632 101 -D----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKL-FPDNVDA 172 (687)
Q Consensus 101 -~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 172 (687)
+ ..+...+|.|..+.|+.++|++.++..++.+|. +..++.++..++...+.|.++...+.+.-+. -|+....
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 0 123457888999999999999999999887775 4567888999999999999998888886443 2455555
Q ss_pred HHHHHHHHHH-cCC---------------hHHHHHHHHHHHHhCCCCCc
Q 005632 173 TKTGAQLFLK-CGQ---------------TARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 173 ~~~la~~~~~-~g~---------------~~~A~~~~~~~~~~~p~~~~ 205 (687)
.+..+.+..+ .++ -..|.+.+.++++.+|.-+.
T Consensus 333 ~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 333 CYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 5544444322 111 13466788888888887664
No 221
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0031 Score=55.49 Aligned_cols=86 Identities=24% Similarity=0.277 Sum_probs=42.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDIS------LRIHLASFYVEI-GDYEKAAESYEQIQKLFPDN------VDATKTGAQLF 180 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~ 180 (687)
+.++..+|+.++++++++..+-.. .+..+|.+|... .++++|+.+|+++-+..... ...+...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 334666666666666665433221 233455555433 55555555555555443221 12333444444
Q ss_pred HHcCChHHHHHHHHHHHHh
Q 005632 181 LKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~ 199 (687)
...++|.+|+..|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 222
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.015 Score=59.77 Aligned_cols=334 Identities=14% Similarity=0.150 Sum_probs=164.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc--------------------cCCCCHH
Q 005632 44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH--------------------LSPKDSA 103 (687)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~ 103 (687)
....|+|+.|...++. ++..|+....|..++...+..|+.--|..+|...-. ...+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 4568999999887765 567787777888888888888777777666643211 1111122
Q ss_pred HHHHHHH-------------HHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005632 104 LWKQLLT-------------FAVQKGDTAQAMYYIRQAIRA-----------EPKDISLRIHLASFYVEIGDYEKAAESY 159 (687)
Q Consensus 104 ~~~~la~-------------~~~~~g~~~~A~~~~~~a~~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 159 (687)
.|...+. ++..++..++|+-.|+..-+- .|.........-..+...|+-++|-+.
T Consensus 533 fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el- 611 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL- 611 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh-
Confidence 2222232 334455555555555443221 111111111122222233333222211
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------CcHHHHHHHHHHHHHcchHHHHHHHH
Q 005632 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD----------ADLSVIDLLVAILMENNAYEKTLQHI 229 (687)
Q Consensus 160 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----------~~~~~~~~la~~~~~~~~~~~A~~~~ 229 (687)
...+.+.+ ....+|.+.|.+..|......--.+..+. .....|...|.++.+..++++|+++|
T Consensus 612 ------k~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~f 684 (1636)
T KOG3616|consen 612 ------KESDGDGL-AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECF 684 (1636)
T ss_pred ------ccccCccH-HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHH
Confidence 11111111 12234555555555443221100000000 00124566777777788888888777
Q ss_pred HH------HHHHhccCCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632 230 EH------AQIVRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY 302 (687)
Q Consensus 230 ~~------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 302 (687)
++ ++++..-..|. -..+--.-|..+...|+++.|+..|-.+-. ......+......+.+|+.++
T Consensus 685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 64 33331111221 122333456666777777777777765421 111223334455667777666
Q ss_pred HHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632 303 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (687)
Q Consensus 303 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (687)
+.+... ......|-.++.-|...|+++.|.+.|.++- ....-..+|.+.|+++.|.++-++........
T Consensus 756 dniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e~t~- 824 (1636)
T KOG3616|consen 756 DNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATI- 824 (1636)
T ss_pred HHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCchhHH-
Confidence 655432 2233344456666667777777777666541 11223455666666666666655544322211
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHH
Q 005632 383 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIF 418 (687)
Q Consensus 383 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 418 (687)
..+...+.-+...|++.+|...|.
T Consensus 825 ------------~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 825 ------------SLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred ------------HHHHHhHHhHHhhcchhhhhheeE
Confidence 244555555566666666655443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.10 E-value=6e-06 Score=61.89 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA---EP-K---DISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
+...++..+|.+|...|++++|+.+|++++++ .+ + ...++..+|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33456667777777777777777777777653 11 1 1345666677777777777777777666654
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00031 Score=64.96 Aligned_cols=159 Identities=12% Similarity=0.002 Sum_probs=94.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcC
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-FPDN---VDATKTGAQLFLKCG 184 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~---~~~~~~la~~~~~~g 184 (687)
+.+.+..|++.+|-...++.++..|.+.-++..--.+++..|+...-...+++++-. +|+- ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 444556667777777777777777777666666666666777777766677766655 4443 233334555666677
Q ss_pred ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 264 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 264 (687)
-|++|.+..+++++++|.+.- +...++.++...|++.++.++..+.-.......-....-+...+.++...+.|+.|+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccCCCcchH--HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 777777777777777766643 455666677777777777766665433211111111122334455555556666666
Q ss_pred HHHHH
Q 005632 265 ILFAD 269 (687)
Q Consensus 265 ~~~~~ 269 (687)
.+|.+
T Consensus 268 eIyD~ 272 (491)
T KOG2610|consen 268 EIYDR 272 (491)
T ss_pred HHHHH
Confidence 66654
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.06 E-value=1e-05 Score=52.32 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 356 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 356 (687)
|.++..+|.+|...|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578889999999999999999999999999999999988875
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00013 Score=69.97 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
|..+.....+.+..+.|...|.++....+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 33333444444444455555555543333344444444444333 23333355555555555555544444444444455
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632 150 GDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 202 (687)
|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|+
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 555555555555444433322 23334444444444444444444444444443
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.06 E-value=0.0033 Score=64.99 Aligned_cols=180 Identities=18% Similarity=0.124 Sum_probs=116.8
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHH-----HHHHH----HcCCHHH
Q 005632 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA-----GICYL----RLGNMEK 262 (687)
Q Consensus 192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~----~~~~~~~ 262 (687)
.|.-++..-|... ..+..+.--.|+-+.++..+.++.+..+ -....-.+..+ ...+. .....+.
T Consensus 179 ~f~L~lSlLPp~~-----~kll~~vGF~gdR~~GL~~L~~~~~~~~--i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 179 LFNLVLSLLPPKV-----LKLLSFVGFSGDRELGLRLLWEASKSEN--IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHhCCHHH-----HHHHhhcCcCCcHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 4555556655432 2344444455777777777777765311 11111111111 11111 2456778
Q ss_pred HHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc---CCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005632 263 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA---GTDNGYLYLKLAECYLSLKERAHAIMFFYK 339 (687)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 339 (687)
|..++.......|. ..-..+..|+++...|+.++|++.|++++... .+-..-.++.++.++..+++|++|..++.+
T Consensus 252 a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 252 AEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 88888888888874 77777888888888888888888888766431 122445678888888888999999988888
Q ss_pred HHHhcCCCHH-HHHHHHHHHHHcCCH-------HHHHHhcCCCCcCCc
Q 005632 340 ALDRFEDNID-ARLTLASLLLEEAKE-------EEAITLLSPPKDLDS 379 (687)
Q Consensus 340 al~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~ 379 (687)
..+.+.-... ..+..|.++...|+. ++|.+++.++-....
T Consensus 331 L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 331 LLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 8887655433 335567788888888 888888887655443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0012 Score=58.45 Aligned_cols=166 Identities=8% Similarity=0.098 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-----PKDISL 138 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~~~~~ 138 (687)
.|..-+.+|....+|++|..++.++.+-..++. .++-..+.+......+.++..+++++..+. |+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 344445556666666666666666664332221 223334444555556666666666665532 222222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCcHHH
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTARSIGILEEYLKV----HPSDADLSV 208 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~ 208 (687)
-...+--....-++++|++.|++++.+...+ .+.+...++++.+...+++|-..+.+-... ..-......
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~ 192 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA 192 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence 3333333445566777777777776654332 234455666777777777776665553322 111111123
Q ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 209 IDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 209 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
+.....++.-..+|..|..+++...++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 334445555556777777777766555
No 229
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.04 E-value=0.0029 Score=67.08 Aligned_cols=279 Identities=16% Similarity=0.089 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-----CChHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcC---
Q 005632 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSAL-----GNHKSAFDFYVIAAHL-----SPKDSALWKQLLTFAVQKG--- 116 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 116 (687)
...|..+++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888887665 4678888889888764 5899999999988761 1124557788899988753
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChH
Q 005632 117 --DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC----GQTA 187 (687)
Q Consensus 117 --~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~ 187 (687)
++..|+.+|.++.... ++.+.+.+|.++.... ++..|.++|..+... .+..+.+.++.+|..- -+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 6788999999988764 6677888888887765 578999999988765 5778888888888653 4678
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc----CCHHH
Q 005632 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL----GNMEK 262 (687)
Q Consensus 188 ~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 262 (687)
.|..++.++.+..+-. +...++.++... +.++.+.-.+......-..................... .+...
T Consensus 382 ~A~~~~k~aA~~g~~~----A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPS----AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHccChh----hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 8999999998877322 233444444332 66666666665554441100111111111111111111 13344
Q ss_pred HHHHHHHHhhhCchhhHHHHHHHHHHHHhc----CChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh---hcHHHHHH
Q 005632 263 AEILFADLQWKNAIDHADLITEVADTLMSL----GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL---KERAHAIM 335 (687)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~ 335 (687)
+...+.++... .+..+...++.+|... .+++.|...|..+... . +...+++|.++..- .....|..
T Consensus 458 ~~~~~~~a~~~---g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--~--~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 458 AFSLYSRAAAQ---GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--G--AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred HHHHHHHHHhc---cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--h--hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 44445444322 3556666666666554 2577777777766644 2 66777777776641 11566777
Q ss_pred HHHHHHHhcC
Q 005632 336 FFYKALDRFE 345 (687)
Q Consensus 336 ~~~~al~~~p 345 (687)
+|.++.+.+.
T Consensus 531 ~~~~~~~~~~ 540 (552)
T KOG1550|consen 531 YYDQASEEDS 540 (552)
T ss_pred HHHHHHhcCc
Confidence 7777665544
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.022 Score=58.38 Aligned_cols=239 Identities=17% Similarity=0.145 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
.++..|..+|......-.++.|...|-+.-.. |.-. .--...+.+-.--|++++|.+.|..+-+. +
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr---D- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---D- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh---h-
Confidence 35788999988888777777777776655321 1110 00123455555668899998888665332 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA 250 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 250 (687)
....++...|+|-...++++..-.-..+.....++..+|..+.....+++|.++|...-.. -..
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~ 828 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQ 828 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhH
Confidence 2234566778887777666543222222222357889999999999999999999886543 246
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH
Q 005632 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 330 (687)
Q Consensus 251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 330 (687)
..+++...++++-..+.+.+ | ++...+-.+|..+...|.-++|.+.|-+.. .|..+ ......++++
T Consensus 829 ~ecly~le~f~~LE~la~~L----p-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~pkaA------v~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL----P-EDSELLPVMADMFTSVGMCDQAVEAYLRRS---LPKAA------VHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc----C-cccchHHHHHHHHHhhchHHHHHHHHHhcc---CcHHH------HHHHHHHHHH
Confidence 67777777777655554444 4 477788899999999999999999884322 33211 1245567788
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 005632 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK 375 (687)
Q Consensus 331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 375 (687)
.+|.+..++.- -|.-.......+.-+...++.-+|++...++-
T Consensus 895 ~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka~ 937 (1189)
T KOG2041|consen 895 GEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKAG 937 (1189)
T ss_pred HHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhcc
Confidence 88888766531 23323333334555667788888888877664
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.002 Score=57.08 Aligned_cols=119 Identities=16% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHcCCHHHHHHHHHHHhhhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-----cCCCcHHHHHHHHHHH
Q 005632 255 LRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLAECY 324 (687)
Q Consensus 255 ~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~ 324 (687)
....++++|+++|++.+..... ...+.+...++++.....+.+|-..+.+-... ..+.....+.....+|
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 3445666777777765432111 13345566677888888888887777653322 1233444566666677
Q ss_pred HHhhcHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 005632 325 LSLKERAHAIMFFYKALDR----FEDNIDARLTLASLLLEEAKEEEAITLLSPP 374 (687)
Q Consensus 325 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 374 (687)
+...+|..|..+++...++ .|++..+..+|-..| ..|+.++..+++...
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSP 253 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcCh
Confidence 7778999999999987665 344555666666555 678888888887643
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.00012 Score=70.05 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE-IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
+|..+.....+.+..+.|..+|.++.+..+-...+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577777778888889999999999986666677888888988666 5666669999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632 183 CGQTARSIGILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (687)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 237 (687)
.|+.+.|..+|++++..-|... ...+|......-...|+.+....+.+++.+.++
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998876665 445788888888888999988888888888744
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.01 E-value=0.00073 Score=66.50 Aligned_cols=195 Identities=12% Similarity=0.082 Sum_probs=121.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 221 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~ 221 (687)
+..-..+..++..-++.-.++++++|+..+++..|+.-. ..-..+|..+++++++....... ........|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg------~s~~~~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLG------KSQFLQHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhc------hhhhhhcccc
Confidence 334444556666667777777777777766666665421 22355666666666554322111 0000011111
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-hhHHHHHHHHHHHHhcCChHHHHH
Q 005632 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
.-+. .. ..+......+...++.|..+.|+.++|++.++.+++..|. +...+..++..++...+.|.++..
T Consensus 246 ~~e~-------~~--~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 246 FWEA-------WH--RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhh-------hh--ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 1110 00 0011223455677899999999999999999999887765 467789999999999999999999
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHH-hhc---------------HHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 301 YYHFLETNAGTDNGYLYLKLAECYLS-LKE---------------RAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
++.+.-+..-|..+...+..|.+-.+ .++ -..|++.+.+|++.+|.-+..++.
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 99887655456677666666554332 122 134678899999999988765543
No 234
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6.7e-05 Score=65.83 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=73.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 187 (687)
-|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+....++++++.|+....++.+|........|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35556666778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHh
Q 005632 188 RSIGILEEYLKV 199 (687)
Q Consensus 188 ~A~~~~~~~~~~ 199 (687)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887554
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.00 E-value=1.4e-05 Score=51.62 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
+..+|..|...|++++|+..|+++++.+|+++.++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33344444444444444444444444444444444333
No 236
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.95 E-value=0.03 Score=56.89 Aligned_cols=315 Identities=12% Similarity=0.068 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 005632 85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY-VEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~ 163 (687)
+.+...|...+...|.....|...|..-.+.|..+.+...|++++.--|.+...|..+-... ...|+.+.-...|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 55666677777778888888999999999999999999999999998888877776644333 45677777788888888
Q ss_pred HhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC
Q 005632 164 KLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK 240 (687)
Q Consensus 164 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 240 (687)
.....+ ...|-........++++..-..+|++.++.--.... .++..-.-+.... ...-+-.++++.+...+..
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--~~f~~f~~~l~~~-~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--RHFDRFKQLLNQN-EEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--HHHHHHHHHHhcC-ChhhhcCHHHHHHHhhhHH
Confidence 776543 345555556667778888888888888775322211 1111111111110 0111111111111100000
Q ss_pred -----C---chHHHHH-HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc--
Q 005632 241 -----E---LPLKLKV-KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-- 309 (687)
Q Consensus 241 -----~---~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 309 (687)
+ .....+- ..-.+--..+..+++...+.+ .....=.++.......+.+-.++..+...
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~-----------~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYf 287 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKR-----------IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYF 287 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHH-----------HHHHHHHHHHhhHhHHHHHHhhhhhcccccc
Confidence 0 0000000 000000000111111111111 11111223333344555555666555431
Q ss_pred -----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCC
Q 005632 310 -----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS 384 (687)
Q Consensus 310 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 384 (687)
.+.....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.......
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~- 366 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP- 366 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc-
Confidence 12234566667777788999999999999999888888999999999999999999999888888776554432
Q ss_pred CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
.+...-+.+-...|++..|...++.+.++.
T Consensus 367 ----------~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 367 ----------IIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred ----------HHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 467777788888999999999888888765
No 237
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.95 E-value=1.7e-05 Score=77.24 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
+=.+|..++..+.|+.|+..|.++++++|+++..+...+..+.+.+++..|+..+.++++.+|....+|+..|.+.+..+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34567888888899999999999999999888888888888899999999999999999999988888888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+.+|...|++...+.|+++.+...+..+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999998888776665553
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.92 E-value=0.0044 Score=60.43 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHL----SPKDSALWKQLLTFAVQ---KGDTAQAMYYIRQ-AIRAEPKDISL 138 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-a~~~~p~~~~~ 138 (687)
.+++...+-.+|....+|+.-+...+..-.+ -++.+.+...+|-++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3445556666666777777777666665554 34455556666666666 6777777777766 33344556666
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 139 RIHLASFYVEI---------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (687)
Q Consensus 139 ~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 185 (687)
+..+|.+|-.. ...++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 66666666431 23455666666666665432 223344444444443
No 239
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.042 Score=59.03 Aligned_cols=323 Identities=16% Similarity=0.119 Sum_probs=169.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 117 (687)
...++..+-..+-++++++++-.+.- +......+..... .-+.....++..+.-..+.. .+|.+....+-
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~------~ia~iai~~~L 1063 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAP------DIAEIAIENQL 1063 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCch------hHHHHHhhhhH
Confidence 44566677777888888887643321 2222222222222 23444555555554333321 24555566666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
|++|...|++.- -+..+... +....+..+.|.++-+++ +.+.+|..+|......|...+|++.|-++
T Consensus 1064 yEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 777777666531 12222111 122344555555555443 44566777777777777777777666543
Q ss_pred HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh
Q 005632 198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277 (687)
Q Consensus 198 ~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 277 (687)
+++. .+.....+..+.|.|++-+.++.-+.+... .+.+-..+..+|.+.++..+-...+ .. |
T Consensus 1131 ----dDps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-----E~~id~eLi~AyAkt~rl~elE~fi----~g-p-- 1192 (1666)
T KOG0985|consen 1131 ----DDPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVR-----EPYIDSELIFAYAKTNRLTELEEFI----AG-P-- 1192 (1666)
T ss_pred ----CCcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-----CccchHHHHHHHHHhchHHHHHHHh----cC-C--
Confidence 2222 355666666667777777666666655421 1112223334444455443322221 11 1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------------
Q 005632 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR-------------- 343 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------- 343 (687)
+..-....|.-++..|.|+.|.-+|..+. -|..++..+..+|+|..|....+++-..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 22233445555555555555555543221 2344555555555555555554443211
Q ss_pred -------cC----CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchH
Q 005632 344 -------FE----DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPED 412 (687)
Q Consensus 344 -------~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 412 (687)
.. -+.+-+-.+...|...|-+++-+.+++.++-...... ..+..||.+|.+ =++++
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM------------gmfTELaiLYsk-ykp~k 1330 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM------------GMFTELAILYSK-YKPEK 1330 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH------------HHHHHHHHHHHh-cCHHH
Confidence 00 1244556688888999999999999998887766543 256667776643 34666
Q ss_pred HHHHHHHHHHH
Q 005632 413 FVDAIFPLVCE 423 (687)
Q Consensus 413 A~~~~~~~~~~ 423 (687)
-.+.++-.+.+
T Consensus 1331 m~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1331 MMEHLKLFWSR 1341 (1666)
T ss_pred HHHHHHHHHHh
Confidence 66666655544
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00099 Score=61.20 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFY 146 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~ 146 (687)
.+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....... .........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 345566677788899999999999999999999999999999999999999999888876443322221 1111112333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~ 220 (687)
.+.....+. ..+++-+..+|++.++.+.+|..+...|+.++|.+.+-..++.+-...+..+...+..++...|
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333322 2345566779999999999999999999999999999999888765544334444555554444
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.88 E-value=1.8e-05 Score=47.41 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632 336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 369 (687)
Q Consensus 336 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 369 (687)
+|+++++++|+++.+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.88 E-value=0.03 Score=54.49 Aligned_cols=377 Identities=12% Similarity=0.056 Sum_probs=221.6
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
...|.++..+|++...+-.+|.+++-.+.+++...-.|-.+.+|...-..-+..+++......|.+.+...-+ .+.|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~l 114 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWML 114 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHH
Confidence 4557788889999999999999999999999998888887777776666666678888888888888764432 455544
Q ss_pred HHHHHHHcC-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCC
Q 005632 108 LLTFAVQKG-----D----TAQAMYYIRQAIRAEPKDISLRIHLASFYVE---------IGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 108 la~~~~~~g-----~----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~p~~ 169 (687)
.-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+.. +.+.+.-...|.+++..--++
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 433333322 1 2233333333334567777778777766543 334566677788887653333
Q ss_pred HH-HHHHHHH---------HHH----HcCChHHHHHHHHHHHHhC-------CCCC------------c-----------
Q 005632 170 VD-ATKTGAQ---------LFL----KCGQTARSIGILEEYLKVH-------PSDA------------D----------- 205 (687)
Q Consensus 170 ~~-~~~~la~---------~~~----~~g~~~~A~~~~~~~~~~~-------p~~~------------~----------- 205 (687)
.+ .|...-. .-- ..--|-.|...+++...+. |.+. .
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 21 1111100 000 0111334444444443321 1000 0
Q ss_pred ---------------------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632 206 ---------------------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (687)
Q Consensus 206 ---------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (687)
.++|+.........++-+.|+....+.... .+.+.+.++.+|....
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-------spsL~~~lse~yel~n 347 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-------SPSLTMFLSEYYELVN 347 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-------CCchheeHHHHHhhcc
Confidence 012333333334445555666555555433 3336667777777766
Q ss_pred CHHHHHHHHHHHhhhC------------------chhhHH-----------HHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 005632 259 NMEKAEILFADLQWKN------------------AIDHAD-----------LITEVADTLMSLGHSNSALKYYHFLETNA 309 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~------------------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 309 (687)
+-+....+|+++...- +...++ ++........+..-.+.|..+|.++.+..
T Consensus 348 d~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred cHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 6666666555532210 100111 12222333344555778888888877552
Q ss_pred CCCcHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCC
Q 005632 310 GTDNGYLYLKLAE-CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSN 388 (687)
Q Consensus 310 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 388 (687)
-....++..-|. -+...|++..|-..|+-.+...|+++......-..+...|+-..|..+|+.++..-....
T Consensus 428 -~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q------ 500 (660)
T COG5107 428 -IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ------ 500 (660)
T ss_pred -CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh------
Confidence 123333333333 355678999999999999999999988777788888899999999999997765433221
Q ss_pred hhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632 389 PWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 389 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
--+++-.+...-..-|+...+...-+++...
T Consensus 501 ----~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 ----LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred ----hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 1135566666666777777766554544433
No 243
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.83 E-value=0.067 Score=57.07 Aligned_cols=304 Identities=16% Similarity=0.075 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP-----KDISLRIH 141 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~ 141 (687)
++.+..-+..+...|...+|++..-.+ -+|... ......+.-++..++.. .+...+..-| .+|.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 566777777777888888888765444 122211 12223333444444433 2333333333 34556677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---HHHH
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKLFPD--N-------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVI 209 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~ 209 (687)
.+.......++.+|..++.++...-+. . ....-..|.+....|++++|++..+.++..-|.+.. ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 788888899999999999888776443 1 234445678888999999999999999998776643 2356
Q ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHcCCHHH--HHHHHHHHhhh----CchhhHHH
Q 005632 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKE--LPLKLKVKAGICYLRLGNMEK--AEILFADLQWK----NAIDHADL 281 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~----~~~~~~~~ 281 (687)
..++.+..-.|++++|..+...+.+.....+. ....+....+.++..+|+... ....+...... .+. ..-.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~-~~f~ 579 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR-HEFL 579 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc-chhH
Confidence 67899999999999999999988876332222 334455556778888884333 33333332221 111 1111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-----cCCCcHHH-HHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---HH---
Q 005632 282 ITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYL-YLKLAECYLSLKERAHAIMFFYKALDRFEDN---ID--- 349 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~--- 349 (687)
....+.++...-+++.+..-....+.. ..|....+ ++.++.++...|++++|...+.......... +.
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 122222222222244444333332222 12222322 2489999999999999999999887763322 11
Q ss_pred -HHHHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632 350 -ARLTLASLLLEEAKEEEAITLLSPPKDLD 378 (687)
Q Consensus 350 -~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 378 (687)
+..........+|+..+|.....+....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~ 689 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLKSGDPD 689 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHhccCch
Confidence 11222334456799999988888755443
No 244
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.82 E-value=0.00094 Score=66.50 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=93.8
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI--SLRIHLASFYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
.....+++..|.+...+..-+..+...|+..+|..++..++-..|... .++..+|.++.+.|...+|--.+..++.-.
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 344556666666655555555556678999999999999999876543 468889999999999999999998888777
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
|.-..-++.++.++...|++......|..+.+..|....
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 766666889999999999999999999999988887543
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.78 E-value=0.011 Score=62.79 Aligned_cols=277 Identities=19% Similarity=0.128 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----GDTAQAMYYIRQAIRA-----EPKDISLRIHLASFYVEIG--- 150 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g--- 150 (687)
...|..+++.+... .+..+...+|.++..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887654 4677788888887654 5899999999998771 1125557888999998853
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc----ch
Q 005632 151 --DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN----NA 221 (687)
Q Consensus 151 --~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~----~~ 221 (687)
++..|+.+|.++... +++.+.+.+|.++.... ++..|..+|..+....-. .+.+.++.+|..- .+
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~----~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI----LAIYRLALCYELGLGVERN 379 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCCCcCCC
Confidence 678899999999877 56788889999988766 578999999998765422 2677888877653 57
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCch---hhHHHHHHHHHHHHh----cC
Q 005632 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWKNAI---DHADLITEVADTLMS----LG 293 (687)
Q Consensus 222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~----~g 293 (687)
...|..+++++... . .+.+...++.++... +.++.+...+......... .+...+......... ..
T Consensus 380 ~~~A~~~~k~aA~~----g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK----G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred HHHHHHHHHHHHHc----c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 89999999999987 3 334444444444333 7777776666654333211 111111111111111 12
Q ss_pred ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHH
Q 005632 294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL----KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE---AKEEE 366 (687)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~ 366 (687)
+...+...+.++. ...++.+...+|.+|..- .+++.|...|..+.... ....+++|.++..- .....
T Consensus 454 ~~~~~~~~~~~a~---~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 454 TLERAFSLYSRAA---AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred chhHHHHHHHHHH---hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHH
Confidence 4556666666555 456788888999988865 35999999999998776 88899999988652 12688
Q ss_pred HHHhcCCCCcCCcc
Q 005632 367 AITLLSPPKDLDSL 380 (687)
Q Consensus 367 A~~~~~~a~~~~~~ 380 (687)
|..++.++...+..
T Consensus 528 a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 528 AKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHhcCch
Confidence 88888887766553
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.78 E-value=2.6e-05 Score=46.65 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=20.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCChHHHH
Q 005632 57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAF 88 (687)
Q Consensus 57 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 88 (687)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.78 E-value=0.017 Score=58.19 Aligned_cols=292 Identities=17% Similarity=0.101 Sum_probs=151.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--------CCCHHHHHHHHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--------PKDSALWKQLLTF 111 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~ 111 (687)
+.+..+.|+++. +.+.+...+ +.++..+..+......|+++++..+.+++...- +......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 567788899988 333333333 234667777777778899999888888776542 1111111111111
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHLASFYVEIGDYE--KAAESYEQIQKL----FPDNVDATKTGAQLFL 181 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~----~p~~~~~~~~la~~~~ 181 (687)
+....+.+++..+....... +.. ...|...-.. ...+++ +-+-.++..+-. .......+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 11222333333333111100 000 0011111000 011111 111111222111 3345677888899999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHcchHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHcC
Q 005632 182 KCGQTARSIGILEEYLKVHPSDA--DLSVIDLLVAILMENNAYEKTLQHIEHAQI-VRFSGKELPLKLKVKAGICYLRLG 258 (687)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 258 (687)
+.|.++.|...+.++....+... ...+....+.+....|+..+|+..++..+. ................+..+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE---- 233 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence 99999999999998887653221 223566788889999999999998888887 21111000000000000000
Q ss_pred CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc------CChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhc---
Q 005632 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSL------GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE--- 329 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--- 329 (687)
..+.... .............++..+|...... +..++++..|..+... .|.....|+..|..+...-+
T Consensus 234 ~~~~~~~--~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 234 SLEVISS--TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred ccccccc--cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHhhh
Confidence 0000000 0000011122455666667766666 7788888888888876 67777777777776654322
Q ss_pred --------------HHHHHHHHHHHHHhcCC
Q 005632 330 --------------RAHAIMFFYKALDRFED 346 (687)
Q Consensus 330 --------------~~~A~~~~~~al~~~p~ 346 (687)
...|+..|-+++...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 311 REKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13366666677766665
No 248
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00077 Score=59.53 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 105 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 105 (687)
+..+-++|+.++..|+|.+|...|..++.. .|..++. ++++......+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW------------------------~eLdk~~tpLl 233 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW------------------------LELDKMITPLL 233 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH------------------------HHHHHhhhHHH
Confidence 445567788888888888888888877542 2322221 01111123345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
.++..|+...|+|-++++....++..+|.+..+++..|.+....=+.++|...|.++++++|.-.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 56666666666666666666666666666666666666666666666666666666666666543
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.76 E-value=0.0015 Score=63.50 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---chhhHHHHHHHHHHHHh---cCChHHHHHHHHHhhhccCCCcHHHH
Q 005632 244 LKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMS---LGHSNSALKYYHFLETNAGTDNGYLY 317 (687)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 317 (687)
..+...+-..|....+|+.-+.+.+.+.... ....+.+....|.++.+ .|+.++|+..+..++....+.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444444455555556665555555543320 11244455555666655 66666666666664444455566666
Q ss_pred HHHHHHHHHh---------hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC----cCCcccCCC
Q 005632 318 LKLAECYLSL---------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK----DLDSLDMNS 384 (687)
Q Consensus 318 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~~~~~~~~ 384 (687)
..+|.+|... ...++|+..|.++.+.+|+. -.-.+++.++...|...+...-+.+.. ..-......
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 6666665432 23788999999999988653 334556666666665332221111111 000011112
Q ss_pred CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632 385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (687)
Q Consensus 385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 425 (687)
+..+.+| ....++.+..-.|++++|+..++++++..+
T Consensus 300 ~~~~dYW----d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 300 EKMQDYW----DVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 3345677 677788888889999999999999987653
No 250
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0012 Score=58.48 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDI----------SLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
.++..-|+-++..|+|.+|...|+.++. ..|.++ ..+.+++.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4567778889999999999999998865 245544 3577889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
..|.+..+++..|......=+.++|..-|..+++++|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999987654
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.073 Score=52.13 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP-----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
-+..+|..+..++++++|.+.|.++.+...+.+ +++..+....+-+++.+.-...+...-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345679999999999999999999987655443 334444444455677777777777666777877777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
..++.+++.+|++.+..-...-... ...-...+.++...|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8899999999998887665431111 011223577788888888888888887754
No 252
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.64 E-value=0.14 Score=55.42 Aligned_cols=324 Identities=18% Similarity=0.134 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHhCCC----chHHHHHHHHHHH-HcCChHHHHHHHHHHhccCC--CCH----HHHHHHHHHHHHcCCH
Q 005632 50 FEQAISLLKEVVRLSPN----LPETYNTLGLAHS-ALGNHKSAFDFYVIAAHLSP--KDS----ALWKQLLTFAVQKGDT 118 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~ 118 (687)
...|+.+++-+++..+- .+.+++.+|.+++ ...+++.|..++.+++.+.. +.. ...+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34567777777742221 3557889999988 68899999999999987763 322 2345678888888877
Q ss_pred HHHHHHHHHHHHhCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCh
Q 005632 119 AQAMYYIRQAIRAEPK---D-ISLRIHL--ASFYVEIGDYEKAAESYEQIQKLF--PDNVDA----TKTGAQLFLKCGQT 186 (687)
Q Consensus 119 ~~A~~~~~~a~~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~----~~~la~~~~~~g~~ 186 (687)
. |...+++.++.... . ....+.+ ...+...+++..|++.++...... +.++.+ ....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999998886543 2 2222222 333333479999999999998875 345433 23345666777888
Q ss_pred HHHHHHHHHHHHhC------CCC--CcHHHHHHHHH--HHHHcchHHHHHHHHHHHHHHh---ccCC-------------
Q 005632 187 ARSIGILEEYLKVH------PSD--ADLSVIDLLVA--ILMENNAYEKTLQHIEHAQIVR---FSGK------------- 240 (687)
Q Consensus 187 ~~A~~~~~~~~~~~------p~~--~~~~~~~~la~--~~~~~~~~~~A~~~~~~~~~~~---~~~~------------- 240 (687)
+++++.++++.... |+. +...++..+.. ++...|+++.+...+++.-... ....
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 88888888874431 222 11223444333 4456677777766655543321 1100
Q ss_pred ------------Cc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh---------------------
Q 005632 241 ------------EL----------PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID--------------------- 277 (687)
Q Consensus 241 ------------~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------- 277 (687)
+. ..-+++.-|......+..++|.+++++++..-...
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 00 01233344556667777767777777754321100
Q ss_pred ----hHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc--CC------CcHHHHHHHHHHHHHhhcHHHHHHHHH-------
Q 005632 278 ----HADLITEVADTLMSLGHSNSALKYYHFLETNA--GT------DNGYLYLKLAECYLSLKERAHAIMFFY------- 338 (687)
Q Consensus 278 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~------~~~~~~~~la~~~~~~g~~~~A~~~~~------- 338 (687)
........+...+-.+++..|...++.+.... .| ..+.+++..|..+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 11234456677788999999999998776541 12 257788999999999999999999998
Q ss_pred -HHHHhcCCC---HHHHHHHHHHHHHcCCHHH----HHHhcCCC
Q 005632 339 -KALDRFEDN---IDARLTLASLLLEEAKEEE----AITLLSPP 374 (687)
Q Consensus 339 -~al~~~p~~---~~~~~~la~~~~~~g~~~~----A~~~~~~a 374 (687)
.+....+.+ .-+..++..++...+.... +.+.++..
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i 479 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQI 479 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc
Confidence 333333333 2234566777776665332 44454433
No 253
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.64 E-value=9.1e-05 Score=72.32 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+-..+...+.-++++.|+..|.++++++|+.+..+...+..+...+++..|+.-+.++++.+|....+++..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 33445666777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLF 180 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 180 (687)
.+.+|...|+....+.|+++.+...+..+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888888888888888888887776665553
No 254
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.59 E-value=0.17 Score=54.92 Aligned_cols=275 Identities=18% Similarity=0.056 Sum_probs=180.0
Q ss_pred CCCCh--hHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCC--Cch----HHHHHHHHHHHHcCChHHHHHHHHHHhccC
Q 005632 28 NKLSP--GVTKMLGEASLQY-AYGNFEQAISLLKEVVRLSP--NLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHLS 98 (687)
Q Consensus 28 ~~~~~--~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 98 (687)
.+++| ++...+..|.+++ ...+++.|..++++++.+.. +.. .+.+.++.++.+.+... |...+++.++..
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 34555 5666788899988 78999999999999987753 322 34567788888888777 999999988765
Q ss_pred CC---CHHH-HHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 99 PK---DSAL-WKQL--LTFAVQKGDTAQAMYYIRQAIRAE--PKDISL----RIHLASFYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 99 p~---~~~~-~~~l--a~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
.+ .... .+.+ .......+++..|++.++...... +.++.+ ....+.+....+..+++++.++++....
T Consensus 130 ~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 130 ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 43 2222 2222 333333489999999999988765 355443 3334666677888888998888885432
Q ss_pred C----------CCHHHHHHHHH--HHHHcCChHHHHHHHHHHH---Hh---CC---C---C-----------------Cc
Q 005632 167 P----------DNVDATKTGAQ--LFLKCGQTARSIGILEEYL---KV---HP---S---D-----------------AD 205 (687)
Q Consensus 167 p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~~~---~~---~p---~---~-----------------~~ 205 (687)
. ....++..+-. ++...|+++.+...++++- +. .+ . + +.
T Consensus 210 ~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~ 289 (608)
T PF10345_consen 210 RSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPL 289 (608)
T ss_pred hhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCcee
Confidence 1 12344444433 4466777777766655443 22 11 0 0 00
Q ss_pred ---H--------HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC-------Cc---------------hHHHHHHHHH
Q 005632 206 ---L--------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK-------EL---------------PLKLKVKAGI 252 (687)
Q Consensus 206 ---~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~---------------~~~~~~~l~~ 252 (687)
+ -++..-|......+..++|.++++++++...... +. ...+.+..+.
T Consensus 290 ~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~ 369 (608)
T PF10345_consen 290 VFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIW 369 (608)
T ss_pred EEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 0 1222334455666777788888888887632111 00 1123445677
Q ss_pred HHHHcCCHHHHHHHHHHHhhhC---c-----hhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632 253 CYLRLGNMEKAEILFADLQWKN---A-----IDHADLITEVADTLMSLGHSNSALKYYH 303 (687)
Q Consensus 253 ~~~~~~~~~~A~~~~~~~~~~~---~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (687)
+..-.+++..+...++.+.... | ...+..++..|..+...|+.+.|...|.
T Consensus 370 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 370 CNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 7788899999999988775432 1 1246778899999999999999999998
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.59 E-value=0.00015 Score=43.79 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (687)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999874
No 256
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.56 E-value=0.22 Score=55.44 Aligned_cols=370 Identities=11% Similarity=0.045 Sum_probs=215.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHc----C---ChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSAL----G---NHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
-.+++....|+.|+..|+++-...|+. .++.+..|.....+ | .+++|+..|++... .|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 456677889999999999999999875 45778888877653 3 47788888887643 4666777888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFPDNVDATK--------- 174 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------- 174 (687)
+|.+.|++++-+++|.-+++..|..|..-.. +-.+... +-..|....--++...|.......
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISSREEEKFLEILY 638 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 9999999999999999999999988754222 2222221 223444444445555554321100
Q ss_pred --------------------H-H-HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632 175 --------------------T-G-AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232 (687)
Q Consensus 175 --------------------~-l-a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 232 (687)
. + -.+-+..|..---...++++....|- .++...-.+....|.++-+.+.....
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (932)
T PRK13184 639 HKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY----RALADIFYVACDLGNWEFFSQFSDIL 714 (932)
T ss_pred hhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH----HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0 0 01112233333333445555444332 34555566667888887766655554
Q ss_pred HHHhcc-CCCch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632 233 QIVRFS-GKELP--------LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 303 (687)
Q Consensus 233 ~~~~~~-~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (687)
...... +.+.. ...+..-..+......++++...+... .+.....+....+.-....++.+.-....+
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (932)
T PRK13184 715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQALLDEEGESIIQLLQ 791 (932)
T ss_pred HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 432110 01111 111222233344455677776644443 221111222233333333344333333333
Q ss_pred HhhhccCC--CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC--
Q 005632 304 FLETNAGT--DNGYLYLKLAECYLSLKERAHAIMFFYKALD--RFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL-- 377 (687)
Q Consensus 304 ~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-- 377 (687)
.+.....+ ...........+|....++++|-+.+...-. ...+...+....|.-+...++-+-|...|....+.
T Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (932)
T PRK13184 792 LIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDAL 871 (932)
T ss_pred HHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcccccc
Confidence 33322112 2234445566788888999999888743211 12244667777888888888888888888866632
Q ss_pred CcccCC---------CCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005632 378 DSLDMN---------SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (687)
Q Consensus 378 ~~~~~~---------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 421 (687)
.|.... .....+||.....+..+...+.-.|+.++- ..|+.+.
T Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 923 (932)
T PRK13184 872 FPRSLDGDIFDYLGKISDNLSWWEKKQLLRQKFLYFHCLGDSEER-DKYRQAY 923 (932)
T ss_pred CcchhhccccchhccccccccHHHHHHHHHHHHHHHHHhCChhHh-HHHHHHH
Confidence 221111 134557898888999999999999998887 5555544
No 257
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.028 Score=50.70 Aligned_cols=185 Identities=13% Similarity=0.171 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYA-YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
.+....+...++.+. ...-+.|+.+...++..+|.+..+|...-.++..++ +..+-++++..++..+|.+..+|...-
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 344555544444433 455688999999999999999888887777776654 677888999999999999999999888
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC---
Q 005632 110 TFAVQKGDTA-QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CG--- 184 (687)
Q Consensus 110 ~~~~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g--- 184 (687)
.+....|++. .-++..+.++..+..+-.+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+... .|
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence 8888888887 778889999998888889999998899999999999999999999877776666544332222 12
Q ss_pred --ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632 185 --QTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (687)
Q Consensus 185 --~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~ 218 (687)
..+.-+.+....+...|.+.. +|..|..++..
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeS--aWnYL~G~l~~ 233 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNES--AWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHh
Confidence 123445667777888899886 68888777775
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00024 Score=42.84 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (687)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999875
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.54 E-value=0.09 Score=50.52 Aligned_cols=124 Identities=10% Similarity=0.088 Sum_probs=82.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhC----CCc----hHHHHHHHHHHHHcC-ChHHHHHHHHHHhccC----C---CC------
Q 005632 44 QYAYGNFEQAISLLKEVVRLS----PNL----PETYNTLGLAHSALG-NHKSAFDFYVIAAHLS----P---KD------ 101 (687)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~----p---~~------ 101 (687)
...+|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.+.- + ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457889999999998885543 332 346777788888888 8888888888887661 1 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 102 -SALWKQLLTFAVQKGDTA---QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (687)
Q Consensus 102 -~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 167 (687)
...+..++.++...+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 134556677777666543 444455555556676666665555555557777777777777776543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.005 Score=63.70 Aligned_cols=181 Identities=18% Similarity=0.095 Sum_probs=114.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHH-----HHHHHHHHH----HcchHHHHHH
Q 005632 157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV-----IDLLVAILM----ENNAYEKTLQ 227 (687)
Q Consensus 157 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----~~~la~~~~----~~~~~~~A~~ 227 (687)
-.|.-++.+-|.. ...+..+.--.|+-+.++..+.++.+...-...... |+.....+. .....+.|.+
T Consensus 178 G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 3555566665532 334444444567777777777777652211111101 111111111 2456677777
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---chhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHF 304 (687)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (687)
.+...... .|......+..|.++...|+.++|+..|++++... +.-..-.++.++.++.-.++|++|...+..
T Consensus 255 lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 255 LLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 77777777 66777777778888888888888888888765421 122344567788888888888888888888
Q ss_pred hhhccCCCcHHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHhc
Q 005632 305 LETNAGTDNGYLYLKLAECYLSLKER-------AHAIMFFYKALDRF 344 (687)
Q Consensus 305 ~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 344 (687)
+.+...-......+..|.|+...|+. ++|.+++.++-...
T Consensus 331 L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 331 LLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 87764444566667777888888877 88888888776543
No 261
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00057 Score=63.31 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
-+-.-|.-|+...+|..|+..|.+.+.....+ ...|.+.|-+....|+|..|+.-..+++..+|.+..+++.-|.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33444666666666666666666666553222 23455666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 005632 146 YVEIGDYEKAAESYEQIQKLFP 167 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p 167 (687)
++.+.++.+|...++..+.++.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhH
Confidence 6666666666666666655543
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.51 E-value=0.00016 Score=43.65 Aligned_cols=30 Identities=37% Similarity=0.602 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSP 99 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 99 (687)
+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 263
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.51 E-value=0.2 Score=53.65 Aligned_cols=302 Identities=13% Similarity=0.036 Sum_probs=181.8
Q ss_pred CChhHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-----CCH
Q 005632 30 LSPGVTKM-LGEASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-----KDS 102 (687)
Q Consensus 30 ~~~~~~~~-~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~ 102 (687)
.+++...+ ..-+..+...|...+|+...-.+ .+|.. .+..-..+.-.+..++..--. ..++.-| .++
T Consensus 342 ~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P 415 (894)
T COG2909 342 LAARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTP 415 (894)
T ss_pred cCCchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCc
Confidence 34444443 44456667788899998875443 23332 223334455555555543332 2222223 345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--D-------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---- 169 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---- 169 (687)
......+.......++.+|..++.++...-|. . ....-..|.+....|++++|+...+.++..-|.+
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 56667788888899999999999888775433 1 2344556788889999999999999999987765
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcch--HHHHHHHHHHHHHHhccCCCc
Q 005632 170 -VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA--YEKTLQHIEHAQIVRFSGKEL 242 (687)
Q Consensus 170 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~ 242 (687)
..+...+|.+..-.|++++|..+...+.+....... ..+....+.++..+|+ +.+....+.......-...+.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 356778899999999999999999988876332221 1234455778888883 333333443333321111222
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hCch--hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC-
Q 005632 243 ---PLKLKVKAGICYLRLGNMEKAEILFADLQW----KNAI--DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD- 312 (687)
Q Consensus 243 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 312 (687)
...++..+..++.+ ++.+.......+. ..+. ...-..+.++.+.+..|++++|...+..+.......
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 22333333333433 4444444443322 2221 122233589999999999999999998876552211
Q ss_pred ---cHHH--HHHHHHHHHHhhcHHHHHHHHHHH
Q 005632 313 ---NGYL--YLKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 313 ---~~~~--~~~la~~~~~~g~~~~A~~~~~~a 340 (687)
+..+ ..........+|+.+.|.....+.
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1111 122223345678888888887773
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.0036 Score=53.63 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
.+...++..+...|++++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455566666667777777777777777776666666677777777777777666666543
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.49 E-value=0.00021 Score=43.09 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSP 99 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p 99 (687)
++.+|.+++..|++++|+.+|++++.++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444433
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.49 E-value=0.11 Score=50.00 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=90.1
Q ss_pred HHHcCChHHHHHHHHHHhccC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC------
Q 005632 78 HSALGNHKSAFDFYVIAAHLS----PKD----SALWKQLLTFAVQKG-DTAQAMYYIRQAIRA----EP---KD------ 135 (687)
Q Consensus 78 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~----~p---~~------ 135 (687)
....|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.+. .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999998886544 332 244667777888888 999999999998876 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005632 136 -ISLRIHLASFYVEIGDYE---KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201 (687)
Q Consensus 136 -~~~~~~la~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 201 (687)
..++..++.+|...+.++ +|...++.+....|+.+..+...-.++...++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 235677888888877654 455566666667788787776666666668888888888888887654
No 267
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.001 Score=61.69 Aligned_cols=108 Identities=20% Similarity=0.142 Sum_probs=94.3
Q ss_pred hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc--CCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA--GTD-NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (687)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (687)
..|.....-+..-|.-|++.++|..|...|.+.+... +|+ ++.+|.+.|.+....|+|..|+....+++..+|.+..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 3444566667788999999999999999999988763 233 6778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHhcCCCCcCCcc
Q 005632 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (687)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (687)
+++.-+.++..+.++.+|...++..+..+..
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999988776553
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.44 E-value=0.032 Score=56.26 Aligned_cols=278 Identities=11% Similarity=0.027 Sum_probs=143.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Q 005632 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASF 145 (687)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~ 145 (687)
.+.+..+.|+++.-.++....- .+.+...+..+......|+++++..+.+++...- +......+..-..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3567788999998444333322 2233555666666668999999999888876632 1111111111112
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHH--HHHHHHHh--CCCCCcHHHHHHHHHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPDNV----DATKTGAQLFLKCGQTARSIG--ILEEYLKV--HPSDADLSVIDLLVAILM 217 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~--~~~~~~~~--~p~~~~~~~~~~la~~~~ 217 (687)
+....+.+++..+....... +... ..|...-. ....+++-=.. .++..+-. .........+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22223333333333211100 0000 00110000 00111111111 11111110 111122236778888888
Q ss_pred HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh--HHHHHHHHHHHHhcCCh
Q 005632 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH--ADLITEVADTLMSLGHS 295 (687)
Q Consensus 218 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~ 295 (687)
..|.++.|...+.++...........+.+.+..+.++...|+..+|+..++..+....... ......+...... ..
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 235 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE--SL 235 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--cc
Confidence 8888888888888877653222333566777778888888888888888887765221111 0000000000000 00
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 005632 296 NSALKYYHFLETNAGTDNGYLYLKLAECYLSL------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 361 (687)
Q Consensus 296 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 361 (687)
+.....- .........+.++..+|...... +..+++...|.++++.+|....++..+|..+...
T Consensus 236 ~~~~~~~--~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTN--LDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccc--hhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0000000 00000122345677777777777 8899999999999999999999999998877654
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.056 Score=55.61 Aligned_cols=192 Identities=13% Similarity=0.022 Sum_probs=110.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---------HHHHHHHHHHHHcC
Q 005632 46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---------ALWKQLLTFAVQKG 116 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g 116 (687)
..=..++|+++. +.+| +|..|..++......-.++-|...|-+.-... .-. .--...+.+-.--|
T Consensus 675 e~vgledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 675 EAVGLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred HHhchHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 333456666554 4466 78999999999888888888888776653221 110 00123344445568
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
++++|...|-.+-.. + .-..++...|++-...+.++..-.-+.+ -..++..+|..+..+..+++|.++|.
T Consensus 749 ~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred chhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887654322 1 1223455667776666665543221111 13677788888888888888888877
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 195 ~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 269 (687)
..-. ....+.+++....|++-..+. .. -|.+...+-.+|..+...|.-++|.+.+-+
T Consensus 821 ~~~~----------~e~~~ecly~le~f~~LE~la----~~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 821 YCGD----------TENQIECLYRLELFGELEVLA----RT----LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hccc----------hHhHHHHHHHHHhhhhHHHHH----Hh----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6421 114555666666555433222 22 233334444566666666666666665544
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.0048 Score=52.83 Aligned_cols=97 Identities=24% Similarity=0.289 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------------------chHHHHHHHHHHHHcCChHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN----------------------LPETYNTLGLAHSALGNHKSAFDFY 91 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----------------------~~~~~~~l~~~~~~~g~~~~A~~~~ 91 (687)
+..+...|......|+.+.++..+++++..... ...+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 345556677788899999999999999986422 1224566777888999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 92 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 130 (687)
++++..+|.+..++..+..++...|+..+|+..|++...
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 271
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.094 Score=47.47 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 005632 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE-KAAESYE 160 (687)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~ 160 (687)
.-+.|+..-..++.++|.+..+|...-.++..++ +..+-++++..+++.+|.+-.+|...-.+....|++. .-++..+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 3445566666777788887777776666665544 5667778888888888888888887777777777777 7777888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
.++..+..+..+|...--+....+.++.-+.+..++++.+-.+.
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 88888777888887777777777778888888888877664443
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.037 Score=46.54 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=22.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632 286 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (687)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (687)
+.++...|.|++-....+.+....+|-...+.-.||..-++.|++..|...|.++.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 33334444444444333333322223333333344444444444444444444433
No 273
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.34 E-value=0.00024 Score=66.08 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156 (687)
Q Consensus 77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 156 (687)
-.+..|.+++|++.|..++.++|.....+...+.+++.++....|+.-+..++.++|+...-+-..+.....+|++.+|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 33445566666666666666666666666666666666666666666666666666666655666666666666666666
Q ss_pred HHHHHHHHhC
Q 005632 157 ESYEQIQKLF 166 (687)
Q Consensus 157 ~~~~~~~~~~ 166 (687)
..+..+.+++
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 6666666554
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.41 Score=57.01 Aligned_cols=331 Identities=12% Similarity=0.066 Sum_probs=190.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
..|..-++.|.|.+|+-++++- ...+. ....++.+-.+|...++++.-....... ..+|+ ....-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHHh
Confidence 5688889999999999999985 22221 1234455555888888888766665531 11222 3344445667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCChHHHHHHH
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA-QLFLKCGQTARSIGIL 193 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 193 (687)
.|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++..+-+..++ .+..+.++++.-..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999999999999987777777777777788888888777666655555444444433 2234555555544442
Q ss_pred H--------------HHHHhCCCCCcHHHHHHHHHHH----------HHcchHHHHHHHHHHHHHH------------hc
Q 005632 194 E--------------EYLKVHPSDADLSVIDLLVAIL----------MENNAYEKTLQHIEHAQIV------------RF 237 (687)
Q Consensus 194 ~--------------~~~~~~p~~~~~~~~~~la~~~----------~~~~~~~~A~~~~~~~~~~------------~~ 237 (687)
. ..+.....+.-. .+..+...- ...|.|..+.++.-+.... ..
T Consensus 1542 ~~~n~e~w~~~~~g~~ll~~~~kD~~~-~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s 1620 (2382)
T KOG0890|consen 1542 SDRNIEYWSVESIGKLLLRNKKKDEIA-TLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVS 1620 (2382)
T ss_pred hcccccchhHHHHHHHHHhhcccchhh-HHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2 001111111100 000110000 1111222333322222111 00
Q ss_pred c-----CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hC---chhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 238 S-----GKELPLKLKVKAGICYLRLGNMEKAEILFADLQW---KN---AIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 238 ~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
. ....++........-+.+ ..+-+-.+++..- .. .....+.|...|++....|+++.|...+-.+.
T Consensus 1621 ~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1621 YDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 0 011112222222222222 3333333333221 12 23467889999999999999999999987777
Q ss_pred hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-CCC----------------HHHHHHHHHHHHHcCCH--HHH
Q 005632 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDN----------------IDARLTLASLLLEEAKE--EEA 367 (687)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----------------~~~~~~la~~~~~~g~~--~~A 367 (687)
+. .-+.++...|..+...|+-..|+..+++.++.+ |+. ..+.+.++......|++ ..-
T Consensus 1698 e~---r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~i 1774 (2382)
T KOG0890|consen 1698 ES---RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDI 1774 (2382)
T ss_pred hc---ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 54 267789999999999999999999999999653 331 12334444555555653 345
Q ss_pred HHhcCCCCcCCcccC
Q 005632 368 ITLLSPPKDLDSLDM 382 (687)
Q Consensus 368 ~~~~~~a~~~~~~~~ 382 (687)
+++|..+....|...
T Consensus 1775 lk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1775 LKYYHDAKAILPEWE 1789 (2382)
T ss_pred HHHHHHHHHHccccc
Confidence 667777777777543
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.024 Score=48.90 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=76.8
Q ss_pred HHHHHHHhccCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 88 FDFYVIAAHLSPKDSA---LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQ 161 (687)
Q Consensus 88 ~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 161 (687)
.....+....+|.+.. +...++..+...|++++|+..++.++....+. .-+-..++.+...+|.+++|+..+..
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3334444444444332 34566778888888888888888887643222 23466788888888888888887766
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 162 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
.-... -.+......|.++...|+-++|+..|++++...++..
T Consensus 152 ~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 152 IKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 43210 1123345678888888888888888888888875544
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.027 Score=48.63 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCchh--hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 005632 247 KVKAGICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECY 324 (687)
Q Consensus 247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 324 (687)
...++..+...+++++|...++.++...... ..-+-..++.+....|.+++|+..+..... +.-.+......|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 3344555555555566655555554322211 223345566666666666666666644331 122333445566677
Q ss_pred HHhhcHHHHHHHHHHHHHhcCC
Q 005632 325 LSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 325 ~~~g~~~~A~~~~~~al~~~p~ 346 (687)
...|+.++|+..|+++++.+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 7777777777777777666543
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.049 Score=45.83 Aligned_cols=151 Identities=7% Similarity=-0.020 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (687)
+.-+.-+...+..++|+..|..+-+..-.....-+....+.+....|+...|+..|..+-...+........+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 34455566778899999999888777655555446777888999999999999999998766332233345667778888
Q ss_pred HHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Q 005632 254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326 (687)
Q Consensus 254 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 326 (687)
+...|.|++.....+.+-....+-...+...||..-++.|++..|..+|..+.. +...|......+.+...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~mld 212 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHHH
Confidence 899999999888888765443334667788899999999999999999988774 34555555555555443
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.16 E-value=0.05 Score=53.40 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCC------------hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 55 SLLKEVVRLSPNLPETYNTLGLAHSALGN------------HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 55 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
..|++.+..+|.+.++|..+...--..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45667777788888888777655433221 234445555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 005632 123 YYIRQAIRAEPKDISLRIHLASFYVE---IGDYEKAAESYEQIQK 164 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~ 164 (687)
..+++++..+|+++..|...-..... .-.+......|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 55555555555555554443333222 1234444444444443
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.15 E-value=0.3 Score=48.06 Aligned_cols=130 Identities=10% Similarity=0.041 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-----LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
.+...|.++..++++.+|...|.++.+...+.+. .+..+....+-+++.+.-...+-..-+..|..+......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3445677777788888888888777765444432 22222222334455555555555555566777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-------------H--HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 145 FYVEIGDYEKAAESYEQIQKLFPDNV-------------D--ATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~--~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
...+.+++.+|++.+....+.-.... + .-...+.++...|++.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 77777777777777766655422211 0 1113355566666666666666665543
No 280
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.13 E-value=0.55 Score=50.73 Aligned_cols=128 Identities=10% Similarity=0.025 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
....|..|...+..|++..+.....++ ..+|- ..|...-.+....+ .++ -+...+...|+.+..-......
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHH
Confidence 467889999999999999987766653 33443 22222222222222 233 3333444566655443333322
Q ss_pred ---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 112 ---AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 112 ---~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
+...+++..-+.++ ...|.+.......+......|+.++|.....++.......+..
T Consensus 106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~ 165 (644)
T PRK11619 106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNA 165 (644)
T ss_pred HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChH
Confidence 33455666555432 2347788888888888999999888887777776554443333
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.62 Score=55.60 Aligned_cols=134 Identities=11% Similarity=0.067 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHh---ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHH
Q 005632 222 YEKTLQHIEHAQIVR---FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA 298 (687)
Q Consensus 222 ~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 298 (687)
..+-+-.++++.-.. +.-.......|...|.+....|.++.|...+-.+.+.. -+.+....|..+...|+...|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHH
Confidence 444455555554332 12244567889999999999999999999888876553 678889999999999999999
Q ss_pred HHHHHHhhhccCCC----------c------HHHHHHHHHHHHHhhcH--HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005632 299 LKYYHFLETNAGTD----------N------GYLYLKLAECYLSLKER--AHAIMFFYKALDRFEDNIDARLTLASLL 358 (687)
Q Consensus 299 ~~~~~~~~~~~~~~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~ 358 (687)
+..+++.++...|+ . ..+.+.++......|++ .+-+++|..+.+..|...+.++.+|..|
T Consensus 1722 l~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 99999988653333 1 12334444444555553 3467889999999997766677676443
No 282
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.05 E-value=0.074 Score=52.23 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=97.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 125 IRQAIRAEPKDISLRIHLASFYVEIG------------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 125 ~~~a~~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
+++.+..+|.+.++|..+....-..- -.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44455555555555555554433221 135567788888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHH---cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 193 LEEYLKVHPSDADLSVIDLLVAILME---NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 269 (687)
+++++..+|++.. +|......... .-.++.....|.+++.......... .........+
T Consensus 88 we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--------------~~~~~~~~~~-- 149 (321)
T PF08424_consen 88 WEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--------------MTSHPDLPEL-- 149 (321)
T ss_pred HHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--------------cccccchhhH--
Confidence 8888888888764 44443333222 2356777777777776522100000 0000000000
Q ss_pred HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
......++..+...+...|..+.|+..++.+++.
T Consensus 150 -----e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 150 -----EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred -----HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 0124455667777788888888888888887776
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.02 E-value=0.0016 Score=39.12 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (687)
.+++.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578889999999999999999999999998853
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.99 E-value=0.4 Score=46.69 Aligned_cols=169 Identities=17% Similarity=0.094 Sum_probs=106.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL----GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-- 114 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 114 (687)
+......+++..|...+..+-.. .++.....++.+|... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR 123 (292)
T ss_pred cccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence 34444567778888888777652 2336777777777653 35677888887543 34566777778877776
Q ss_pred --cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 005632 115 --KGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIG-------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-- 182 (687)
Q Consensus 115 --~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-- 182 (687)
..+..+|..+|+++....-.. ..+.+.++.+|..-. +...|...|.++.... ++.+.+.+|.+|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL 201 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence 347788888888887764322 233666777666542 2235777777766654 66677777766644
Q ss_pred --cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632 183 --CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (687)
Q Consensus 183 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~ 220 (687)
..++.+|..+|.++.+... . ...+.++ ++...|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~--~--~a~~~~~-~~~~~g 236 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD--G--AACYNLG-LMYLNG 236 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC--H--HHHHHHH-HHHhcC
Confidence 2366777777777776654 2 2455666 555444
No 285
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.91 E-value=0.013 Score=45.48 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=66.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
+|..++.+||+-+|+++.+..+..++++. ..+...|.++..+ +......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence 57788999999999999999999888766 4455566665433 222221122222222
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
.++++|.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 2566666777777766666777766666666667776666666654
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.88 E-value=0.2 Score=45.51 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 46 AYGNFEQAISLLKEVVRLSPNLPE----TYNTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
...+.++|+.-|+++++..|...+ ++-.+..+++.+|++++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345889999999999998877543 677778888899999988888887764
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.85 E-value=0.027 Score=47.37 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..++.........++.+++..++.-+--..|+.++.-..-|.+++..|++.+|+..|+.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45566777777778888888888888777888888888888888888888888888888877777777777777788877
Q ss_pred HcCCHH
Q 005632 114 QKGDTA 119 (687)
Q Consensus 114 ~~g~~~ 119 (687)
..|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 777643
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.72 E-value=0.007 Score=55.55 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
+...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3334445555566666666666666666666666666666666666666666666666666666666666555443
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.70 E-value=0.002 Score=60.21 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 191 (687)
.+..|.+++|++.|..++.++|.....+...+.+++.+++...|+.-+..+++++|+...-+-..+.....+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhC
Q 005632 192 ILEEYLKVH 200 (687)
Q Consensus 192 ~~~~~~~~~ 200 (687)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 666666654
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.67 E-value=0.0039 Score=37.40 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=8.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~ 130 (687)
+|.++...|++++|+.+|+++++
T Consensus 7 lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333333333333333333333
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.66 E-value=0.0046 Score=36.73 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (687)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367788899999999999999999999888864
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.64 E-value=0.12 Score=51.45 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC-CCchHHHHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-KELPLKLKV 248 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~ 248 (687)
.+.+.....+.+.|-+..|.++.+-++.++|. |+- .+...+-....+.++++--+..++......... ...-+...+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 34556677788899999999999999999998 554 356666666677888887777777655420000 011224556
Q ss_pred HHHHHHHHcCCH---------------HHHHHHHHHHhhhCch
Q 005632 249 KAGICYLRLGNM---------------EKAEILFADLQWKNAI 276 (687)
Q Consensus 249 ~l~~~~~~~~~~---------------~~A~~~~~~~~~~~~~ 276 (687)
..+.++...++. +.|...+.+++...|.
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 667777777776 7777777777766553
No 293
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.58 E-value=0.82 Score=44.52 Aligned_cols=167 Identities=17% Similarity=0.080 Sum_probs=114.9
Q ss_pred HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 005632 77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK----GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE---- 148 (687)
Q Consensus 77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 148 (687)
.....+++..|...+..+... .+......++.+|... .+..+|..+|+.+.. ..++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCc
Confidence 334567888888888887662 3346777777777654 467889999985544 4677888889998887
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--
Q 005632 149 IGDYEKAAESYEQIQKLFPDN-VDATKTGAQLFLKCG-------QTARSIGILEEYLKVHPSDADLSVIDLLVAILME-- 218 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-- 218 (687)
..+..+|..+|.++.+..-.. ..+...++.+|..-. +...|...|.++.... +. .+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~--~a~~~lg~~y~~G~ 201 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP--DAQLLLGRMYEKGL 201 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH--HHHHHHHHHHHcCC
Confidence 458899999999998874333 234777777776642 2236777777776655 22 256677777654
Q ss_pred --cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632 219 --NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (687)
Q Consensus 219 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (687)
..++.+|..+|.++... .. ....+.++ ++...|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~----g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQ----GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCcCHHHHHHHHHHHHHC----CC--HHHHHHHH-HHHhcC
Confidence 34788888888888876 33 56666666 555555
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.51 E-value=0.16 Score=50.49 Aligned_cols=176 Identities=11% Similarity=-0.019 Sum_probs=108.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC
Q 005632 162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE 241 (687)
Q Consensus 162 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 241 (687)
.+..+|-+.+++..++.++..+|+...|.+.+++++=....... ..+.....-...|.. .--|. ...+.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~--~~F~~~~~~~~~g~~---rL~~~------~~eNR 100 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH--PSFSPFRSNLTSGNC---RLDYR------RPENR 100 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH--HHhhhhhcccccCcc---ccCCc------cccch
Confidence 34567778888888888888888888888888877543211000 000000000000000 00000 00122
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH-HHHHHHHHHHHhcCChHHHHHHHHHhhhccCC----CcHHH
Q 005632 242 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-DLITEVADTLMSLGHSNSALKYYHFLETNAGT----DNGYL 316 (687)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 316 (687)
....+.+.....+.+.|-+..|.++.+-++..+|..++ .+...+-....+.++++--+++++........ .-|..
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 23345566677788889999999999998888887444 44455555556778888777777765542111 24457
Q ss_pred HHHHHHHHHHhhcH---------------HHHHHHHHHHHHhcCCCH
Q 005632 317 YLKLAECYLSLKER---------------AHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 317 ~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 348 (687)
.+..+.++...++. +.|...+.+|+...|.-.
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 77888888888888 899999999999888643
No 295
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.49 E-value=1.7 Score=47.11 Aligned_cols=331 Identities=11% Similarity=0.047 Sum_probs=174.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH---HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 56 LLKEVVRLSPNLPETYNTLGLAHS---ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 132 (687)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 132 (687)
.+...+..+|+.|..-........ ..+++..-+.++ ...|.+....+.++......|+.++|.....++....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 455556778887765544444433 345555555422 2347888888889999999999988888887776655
Q ss_pred CCCHHHHHHHHHHHH------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Q 005632 133 PKDISLRIHLASFYV------------------EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARSIGIL 193 (687)
Q Consensus 133 p~~~~~~~~la~~~~------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 193 (687)
...+.....+-..+. ..|+...|......+ +.+... ++..... ..+...+...+
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETFA 232 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHHh
Confidence 444444333333333 334443333222221 111111 1111111 11122221111
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (687)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 273 (687)
.. ..|+... .-...++..-....+.+.|...+.+......-+.+....+...++.-....+..++|...+..+...
T Consensus 233 ~~---~~~~~~~-~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~ 308 (644)
T PRK11619 233 RT---TGPTDFT-RQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR 308 (644)
T ss_pred hc---cCCChhh-HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 11 1122111 1122333334456677888888887655422112223334444554444443366777777765433
Q ss_pred CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
.. +.........+....++++.+..++..+... ........+-+|+.+...|+.++|...|+++.. +.+ .+-.
T Consensus 309 ~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~ 381 (644)
T PRK11619 309 SQ--STSLLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPM 381 (644)
T ss_pred cC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHH
Confidence 22 3333444444556888999888888776543 345777888999998889999999999999744 222 2223
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
|+.- ++|..-. +.. ...|.. ... . ...-....+..+...|+...|......++..
T Consensus 382 LAa~--~Lg~~~~----~~~--~~~~~~-----~~~-~-~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 382 VAAQ--RLGEEYP----LKI--DKAPKP-----DSA-L-TQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred HHHH--HcCCCCC----CCC--CCCCch-----hhh-h-ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3322 2232100 000 000000 000 0 0013456777788889999988888777764
No 296
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.49 E-value=0.0063 Score=55.96 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=75.8
Q ss_pred chhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccce-eccccccccchHHHHHHHH
Q 005632 591 HGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIII-SGHQFTMASHHQDAARCYL 669 (687)
Q Consensus 591 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-~g~~~~~~~~~~~A~~~~~ 669 (687)
....++|.. -+.|+++..|..+++.....+- +.+-...+.+++.+||.++..|+. .+.-+...++++.+...|.
T Consensus 92 ~~f~~~R~t-nkff~D~k~w~~y~~Y~~k~k~----y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~ 166 (435)
T COG5191 92 KIFELYRST-NKFFNDPKIWSQYAAYVIKKKM----YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL 166 (435)
T ss_pred eeEeeehhh-hcCCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH
Confidence 334444443 3679999999999999998887 788899999999999999999986 8888899999999999999
Q ss_pred HHHhhCCCChhhh
Q 005632 670 EAYKLLPENPLIN 682 (687)
Q Consensus 670 ~a~~~~P~~p~~~ 682 (687)
+++..+|++|.++
T Consensus 167 ~glR~N~~~p~iw 179 (435)
T COG5191 167 KGLRMNSRSPRIW 179 (435)
T ss_pred hhhccCCCCchHH
Confidence 9999999999876
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.39 E-value=0.0075 Score=35.79 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
+|.++...|++++|+..|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 298
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.36 E-value=0.056 Score=41.11 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 156 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555566666666666666666666666666666655555544
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.35 E-value=0.8 Score=41.80 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-----------hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCC
Q 005632 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----------DHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTD 312 (687)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 312 (687)
.....+|.+|+..++|.+-..+++++...... .-.+++..-..+|..+++-..-..+|++++... .-.
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 34456777777777777766666665332111 123455556677778888777778888776541 122
Q ss_pred cHHHHHH----HHHHHHHhhcHHHHHHHHHHHHHhcCC-----CHHH--HHHHHHHHHHcC
Q 005632 313 NGYLYLK----LAECYLSLKERAHAIMFFYKALDRFED-----NIDA--RLTLASLLLEEA 362 (687)
Q Consensus 313 ~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~--~~~la~~~~~~g 362 (687)
.|.+.-. =|..+.+.|++++|-..|-++++.... ...+ ++.|+.++.+.|
T Consensus 226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3333322 245678889999999888888876432 2222 345666666654
No 300
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=1.2 Score=43.91 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHH
Q 005632 336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVD 415 (687)
Q Consensus 336 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 415 (687)
.+++++...|-.+++|+.....+...++-+.|+....+.....|. ..+.++..|...++-+.-..
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---------------L~~~lse~yel~nd~e~v~~ 354 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---------------LTMFLSEYYELVNDEEAVYG 354 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---------------hheeHHHHHhhcccHHHHhh
Confidence 567888888889999999999999999999999999999887774 56778888877777766666
Q ss_pred HHHHHHHHh
Q 005632 416 AIFPLVCES 424 (687)
Q Consensus 416 ~~~~~~~~~ 424 (687)
+|..++...
T Consensus 355 ~fdk~~q~L 363 (660)
T COG5107 355 CFDKCTQDL 363 (660)
T ss_pred hHHHHHHHH
Confidence 777766543
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.34 E-value=0.056 Score=41.14 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCC
Q 005632 53 AISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGD 117 (687)
Q Consensus 53 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 117 (687)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3456677777788888888888888888888888888888877776654 3344444444444443
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.26 E-value=0.086 Score=44.41 Aligned_cols=81 Identities=19% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+..+..+-...++.+++...+..+--+.|..++.-..-|.+++..|++.+|+..++.+....|..+.+.-.++.|+...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34444444455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred C
Q 005632 151 D 151 (687)
Q Consensus 151 ~ 151 (687)
+
T Consensus 93 D 93 (160)
T PF09613_consen 93 D 93 (160)
T ss_pred C
Confidence 4
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.20 E-value=0.011 Score=35.95 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 316 LYLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 316 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
++..+|.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888888888888885544
No 304
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=1.1 Score=41.42 Aligned_cols=53 Identities=21% Similarity=0.029 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHcCChHHHHHH
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPN--------LPETYNTLGLAHSALGNHKSAFDF 90 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~ 90 (687)
+..|+.....+++++|+..|.+++..... .......++.+|...|++..--+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 67788899999999999999999876321 234677888999998887654443
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.16 E-value=0.1 Score=43.00 Aligned_cols=84 Identities=19% Similarity=0.039 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
..++.........++.+++..++..+--..|+.++.-..-|.++...|+|.+|+..|+...+..+..+...-.++.|+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 44555566666788888888888888888888888888888888888888888888888887777777777777777777
Q ss_pred cCCH
Q 005632 115 KGDT 118 (687)
Q Consensus 115 ~g~~ 118 (687)
+|+.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 7763
No 306
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=1.1 Score=45.44 Aligned_cols=75 Identities=13% Similarity=-0.044 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----VDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
+.+.......|+++......+..+...|+.+.|+..+...++ +.- .-.++.+|.++.-+.+|..|...+..+.+
T Consensus 254 ~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d 331 (546)
T KOG3783|consen 254 KALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD 331 (546)
T ss_pred HHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 333333444454544444445555555554444444444443 111 11233444444444555555555544444
Q ss_pred h
Q 005632 199 V 199 (687)
Q Consensus 199 ~ 199 (687)
.
T Consensus 332 e 332 (546)
T KOG3783|consen 332 E 332 (546)
T ss_pred h
Confidence 3
No 307
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.11 E-value=0.079 Score=41.27 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
.++++|.++..+.|.....++.+|.-+-....|+++....++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566667777777766666666666655555666666666666544
No 308
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.03 Score=55.58 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=90.6
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc---CChHHHHHHHHHHhccCCCCHHH
Q 005632 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---GNHKSAFDFYVIAAHLSPKDSAL 104 (687)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~ 104 (687)
..+++.+...+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....++.++|....+
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 456778888888888888888999999999999999999888888888888764 56667777788888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 136 (687)
++.|+.++...+++.+|+.+...+....|.+.
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 88888888888888888888887777777443
No 309
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.03 E-value=0.43 Score=37.46 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHcCChHHHHHHHHHHhc-------c
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPN------------LPETYNTLGLAHSALGNHKSAFDFYVIAAH-------L 97 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~ 97 (687)
.+..|...+..|-|++|...++++++.... ++-++..|+..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 456677778888899999888888875321 344667777777788888777666555542 2
Q ss_pred CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 98 SPKDSALW----KQLLTFAVQKGDTAQAMYYIRQAI 129 (687)
Q Consensus 98 ~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~ 129 (687)
+.+....| +..+..+...|+.++|+..|+.+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 22222222 234444555555555555555443
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.98 E-value=0.044 Score=36.52 Aligned_cols=42 Identities=21% Similarity=0.002 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 356 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 356 (687)
+.++.+|..+.++|+|++|..+.+.+++..|+|..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356788889999999999999999999999999877655443
No 311
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.95 E-value=0.015 Score=35.29 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 005632 107 QLLTFAVQKGDTAQAMYYIRQ 127 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~ 127 (687)
.||.+|...|++++|+.+|++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333444444444444444443
No 312
>PRK10941 hypothetical protein; Provisional
Probab=95.90 E-value=0.1 Score=49.06 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS 207 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 207 (687)
...++-.+|...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556777888899999999999999999999998888899999999999999999999999988888643
No 313
>PRK10941 hypothetical protein; Provisional
Probab=95.81 E-value=0.14 Score=48.20 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
..++-.+|...++++.|+.+.+.++...|+++. -+...|.+|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445666677777777777777777777777764 4666777777777777777777777776
No 314
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.76 E-value=2.5 Score=42.51 Aligned_cols=332 Identities=12% Similarity=0.119 Sum_probs=177.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
.++.-++.-....-+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..+|+++..|...-+
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 3444444444445556669999999999999999999999999998888776 999999999999999999977653322
Q ss_pred HHHH---------------cCCHH-------HH-------------------HHHHHH---------H-----HHhCCCC
Q 005632 111 FAVQ---------------KGDTA-------QA-------------------MYYIRQ---------A-----IRAEPKD 135 (687)
Q Consensus 111 ~~~~---------------~g~~~-------~A-------------------~~~~~~---------a-----~~~~p~~ 135 (687)
+-.. .++-+ .+ ....+. . ....|.+
T Consensus 183 mEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~n 262 (568)
T KOG2396|consen 183 MELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDN 262 (568)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 1100 00000 00 000000 0 0011222
Q ss_pred HH----------------------------------------------------HH---HHHHHHHH--HcC-CHHHHHH
Q 005632 136 IS----------------------------------------------------LR---IHLASFYV--EIG-DYEKAAE 157 (687)
Q Consensus 136 ~~----------------------------------------------------~~---~~la~~~~--~~g-~~~~A~~ 157 (687)
|. .| .....-.. ..| ....-+.
T Consensus 263 p~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~ 342 (568)
T KOG2396|consen 263 PLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMC 342 (568)
T ss_pred CccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 11 01 11111111 122 3344555
Q ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCCCcHHHHHHHHHHHH-HcchHHHHHHHHHHH
Q 005632 158 SYEQIQKL---FPDNVDATKTGAQLFLKCGQTARSI-GILEEYLKVHPSDADLSVIDLLVAILM-ENNAYEKTLQHIEHA 232 (687)
Q Consensus 158 ~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 232 (687)
.++.+.+. .+..+.-+..+..++.......++. ......+. ++.. .|.....+.. .+.+++--...+...
T Consensus 343 ~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k--~~~~kl~~~~~s~sD~q~~f~~l~n~ 417 (568)
T KOG2396|consen 343 VFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGK--MWQLKLQVLIESKSDFQMLFEELFNH 417 (568)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc---chHH--HHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 66666554 4555666666666666655443332 22223322 2222 3333333333 122222221111112
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHcCC-HHHHHH--HHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 005632 233 QIVRFSGKELPLKLKVKAGICYLRLGN-MEKAEI--LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA 309 (687)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 309 (687)
++... .......|.... .|+ ...... ++..+......+....-..+-..+.+.|-+.+|...|.++...
T Consensus 418 ~r~~~--~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l- 489 (568)
T KOG2396|consen 418 LRKQV--CSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL- 489 (568)
T ss_pred HHHHh--cchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-
Confidence 22111 111111111111 222 222211 1111222222234555566677778888899999999888876
Q ss_pred CCCcHHHHHHHHHHHHH--hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 310 GTDNGYLYLKLAECYLS--LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 310 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
+|.....+..+..+-.. .-+...+..+|+.++.....+++.|...-..-...|..+.+-.++.+|..
T Consensus 490 pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 490 PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 56565555544443222 23477788899999988888889888877777788887777666665544
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.71 E-value=0.07 Score=35.57 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3344444444444444444444444444444433
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.60 E-value=0.14 Score=50.47 Aligned_cols=125 Identities=14% Similarity=-0.017 Sum_probs=79.0
Q ss_pred HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES 158 (687)
Q Consensus 79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 158 (687)
+..|+.-.|-.-...++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-......|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34566666666666666667777766666677777777777776666554443333333444555566667777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
-.-++...-.++++....+.....+|-++++...+++++.++|..
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 666666555566665555555566666777777777777766543
No 317
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.59 E-value=0.046 Score=50.43 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=57.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
.|.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344455778888888888888888888888888888888888888888888888888888888877766654
No 318
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.29 E-value=3.8 Score=41.37 Aligned_cols=91 Identities=9% Similarity=0.062 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 005632 52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD-TAQAMYYIRQAIR 130 (687)
Q Consensus 52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~ 130 (687)
.-..+|+.++...+.++..|........+.+.+.+--..|.+++...|++++.|..-|.-.+..+. .+.|...+.+++.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345677888888888999999988888888889999999999999999999999999988888776 9999999999999
Q ss_pred hCCCCHHHHHHH
Q 005632 131 AEPKDISLRIHL 142 (687)
Q Consensus 131 ~~p~~~~~~~~l 142 (687)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999876543
No 319
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.81 Score=46.84 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCCchHHHHH--HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 005632 53 AISLLKEVVRLSPNLPETYNT--LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ-AI 129 (687)
Q Consensus 53 A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~ 129 (687)
++..+...+..+|.++..+.. +...+...++...+.-.+...+..+|++..+...++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555556667777665433 366666677777777778888888888888888887777777666555555544 66
Q ss_pred HhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 130 RAEPKDISLRIHL------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 130 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
...|.+......+ +......|+..++...+.++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6777776654444 7777777888888888888888888776655555444
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.24 E-value=0.037 Score=32.25 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (687)
.++..+|.++...|++++|+..++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888877765
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.17 E-value=0.49 Score=43.06 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 279 ADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
..+.+.+|.+..+.|++++|..+|.+++..
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344455555555555555555555555543
No 322
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=3.1 Score=39.64 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC--------chHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRL--SPN--------LPETYNTLGLAHSALGNHKSAFDFYVI 93 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 93 (687)
.+..+.......++++++..|..++.. .|. .......+|..+...|+..+-......
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~ 73 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS 73 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 367788888888899999999999874 222 123567788888888887766555544
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.14 E-value=0.44 Score=43.33 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHhc---------cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 207 SVIDLLVAILMENNAYEKTLQHIEHAQIVRF---------SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
.++..+|++|...|+.+....++++|+..+. ........+.+.+|.+..+.|++++|...|.+++....
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3556677777777775554444444444321 11223456777888888888888888888888876543
No 324
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.14 E-value=1.2 Score=45.99 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC-------------CCCHHHHHHHH
Q 005632 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------------PKDSALWKQLL 109 (687)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~la 109 (687)
.+...|.+++|...---.+ ...-|..++.-.+..=+++-|.+.|.++-.+. .....--..+|
T Consensus 565 q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA 639 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA 639 (1081)
T ss_pred hhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 4556676666654321111 11235555555555556666666665553221 00001123345
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 005632 110 TFAVQKGDTAQAMYYIRQ 127 (687)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~ 127 (687)
.++.-.|.+.+|...|.+
T Consensus 640 ~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHhhhhHHHHHHHHHH
Confidence 555556666666666554
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.13 E-value=0.038 Score=32.19 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSP 99 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 99 (687)
+++.+|.++...|++++|...++++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444455555555555555544444443
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.08 E-value=0.64 Score=37.60 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhccCC-CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 278 HADLITEVADTLMSLG---HSNSALKYYHFLETNAGT-DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
.....+++++++.... +..+.+.+++.+....+| ..-...+.++..+.+.++|+.++.+.+..++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5566677777776655 455677788877753233 355677788888888888999999888888888888776654
Q ss_pred HH
Q 005632 354 LA 355 (687)
Q Consensus 354 la 355 (687)
--
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 33
No 327
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.04 E-value=1.8 Score=44.84 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=136.9
Q ss_pred HHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHH
Q 005632 76 LAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------------EPKDISLRIH 141 (687)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~p~~~~~~~~ 141 (687)
..|...|.+++|...---.+. ..-|..+|.-....=+++-|.+.|.+.-.+ ....|. -..
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iL 637 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLL 637 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHH
Confidence 466778888877653221111 123677777777777778887777765321 111122 245
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCCcHHHHHHHH
Q 005632 142 LASFYVEIGDYEKAAESYEQIQ------KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK--VHPSDADLSVIDLLV 213 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~la 213 (687)
+|.++...|++.+|.+.|.+.= ++..+ --.+.++.-+...|..++-....++-.+ .+-..+. ..+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAA 710 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAA 710 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHH
Confidence 7788888899999988887542 22111 1234555666666666655555444322 1222222 345
Q ss_pred HHHHHcchHHHHHHHHH------HHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHH
Q 005632 214 AILMENNAYEKTLQHIE------HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVAD 287 (687)
Q Consensus 214 ~~~~~~~~~~~A~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 287 (687)
..+...|+.++|+...- -++++...-+....+.+...+..+.....+.-|.++|.++-.. ..+..
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVq 781 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQ 781 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhh
Confidence 66777777777765432 2222211112333444555555566666666666666665211 23456
Q ss_pred HHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632 288 TLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 340 (687)
++...+++.+|..+.++.-+ -.+.+++-.|+.+....++++|.+.|-++
T Consensus 782 lHve~~~W~eAFalAe~hPe----~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPE----FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred heeecccchHhHhhhhhCcc----ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 67788888888877643322 24556777788888888888887766554
No 328
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.02 E-value=0.39 Score=53.93 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC------
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAIS------LLKEV-VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS------ 98 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 98 (687)
.+....+..+......|.+.+|.+ ++... -...|..+..+..++.++...|++++|+..-.++.-..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 456667788888888999988888 55533 23478888899999999999999999998888776442
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 99 --PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 99 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
|+....+..++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.+......
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 445566777777777777777777777777653 2333444566666777777777777777777764211
Q ss_pred --------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 169 --------NVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 169 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
....+..+++++...+++..|....+..
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 1233444555555555555554444433
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.93 E-value=0.4 Score=39.69 Aligned_cols=75 Identities=15% Similarity=0.009 Sum_probs=41.2
Q ss_pred HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151 (687)
Q Consensus 77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 151 (687)
.....++.+++...+..+--+.|+.++.-..-|.+++..|++.+|+..++...+..+..+...-.++.|+...|+
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333455555555555555555555555555555555556666666665555555554445444455555555544
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.74 E-value=0.64 Score=40.92 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
++..+|..|...|+.+.|++.|.++....... .+.++.+.++.+..+++.....++.++-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555555555544432221 23344444444445555555444444433
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.59 E-value=0.63 Score=40.95 Aligned_cols=19 Identities=5% Similarity=-0.083 Sum_probs=9.1
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 005632 286 ADTLMSLGHSNSALKYYHF 304 (687)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~ 304 (687)
|..+...++|.+|...|-.
T Consensus 120 gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHhchHHHHHHHHHc
Confidence 4444444555555555533
No 332
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.56 E-value=0.064 Score=47.41 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=29.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD 101 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 101 (687)
...++.+.|.+.|.+++..-|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555443
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.45 E-value=0.85 Score=36.93 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=59.9
Q ss_pred CchHHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHH
Q 005632 241 ELPLKLKVKAGICYLRLG---NMEKAEILFADLQW-KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 316 (687)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 316 (687)
.......+++++++.... +..+.+.+++.++. ..|....+..+.++..+.+.++|+.++.+.+.+++. .|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-EPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-CCCcHHH
Confidence 445566778888887664 45667888888885 666667788889999999999999999999988877 6777665
Q ss_pred HHH
Q 005632 317 YLK 319 (687)
Q Consensus 317 ~~~ 319 (687)
...
T Consensus 108 ~~L 110 (149)
T KOG3364|consen 108 LEL 110 (149)
T ss_pred HHH
Confidence 543
No 334
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=5.7 Score=40.86 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 47 YGNFEQAISLLKEVVRL------------SPNLPETYNTLGLAHSALGNHKSAFDFYVIA 94 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 94 (687)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|.....++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 45678888888777654 2334555566666666666655555554444
No 335
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=2.6 Score=43.40 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=98.6
Q ss_pred ChHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 83 NHKSAFDFYVIAAHLSPKDSALWKQ--LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160 (687)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (687)
...-++..+...+..+|.++..+.. +...+...++...+...+...+..+|++..+..+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334666666667778888877544 46677788889899999999999999999999999999888887777766666
Q ss_pred H-HHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 161 Q-IQKLFPDNVDATKTG------AQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 161 ~-~~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
. +....|++......+ +......|+..++...+.++....|.++.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 5 778888887665555 88888889999999999999999998864
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.32 E-value=1.7 Score=44.54 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 42 SLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
.....+|+++++....... +.-|.- ..-...++..+.+.|..+.|+... .++...+.| ..+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence 3445678888877666411 112221 334555666667777777777653 334444444 356788887
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|.+..++ .+++..|..+|...+.+|+++-|.++|+++-. +..+..+|...|+.+.-.+..+.+....
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7665432 34677888888888888888888888877532 2355566667777655555554444332
Q ss_pred CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232 (687)
Q Consensus 201 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 232 (687)
. +...-.+++..|+.++.++.+.+.
T Consensus 404 ~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 222334445556666666666554
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.07 E-value=13 Score=42.04 Aligned_cols=99 Identities=18% Similarity=0.091 Sum_probs=77.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQK----G---DTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
....++.....|+.|+..|++.....|... ++.+..|.....+ | .+++|+..|++.-. .|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence 344667778899999999999998888654 5666777665533 3 46777777776543 45666678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 172 (687)
|.+|...|++++-+++|.-+++..|.+|..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999998744
No 338
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.05 E-value=0.094 Score=46.42 Aligned_cols=60 Identities=23% Similarity=0.412 Sum_probs=45.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
.....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345567777777777777777777777777777777777777777777777777777653
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.03 E-value=0.77 Score=40.46 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=60.5
Q ss_pred hcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHH
Q 005632 291 SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED----NIDARLTLASLLLEEAKEEE 366 (687)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~ 366 (687)
..-.-++|...|-.+.....-+++...+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.++..+|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 33345778888877776655668888888888777 46789999999999988543 48899999999999999988
Q ss_pred HH
Q 005632 367 AI 368 (687)
Q Consensus 367 A~ 368 (687)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 340
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.89 E-value=0.44 Score=46.34 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------ch----------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN--------LP----------ETYNTLGLAHSALGNHKSAFDFYVIA 94 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~----------~~~~~l~~~~~~~g~~~~A~~~~~~a 94 (687)
-....+..|...+++++|..|.--|..+++...+ .+ .+--.+..||+.+++.+-|+....+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 3444456688888999999888888888875321 00 01223444555555555555555555
Q ss_pred hccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632 95 AHLSPKDSALWKQLLTFAVQKGDTAQAMY 123 (687)
Q Consensus 95 l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 123 (687)
+.++|.+..-+..-|.|+..+.+|.+|..
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555545555555555555444433
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.89 E-value=3.5 Score=36.47 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC---cHHHHHHHHHHHHHhhcHHHHH
Q 005632 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAI 334 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~ 334 (687)
.-+.|...|-.+-....-++++..+.+|..|. ..+.++++.++.++++...++ +++++..++.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44667777777655444457788888887776 667888888888888774433 7888889999999999888874
No 342
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.82 E-value=1.8 Score=34.20 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=48.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCc----------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc---CCC----c
Q 005632 180 FLKCGQTARSIGILEEYLKVHPSDAD----------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS---GKE----L 242 (687)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~p~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~----~ 242 (687)
.+.-|-|++|...++++.+....-+. ...+..|+..+...|+|++++..-++++..+.. -+. .
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 44557777777777777765322211 123456777777888888877777777655321 111 1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 243 PLKLKVKAGICYLRLGNMEKAEILFADL 270 (687)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 270 (687)
...+.+..+..+...|..++|+..|+.+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 1223334455555555555555555543
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.76 E-value=0.55 Score=33.94 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH---HHHHHHHcCChHHHHHHHHHHh
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNT---LGLAHSALGNHKSAFDFYVIAA 95 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~~~~al 95 (687)
.+...+.+|.-++...+.++|+..++++++..++.++-+.. +..+|...|+|.+++.+..+-+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888889999999999999999888776665444 4456677788887777654433
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.58 Score=48.15 Aligned_cols=94 Identities=10% Similarity=0.079 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
-+-|.-.++..+|..++++|...+...|.+ ......++.||....+.+.|.++++.+-+.+|.++-.....-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 334555667777777777777777665543 23455677777777788888888888877777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 005632 146 YVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~ 165 (687)
....|.-++|+.+.......
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 77777777777777766654
No 345
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=6.8 Score=37.47 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=110.9
Q ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-----ch-hhHHH
Q 005632 210 DLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-----AI-DHADL 281 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~ 281 (687)
..++.+|...++|.+|+......+.... ++...-..++..-...|....+..+|...+..+.... |+ -....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 3678889999999999988887776543 2333445666677788888888888888888764421 21 12223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhccC--CCcHHHH---HHHHHHHHHhhcHHH--HHHHHHHHHHhcCCCHHHHHHH
Q 005632 282 ITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYLY---LKLAECYLSLKERAH--AIMFFYKALDRFEDNIDARLTL 354 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l 354 (687)
-..-|.++....+|..|..+|=++.+.-. .++..+. -.+-.|-...+..++ ++-.-+.+++....+.++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 33446666777899999999888776411 1222322 222223333444444 4444556677666778888888
Q ss_pred HHHHHHc--CCHHHHHHhcCCCCcCCcc
Q 005632 355 ASLLLEE--AKEEEAITLLSPPKDLDSL 380 (687)
Q Consensus 355 a~~~~~~--g~~~~A~~~~~~a~~~~~~ 380 (687)
+..+.+. .+++.|+.-|..-+..+|.
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8887654 5788999888877766663
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.26 E-value=11 Score=38.41 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
|-+...+..+-.++.....+.-....+.+++... .+..+++.++.+|... ..++-....++..+.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344444444455544444555555556666543 3555666677777666 4455566666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHHh
Q 005632 179 LFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~ 199 (687)
.|.. ++...+..+|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 6555 6666666666666554
No 347
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=12 Score=38.69 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=104.3
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-----------
Q 005632 115 KGDTAQAMYYIRQAIRA------------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-----F----------- 166 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~----------- 166 (687)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34588888888887764 3566788999999999999999988888887632 1
Q ss_pred -----CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632 167 -----PDNVD---ATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (687)
Q Consensus 167 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 237 (687)
|.|-. +++.....+.+.|-+.-|.++++-+++++|. ++-. +.+.+-....+..+|.--+..++..-....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~-~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG-ILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh-HHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 22222 2334445567789999999999999999998 6542 444444445566777777776666533211
Q ss_pred cCCCchHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhCc
Q 005632 238 SGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNA 275 (687)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~ 275 (687)
-..-.+...-..++..|..... -..|...+.+++...|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0011122223345555655554 4667777777776655
No 348
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.15 E-value=0.42 Score=47.93 Aligned_cols=89 Identities=18% Similarity=0.085 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI---GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.|++++...+++.+|+..
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 4466788888888888888888888888887764 4666777778888888888888999999999999999999988
Q ss_pred HHHHHHhCCCCC
Q 005632 193 LEEYLKVHPSDA 204 (687)
Q Consensus 193 ~~~~~~~~p~~~ 204 (687)
...+....|.+.
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 888887788665
No 349
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=12 Score=38.41 Aligned_cols=64 Identities=22% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHcCC-HHHHHHhcCCCCcCCc
Q 005632 316 LYLKLAECYLSLKERAHAIMFFYKALDRF---ED----NIDARLTLASLLLEEAK-EEEAITLLSPPKDLDS 379 (687)
Q Consensus 316 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~ 379 (687)
-++.+|.++..+|+...|..+|...++.. .. .|-+++.+|.++...|. ..++..++.+|.+...
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 34567778888888888888888777431 11 26677888888888877 8888888887776553
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=1.2 Score=46.06 Aligned_cols=91 Identities=11% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDI------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
|.-.++..+|..+++.|...+...|.+. .....++.||....+.+.|.++++++-+.+|.++-.......+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 4455666677777777777776555442 3455667777777777777777777777777777666666666666
Q ss_pred cCChHHHHHHHHHHHHh
Q 005632 183 CGQTARSIGILEEYLKV 199 (687)
Q Consensus 183 ~g~~~~A~~~~~~~~~~ 199 (687)
.|.-++|+.........
T Consensus 441 E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSS 457 (872)
T ss_pred hcchHHHHHHHHHHHhh
Confidence 77777777766665544
No 351
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.83 E-value=0.28 Score=45.60 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH-LASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (687)
Q Consensus 98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 174 (687)
.|+++..|...+......|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++..+|++|..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 45555555555555555555555556666666666666555554 333444555566666666666666666555544
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.82 E-value=12 Score=37.68 Aligned_cols=137 Identities=14% Similarity=0.075 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+...-......+..|+.-.|-.-+..++...|.+|......+.+....|+|+.+...+.-+-..-.....+...+-...
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 33333334455678999999999999999999999999999999999999999999988766554444455666677788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
...|++++|.....-++...-+++++...-+......|-++++...+++.+.++|..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 899999999999998888777788887777777888899999999999999988753
No 353
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=8.3 Score=35.89 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=153.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhC--CCCHHH
Q 005632 72 NTLGLAHSALGNHKSAFDFYVIAAHLSP--------KDSALWKQLLTFAVQKGDTAQAMYYIRQAI---RAE--PKDISL 138 (687)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~---~~~--p~~~~~ 138 (687)
..++.-....+++++|+..|.+.+.... ........++.+|...|++..--+.....- ... |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4567777888999999999999987621 123457789999999998765544443322 211 222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCcHH
Q 005632 139 RIHLASFY-VEIGDYEKAAESYEQIQKLFPDNV------DATKTGAQLFLKCGQTARSIGILEEYLKV----HPSDADLS 207 (687)
Q Consensus 139 ~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 207 (687)
...+..-. .....++.-+..+..+++...... ..-..++.+++..|+|.+|+.....++.. +....-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222221 223445556666666555432221 23345678889999999999887766542 21111112
Q ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHhcc-CCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch--hhHHHH
Q 005632 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFS-GKE--LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI--DHADLI 282 (687)
Q Consensus 208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 282 (687)
++..-..+|....+..++...+..+...... --| ....+-..-|..+....+|.-|..+|-++.+.... .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 4556677888888888887777766544211 112 22233344466677778899999998888765432 122221
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHH--hhhccCCCcHHHHHHHHHHHH--HhhcHHHHHHHHHHHHHhcC
Q 005632 283 ---TEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYL--SLKERAHAIMFFYKALDRFE 345 (687)
Q Consensus 283 ---~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p 345 (687)
..+-..-...+..++.-..++. .++........++...+..+. .+.+|..|+..|..-+..+|
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 1111122223333443333321 111112334455555565554 34568888888887665554
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.77 E-value=8.9 Score=36.43 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005632 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 186 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 186 (687)
.+-....+..+..+-++....+++++|....++..++.- ...-..+|...++++++.... .+....-....|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccc
Confidence 344444555666667777777888888877777776653 223356677777777764321 11122222222222
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266 (687)
Q Consensus 187 ~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 266 (687)
.+|. .+.+ .+....+-..++.+..++|+..+|++.++...+.++ -..-..++-++...+....-|.+...+
T Consensus 263 ~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p--l~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 263 HEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP--LLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred hhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1122 222223455677788888888888888877766521 111223344455555555444444444
Q ss_pred HHH
Q 005632 267 FAD 269 (687)
Q Consensus 267 ~~~ 269 (687)
+-+
T Consensus 334 Lak 336 (556)
T KOG3807|consen 334 LAK 336 (556)
T ss_pred HHh
Confidence 433
No 355
>PRK12798 chemotaxis protein; Reviewed
Probab=92.60 E-value=12 Score=37.29 Aligned_cols=269 Identities=13% Similarity=0.054 Sum_probs=168.8
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHH---HHHHH----HHh------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAIS---LLKEV----VRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~---~~~~~----l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
.|-+...-++..+--...|+..--.. ++.++ ... +|.|..+ +.+|...|--...++. ++.
T Consensus 33 ~PyelvRSLQ~lQD~Va~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~A----a~iy~lSGGnP~vlr~---L~~ 105 (421)
T PRK12798 33 EPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVDA----ALIYLLSGGNPATLRK---LLA 105 (421)
T ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchhH----HHhhHhcCCCHHHHHH---HHH
Confidence 34455555666666667777643321 22222 122 3333333 4556555555544443 333
Q ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCH---
Q 005632 97 LSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFPDNV--- 170 (687)
Q Consensus 97 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~~~--- 170 (687)
.++. +.+.-..-|..-+-.|+-.++...+..+-.. .|.....+..|.. ......+...|+..|..+-=..|...
T Consensus 106 ~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEE 185 (421)
T PRK12798 106 RDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEE 185 (421)
T ss_pred cCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHH
Confidence 3332 4445555566777889999998888765432 2333334444433 34566789999999999998888753
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK 249 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 249 (687)
-++..-..+....|+.+++..+-.+.+.....++-. ..+..........++-. -...+...+..+. .+....+|..
T Consensus 186 AALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d--~~~q~~lYL~ 262 (421)
T PRK12798 186 AALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMD--PERQRELYLR 262 (421)
T ss_pred HHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcC--chhHHHHHHH
Confidence 345555566788999999999999999888777642 12223333444433222 2233555555543 4566788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhCc---hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 250 AGICYLRLGNMEKAEILFADLQWKNA---IDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 250 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
++..-.-.|+.+-|...-++++.... .+...+..+.+....-..++++|++.+..+-..
T Consensus 263 iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 263 IARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 99999999999999988888765432 235556666677777788899999998766543
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.56 E-value=0.27 Score=30.86 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCch
Q 005632 534 CLIIDLCKALASLQRYEEASEIINLSMRLAYNILPL 569 (687)
Q Consensus 534 ~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~ 569 (687)
.++..++.++...|++++|+.++++++.+....++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999876654433
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.54 E-value=0.31 Score=30.53 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888875
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.42 E-value=1.7 Score=33.56 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 247 KVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 247 ~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
...++.++...|++++|+..+++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 359
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.31 E-value=2.5 Score=47.91 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCChHHHHH------HHH-HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 005632 71 YNTLGLAHSALGNHKSAFD------FYV-IAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKD 135 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~ 135 (687)
....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-. .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455656666666666666 343 222335666677777777777777777777776665432 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----
Q 005632 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS----- 202 (687)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----- 202 (687)
...+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.+.+.+..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 455666666667777777777777666654 2222334456666666677777777777777664311
Q ss_pred CC-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 203 DA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 203 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.. ....+..++.++...+++..|....+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 11 1123444555555555555555555444433
No 360
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.31 E-value=11 Score=35.97 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=101.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 221 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~ 221 (687)
+.....+..+..+-++.-..+++++|....++..++.-- ..-..+|.+.++++++..... +...+.....|.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~------yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI------YRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH------HhhHHHHhhhcc
Confidence 333444445555556666666666666666665555422 223445556666655533211 111111111111
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-hhHHHHHHHHHHHHhcCChHHHHH
Q 005632 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
..+|. . ..+......+...++.|..++|+..+|++.++.+....|- ....+..++...+.+..-|.+...
T Consensus 262 ~~da~------~---rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 262 QHEAQ------L---RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred chhhh------h---hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 0 0111222344557899999999999999999998776652 133455667777777777776666
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHH-------------Hhhc---HHHHHHHHHHHHHhcCCCHHHHHH
Q 005632 301 YYHFLETNAGTDNGYLYLKLAECYL-------------SLKE---RAHAIMFFYKALDRFEDNIDARLT 353 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~-------------~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 353 (687)
.+-+.-+...|..+...+.-+.+-. +.|- -..|++...++++.+|.-+..++.
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 6655555545555544443322211 1111 123566666777777766655443
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=14 Score=36.42 Aligned_cols=195 Identities=12% Similarity=0.057 Sum_probs=119.5
Q ss_pred HHHcchHHHHHHHHHHHHHHhccC-----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hCchhhHHHHHHH
Q 005632 216 LMENNAYEKTLQHIEHAQIVRFSG-----KELPLKLKVKAGICYLRLGNMEKAEILFADLQW-----KNAIDHADLITEV 285 (687)
Q Consensus 216 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 285 (687)
++.++++.+|...-+..+...... +-.....++.+..++...|+...-...+...+. .+........+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 344567777766665554331111 112345566777777777876666655555432 2222355566777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc---cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH------HHHHHH
Q 005632 286 ADTLMSLGHSNSALKYYHFLETN---AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA------RLTLAS 356 (687)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~ 356 (687)
-..|...+.|+.|-....+..-. .+...+..++.+|.+..-+++|..|.+++-+++...|.+... ...+..
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~iv 295 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIV 295 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHH
Confidence 88889999999999888665521 011245667889999999999999999999999999975321 122333
Q ss_pred HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Q 005632 357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (687)
Q Consensus 357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 426 (687)
+-.-+|++.+=.-+-+..... ....|+.|..+- +.|+..+..+.+++.-.+...
T Consensus 296 v~ll~geiPers~F~Qp~~~k---------------sL~~Yf~Lt~AV-r~gdlkkF~~~leq~k~~f~~ 349 (493)
T KOG2581|consen 296 VELLLGEIPERSVFRQPGMRK---------------SLRPYFKLTQAV-RLGDLKKFNETLEQFKDKFQA 349 (493)
T ss_pred HHHHcCCCcchhhhcCccHHH---------------HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhh
Confidence 344457665533332221111 224677777764 677777776666666555433
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.87 E-value=2.4 Score=43.47 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=47.9
Q ss_pred HHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCC
Q 005632 215 ILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGH 294 (687)
Q Consensus 215 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 294 (687)
.....++++++........-. +..+.......+..+.+.|-++.|+...+ +++..+.+ ..+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeL---Al~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHRFEL---ALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHH---HHhcCC
Confidence 334456666655554321111 12223334455555666666666654432 22222322 345666
Q ss_pred hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632 295 SNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 295 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 340 (687)
.+.|.+.. ...+++..|..+|.....+|+++-|.++|+++
T Consensus 334 L~~A~~~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 334 LDIALEIA------KELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666554 13345556666666666666666666666654
No 363
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=22 Score=38.68 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=131.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 005632 74 LGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLASFYVEIGD 151 (687)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~ 151 (687)
.-.+..+..-|+-|+...+.- ..+++. ...+...|.-++..|++++|...|-+.+..- |...- .-+.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHH
Confidence 344556667777777665442 223332 3556778888899999999999998887642 21111 11122223
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHcchHHHHHHHHH
Q 005632 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS-VIDLLVAILMENNAYEKTLQHIE 230 (687)
Q Consensus 152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~la~~~~~~~~~~~A~~~~~ 230 (687)
..+-..+++...+..-.+.+-...|-.+|.++++.++-.+..++ .+ ...+. -....-.++...+-.++|.-.-.
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 33334455555555444555556777888888887765554443 33 11110 01123344444455555544433
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 005632 231 HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG 310 (687)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 310 (687)
+.-. .. ..+-.++...++|++|+.++..+- ++.........|..++... +++-...+-+......
T Consensus 488 k~~~--------he---~vl~ille~~~ny~eAl~yi~slp---~~e~l~~l~kyGk~Ll~h~-P~~t~~ili~~~t~~~ 552 (933)
T KOG2114|consen 488 KFKK--------HE---WVLDILLEDLHNYEEALRYISSLP---ISELLRTLNKYGKILLEHD-PEETMKILIELITELN 552 (933)
T ss_pred Hhcc--------CH---HHHHHHHHHhcCHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHhhcC
Confidence 3221 11 123345567788999998888762 2334455566677666543 4444444443332211
Q ss_pred -CCcHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632 311 -TDNGYLY----LKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (687)
Q Consensus 311 -~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (687)
+...... ...-.+..-.+++..-..+++...+..|+.++
T Consensus 553 ~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 553 SQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 1111111 11222334456677666666667777666543
No 364
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=16 Score=36.09 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=99.3
Q ss_pred CCCChhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHh----CCC-----chHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 28 NKLSPGVTKMLGE--ASLQYAYGNFEQAISLLKEVVRL----SPN-----LPETYNTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 28 ~~~~~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~----~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
.++++++..++.. ...++.+.++.+|..+-+..+.. +-. .+..|+.+..+|...|+...-...+...+.
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4566677776654 34445568999999888877643 111 345688888888888887766666655443
Q ss_pred c-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 97 L-----SP-KDSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 97 ~-----~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
. +. ........+-+.|...+.|+.|.....+..- ... .....++.+|.+..-+++|..|.+++-+++...
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 2 11 1234456677888888999999888777642 111 224567889999999999999999999999999
Q ss_pred CCCH
Q 005632 167 PDNV 170 (687)
Q Consensus 167 p~~~ 170 (687)
|.+.
T Consensus 278 pq~~ 281 (493)
T KOG2581|consen 278 PQHA 281 (493)
T ss_pred cchh
Confidence 9753
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.31 E-value=2.9 Score=32.24 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 209 IDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 209 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
...++.++...|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.93 E-value=5.2 Score=37.82 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 102 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
..++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4556777778888888888888888888888888888888888888888888888888877664
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=3.6 Score=38.26 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=37.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+=..+...++++.|..+.++.+.++|.++.-+...|.+|.+.|.+.-|+..++..++..|+++.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3344555555666666666666666666555555666666666666666666665555555543
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.05 E-value=17 Score=34.36 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 005632 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEA 362 (687)
Q Consensus 331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 362 (687)
..-.+.|+..++.+|........+|..|....
T Consensus 211 ~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 211 KKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 33344455556667777777778888887644
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.80 E-value=0.53 Score=25.92 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q 005632 71 YNTLGLAHSALGNHKSAFDF 90 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~ 90 (687)
.+.+|.++...|++++|...
T Consensus 4 ~~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 33444444444444444443
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.41 E-value=0.5 Score=25.99 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=5.7
Q ss_pred HHHHHHHhhcHHHHH
Q 005632 320 LAECYLSLKERAHAI 334 (687)
Q Consensus 320 la~~~~~~g~~~~A~ 334 (687)
+|.++...|++++|.
T Consensus 7 la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 7 LARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHcCCHHHHH
Confidence 333333333333333
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.33 E-value=5.7 Score=40.06 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH--HHHHH--HHHHHHcCChHHHHHHHHHHhcc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTL--GLAHSALGNHKSAFDFYVIAAHL 97 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--~~~~~~~g~~~~A~~~~~~al~~ 97 (687)
..+.++..++..++|..|...++.+...-|.... .+..+ |..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999986344333 34444 44556788999999999987764
No 372
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.23 E-value=1.6 Score=40.54 Aligned_cols=74 Identities=16% Similarity=0.005 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.+-.....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 34445566777888888888888888888888888888888888888888888888888888888766544443
No 373
>PF13041 PPR_2: PPR repeat family
Probab=89.19 E-value=1.8 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632 279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 321 (687)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la 321 (687)
...|..+...+.+.|++++|.++|+++.+..-+.+...+..+-
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3445555556666666666666666655544444444444433
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.02 E-value=2.3 Score=40.05 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI 129 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 129 (687)
|..=+...++.++. ....++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 66666666666654 3467899999999999999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q 005632 130 RA 131 (687)
Q Consensus 130 ~~ 131 (687)
..
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 74
No 375
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.91 E-value=1.8 Score=26.09 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=5.5
Q ss_pred HHHHHHcCCHHHHHHH
Q 005632 109 LTFAVQKGDTAQAMYY 124 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~ 124 (687)
|..+...|++++|+..
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3333333333333333
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.83 E-value=1.8 Score=26.17 Aligned_cols=32 Identities=16% Similarity=0.003 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHH--HHHHHHhcCC
Q 005632 315 YLYLKLAECYLSLKERAHAIMF--FYKALDRFED 346 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 346 (687)
+.++.+|..+..+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666777777777777 3355555554
No 377
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.66 E-value=15 Score=31.77 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----C
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA-----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----G 116 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g 116 (687)
+.+|++|..+|..--+.+. .+...+.+|..++. .++...|++.+..+.. .+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 5578888887776544332 45666666665542 4567888888888876 45666777777666532 2
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 117 D--TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 117 ~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
+ .++|.+++.++..+. +..+.+.|...++.-. ++ +....|.... -...+..+.-..+.+.|.++--
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~-p~~~~~~~~~~kDMdka~qfa~ 192 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGK-PLDRAELGSLSKDMDKALQFAI 192 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCC-CcchhhhhhhhHhHHHHHHHHH
Confidence 3 678888888887754 5566666666655432 11 1111231100 0122334444567788888777
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHc----chHHHHHHHHHHHHHH
Q 005632 195 EYLKVHPSDADLSVIDLLVAILMEN----NAYEKTLQHIEHAQIV 235 (687)
Q Consensus 195 ~~~~~~p~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~ 235 (687)
++-++..- .+..++.+.|..- .+.++|..+-.++.++
T Consensus 193 kACel~~~----~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 193 KACELDIP----QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHhcCCh----HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 77666422 1344555555432 4567777777777665
No 378
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=31 Score=34.28 Aligned_cols=145 Identities=11% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC------------ChHHHHHHHHHHhccCCCCH
Q 005632 36 KMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALG------------NHKSAFDFYVIAAHLSPKDS 102 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~p~~~ 102 (687)
..+..-......|.| +++++.-.+.+..+|+...+|...-.++...- -.++-+.+...++..+|+..
T Consensus 30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 344444445556665 45777777788889987776665444433221 23344445555555666666
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGD--TAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 103 ~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
.+|.....++.+.+. +..=+...+++++.+|.+..+|...=.+... .....+=+++..+++..++.|..+|...
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyR 189 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYR 189 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHH
Confidence 666666666555442 4555556666666666555444332222211 1223444555555555555555555555
Q ss_pred HHHH
Q 005632 177 AQLF 180 (687)
Q Consensus 177 a~~~ 180 (687)
..++
T Consensus 190 s~lL 193 (421)
T KOG0529|consen 190 SLLL 193 (421)
T ss_pred HHHH
Confidence 4443
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.40 E-value=2.8 Score=41.09 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005632 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 159 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 159 (687)
.+..||...++.+-|+....+.+-++|....-+...|.++..+.+|.+|-..+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666555555666666665555555443
No 380
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.39 E-value=1.3 Score=27.05 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
.++..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888765
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.06 E-value=28 Score=33.01 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH
Q 005632 169 NVDATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 169 ~~~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
++..+..+|..+.+.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555666666666666555555544
No 382
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=86.35 E-value=32 Score=35.37 Aligned_cols=95 Identities=14% Similarity=0.016 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC-----
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS------LRIHLASFYVEIGDY-------EKAAESYEQIQKLF----- 166 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~----- 166 (687)
...+|+.++..|+|+.|...|+.+.+-.-++.. +.-..|.++...+.. +....+++.+....
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 457899999999999999999988875433321 122233333333321 12233333322211
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 167 ------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 167 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
.....+....+.++...|.+.+|...+-+....
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 112344556666777777777776666555544
No 383
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.25 E-value=1.3 Score=27.15 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
++..+|.+-+..++|++|+.-|.+++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.23 E-value=7.1 Score=28.45 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=26.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q 005632 75 GLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL---LTFAVQKGDTAQAMYYIRQ 127 (687)
Q Consensus 75 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~ 127 (687)
|.-++...+.++|+..+.++++..++.+.-+..+ ..++...|+|.+.+.+..+
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666655555554444333322 3344555555555544433
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.21 E-value=30 Score=32.54 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=11.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
..+++..|+..+|+..++.-+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 386
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=85.76 E-value=59 Score=35.55 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 005632 48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV---QKGDTAQAMYY 124 (687)
Q Consensus 48 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 124 (687)
|.-+.=+..++.-+.+++.+...+..|..++...|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344555667777777888888889999999999999998888888888888988888887654433 33677888889
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHH
Q 005632 125 IRQAIRAEPKDISLRIHLASFYV-------EIGDYEKAAESYEQIQKLFPDN-------VDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 125 ~~~a~~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~ 190 (687)
|++++.-. .++..|...+.... ..++++.-...|.+++..-... ...+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99988643 44555555554443 4466777888888888653322 234445555565555556677
Q ss_pred HHHHHHHHhCCCCCcHHH--HHHHH--H-HHHHcchHHHHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHHHcCCHHH
Q 005632 191 GILEEYLKVHPSDADLSV--IDLLV--A-ILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEK 262 (687)
Q Consensus 191 ~~~~~~~~~~p~~~~~~~--~~~la--~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (687)
.++...+... -+.+... |.... . ......+++.|...+.+.+..+. ...+.....+..+.......|++..
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777766654 3322111 11111 1 11223344444444333332211 1133334445555566666677666
Q ss_pred HHHHHHHHhhhCc
Q 005632 263 AEILFADLQWKNA 275 (687)
Q Consensus 263 A~~~~~~~~~~~~ 275 (687)
-...++++....+
T Consensus 331 i~l~~eR~~~E~~ 343 (881)
T KOG0128|consen 331 IQLIEERAVAEMV 343 (881)
T ss_pred HHHHHHHHHHhcc
Confidence 6666666554443
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.18 E-value=3.2 Score=34.67 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN 83 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 83 (687)
...++..|...+..|++.-|..+.+.++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888888888888888877766553
No 388
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=84.99 E-value=33 Score=31.93 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
+..+|.+....|+|++.+.++++++..+|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 344556666666666666666666665443
No 389
>PF12854 PPR_1: PPR repeat
Probab=84.96 E-value=1.6 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005632 393 NEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (687)
Q Consensus 393 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (687)
+..++..+...|.+.|+.++|.+.+.++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3358899999999999999999998875
No 390
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.65 E-value=39 Score=32.55 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH
Q 005632 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH 231 (687)
Q Consensus 152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 231 (687)
-++|+..-.-...+.|..++++-.++.+.+...+.. -..+++ .....+..--......+-.+++...+.+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~-G~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDAD-GEPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCC-CCeeeccccchhhhhHHHHHHHHHHHHH
Confidence 567888888888888988888877777665432211 111111 1100011111122334456778888888
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 232 AQIVRFSGKELPLKLKVKAGICYLR-----LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
+... . .+.+..+.-.++-++.. .-+|..-..+|.-+....| ++.+-.+.+.......-...++...+.+.
T Consensus 282 A~~~-~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve~L~ 356 (415)
T COG4941 282 ALAS-R--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVEALL 356 (415)
T ss_pred HHHc-C--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHHHhh
Confidence 8766 2 23333444444444433 2356666677776665555 56666667777777777788888887766
Q ss_pred hcc-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632 307 TNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (687)
Q Consensus 307 ~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (687)
... -.+....+...|.++.++|+.++|...|++++.+.++..+..+...
T Consensus 357 ~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 357 ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 441 1234456677899999999999999999999999988776655443
No 391
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=14 Score=36.58 Aligned_cols=127 Identities=8% Similarity=0.090 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 005632 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAM 122 (687)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 122 (687)
-+++-+.+...++..+|+...+|+....++.+.+ ++..=+....++++.+|.+..+|...=.+... .....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 5677788888999999999999999999998776 46788999999999999988777654333322 22356678
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 123 YYIRQAIRAEPKDISLRIHLASFYVE------IGD------YEKAAESYEQIQKLFPDNVDATKT 175 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~~~~~~p~~~~~~~~ 175 (687)
++..+++..++.+..+|.....++.. .|+ ...-++....++-.+|++..+|+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 88899999999999998887766652 231 234455566667778888877765
No 392
>PF13041 PPR_2: PPR repeat family
Probab=84.53 E-value=4 Score=26.78 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632 247 KVKAGICYLRLGNMEKAEILFADLQWK 273 (687)
Q Consensus 247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 273 (687)
+..+...+.+.|++++|.++|+++...
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 444444455555555555555555443
No 393
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.19 E-value=1.4e+02 Score=39.02 Aligned_cols=116 Identities=10% Similarity=-0.044 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHH---HHHHHHHhcC-ChHHHHHHHHHhhhc--cCCCcHHHHH
Q 005632 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLIT---EVADTLMSLG-HSNSALKYYHFLETN--AGTDNGYLYL 318 (687)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~~~ 318 (687)
++....|.+..+.|-++.++..+.++.....-+..++.. .-+.++.... ....+++..+..--. .....+..+.
T Consensus 2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~ 2816 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFT 2816 (3550)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHH
Confidence 445556677777888888888888876543322333332 2234444433 555666665432211 1234567788
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 005632 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360 (687)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 360 (687)
..|....+.|+.++|-..|..|++++-.-+.+|...|.....
T Consensus 2817 lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2817 LKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred hhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 899999999999999999999999998888888887765443
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.59 E-value=2 Score=27.36 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
+.+|..|..+|+.+.|...++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=83.34 E-value=34 Score=31.80 Aligned_cols=59 Identities=15% Similarity=0.353 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH-cCChHHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSA-LGNHKSAFDFYVIA 94 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~a 94 (687)
.++..|....+.|+|++.+.++++++..+|. +.+-...+..+|-. .|....+...+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 4677899999999999999999999999876 34445555555532 34444444444433
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.88 E-value=3.3 Score=23.82 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=22.6
Q ss_pred hcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632 328 KERAHAIMFFYKALDRFEDNIDARLTLASL 357 (687)
Q Consensus 328 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (687)
|+.+.+...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778888888888888888877776654
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.74 E-value=1.6 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCCcchhHHHHHHHhhCCCCchhhHHHHHHH
Q 005632 587 TDPNHGFDCAKYILQLHPYSLSAWNCYYKVL 617 (687)
Q Consensus 587 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 617 (687)
|+.+.+...+..++...|.++.+|..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4567788899999999999999998887654
No 398
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.55 E-value=6.6 Score=37.77 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 53 AISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 53 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
|+.+|.+++...|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777766665443345555555555544
No 399
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=63 Score=36.83 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=86.9
Q ss_pred HHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632 211 LLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (687)
Q Consensus 211 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (687)
...+++...+-.+.+.+.-.++++..+++.|........+-..+...|.+-+|...+-+... .......+..+..+++
T Consensus 988 kv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 988 KVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHH
Confidence 44566677788888888888899888877777777777777778888888888776655322 1224556677778888
Q ss_pred hcCChHH------------HHH-HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHH-HHHHHHHHhcC
Q 005632 291 SLGHSNS------------ALK-YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI-MFFYKALDRFE 345 (687)
Q Consensus 291 ~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p 345 (687)
+.|.++. -.. +++.+-....-.....|..+-..+...+++.+|- -.|+.+..+..
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 8776543 222 2222222222234445555556677888887765 46777776644
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.22 E-value=60 Score=32.83 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
...|.+++.-.|||..|++.++..-- ..+-...+++..|-+|+.+++|.+|+..|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788889999999888765311 1122345688889999999999999998888764
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.16 E-value=26 Score=35.36 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=12.4
Q ss_pred HhhcHHHHHHHHHHHHHh
Q 005632 326 SLKERAHAIMFFYKALDR 343 (687)
Q Consensus 326 ~~g~~~~A~~~~~~al~~ 343 (687)
..|+|+.|+..+=+++++
T Consensus 253 ~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 253 AQGRYDDAVARLYRALEL 270 (379)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 467777777777776664
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.28 E-value=7.1 Score=36.53 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=31.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Q 005632 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (687)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 234 (687)
..+..|...|.+.+|+++.++++..+|-+.. .+..+..++...|+--.+++.|++...
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~--~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQ--DNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445555555555555555555555555543 344555555555555555555554443
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.66 E-value=20 Score=32.17 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 102 (687)
...+++.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34567788999999999999999999999999999999999999999999999999998764
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.61 E-value=35 Score=35.70 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=54.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
.+...|+++.|...+-.+ | .+.....+..+..+|-.++|++ +.++. .-.+ .+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~rF---elal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDP-DQRF---ELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCCh-hhhh---hhhhhcCcHHHHH
Confidence 344566666666544332 1 2233444555555555544443 33321 1122 2345667777776
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
+...++ ++..-|..||.+....|++..|.+++.++..
T Consensus 658 ~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 658 DLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 554433 4455677777777777777777777776643
No 405
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.54 E-value=74 Score=32.77 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
.+..+-.++...-.+.-....+.+++... .+..+++.++.||... ..++-...+++.++.+-++...-..++..|..
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 33333344434444444555566666544 4567788999999888 55777888999999888888888888888777
Q ss_pred CCHHHHHHHHHHHHHhCCC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHH
Q 005632 150 GDYEKAAESYEQIQKLFPD---NV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~---~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~ 223 (687)
++-+.+..+|.+++...-. +. ++|..+-. +--.+.+.-.....+...........-++..+-.-|....++.
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 8889999999998865321 11 22222211 1123344444444433333322221112222334455566777
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHH
Q 005632 224 KTLQHIEHAQIVRFSGKELPLKLKVKAG 251 (687)
Q Consensus 224 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (687)
+|+..+...++. +..+..+.-.+.
T Consensus 223 eai~Ilk~il~~----d~k~~~ar~~~i 246 (711)
T COG1747 223 EAIRILKHILEH----DEKDVWARKEII 246 (711)
T ss_pred HHHHHHHHHhhh----cchhhhHHHHHH
Confidence 777777777776 555555444443
No 406
>PF12854 PPR_1: PPR repeat
Probab=80.13 E-value=4.5 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005632 313 NGYLYLKLAECYLSLKERAHAIMFFY 338 (687)
Q Consensus 313 ~~~~~~~la~~~~~~g~~~~A~~~~~ 338 (687)
+...|..+...|.+.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444455555555555554444
No 407
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.73 E-value=1e+02 Score=33.93 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=59.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcCCH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHL-SPKDSALWKQLLTFAVQKGDT 118 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 118 (687)
-..+++..-|+-|+.+.+.- ..+++ -...+...|.-++..|++++|...|-+.+.. +|...--. +......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHH
Confidence 44566777788888776542 22222 2456778889999999999999999888754 23211111 1111222
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154 (687)
Q Consensus 119 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 154 (687)
.+-..+++...+..-.+.+--..|-.+|.++++.++
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHH
Confidence 233334444444333333334445556666555444
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.36 E-value=24 Score=33.24 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
...+..|...|.+.+|+++.++++.++|-+...+..+..++...|+--.+.+.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334555566666666666666666666666666666666666666655555555544
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.93 E-value=4.8 Score=25.63 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+..|..|...|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556667777777777777777664
No 410
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.76 E-value=43 Score=30.22 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 144 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
.-+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-...|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455667777777777777777777777777777777777888887777777777777654
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.47 E-value=19 Score=33.86 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHH
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIE 230 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~ 230 (687)
...+|..|+..|++++|..+|+.+........- ..++..+..++...|+.+..+.+.-
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345555566666666666666655443322211 1234455555556666555554443
No 412
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.44 E-value=68 Score=32.10 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-----chHHHHHHHH--HHHHcCChHHHHHHHHH
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRLSPN-----LPETYNTLGL--AHSALGNHKSAFDFYVI 93 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 93 (687)
.++..++..++|..|...|++++...+. ....+..+.. .++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3577899999999999999999987542 2334444444 44567789999999986
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.42 E-value=8.6 Score=36.98 Aligned_cols=62 Identities=27% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
|..+|.+|..+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554433334445555444444
No 414
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=76.34 E-value=32 Score=34.14 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhc------------HHHHHHHHHHHHH
Q 005632 295 SNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE------------RAHAIMFFYKALD 342 (687)
Q Consensus 295 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~ 342 (687)
...|+.+++++.. .++|..|..+|.++..+|+ |.+|...+.+|-.
T Consensus 334 ~~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc---cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 5678888888874 4567788888888888776 4555555555543
No 415
>PRK12798 chemotaxis protein; Reviewed
Probab=75.70 E-value=93 Score=31.32 Aligned_cols=228 Identities=13% Similarity=0.066 Sum_probs=157.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCCHHHHHHHHH-HHHHcCC
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLT-FAVQKGD 117 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~-~~~~~g~ 117 (687)
+.+|.-.|--...+ +.++..++. +.+.-..-|...+-.|+..+|...+..+-... |.....+..|.. ..+...+
T Consensus 87 a~iy~lSGGnP~vl---r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 87 ALIYLLSGGNPATL---RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHhhHhcCCCHHHH---HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 44454444333333 334444443 55666667777788899999998887654332 333444554433 4456678
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHH
Q 005632 118 TAQAMYYIRQAIRAEPKDI---SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA---TKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~A~~ 191 (687)
...|+..|+.+--..|... .++..-..+....|+.+++..+-.+.+..+..++.+ +...+......++-.. ..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~ 242 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DA 242 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HH
Confidence 9999999999988888763 345555566688999999999988888887776533 3333444444443222 23
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
.+..++..-+......+|..++..-...|+.+-|...-+++..+...+......+.+..+....-..++++++..+..+-
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 35566655333334458889999999999999999999999998776777777888888888888889999999999874
Q ss_pred h
Q 005632 272 W 272 (687)
Q Consensus 272 ~ 272 (687)
.
T Consensus 323 ~ 323 (421)
T PRK12798 323 R 323 (421)
T ss_pred h
Confidence 3
No 416
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=1.5e+02 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 244 LKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
...+...+.++.+.|+.++|+..+-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45677788888899999999999888764
No 417
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.42 E-value=18 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.141 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
..+..+..+|..+-..|++++|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556677888888888888888888877654
No 418
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=6.1 Score=38.09 Aligned_cols=124 Identities=11% Similarity=0.188 Sum_probs=67.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
.+...++.++|+.|..-+.+++..-... ...+..+... +...+.+.-......++.+-...+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 4566888999999999998887542100 0000000000 011111111222333555566666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
.|+..-..++..++....+++..+..+....++++|++.+..+....|++..+...+..
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 66666555555555556666666666666666666666666666666666554444433
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.91 E-value=9.7 Score=38.23 Aligned_cols=29 Identities=31% Similarity=0.333 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632 313 NGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (687)
Q Consensus 313 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (687)
...+++.+|-+|+.+++|.+|+..|..++
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544
No 420
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=73.07 E-value=14 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRLSPN 66 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 66 (687)
..|..+...|++++|...|-+++...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4566666666666666666666666653
No 421
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=73.05 E-value=35 Score=34.45 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 127 (687)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 127 (687)
.-+|+.+++.++..+|.+......+..+|...|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34566666667777777777777777777777777777666654
No 422
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=87 Score=29.59 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC---c-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHH
Q 005632 170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA---D-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 245 (687)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 245 (687)
.+++.++|..|.+.++.+.+.+.+.+.++..-... + .-....+|.+|..+.-.++.++..+..++. +.+-.....
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 35666777777777777777766666655432211 0 011224555555555555555555555554 211111222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 246 LKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
.....|.......++.+|..++...+....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 233345555555666666666666555443
No 423
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.13 E-value=4.9 Score=22.73 Aligned_cols=28 Identities=14% Similarity=0.040 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632 396 IIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 396 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
++..+...|.+.|++++|.+.+.++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4578889999999999999999998764
No 424
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.52 E-value=59 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=20.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
...+.+...+.+++.++..++.++..+..+..+|..
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 334555666666666665555555555555555554
No 425
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.00 E-value=61 Score=27.06 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=62.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 124 (687)
...+.....+.+++.++..++.++..+..+..+|... +..+.+..+..- .+.-+ ....+..+.+.+-++++.-.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~--~~~yd---~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNK--SNHYD---IEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhc--cccCC---HHHHHHHHHHcCcHHHHHHH
Confidence 3467888888888888888777777888888887654 345555555520 01111 12233444455555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 125 IRQAIRAEPKDISLRIHLASFYVEI-GDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181 (687)
Q Consensus 125 ~~~a~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 181 (687)
+.+.- ....+. .++... ++++.|++++.+ +.+++.|..++..+.
T Consensus 92 ~~k~~----~~~~Al----~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 92 YKKDG----NFKDAI----VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHhhc----CHHHHH----HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 54421 111111 111122 556666665554 234555555554443
No 426
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.14 E-value=1.8e+02 Score=32.15 Aligned_cols=71 Identities=4% Similarity=-0.057 Sum_probs=48.8
Q ss_pred CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHhcCCCCcCCcc
Q 005632 310 GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL-EEAKEEEAITLLSPPKDLDSL 380 (687)
Q Consensus 310 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 380 (687)
.+.....|..+.......|++..-...+++++...+.+.+.|...+...- .++-.+.+...+.++....|.
T Consensus 308 ~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 308 EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 34445566677777788899888888999999988888888887775443 234444455555556655553
No 427
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.54 E-value=1.1e+02 Score=34.35 Aligned_cols=168 Identities=17% Similarity=0.037 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCH--HHHHHHHHHHhhhCchhhHHHH----
Q 005632 209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM--EKAEILFADLQWKNAIDHADLI---- 282 (687)
Q Consensus 209 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~---- 282 (687)
+..|+.+|...|+.++|++.+.+........+......+-.....+...+.. +-..++..-.+..+|.....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5678888888888888888888877642111233333333344444444443 4444444444444442111111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhc--------HHHHHHH--HHHHHHh-
Q 005632 283 --------TEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE--------RAHAIMF--FYKALDR- 343 (687)
Q Consensus 283 --------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~--~~~al~~- 343 (687)
.....-+......+-++.+++.++.....+....+..++..|...=+ -+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 12223345667788888999888866444455666666666554322 2233333 2222221
Q ss_pred ------cCC-------CHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632 344 ------FED-------NIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (687)
Q Consensus 344 ------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (687)
+|+ ....+...+.++.++|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 221 134556678888889999999988865544
No 428
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.43 E-value=26 Score=27.84 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN 83 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 83 (687)
...+..|...+..||+..|.+.+.++-+..+..+-.+..-+.+...+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4577888899999999999999999877655555556666666666664
No 429
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.42 E-value=5.5 Score=23.19 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 396 IIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 396 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
++..+...|.+.|++++|.+.|..+.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 45678889999999999999999988654
No 430
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.03 E-value=19 Score=30.19 Aligned_cols=49 Identities=20% Similarity=0.035 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 363 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 363 (687)
......+.-....|++.-|.++.+.++..+|++..+....+.++..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666666666666655543
No 431
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=68.78 E-value=9.4 Score=22.14 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 396 IIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 396 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
.+..+..++.+.|+++.|.+.+..+.+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788999999999999999999988754
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.10 E-value=1.3e+02 Score=30.08 Aligned_cols=164 Identities=14% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-------chhhHH
Q 005632 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-------AIDHAD 280 (687)
Q Consensus 208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 280 (687)
++..+|..|...|+++.|++.|.++... -.+.......+.++..+-...|+|.....+..++.... +.-.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4566777777777777777777775443 22233445566666666667777766666666554321 011223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc-------cCCCcHHHHHHHHHHH-HHhhcHH---HHHHHHHHHHHhcCCCHH
Q 005632 281 LITEVADTLMSLGHSNSALKYYHFLETN-------AGTDNGYLYLKLAECY-LSLKERA---HAIMFFYKALDRFEDNID 349 (687)
Q Consensus 281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~-~~~g~~~---~A~~~~~~al~~~p~~~~ 349 (687)
+...-|.+.+..++|..|..+|-.+... ..|.+..+|..+..+. +...++. ..-..|+..+++.|.-
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql-- 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL-- 308 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH--
Confidence 4455566666667888888887554322 1233444444332211 1111121 1224555666665542
Q ss_pred HHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632 350 ARLTLASLLLEEAKEEEAITLLSPPKDL 377 (687)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 377 (687)
+..++..| .++|....+++.+....
T Consensus 309 -r~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 309 -REILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred -HHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 32333322 46677777777655443
No 433
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=66.95 E-value=1.3e+02 Score=29.26 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=36.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh--hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 250 AGICYLRLGNMEKAEILFADLQW--KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 250 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
-+......+..+.|+..++..+. ..+.+.......++.++...|.++-|..+|+.+...
T Consensus 219 eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 219 EARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666777777777776433 223334444556677777777777777777765543
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=1.3e+02 Score=29.05 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC---c-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA---D-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL 246 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 246 (687)
+++...+..|.+.|+-+.|.+.+.+..+..-.-. + ......+|.+|....-..+.++..+..++. +.+-...-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhhH
Confidence 5666667777777777777766666554422111 1 012234455554444444444444444433 2111222223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 247 KVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
....|.......++.+|..+|-..+....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 33345555556666666666666655443
No 435
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.60 E-value=11 Score=21.13 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQA 128 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a 128 (687)
+-..|.+.|++++|...|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 333444444444444444433
No 436
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.43 E-value=1.2e+02 Score=32.16 Aligned_cols=127 Identities=25% Similarity=0.250 Sum_probs=78.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
+..+-.+|-.++|++ ..+ +++-.+.+ ..+.|+++.|.+...++ ++..-|..||.+....|++..
T Consensus 621 a~Fle~~g~~e~AL~-------~s~-D~d~rFel---al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 621 AHFLESQGMKEQALE-------LST-DPDQRFEL---ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred HhHhhhccchHhhhh-------cCC-Chhhhhhh---hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchh
Confidence 555556666665554 344 33444443 45789999998876654 557779999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
|.+++.++.... .|-.++...|+-+.-...-..+-+....|. --.+|+..|+++++.+.+...
T Consensus 685 A~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQGKNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhcccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 999999886432 222334444544332222222222222221 123567788888888877653
No 437
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=65.00 E-value=90 Score=29.74 Aligned_cols=136 Identities=11% Similarity=0.033 Sum_probs=75.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHH---HHcCCh----HHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAH---SALGNH----KSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~---~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
....++..++|++=...+.+......+ ..+..+..+... +..... ..-...++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456778889999988888888754332 111112222211 111111 13455666667778988888888877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 187 (687)
.+....=--..... .+.-...-+..... -.+.|...+.+++.++|....+...+..+-...|..+
T Consensus 86 ~~~~~Aw~~RG~~~------A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 86 YWVHRAWDIRGSGY------ASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHccch------hcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 76543110000000 00011122221111 2466778888888888888877777777777777665
No 438
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=64.97 E-value=2.1 Score=45.34 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYL--KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKV 248 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 248 (687)
..+..-+..+...|++..|...+.++- .+.|.... ......+.+....|+++.|+..+... ....-........+.
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~-~~~Ll~A~lal~~~~~~~Al~~L~~~-~~~~l~~~~~~~~~~ 102 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQA-RYQLLRARLALAQGDPEQALSLLNAQ-DLWQLPPEQQARYHQ 102 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHH-HHHHHHHHHHHhcCCHHHHHHHhccC-CcccCCHHHHHHHHH
Confidence 334455666666666666666666554 22222221 23344556666666666666666531 110111122223334
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 005632 249 KAGICYLRLGNMEKAEILFAD 269 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~ 269 (687)
..+.++...|++-+|...+-.
T Consensus 103 l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 103 LRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp ---------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 445555555555555544433
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.97 E-value=1.4e+02 Score=29.03 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI 129 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 129 (687)
-++|+.+-.-+..+-|..|+++-.++...++......=...--..+-+...+...| ..+-.+++...+.++.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHH
Confidence 46788888888888999999988888777653321110000000111112222222 2333466677777776
Q ss_pred HhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 130 RAE-PKDISLRIHLASFYVE-----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 130 ~~~-p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
... |.-....-.++.++.. .-++..-..+|.-.....|+ |.+-.+.+.......-.+.++...+.+.....-+
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 653 2222222223333322 33566666666666666654 4444555655555555666666666555431111
Q ss_pred CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 204 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 204 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.....+...|.++.+.|+.++|...|++++.+
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 11113556778888888888888888888877
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.36 E-value=1.7e+02 Score=29.37 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC--chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC-------CCcH
Q 005632 244 LKLKVKAGICYLRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-------TDNG 314 (687)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~ 314 (687)
..++..+|..|...|+++.|++.|.++..-. .......+.++..+-...|+|..-..+..++..... .-.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4566778999999999999999999864422 234667778888888888998888888777765410 0122
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~a 340 (687)
.+...-|.+.+.+++|..|..+|-.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23444455555666777777766554
No 441
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.74 E-value=59 Score=30.55 Aligned_cols=121 Identities=10% Similarity=0.133 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHH
Q 005632 85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQK--GDTAQAMYYIRQAIRAEPKDISLRIHLASFY------VEIGDYEKAA 156 (687)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~------~~~g~~~~A~ 156 (687)
+.-+.++..++.-+|.+...|...-.++... .++..-+...+++++.++.+...|...-.+. ..-.++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3344556666666777766666555555443 4466666667777777776655544322222 2333344445
Q ss_pred HHHHHHHHhCCCCHHHHHHH---HHHHHHcCC------hHHHHHHHHHHHHhCCCCCc
Q 005632 157 ESYEQIQKLFPDNVDATKTG---AQLFLKCGQ------TARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 157 ~~~~~~~~~~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~~~~~~p~~~~ 205 (687)
++-..++..++.+..+|... ....+..|+ +++-+++.-..+-.+|++..
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 55566666677777666554 222333443 33444555555556677665
No 442
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.44 E-value=1.5e+02 Score=27.95 Aligned_cols=127 Identities=7% Similarity=0.038 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCChHHH
Q 005632 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEI--GDYEKAAESYEQIQKLFPDNVDATKTGAQLF------LKCGQTARS 189 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~------~~~g~~~~A 189 (687)
.+.-+..+..+++.+|.+-..|...-.++... .++..-+...+++++.++.|...|...-.+. ..-..+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34556778889999999988888777766554 5678888889999999999876665433332 333445555
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHH---HHHHHHcch------HHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLL---VAILMENNA------YEKTLQHIEHAQIVRFSGKELPLKLKVKA 250 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 250 (687)
.++-..++..++.+.. +|... .......|+ +++-+++.-..+-. +|.+..++..+
T Consensus 170 ~eytt~~I~tdi~N~S--aW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~----~p~~~S~w~y~ 233 (328)
T COG5536 170 LEYTTSLIETDIYNNS--AWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFT----DPDNQSVWGYL 233 (328)
T ss_pred HHhHHHHHhhCCCChH--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhc----CccccchhhHH
Confidence 6677777888888775 44443 222233333 56667777776666 55554444443
No 443
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=60.11 E-value=1.7e+02 Score=28.40 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHh----ccCCCCHHHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA----HLSPKDSALWKQLLTF 111 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~ 111 (687)
..+..-...+..+++.+.++.+++.+..+|--.+.++..+.++.+.| ++.+.......+ ..-|.-. .+
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~-------~L 172 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL-------EL 172 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh-------hc
Confidence 33333344457889999999999999999988899999999999999 455544444332 2223211 11
Q ss_pred HHHcCC---HHHHHHHHHHHHH-----------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 005632 112 AVQKGD---TAQAMYYIRQAIR-----------AEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDA 172 (687)
Q Consensus 112 ~~~~g~---~~~A~~~~~~a~~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~ 172 (687)
.+..|- -++....+..... ..+ .+......-+......+..+.|+..++..+...++. ...
T Consensus 173 ~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~ 252 (301)
T TIGR03362 173 KFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHW 252 (301)
T ss_pred ccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHH
Confidence 111111 0111111111000 001 112223344677788899999999999865543322 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
.+.++.++...|.++-|...|..+.+..
T Consensus 253 rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 253 RLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999887653
No 444
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.93 E-value=25 Score=20.20 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh
Q 005632 284 EVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 284 ~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
.+...+.+.|++++|.++|.++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444444444444444443
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.43 E-value=19 Score=33.06 Aligned_cols=118 Identities=10% Similarity=0.096 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCCH---------HHHHHHHHHHHHcC
Q 005632 51 EQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLS---PKDS---------ALWKQLLTFAVQKG 116 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~---------~~~~~la~~~~~~g 116 (687)
.+=..+.+..+..+.. | +++...-.-.+..|+++.|+++...+++.+ |+.. +-....+......|
T Consensus 65 P~Y~p~V~g~L~~g~~~qd-~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag 143 (230)
T PHA02537 65 PKYLPWVEGVLAAGAGYQD-DVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAG 143 (230)
T ss_pred cchHHHHHHHHHcCCCCCC-CeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcC
Confidence 3334444555544322 2 233333344567788888888888888764 3211 11223333444455
Q ss_pred CHHH--HHHHHHHHHHh--CCCCHH--HHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q 005632 117 DTAQ--AMYYIRQAIRA--EPKDIS--LRIHLASFYV---------EIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 117 ~~~~--A~~~~~~a~~~--~p~~~~--~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
..-+ -...+..+... -|+... .+...|..+. ..++...|+.++++++.++|+.
T Consensus 144 ~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 144 ESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 4211 12222222221 133333 3555666563 4567889999999999998864
No 446
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=59.23 E-value=3.4e+02 Score=31.58 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 005632 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECY 324 (687)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 324 (687)
.++...|..+...+.+++|.-.|+.+-+.. .--.+|...|++.+|+....+.... .......-..++.-+
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle---------kAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLE---------KALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHH---------HHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHH
Confidence 334444444455555555555554432110 0112344455566665555433211 011111124455555
Q ss_pred HHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 005632 325 LSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK 375 (687)
Q Consensus 325 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 375 (687)
..++++-+|-+.....+.. | .+ ....+++...+++|+.....+.
T Consensus 1010 ~e~~kh~eAa~il~e~~sd-~--~~----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-P--EE----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC-H--HH----HHHHHhhHhHHHHHHHHHHhcc
Confidence 5556665555555544421 1 11 1233444455555655555443
No 447
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=58.91 E-value=1.3e+02 Score=26.46 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=118.4
Q ss_pred CCchHHHHHHHHHHHH-cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 65 PNLPETYNTLGLAHSA-LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV-----QKGDTAQAMYYIRQAIRAEPKDISL 138 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~p~~~~~ 138 (687)
...|+....||..+.- +.+|++|...|..-...+ ..+...+.+|..++ ..++...|++.+..+.. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 3467888888877654 568999999888766544 34555566665544 34578999999998887 457788
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632 139 RIHLASFYVEI-----G--DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211 (687)
Q Consensus 139 ~~~la~~~~~~-----g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 211 (687)
...+|.++..- + +..+|.+++.++-.+ .+..+.+.|...|+...+ + +....|..... . .
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~--~ 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-L--D 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hcccCCCCCCC-c--c
Confidence 88888877542 2 378899999998766 466777778777764322 2 22224422211 1 3
Q ss_pred HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 005632 212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR----LGNMEKAEILFADLQW 272 (687)
Q Consensus 212 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 272 (687)
.+..+.-..+.+.|.++--++-++ ... .+..++...|.. -.+.++|..+-.++.+
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel----~~~--~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACEL----DIP--QACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhc----CCh--HHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 455566678899999999888877 322 223334444332 1356666666655544
No 448
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.74 E-value=9.5 Score=36.85 Aligned_cols=66 Identities=11% Similarity=-0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL 138 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 138 (687)
.++.+-+..+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++...
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 344455555555555554444444444445555555555555555555555555555555555443
No 449
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.97 E-value=56 Score=28.61 Aligned_cols=44 Identities=7% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632 572 KEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV 616 (687)
Q Consensus 572 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 616 (687)
+.-+.-....+|...|.+++|.+.++...+ +|++...-.-+..+
T Consensus 110 ~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 110 RKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 334444567889999999999999999998 88887774444333
No 450
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=56.72 E-value=1.5e+02 Score=26.62 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL-TFAVQKGDTAQAMYYIRQA 128 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~a 128 (687)
.+..+-......||++.|-.+|.-++...+-+....-.+| .++.+.+.-....++++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 4444445555566666666666666655544444433333 3344444333333333333
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.20 E-value=3.8e+02 Score=31.18 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
.+...+.+|.+|...|..-+|+.+|.++..
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhh
Confidence 345567777777777777788887777654
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.94 E-value=22 Score=25.82 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=8.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 005632 115 KGDTAQAMYYIRQAIR 130 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~ 130 (687)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3555555555555544
No 453
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.74 E-value=26 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
.+..+..+|..+=..|+|++|+.+|.++++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556777788888888888888888877653
No 454
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=55.70 E-value=33 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
...++..|..+-..|++++|+.+|.++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777654
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.45 E-value=69 Score=34.60 Aligned_cols=170 Identities=12% Similarity=0.072 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC--CchHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632 207 SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKAGICYL---RLGNMEKAEILFADLQWKNAIDHADL 281 (687)
Q Consensus 207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~ 281 (687)
.+..++...|....+|+.-++..+..-.+ |..- .....+.+..+.++- +-|+-++|+...-.+++...+..++.
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 34455666666667777666666555443 1000 000111112222222 23566667766666665544445666
Q ss_pred HHHHHHHHH---------hcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhcC-----C
Q 005632 282 ITEVADTLM---------SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE-RAHAIMFFYKALDRFE-----D 346 (687)
Q Consensus 282 ~~~la~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p-----~ 346 (687)
+...|++|- ..+..+.|+.+|+++.+. .|. ...-.+++.++...|+ ++...+.-.-.+.++. .
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev-eP~-~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG 358 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV-EPL-EYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKG 358 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc-Cch-hhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccc
Confidence 666666653 233456677777777655 232 2222344444444443 3333333333333221 0
Q ss_pred ---CHHHHHHHHHHH---HHcCCHHHHHHhcCCCCcCCc
Q 005632 347 ---NIDARLTLASLL---LEEAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 347 ---~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~~ 379 (687)
....++..|..+ .-.+++.+|++..+.+.+..|
T Consensus 359 ~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 359 ALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred hHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 111122222211 223566666666666665554
No 456
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=55.30 E-value=29 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
.+..++.+|...=..|+|++|+.+|.++++
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455677777777888888888888777655
No 457
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=55.22 E-value=1.8e+02 Score=27.17 Aligned_cols=169 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRA-EP--KDISLRIHLASFY-VEIGDYEKAAESYEQIQKL-FPDNVDATKTGAQL 179 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~-~p--~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~~ 179 (687)
+..+|.+..+.++|++.+.+..++++. +| -+.+-...+..+| ...|....+...+...-.. ......-...+..-
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Q ss_pred HHHcCChH------HHHHHHHHHHHhCCCCCcHHHHH--HHHHHHHHcchHH----------HHHHHHHHHHHH----hc
Q 005632 180 FLKCGQTA------RSIGILEEYLKVHPSDADLSVID--LLVAILMENNAYE----------KTLQHIEHAQIV----RF 237 (687)
Q Consensus 180 ~~~~g~~~------~A~~~~~~~~~~~p~~~~~~~~~--~la~~~~~~~~~~----------~A~~~~~~~~~~----~~ 237 (687)
|...=.-+ +.+..++..+-....+....+++ ..|..|...-.+. .|...|+.+.+. .+
T Consensus 84 yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~ 163 (244)
T smart00101 84 YRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELP 163 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred cCCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhh
Q 005632 238 SGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWK 273 (687)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~ 273 (687)
+.+|....+..+.+..|+.. ++.++|..+.+++...
T Consensus 164 pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 164 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
No 458
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=53.88 E-value=2.4e+02 Score=29.06 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 249 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
.+...++..|..++++.++..=+.-+--.+.-....+-..++..|+|..|.++...+...
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 444555555556666555554332222124444555555556666666666555554433
No 459
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.86 E-value=1.8e+02 Score=31.74 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCCH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA------LWKQLLTFAV---QKGDTAQAMYYIRQAIRAE-PKDI 136 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~---~~g~~~~A~~~~~~a~~~~-p~~~ 136 (687)
.++.-..+-..|....+|+.-++..+..-.+ |+... ..+..+-++- +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4556666777777777887777666554333 32111 1112222222 3367777877777777653 3345
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 137 SLRIHLASFYVE---------IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (687)
Q Consensus 137 ~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 184 (687)
+.+...|++|-. .+..+.|++.|+++++..|... .-.+++.++...|
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 555555665532 3556778888888888877532 2334555554444
No 460
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=53.79 E-value=4.3 Score=43.06 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhCchhhHHHHHHHH
Q 005632 209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL--QWKNAIDHADLITEVA 286 (687)
Q Consensus 209 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~la 286 (687)
...-+..+...|++..|...+.+.... .-+...........+.+....|+++.|+..+... ....+......+...+
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~-~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A 105 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQ-QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRA 105 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccc-cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHH
Confidence 344455666666666666665554421 0012223334444555555566666666655531 1111112233344445
Q ss_pred HHHHhcCChHHHHHHH
Q 005632 287 DTLMSLGHSNSALKYY 302 (687)
Q Consensus 287 ~~~~~~g~~~~A~~~~ 302 (687)
.++...|++-+|...+
T Consensus 106 ~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 106 QAYEQQGDPLAAARER 121 (536)
T ss_dssp ----------------
T ss_pred HHHHhcCCHHHHHHHH
Confidence 5555555555555444
No 461
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=53.33 E-value=2.7e+02 Score=28.64 Aligned_cols=159 Identities=12% Similarity=0.051 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHHcchH-------HHHHHHHHHHHHHhcc---
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL----SVIDLLVAILMENNAY-------EKTLQHIEHAQIVRFS--- 238 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~~~--- 238 (687)
...+|++.+..++|+-|...|+.+.+-...+..+ .+....|.+....+.. ++...+++.+...+..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 4456777777777777777776666544333321 0111222222222211 2333444443333221
Q ss_pred ----CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--Cch-h---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 239 ----GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK--NAI-D---HADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 239 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
.........+..+.++...|.+.+|...+-+.... ... . ..-++...+.++ ..+..
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~ 356 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS 356 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence 01233445555666667777776666655554333 111 1 122233333333 00111
Q ss_pred cC--CC------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632 309 AG--TD------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFE 345 (687)
Q Consensus 309 ~~--~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 345 (687)
.. +. .+.-+..-|.-|...|+...|..+|..++....
T Consensus 357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 01 11 112223345677788888888888888877654
No 462
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.25 E-value=42 Score=30.06 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133 (687)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 133 (687)
+..++.+...| ++..+..++.++...|+.++|.....++....|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444444 345555556666666666666666666666665
No 463
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.13 E-value=69 Score=23.34 Aligned_cols=18 Identities=17% Similarity=-0.084 Sum_probs=7.3
Q ss_pred HHHHHHhhcHHHHHHHHH
Q 005632 321 AECYLSLKERAHAIMFFY 338 (687)
Q Consensus 321 a~~~~~~g~~~~A~~~~~ 338 (687)
|.-+-..|++.+|+.+|+
T Consensus 13 AVe~D~~gr~~eAi~~Y~ 30 (75)
T cd02682 13 AVKAEKEGNAEDAITNYK 30 (75)
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 333334444444443333
No 464
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=51.19 E-value=2.2e+02 Score=29.33 Aligned_cols=93 Identities=8% Similarity=0.018 Sum_probs=65.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhCc--hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh
Q 005632 251 GICYLRLGNMEKAEILFADLQWKNA--IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK 328 (687)
Q Consensus 251 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 328 (687)
........+.+.+..++-+...... .-.+.....+.+.++..|..++++.++..=+..+-..+...+..+-..+...|
T Consensus 73 vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~ 152 (429)
T PF10037_consen 73 VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKG 152 (429)
T ss_pred HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcc
Confidence 3333344456667777776543311 11234445788899999999999999976554444556677788889999999
Q ss_pred cHHHHHHHHHHHHHh
Q 005632 329 ERAHAIMFFYKALDR 343 (687)
Q Consensus 329 ~~~~A~~~~~~al~~ 343 (687)
++..|.+....+...
T Consensus 153 ~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 153 NYKSAAKVATEMMLQ 167 (429)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999988877654
No 465
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.75 E-value=59 Score=29.10 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 167 (687)
.++..++.+...| ++.++..++.++...|+.++|.....++....|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444444 555566666666666666666666666666666
No 466
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.48 E-value=68 Score=34.91 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHH--cCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSA--LGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
..-..++.++..+++.+|.--|..++..-|. ........+.++.. .|++..++.-..-++...|....++...+
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 3445688888889999988878888777663 34455666667665 46888999888889999999889999989
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
.+|...+.++-|++.+.-.....|.++.+....
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 999988888888888777777888886554433
No 467
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=49.89 E-value=1.3e+02 Score=30.59 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=30.3
Q ss_pred hhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchh
Q 005632 569 LEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSA 609 (687)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 609 (687)
+.|..-........+++.+|+..|..+.+.+|+..|....+
T Consensus 296 p~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 296 PSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 44445555566788889999999999999999999876443
No 468
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.70 E-value=3.9e+02 Score=29.33 Aligned_cols=159 Identities=16% Similarity=0.029 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH---H
Q 005632 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL---M 217 (687)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~---~ 217 (687)
..-.++...|+|+.|++++-+ .+.+..--..+|.++...|-..-....-...+..++.++..--+..+...| +
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 344667788999999998877 222221112333333333333322222244555554443210111222222 3
Q ss_pred HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH-----------HHHHH---HhhhC--chhhHHH
Q 005632 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE-----------ILFAD---LQWKN--AIDHADL 281 (687)
Q Consensus 218 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~---~~~~~--~~~~~~~ 281 (687)
...+..+|+++|--+... . +.......+..+..+....++++.=+ ..+++ ++... +.....+
T Consensus 339 ~~td~~~Al~Y~~li~~~-~-~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i 416 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF-K-DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREI 416 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS---SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHH
T ss_pred hccCHHHHHHHHHHHHHc-C-CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHH
Confidence 456777888777554332 1 01112222333344444443332221 11222 11111 1123344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 005632 282 ITEVADTLMSLGHSNSALKYYHFL 305 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~ 305 (687)
....|.-....|++++|+.+|.-+
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666677777777777777643
No 469
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=48.91 E-value=3.4e+02 Score=28.47 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc--HHHHHH
Q 005632 243 PLKLKVKAGICYLRLGNMEKAEILFADLQ-WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN--GYLYLK 319 (687)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 319 (687)
........+.++.+.|+...|...+.++- ...+....+.-...+.+.....++..|.+.+.+.....-+.. ...|..
T Consensus 62 ~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~ 141 (604)
T COG3107 62 QNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQA 141 (604)
T ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHH
Confidence 33445556778888999999999998875 444444555666778888899999999999987654433443 334444
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632 320 LAECYLSLKERAHAIMFFYKALDRFE 345 (687)
Q Consensus 320 la~~~~~~g~~~~A~~~~~~al~~~p 345 (687)
.+.+....|+ ++...+.-+..+|
T Consensus 142 ~a~a~ea~~~---~~~a~rari~~~~ 164 (604)
T COG3107 142 RADALEARGD---SIDAARARIAQDP 164 (604)
T ss_pred HHHHHhcccc---hHHHHHHHHHhhh
Confidence 4455554444 3333334444444
No 470
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=48.01 E-value=2.4e+02 Score=27.01 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHH
Q 005632 186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH 228 (687)
Q Consensus 186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~ 228 (687)
.+.|...+.+++.++|.... +...+..+-...|+++=-..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~--A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVA--AAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred HHHHHHHHHHHHhcCCCchH--HHHHHHHHHhhcCCchHHHHH
Confidence 57899999999999999876 566777777777877654333
No 471
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.41 E-value=39 Score=24.60 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
+..++.+|...=..|+|++|+.+|..+++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 344556666666667777777777666653
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.38 E-value=2.6e+02 Score=26.65 Aligned_cols=104 Identities=9% Similarity=-0.036 Sum_probs=66.4
Q ss_pred CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch--hh
Q 005632 204 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL---KLKVKAGICYLRLGNMEKAEILFADLQWKNAI--DH 278 (687)
Q Consensus 204 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 278 (687)
...+++.++|..|.+.++.+.+.+++.+.....- ...... .....+|.+|..+.-.++.++....+++.... ..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~-stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAM-STGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 3346888999999999999999999888776521 112222 23345666666655566666666666665431 12
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 279 ADLITEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
-..-...|.......++.+|-.++...+..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 223344566667777888888888766644
No 473
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=46.52 E-value=3e+02 Score=27.11 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=73.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH
Q 005632 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 330 (687)
Q Consensus 251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 330 (687)
..-+...|+...|..+-.+. .-.+...|+....++...++|++-..+... ...|..|.-...++...|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 33445678877777765554 123777888899999999999877665421 12334555566777888999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 005632 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK 375 (687)
Q Consensus 331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 375 (687)
.+|..+..+ -|+ ......|.+.|++.+|.+...+..
T Consensus 254 ~eA~~yI~k----~~~-----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 254 KEASKYIPK----IPD-----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHh----CCh-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999988887 122 346778889999999988765443
No 474
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.78 E-value=1.2e+02 Score=23.41 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=33.8
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (687)
.++++.....+--|-.+..+|.+|...|+.+.|...|+.--.+.|++..
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3444433333445667778888888888888888888887777887653
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.29 E-value=3.8e+02 Score=30.11 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------chHHHHHHHHHHH------------HcCChHHH--
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN----------LPETYNTLGLAHS------------ALGNHKSA-- 87 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~------------~~g~~~~A-- 87 (687)
......+++|..+...|++.+|++.|+.++-.-|- ....+...+.-|. ..+....+
T Consensus 989 ~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 989 SQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Q ss_pred HHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 88 FDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES 158 (687)
Q Consensus 88 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 158 (687)
+..|-.-..+.|-+ .-++..-...+++.+++..|.....+.+++.|..+.+-...-.......+...|.+.
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l 1140 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYEL 1140 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCccccccc
No 476
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=45.11 E-value=1e+02 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 107 QLLTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~a~~ 130 (687)
.+|...+..+++-.++-.|++++.
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls 29 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALS 29 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHH
Confidence 344444455555555555555443
No 477
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.65 E-value=3.1e+02 Score=26.83 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632 311 TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 311 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (687)
-.+|.+-+..+..+.-.|++.++...+..++-+.|+
T Consensus 210 l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 210 LLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred cchHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 345566666666666677777777777777777666
No 478
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.83 E-value=4.8e+02 Score=28.72 Aligned_cols=297 Identities=12% Similarity=0.051 Sum_probs=147.1
Q ss_pred hcCCHHHHHHHHHHHHHhC--CC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHcCCH
Q 005632 46 AYGNFEQAISLLKEVVRLS--PN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW-KQLLTFAVQKGDT 118 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~ 118 (687)
..|+..+|.+++.-.+-.+ |. ...+++.+|.++...|+- ..+++..-+....+..-.+ ..||.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 3567777777766655432 11 234677777776655543 6677766665443322211 1233333344432
Q ss_pred HHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 119 AQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAE-SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 119 ~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
. .+.|++.-+.--.+ ..+-+.+|.+.....+ .+|++ .+.-+-+..-+...--...|..+...|+-++|-.+
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~l 523 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPL 523 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHH
Confidence 2 23333333221111 1233445555444444 33444 32222222212222223455666777888888888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL--KLKVKAGICYLRLGNMEKAEILFADL 270 (687)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~ 270 (687)
.++++.-...-....-.+.++..|.-.|+...-...+.-++.- ...+. .+...+|. .-..+++.......-+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD----~nDDVrRaAVialGF--Vl~~dp~~~~s~V~lL 597 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD----VNDDVRRAAVIALGF--VLFRDPEQLPSTVSLL 597 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc----cchHHHHHHHHHhee--eEecChhhchHHHHHH
Confidence 8887654311111123556777777777765444444433322 22222 23333333 3345666666666555
Q ss_pred hhhCc-hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc---HHHHHHHHHHHHHhhc-----HHHHHHHHHHHH
Q 005632 271 QWKNA-IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN---GYLYLKLAECYLSLKE-----RAHAIMFFYKAL 341 (687)
Q Consensus 271 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~-----~~~A~~~~~~al 341 (687)
.+... .-...+-..+|.++...|. .+|+.+++.+.. +|.+ ..++..+|.+..++.+ +..-.+.|.+.+
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~--D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI 674 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS--DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVI 674 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc--ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHh
Confidence 44322 1233344566666666664 678888887764 3332 3455666666666543 344455555555
Q ss_pred HhcCCCHHHHHHHHHHH
Q 005632 342 DRFEDNIDARLTLASLL 358 (687)
Q Consensus 342 ~~~p~~~~~~~~la~~~ 358 (687)
.. .+.+....+|-++
T Consensus 675 ~d--KhEd~~aK~GAil 689 (929)
T KOG2062|consen 675 ND--KHEDGMAKFGAIL 689 (929)
T ss_pred hh--hhhHHHHHHHHHH
Confidence 33 3444555555444
No 479
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.78 E-value=59 Score=23.66 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+..++.+|...-..|+|++|+.+|.++++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677777777777777777777654
No 480
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.32 E-value=4.8e+02 Score=28.61 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL------FLK 182 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~------~~~ 182 (687)
-.++.-.|+|+.|+.++-+ .+.+..--..+|.++...|-....-..-...+..++.++.. .+++.+ .+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHh
Confidence 3567778999999999877 22232222233333333343332222225555555554322 223222 234
Q ss_pred cCChHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcchHHHHHHH-----------HHHHHHH--hccCCCchHHHHH
Q 005632 183 CGQTARSIGILEEYLKVH-PSDADLSVIDLLVAILMENNAYEKTLQH-----------IEHAQIV--RFSGKELPLKLKV 248 (687)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~la~~~~~~~~~~~A~~~-----------~~~~~~~--~~~~~~~~~~~~~ 248 (687)
..+..+|..+|--+-... |+... -.+..+..+....++++.-+-. +++-..+ +.........+..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~-l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRN-LFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHH-HHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHH-HHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 567778888775443222 11111 1233444444444433322110 1110000 1111222334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005632 249 KAGICYLRLGNMEKAEILFADL 270 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~~ 270 (687)
..|.-....|++++|+.+|.-+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 5666667777777777777665
No 481
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.92 E-value=1.2e+02 Score=24.00 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=12.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcc
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHL 97 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~ 97 (687)
..|.+.+..||+..|.+.+.++.+.
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444455555555555555443
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.89 E-value=1.9e+02 Score=23.74 Aligned_cols=120 Identities=15% Similarity=-0.003 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHc----chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCH
Q 005632 186 TARSIGILEEYLKVHP-SDADLSVIDLLVAILMEN----NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM 260 (687)
Q Consensus 186 ~~~A~~~~~~~~~~~p-~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (687)
.++-...|+..+.... .+.....|.....-.... +.-..-...+++++..+..+.....+..+....+....-..
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHHHhhhCc-hhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 261 EKAEILFADLQWKNA-IDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 261 ~~A~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
.+..+|..+....- ...+..|...|..+...|++++|.++|+..+
T Consensus 81 -~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 483
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.47 E-value=98 Score=29.24 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchh-----hHHHHHHHHHh
Q 005632 546 LQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSA-----WNCYYKVLSRM 620 (687)
Q Consensus 546 ~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~~~~~~~~~ 620 (687)
.|+|-||..++++.+-.+......+...++.+-.+.+.+..++..-|..++-.+++..-....+ ...++.++...
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~ 98 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEA 98 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhc
Confidence 4577777777776655443332333344555666666666666666655554444332221111 12333334333
Q ss_pred cCCcccccchHHHHHHHHh---h--CC--CCCCccceeccccccccchHHHHHHHHH
Q 005632 621 GKINSKHSKHSKFIRYLRA---K--YK--DCVPPIIISGHQFTMASHHQDAARCYLE 670 (687)
Q Consensus 621 ~~~~~~~~~a~~~~~~~~~---~--~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 670 (687)
+. ..++-..++.++.+ . .+ .++....++|..+...++...|...|-.
T Consensus 99 ~~---~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 99 DP---SEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred CC---CccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 33 22333445544443 2 22 3455566888888888888888777643
No 484
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=42.31 E-value=4.3e+02 Score=28.32 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG--DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (687)
|+.++|+..+++.....+ ..-.....+.++...+ ....=..+|+.+.+.+|........+...+.. ...+.+.+
T Consensus 323 ~~l~eal~~~e~~c~~~~-~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Ll 398 (547)
T PF14929_consen 323 GRLKEALNELEKFCISST-CALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLL 398 (547)
T ss_pred ccHHHHHHHHHHhccCCC-ccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHH
Confidence 677788777776443222 2223444455555545 56666778888888888766555555444433 44445555
Q ss_pred HHH---HHhCCCCCcHHHHHHHHHHHHH-cchHHHHHHHHHHHH
Q 005632 194 EEY---LKVHPSDADLSVIDLLVAILME-NNAYEKTLQHIEHAQ 233 (687)
Q Consensus 194 ~~~---~~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~ 233 (687)
+-+ +...|..+ +|..++.++.+ .++++.-.+....++
T Consensus 399 e~i~~~l~~~~s~~---iwle~~~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 399 EMIALHLDLVPSHP---IWLEFVSCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HHHHHHhhcCCCch---HHHHHHHHHHhccccccccHHHHHHHH
Confidence 422 23344443 67777777777 555554444445544
No 485
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.12 E-value=63 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+..++.+|...-..|++++|+.+|.++++
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666667777777777666554
No 486
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=41.94 E-value=52 Score=24.27 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 81 LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA 131 (687)
Q Consensus 81 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 131 (687)
.+.|+.|..+..+++..+ ..|+.++|+.+|++++..
T Consensus 2 k~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 2 RGYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred chHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
No 487
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.78 E-value=1.2e+02 Score=24.56 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
+...|...++.+++-.++-.|++++..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 445577777777777777777777654
No 488
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=5.2e+02 Score=28.50 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=87.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhC-chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Q 005632 249 KAGICYLRLGNMEKAEILFADLQWKN-AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL 327 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 327 (687)
..|..+...|.-++|-.+.++++... |--...-.+.++..|...|+...-..++.-++.. ..++..-....|.-+.-.
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEe
Confidence 44556666677777777777765432 2222333556677777777766555555444422 222333333333333334
Q ss_pred hcHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHH
Q 005632 328 KERAHAIMFFYKALDRFEDNIDAR----LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHI 403 (687)
Q Consensus 328 g~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 403 (687)
.+++.-.....-..+.. |+.++ ..||.++.-.|. .+|+.+++.... +|.+- ...-++..+|.+
T Consensus 585 ~dp~~~~s~V~lLses~--N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~f---------VRQgAlIa~amI 651 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSESY--NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDF---------VRQGALIALAMI 651 (929)
T ss_pred cChhhchHHHHHHhhhc--ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHH---------HHHHHHHHHHHH
Confidence 45665555554444332 33333 345555555554 568999987766 66542 344677888888
Q ss_pred HHHcCCc-----hHHHHHHHHHH
Q 005632 404 YRAKGMP-----EDFVDAIFPLV 421 (687)
Q Consensus 404 ~~~~g~~-----~~A~~~~~~~~ 421 (687)
..++.+. ...++.|.+++
T Consensus 652 m~Q~t~~~~pkv~~frk~l~kvI 674 (929)
T KOG2062|consen 652 MIQQTEQLCPKVNGFRKQLEKVI 674 (929)
T ss_pred HHhcccccCchHHHHHHHHHHHh
Confidence 8777653 33445555554
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.18 E-value=1.1e+02 Score=31.23 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
.+...+..|..++..|++.+|+..|+.+|..
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999875
No 490
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=41.14 E-value=2.1e+02 Score=23.76 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYN 72 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 72 (687)
..-+..|....-.|..++..++..+.....+-...-|+
T Consensus 3 ~kkLmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWv 40 (161)
T PF09205_consen 3 LKKLMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWV 40 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHcCcCCcccccee
Confidence 34566788899999999999999999887765444343
No 491
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=40.88 E-value=6.6e+02 Score=29.49 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 005632 283 TEVADTLMSLGHSNSALKYYH 303 (687)
Q Consensus 283 ~~la~~~~~~g~~~~A~~~~~ 303 (687)
..++.-+...+++-+|-++..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHH
Confidence 334444444444444444443
No 492
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.63 E-value=2.1e+02 Score=23.71 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632 289 LMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (687)
+...|+-++--+.+..+... ...+|..+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 96 lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34444444444444444432 344556666666666666666666666665544
No 493
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.51 E-value=3.3e+02 Score=25.94 Aligned_cols=135 Identities=15% Similarity=0.078 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH----HH
Q 005632 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL----IT 283 (687)
Q Consensus 208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~ 283 (687)
.+..-++.+.-..||..|+...++.++....+.... .......+. -.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~e-----------------------------e~~~~~~evK~sLcv 87 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAE-----------------------------EPAGSSLEVKCSLCV 87 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----------------------------ccccchhhhhhhhhh
Confidence 344556667777888888888888877642110000 000000111 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---HH----HHHHHHH
Q 005632 284 EVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN---ID----ARLTLAS 356 (687)
Q Consensus 284 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~----~~~~la~ 356 (687)
.-..++.+.+++.+++.+.-+..+....--+.++-.-.-+|.+.|++....+.-..-+. +|+| ++ +-..+-.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHH
Confidence 11345566777777777665555432122344555555567777877766666555443 4444 11 2233444
Q ss_pred HHHHcCCHHHHHHhcC
Q 005632 357 LLLEEAKEEEAITLLS 372 (687)
Q Consensus 357 ~~~~~g~~~~A~~~~~ 372 (687)
++.=+|.+++|.++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 5555788888888884
No 494
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=40.21 E-value=68 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+..++.+|...-..|+|++|+.+|..+++
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44566667666777777777777776655
No 495
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=39.47 E-value=2.1e+02 Score=23.43 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632 207 SVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (687)
Q Consensus 207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 237 (687)
..+..++..+...|++..|+++++...+.++
T Consensus 53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 3455555555555555555555555555544
No 496
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.01 E-value=74 Score=31.19 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHcCChHHHHHH
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP--------NLPETYNTLGLAHSALGNHKSAFDF 90 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~ 90 (687)
....+..++..|+.++..+++++|...|..+..+.. .+..+++..|..++..++.....-.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677889999999999999999999999876532 2456777778777777766655443
No 497
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.61 E-value=92 Score=33.97 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHHHHHH--cCCHHHHHHH
Q 005632 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTFAVQ--KGDTAQAMYY 124 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~ 124 (687)
+++...+.++++. ..-|...+..+++..+.--|..++.+-|.+ .......+.+++. .|++..++.-
T Consensus 44 ~di~v~l~ra~~~--------~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 44 EDIEVFLSRALEL--------KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred cchHHHHHHHHHH--------HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 4555555555443 233566778888888877788888777743 3334556666654 4689999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (687)
Q Consensus 125 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 177 (687)
..-++...|....++...+.+|...+..+-|++.+.-.....|.++.+.....
T Consensus 116 ~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~ 168 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFE 168 (748)
T ss_pred hhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 99999999999999999999999999999999998888888898865544333
No 498
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=38.23 E-value=70 Score=18.58 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=5.9
Q ss_pred ChHHHHHHHHHHh
Q 005632 83 NHKSAFDFYVIAA 95 (687)
Q Consensus 83 ~~~~A~~~~~~al 95 (687)
+..+|..+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 499
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=38.10 E-value=81 Score=22.85 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+..++..|...-..|++++|+.+|..+++
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666677777777777766654
No 500
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=37.75 E-value=9 Score=32.29 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHH--------HHHHhcCCCHHHHHHHHH
Q 005632 285 VADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY--------KALDRFEDNIDARLTLAS 356 (687)
Q Consensus 285 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~~~la~ 356 (687)
+...+...+.....+.+++.+.......++.....+..+|.+.+++++...+++ .+++...... .+-....
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~-l~~~a~~ 91 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHG-LYEEAVY 91 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTT-SHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcc-hHHHHHH
Q ss_pred HHHHcCCHHHHHH------hcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCch
Q 005632 357 LLLEEAKEEEAIT------LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPE 411 (687)
Q Consensus 357 ~~~~~g~~~~A~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 411 (687)
+|.+.|++++|+. .+..+.+...... +.+++..++..+...+...
T Consensus 92 Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~----------~~~l~~~l~~~~l~~~~~~ 142 (143)
T PF00637_consen 92 LYSKLGNHDEALEILHKLKDYEEAIEYAKKVD----------DPELWEQLLKYCLDSKPFN 142 (143)
T ss_dssp HHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCS----------SSHHHHHHHHHHCTSTCTC
T ss_pred HHHHcccHHHHHHHHHHHccHHHHHHHHHhcC----------cHHHHHHHHHHHHhcCccc
Done!